Citrus Sinensis ID: 004248
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGK4 | 915 | Probable LRR receptor-lik | yes | no | 0.872 | 0.730 | 0.617 | 0.0 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.715 | 0.438 | 0.321 | 2e-66 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.759 | 0.601 | 0.308 | 6e-63 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.698 | 0.427 | 0.316 | 6e-62 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.690 | 0.463 | 0.331 | 1e-61 | |
| Q9ZWC8 | 1166 | Serine/threonine-protein | no | no | 0.703 | 0.462 | 0.319 | 7e-60 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.693 | 0.482 | 0.295 | 1e-59 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.721 | 0.572 | 0.304 | 2e-57 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.665 | 0.427 | 0.319 | 1e-56 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.707 | 0.555 | 0.322 | 2e-56 |
| >sp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1 | Back alignment and function desciption |
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Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/675 (61%), Positives = 512/675 (75%), Gaps = 7/675 (1%)
Query: 49 TELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRF 108
+E L LRSSLGLR DWP K DPC+ W G++C+NGS++GINISGFRRTR+G NP+F
Sbjct: 35 SEKLILLNLRSSLGLRGTDWPIKGDPCVDWRGIQCENGSIIGINISGFRRTRIGKLNPQF 94
Query: 109 AADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNL 168
+ D L NLT L+ FNAS LPG+IP+W G L L+ LDL SCS++GV+PF+LGNLT+L
Sbjct: 95 SVDPLRNLTRLSYFNASGLALPGTIPEWFGVSLLALEVLDLSSCSVNGVVPFTLGNLTSL 154
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG 228
+L LS N LT +PSSLGQL LS LDLSRNS TG +P SF LKNL +LD+SSNYLTG
Sbjct: 155 RTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTG 214
Query: 229 SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSL 288
IPPGLG LSKL +LN S+NS +S IP++LGDL +LVD DLS+NSLSGSVP ELR L L
Sbjct: 215 PIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKL 274
Query: 289 QKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
Q IG+N LSG L V+LF SQLQ +VLR+NGF+G PDV WS+P+LR+LDI++NNFT
Sbjct: 275 QLMAIGDNLLSGTLPVDLFSAESQLQTLVLRENGFSGSLPDVCWSLPKLRILDIAKNNFT 334
Query: 349 GPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL 408
G LP S + + ++IS N FYG LTP+L RFR++DLSGNYFEG++P+YV S+
Sbjct: 335 GLLPYSSYDSDQIAEMVDISSNTFYGELTPILRRFRIMDLSGNYFEGKLPDYVTGENVSV 394
Query: 409 DSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPE-TSGDSNRKIIVLSAVL 467
SNCL+N Q+ C++FY +RGL FD+FGRPN TQP +SG S R +I+L+AV
Sbjct: 395 TSNCLRNERRQKPSAICAAFYKSRGLDFDDFGRPNLTQPTSKNASSGISRRTVIILAAVG 454
Query: 468 GGFGLIVLLVLLA-LLALCFCKKRTPNQRGVGVGPVPAG--SSLPPPGA-SINFTNLGES 523
GG I+L V+L +L LC +R QRG P PAG S PP GA + + + LG +
Sbjct: 455 GGVAFILLFVILPIILVLCMRHRRRAAQRGNNDRPKPAGEASQQPPKGAQTFDLSRLGNA 514
Query: 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFF 583
F+Y+QLL AT +F+DANLIK GHSG+LFRG LE GIPVVIK+ID++ K+E Y+ EL+ F
Sbjct: 515 FSYEQLLQATEEFNDANLIKRGHSGNLFRGFLENGIPVVIKKIDVREGKSEGYISELELF 574
Query: 584 SKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTE-DDLQSLDWITRLKI 642
SK H RLVP LGHC+E E++KFLVYK+M +GDL+SSL+RK+ E D L+SLDWITRLKI
Sbjct: 575 SKAGHQRLVPFLGHCLENESQKFLVYKFMRHGDLASSLFRKSENEGDGLKSLDWITRLKI 634
Query: 643 AIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRL 702
A+GAAEGLSYLHHEC+ P VHRDVQASSILLDDKFEVRLGSLSE AQ GDA+QSRI+RL
Sbjct: 635 ALGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEAYAQ-GDAYQSRISRL 693
Query: 703 LRLPQSSEQGSSGMV 717
LRLPQSSE SSG+
Sbjct: 694 LRLPQSSEPSSSGVT 708
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 197/612 (32%), Positives = 303/612 (49%), Gaps = 64/612 (10%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
D+L++L +L N S L G+I G + + D+ + IP LGN NL
Sbjct: 546 DSLISLRNLTRINLSHNRLNGTIHPLCGSS--SYLSFDVTNNGFEDEIPLELGNSQNLDR 603
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L L N LTG IP +LG++ LS+LD+S N+LTG IP L K L+ +D+++N+L+G I
Sbjct: 604 LRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPI 663
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
PP LG LS+L L +S+N S+P +L + L+ L L NSL+GS+P E+
Sbjct: 664 PPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEI-------- 715
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350
GNL L ++ L +N F+G P + + +L L +SRN+ TG
Sbjct: 716 ---------GNLGA--------LNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGE 758
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPVLG---RFRLVDLSGNYFEGRVPEYVHSNASS 407
+P + L++S N F G + +G + +DLS N G VP V + S
Sbjct: 759 IPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSV-GDMKS 817
Query: 408 LD------SNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETSGDSNRKII 461
L +N + Q + SF GL R N + + G S R ++
Sbjct: 818 LGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQ-QGLSARSVV 876
Query: 462 VLSAV--LGGFGLIVLLVLLALLALCFCKKRTPNQRGVGVGPVPAGSSLPPPGASIN--F 517
++SA+ L GL++L++ L F K+R + VG G SS A+ F
Sbjct: 877 IISAISALTAIGLMILVIAL------FFKQRHDFFKKVGHGSTAYTSSSSSSQATHKPLF 930
Query: 518 TNLGES--FTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRI----DLQSV 571
N ++ ++ AT + S+ +I +G SG +++ LE G V +K+I DL S
Sbjct: 931 RNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSN 990
Query: 572 KTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLVYKYMPNGDLSSSLYR-KTNTED 629
K+ + E+ ++ H LV L+G+C + E L+Y+YM NG + L+ K E
Sbjct: 991 KS--FSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEK 1048
Query: 630 DLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS------ 683
+ LDW RL+IA+G A+G+ YLHH+C P VHRD+++S++LLD E LG
Sbjct: 1049 KKKLLDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKV 1108
Query: 684 LSEVCAQGGDAH 695
L+E C D++
Sbjct: 1109 LTENCDTNTDSN 1120
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 204/662 (30%), Positives = 321/662 (48%), Gaps = 80/662 (12%)
Query: 59 SSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRL-GSQNPRFAADALVNLT 117
+L L R ++ L WN V + G R L G+ +P + LT
Sbjct: 172 KTLDLARNQLTGEIPRLLYWNEV---------LQYLGLRGNMLTGTLSPD-----MCQLT 217
Query: 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG 177
L F+ L G+IP+ +G + + LD+ I+GVIP+++G L + +L L N
Sbjct: 218 GLWYFDVRGNNLTGTIPESIGN-CTSFEILDVSYNQITGVIPYNIGFL-QVATLSLQGNK 275
Query: 178 LTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL 237
LTG IP +G + L+VLDLS N LTG IP G L L + N LTG IPP LG +
Sbjct: 276 LTGRIPEVIGLMQALAVLDLSDNELTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNM 335
Query: 238 SKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNF 297
S+L YL +++N L IP +LG L+ L +L+L+ N+L G +PS + +L +F + NF
Sbjct: 336 SRLSYLQLNDNELVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNF 395
Query: 298 LSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSN 357
LSG + + F + L + L N F G P L + L LD+S NNF+G +P + +
Sbjct: 396 LSGAVPLE-FRNLGSLTYLNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGD 454
Query: 358 VNTSTVELNISQNMFYGGLTPVLGRFR---LVDLSGNYFEGRVPEYV-----HSNASSLD 409
+ + LN+S+N G L G R ++D+S N+ G +P + ++ +
Sbjct: 455 LEHLLI-LNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNN 513
Query: 410 SNCLQNVPNQRTLVDCSSFYAARGLSFDN-------------------FGRP-------- 442
+ +P+Q L +C S A +SF+N FG P
Sbjct: 514 NKIHGKIPDQ--LTNCFSL-ANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCGNWVG 570
Query: 443 NATQPPPPETSGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKRTPNQRGVGVGPV 502
+ P P++ + ++ V+ VLG + L+ + +A+ K++ P V
Sbjct: 571 SICGPSLPKSQVFT--RVAVICMVLG----FITLICMIFIAVYKSKQQKP---------V 615
Query: 503 PAGSSLPPPGAS-INFTNLGESF-TYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIP 560
GSS P G++ + ++ + T+ ++ T + + +I G S +++ + P
Sbjct: 616 LKGSSKQPEGSTKLVILHMDMAIHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKTSRP 675
Query: 561 VVIKRIDLQSVKT-EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSS 619
+ IKRI Q + EL+ + H +V L G+ + L Y YM NG
Sbjct: 676 IAIKRIYNQYPSNFREFETELETIGSIRHRNIVSLHGYALSPFG-NLLFYDYMENG---- 730
Query: 620 SLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679
SL+ + LDW TRLKIA+GAA+GL+YLHH+CT +HRD+++S+ILLD FE
Sbjct: 731 SLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDGNFEA 790
Query: 680 RL 681
RL
Sbjct: 791 RL 792
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Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 186/587 (31%), Positives = 298/587 (50%), Gaps = 52/587 (8%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
D+L+NL +L N S GSI G + + D+ G IP LG TNL
Sbjct: 547 DSLINLKNLTRINFSSNKFNGSISPLCGSS--SYLSFDVTENGFEGDIPLELGKSTNLDR 604
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L L N TG IP + G++S LS+LD+SRNSL+G IP GL K L+ +D+++NYL+G I
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
P LG L L L +S+N S+P ++ L +++ L L NSL+GS+P E+ L++L
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNA 724
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR-LLDISRNNFTG 349
+ N LSG L + +S+L + L +N TG P + + L+ LD+S NNFTG
Sbjct: 725 LNLEENQLSGPLPSTI-GKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTG 783
Query: 350 PLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFR---LVDLSGNYFEGRVPEYVHSNAS 406
+P++ S + L++S N G + +G + ++LS N EG++ +
Sbjct: 784 RIPSTISTL-PKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK------- 835
Query: 407 SLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRP--NATQPPPPETSGDSNRKIIVLS 464
Q + +F GL G P + + S + ++++S
Sbjct: 836 ------------QFSRWQADAFVGNAGLC----GSPLSHCNRAGSKNQRSLSPKTVVIIS 879
Query: 465 AV--LGGFGLIVLLVLLALLALCFCKKRTPNQRGVGVGPVPAGSSLPPPGASINFTNLG- 521
A+ L L+VL+++L F K+ + V G S+ A + F+N G
Sbjct: 880 AISSLAAIALMVLVIIL------FFKQNHDLFKKVRGGNSAFSSNSSSSQAPL-FSNGGA 932
Query: 522 -ESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRI----DLQSVKTEAY 576
+ ++ AT ++ +I +G SG +++ L+ G + +K+I DL S K ++
Sbjct: 933 KSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLMSNK--SF 990
Query: 577 LLELDFFSKVSHARLVPLLGHCMERENE-KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLD 635
E+ + H LV L+G+C + + L+Y+YM NG + L+ NT+ + L
Sbjct: 991 NREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSVWDWLHANENTKKK-EVLG 1049
Query: 636 WITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
W TRLKIA+G A+G+ YLH++C P VHRD+++S++LLD E LG
Sbjct: 1050 WETRLKIALGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLG 1096
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 192/580 (33%), Positives = 293/580 (50%), Gaps = 51/580 (8%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
L LT L F A L GSIP L LQALDL S++G IP L L NLT L
Sbjct: 390 LGTLTKLTLFFAWSNQLEGSIPPGLAD-CTDLQALDLSRNSLTGTIPSGLFMLRNLTKLL 448
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
L N L+G IP +G S L L L N +TG IP+ G LK ++ LD SSN L G +P
Sbjct: 449 LISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPD 508
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
+G+ S+LQ +++SNNSL S+P + L L LD+S N SG +P+ L L SL K +
Sbjct: 509 EIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLI 568
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL-LDISRNNFTGPL 351
+ N SG++ +L S LQ++ L N +G P L + L + L++S N TG +
Sbjct: 569 LSKNLFSGSIPTSL-GMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKI 627
Query: 352 PNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDL--SGNYFEGRVPEYVHSNASSLD 409
P+ +++N ++ L++S NM G L P+ LV L S N F G +P+ S
Sbjct: 628 PSKIASLNKLSI-LDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPDNKLFRQLS-- 684
Query: 410 SNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETSGDSNRKIIVLSAVLGG 469
Q++ + L CSS + F + + N GD++R + +
Sbjct: 685 ---PQDLEGNKKL--CSSTQDS---CFLTYRKGNGLG-----DDGDASRTRKLRLTLALL 731
Query: 470 FGLIVLLVLLALLALCFCKKRTPNQRGVGVGPVPAGSSLPPPGASINFTNLGESFTYQQL 529
L V+L++L +A+ ++ N+R +G P F L +F+ Q+
Sbjct: 732 ITLTVVLMILGAVAVIRARRNIDNERDSELGETYKWQFTP-------FQKL--NFSVDQI 782
Query: 530 LAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRI-----------DLQSVKTEAYLL 578
+ + N+I G SG ++R ++ G + +K++ ++V+ +++
Sbjct: 783 IRC---LVEPNVIGKGCSGVVYRADVDNGEVIAVKKLWPAMVNGGHDEKTKNVR-DSFSA 838
Query: 579 ELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWIT 638
E+ + H +V LG C R N + L+Y YMPNG L S L+ + + SLDW
Sbjct: 839 EVKTLGTIRHKNIVRFLGCCWNR-NTRLLMYDYMPNGSLGSLLHERRGS-----SLDWDL 892
Query: 639 RLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678
R +I +GAA+GL+YLHH+C P VHRD++A++IL+ FE
Sbjct: 893 RYRILLGAAQGLAYLHHDCLPPIVHRDIKANNILIGLDFE 932
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 193/604 (31%), Positives = 293/604 (48%), Gaps = 65/604 (10%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLG- 187
L G++P LG+ +L+ +DL ++G IP + L NL+ L + N LTGTIP +
Sbjct: 414 LSGTVPMELGK-CKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCV 472
Query: 188 QLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247
+ L L L+ N LTG+IP S N+ + +SSN LTG IP G+G LSKL L + N
Sbjct: 473 KGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGN 532
Query: 248 NSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLF 307
NSL+ ++P QLG+ SL+ LDL+ N+L+G +P EL L + G++S F
Sbjct: 533 NSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGL--------VMPGSVSGKQF 584
Query: 308 PTVSQLQIIVLRQNG----FTGPPPDVLWSMPQLR-----------------------LL 340
V R G F G + L +P +
Sbjct: 585 AFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYF 644
Query: 341 DISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLV---DLSGNYFEGRV 397
DIS N +G +P N+ V LN+ N G + G + + DLS N +G +
Sbjct: 645 DISYNAVSGFIPPGYGNMGYLQV-LNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYL 703
Query: 398 PEYVHSNA--SSLD---SNCLQNVP--NQRTLVDCSSFYAARGLSFDNFGRPNATQPPPP 450
P + S + S LD +N +P Q T S + GL RP + P P
Sbjct: 704 PGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPCGSAPRRP 762
Query: 451 ETSGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKK--RTPNQRGVGVGPVPAG--- 505
TS +K V +AV+ G + ++ ++AL +K + +R + +P
Sbjct: 763 ITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYIESLPTSGSC 822
Query: 506 ----SSLPPPGASINFTNLGE---SFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGG 558
SS+P P SIN + T+ LL AT FS ++ +G G++++ L G
Sbjct: 823 SWKLSSVPEP-LSINVATFEKPLRKLTFAHLLEATNGFSAETMVGSGGFGEVYKAQLRDG 881
Query: 559 IPVVIKR-IDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDL 617
V IK+ I + ++ E++ K+ H LVPLLG+C E E+ LVY+YM G L
Sbjct: 882 SVVAIKKLIRITGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGE-ERLLVYEYMKWGSL 940
Query: 618 SSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677
+ L+ K++ + + L+W R KIAIGAA GL++LHH C +HRD+++S++LLD+ F
Sbjct: 941 ETVLHEKSSKKGGIY-LNWAARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDEDF 999
Query: 678 EVRL 681
E R+
Sbjct: 1000 EARV 1003
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 170/576 (29%), Positives = 281/576 (48%), Gaps = 45/576 (7%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
L G IP +G LD+ + S+SG IP L L L N L+G IP L
Sbjct: 391 LEGKIPPLIGF-YSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKT 449
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248
L+ L L N LTG++P L+NL++L++ N+L+G+I LG L L+ L ++NN
Sbjct: 450 CKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANN 509
Query: 249 SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308
+ IP ++G+L +V ++S N L+G +P EL ++Q+ + N SG ++ L
Sbjct: 510 NFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQ 569
Query: 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNIS 368
V L+I+ L N TG P + +L L + N + +P + + + LNIS
Sbjct: 570 LV-YLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNIS 628
Query: 369 QNMFYGGLTPVLGRFRLVD---LSGNYFEGRVPEYVHSNASSL-----DSNCLQNVPNQR 420
N G + LG ++++ L+ N G +P + + S L ++N + VP+
Sbjct: 629 HNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTA 688
Query: 421 TL--VDCSSFYAARGLSFDNFGRPNATQPPPPET--------SGDSNRKIIVLSAVLGGF 470
+D S+F GL N R + QP P + +G +KI+ ++ ++ G
Sbjct: 689 VFQRMDSSNFAGNHGLC--NSQRSHC-QPLVPHSDSKLNWLINGSQRQKILTITCIVIGS 745
Query: 471 GLIVLLVLLALLALCFC-KKRTPNQRGVGVGPVPAGSSLPPPGASINFTNLGESFTYQQL 529
+ L+ L LC+ K+R P A P ++ + FTYQ L
Sbjct: 746 -----VFLITFLGLCWTIKRREP--------AFVALEDQTKPDVMDSYYFPKKGFTYQGL 792
Query: 530 LAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQ---SVKTEAYLLELDFFSKV 586
+ AT +FS+ ++ G G +++ + GG + +K+++ + + ++ E+ K+
Sbjct: 793 VDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGEGASSDNSFRAEISTLGKI 852
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646
H +V L G C +N L+Y+YM G L L R LDW R +IA+GA
Sbjct: 853 RHRNIVKLYGFCY-HQNSNLLLYEYMSKGSLGEQLQRGEKN----CLLDWNARYRIALGA 907
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
AEGL YLHH+C VHRD+++++ILLD++F+ +G
Sbjct: 908 AEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVG 943
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 181/595 (30%), Positives = 289/595 (48%), Gaps = 42/595 (7%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
+ LT L F+ L G+IP+ +G + Q LD+ I+G IP+++G L + +L
Sbjct: 211 MCQLTGLWYFDVRGNNLTGTIPESIGN-CTSFQILDISYNQITGEIPYNIGFL-QVATLS 268
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
L N LTG IP +G + L+VLDLS N L G IP G L L + N LTG IP
Sbjct: 269 LQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPS 328
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
LG +S+L YL +++N L +IP +LG L+ L +L+L+ N L G +PS + +L +F
Sbjct: 329 ELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFN 388
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352
+ N LSG++ + F + L + L N F G P L + L LD+S NNF+G +P
Sbjct: 389 VHGNLLSGSIPL-AFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIP 447
Query: 353 NSRSNVNTSTVELNISQNMFYGGLTPVLGRFR---LVDLSGNYFEGRVPEYVHSNASSLD 409
+ ++ + LN+S+N G L G R ++D+S N G +P + +
Sbjct: 448 LTLGDLEHLLI-LNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNS 506
Query: 410 SNCLQ-----NVPNQRTLVDCSSFYAARGLSFDNFG-----RPNATQPPPPETSGDSNRK 459
+P+Q L +C + +SF+N N ++ P G+
Sbjct: 507 LILNNNKLHGKIPDQ--LTNCFTL-VNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLC 563
Query: 460 IIVLSAVLG----------GFGLIVLLVLLALLALCFCKKRTPNQRGVGVGPVPAGSSLP 509
+ ++ G G + ++L ++ LL + F Q+ + GSS
Sbjct: 564 GNWVGSICGPLPKSRVFSRGALICIVLGVITLLCMIFLAVYKSMQQK----KILQGSSKQ 619
Query: 510 PPG-ASINFTNLGESF-TYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRID 567
G + ++ + T+ ++ T + ++ +I G S +++ L+ P+ IKR+
Sbjct: 620 AEGLTKLVILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSRPIAIKRLY 679
Query: 568 LQSVKT-EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTN 626
Q + EL+ + H +V L G+ + L Y YM NG L L+
Sbjct: 680 NQYPHNLREFETELETIGSIRHRNIVSLHGYALSPTG-NLLFYDYMENGSLWDLLHGSLK 738
Query: 627 TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
LDW TRLKIA+GAA+GL+YLHH+CT +HRD+++S+ILLD+ FE L
Sbjct: 739 K----VKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHL 789
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 199/623 (31%), Positives = 277/623 (44%), Gaps = 113/623 (18%)
Query: 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSD 175
LT L+ N + + G IP LG +L LDL S ++ G IP + L L L LS
Sbjct: 495 LTSLSVLNLNANMFQGKIPVELGD-CTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSY 553
Query: 176 NGLTGTIPS------------------------------------SLGQLSVLSVLDLSR 199
N L+G+IPS LG+ VL + LS
Sbjct: 554 NNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSN 613
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N L+G IP S L NL+ LD+S N LTGSIP +G KLQ LN++NN L IP G
Sbjct: 614 NHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFG 673
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L SLV L+L+ N L G VP+ L L+ L + N LSG LS L T+ +L + +
Sbjct: 674 LLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSEL-STMEKLVGLYIE 732
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV 379
QN FTG P L ++ QL LD+S N +G +P T +
Sbjct: 733 QNKFTGEIPSELGNLTQLEYLDVSENLLSGEIP------------------------TKI 768
Query: 380 LG--RFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFD 437
G ++L+ N G VP D C + L+ + R + D
Sbjct: 769 CGLPNLEFLNLAKNNLRGEVPS---------DGVCQD---PSKALLSGNKELCGRVVGSD 816
Query: 438 NFGRPNATQPPPPETSGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKK-------- 489
+ G R ++ ++ GF +IV + + +L K+
Sbjct: 817 C------------KIEGTKLRSAWGIAGLMLGFTIIVFVFVFSLRRWAMTKRVKQRDDPE 864
Query: 490 RTPNQRGVGVGP----VPAGSSLPPPGASINFTNLGESFTYQQL---LAATGDFSDANLI 542
R R G +GS P SIN + +L + AT FS N+I
Sbjct: 865 RMEESRLKGFVDQNLYFLSGSRSREP-LSINIAMFEQPLLKVRLGDIVEATDHFSKKNII 923
Query: 543 KNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEA---YLLELDFFSKVSHARLVPLLGHCM 599
+G G +++ L G V +K+ L KT+ ++ E++ KV H LV LLG+C
Sbjct: 924 GDGGFGTVYKACLPGEKTVAVKK--LSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCS 981
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTL 659
E EK LVY+YM NG L L +T L+ LDW RLKIA+GAA GL++LHH
Sbjct: 982 FSE-EKLLVYEYMVNGSLDHWLRNQTGM---LEVLDWSKRLKIAVGAARGLAFLHHGFIP 1037
Query: 660 PFVHRDVQASSILLDDKFEVRLG 682
+HRD++AS+ILLD FE ++
Sbjct: 1038 HIIHRDIKASNILLDGDFEPKVA 1060
|
Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 199/617 (32%), Positives = 293/617 (47%), Gaps = 75/617 (12%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
L G IP +G + L LDL +SG IP LGNLT LYL N LTG+IP LG
Sbjct: 271 LSGKIPSVIGL-MQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGN 329
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248
+S L L+L+ N LTG+IP G L +L L++++N L G IP L + + L LNV N
Sbjct: 330 MSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGN 389
Query: 249 SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308
+ +IP L+S+ L+LS N++ G +P EL + +L + NN ++G + +L
Sbjct: 390 KFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSL-G 448
Query: 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNIS 368
+ L + L +N TG P ++ + +D+S N+ +GP+P ELN
Sbjct: 449 DLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPE----------ELNQL 498
Query: 369 QNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQ----NVPNQRTLVD 424
QN+ L+ L N G N SL +NCL NV + + D
Sbjct: 499 QNII------------LLRLENNNLTG--------NVGSL-ANCLSLTVLNVSHNNLVGD 537
Query: 425 CSSFYAARGLSFDNF-GRPNATQPPPPETSGDSNRKI---IVLSAVLG-GFGLIVLLVLL 479
S D+F G P DS R + I +A+LG G +V+L L+
Sbjct: 538 IPKNNNFSRFSPDSFIGNPGLCGSWLNSPCHDSRRTVRVSISRAAILGIAIGGLVIL-LM 596
Query: 480 ALLALCFCKKRTPNQRGVGVGPVPAGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDA 539
L+A C P G PV + P I N+ Y+ ++ T + S+
Sbjct: 597 VLIAACRPHNPPPFLDGSLDKPVTYST----PKLVILHMNMA-LHVYEDIMRMTENLSEK 651
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRI---DLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
+I +G S +++ +L+ PV IKR+ + QS+K + EL+ S + H LV L
Sbjct: 652 YIIGHGASSTVYKCVLKNCKPVAIKRLYSHNPQSMK--QFETELEMLSSIKHRNLVSLQA 709
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
+ + L Y Y+ NG L L+ T ++LDW TRLKIA GAA+GL+YLHH+
Sbjct: 710 YSLSHLG-SLLFYDYLENGSLWDLLHGPTKK----KTLDWDTRLKIAYGAAQGLAYLHHD 764
Query: 657 CTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQS------------RITR 701
C+ +HRDV++S+ILLD E RL G +C +H S R
Sbjct: 765 CSPRIIHRDVKSSNILLDKDLEARLTDFGIAKSLCVS--KSHTSTYVMGTIGYIDPEYAR 822
Query: 702 LLRLPQSSEQGSSGMVI 718
RL + S+ S G+V+
Sbjct: 823 TSRLTEKSDVYSYGIVL 839
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | ||||||
| 255536845 | 901 | lrr receptor protein kinase, putative [R | 0.937 | 0.796 | 0.692 | 0.0 | |
| 224103409 | 893 | predicted protein [Populus trichocarpa] | 0.873 | 0.749 | 0.730 | 0.0 | |
| 224080351 | 697 | predicted protein [Populus trichocarpa] | 0.877 | 0.964 | 0.709 | 0.0 | |
| 449462274 | 896 | PREDICTED: probable LRR receptor-like se | 0.870 | 0.744 | 0.674 | 0.0 | |
| 359475328 | 908 | PREDICTED: probable LRR receptor-like se | 0.911 | 0.768 | 0.688 | 0.0 | |
| 356517903 | 898 | PREDICTED: probable LRR receptor-like se | 0.934 | 0.797 | 0.630 | 0.0 | |
| 356509565 | 900 | PREDICTED: probable LRR receptor-like se | 0.934 | 0.795 | 0.625 | 0.0 | |
| 297836662 | 907 | hypothetical protein ARALYDRAFT_480795 [ | 0.907 | 0.766 | 0.622 | 0.0 | |
| 147818758 | 843 | hypothetical protein VITISV_008690 [Viti | 0.877 | 0.797 | 0.631 | 0.0 | |
| 225458279 | 903 | PREDICTED: probable LRR receptor-like se | 0.877 | 0.744 | 0.631 | 0.0 |
| >gi|255536845|ref|XP_002509489.1| lrr receptor protein kinase, putative [Ricinus communis] gi|223549388|gb|EEF50876.1| lrr receptor protein kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/726 (69%), Positives = 582/726 (80%), Gaps = 8/726 (1%)
Query: 17 MVDQRSVVMFFVMFLLL-FEPTFEQQLERLSSRTELAALFELRSSLGLRRRDWPRKVDPC 75
MVDQR V+ + LLL F+P+F QQ+E L+S E AAL +LRSSLG+R ++WPRK +PC
Sbjct: 1 MVDQRIVIALAFLLLLLKFQPSF-QQVETLNSPVERAALLQLRSSLGIRSKEWPRKTNPC 59
Query: 76 LVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPD 135
W G+ C NGSV GINISGFRRTRLGSQNP+F DALVNLTHL SFNASRF LPGSIPD
Sbjct: 60 SNWTGISCTNGSVSGINISGFRRTRLGSQNPQFVVDALVNLTHLISFNASRFQLPGSIPD 119
Query: 136 WLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195
W GQ L +LQALDL C I IP SLGNLTNLTSLYLS N L G+IPSSLGQL +LS+L
Sbjct: 120 WFGQSLGSLQALDLSFCDIRNAIPASLGNLTNLTSLYLSGNRLVGSIPSSLGQLVLLSIL 179
Query: 196 DLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP 255
+LS+NSLT +IP SFG L NL+ LDISSN+L+GSIPPG+G L KLQYLN+SNN L+S IP
Sbjct: 180 NLSQNSLTVSIPVSFGFLANLTILDISSNFLSGSIPPGIGMLLKLQYLNLSNNQLSSPIP 239
Query: 256 AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQI 315
AQLGDL LVDLDLS NSLSGSVP+ELRGLR+L++ +IGNN L G+L VNLF QLQI
Sbjct: 240 AQLGDLVQLVDLDLSFNSLSGSVPAELRGLRNLKRMLIGNNMLVGSLPVNLFSASIQLQI 299
Query: 316 IVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGG 375
+V++ NGFTG P+VLW+MP L LDIS NNFTG LPN N NTST ELNIS N+ YG
Sbjct: 300 VVMKNNGFTGSVPNVLWTMPGLSFLDISGNNFTGLLPNVTFNANTSTAELNISGNLLYGF 359
Query: 376 LTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLS 435
L P+L RF VDLSGNYFEG+V + V NAS L SNCLQNV NQR+L +C+SFYA RGL
Sbjct: 360 LNPILRRFSFVDLSGNYFEGKVLDLVPDNASLL-SNCLQNVSNQRSLSECTSFYAERGLI 418
Query: 436 FDNFGRPNATQPPPPETSGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKRTPNQR 495
FDNFG PN+TQPP E+ G SNR +I+L++VLGG GL+VLL++L LL +C CK+ T NQR
Sbjct: 419 FDNFGLPNSTQPPAGESEGKSNRMVIILASVLGGVGLVVLLIILVLLFVCHCKRGTANQR 478
Query: 496 GVGVGPVPAGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGIL 555
G GVGPVPAGSS PPP A+I+ ++LG++FTYQQLL AT DFSD NLIK+GHSGDL+RG+L
Sbjct: 479 GTGVGPVPAGSSPPPPEAAIDLSSLGDTFTYQQLLQATSDFSDENLIKHGHSGDLYRGVL 538
Query: 556 EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNG 615
E GI VVIKR+ LQS+K E+Y++ELD FSKVSH RLVP LGHC+ ENEKFLVYKYMPN
Sbjct: 539 ENGISVVIKRVHLQSIKKESYVMELDIFSKVSHPRLVPFLGHCLANENEKFLVYKYMPNR 598
Query: 616 DLSSSLYRKTNTEDD-LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674
DLSSSLYRKT+++DD LQSLDWITRLKIA GAAE LS LHHECT P VHRDVQASSILLD
Sbjct: 599 DLSSSLYRKTSSDDDSLQSLDWITRLKIATGAAEALSCLHHECTPPIVHRDVQASSILLD 658
Query: 675 DKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGN 734
DKFEVRLGSLSEVC Q GDAHQSRITRLLRLPQSSEQ +SG + + + +Y G
Sbjct: 659 DKFEVRLGSLSEVCPQEGDAHQSRITRLLRLPQSSEQSTSGSLTAM----CAYDVYCFGK 714
Query: 735 PLFSAI 740
L +
Sbjct: 715 VLLELV 720
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103409|ref|XP_002313045.1| predicted protein [Populus trichocarpa] gi|222849453|gb|EEE87000.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/675 (73%), Positives = 557/675 (82%), Gaps = 6/675 (0%)
Query: 35 EPTFEQQL-ERLSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINI 93
E TFEQQ ERL+S E AAL LRSSLGLR RDWP K DPC +WNG++C+NGSV INI
Sbjct: 20 ESTFEQQQQERLTSPIERAALLGLRSSLGLRSRDWPIKADPCSIWNGIKCENGSVSEINI 79
Query: 94 SGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS 153
SGF+RTRLGSQNP+F D+LVNLT L SFNAS F LPGSIPDW GQ+L +LQALDL SC
Sbjct: 80 SGFKRTRLGSQNPQFRVDSLVNLTRLKSFNASGFYLPGSIPDWFGQRLVSLQALDLSSCL 139
Query: 154 ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLL 213
IS IP SLGNLT+LT LYL DN LTG IPSSLGQL LSVLDLS N TG+IP SFG L
Sbjct: 140 ISNAIPGSLGNLTSLTVLYLHDNNLTGMIPSSLGQLVGLSVLDLSSNMFTGSIPVSFGSL 199
Query: 214 KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
+NL+ LDIS N+L GS+PPG+G LSKLQYLN+S N L+SSIPAQLGDL +LVDLDLS NS
Sbjct: 200 QNLTRLDISMNFLFGSVPPGIGMLSKLQYLNLSINDLSSSIPAQLGDLRNLVDLDLSFNS 259
Query: 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWS 333
LSGS+P+ELRGLR+LQ+ +IG N L G+L VNLFP SQLQ +VL+ NGF G PDVLWS
Sbjct: 260 LSGSLPAELRGLRNLQRMLIGINLLGGSLPVNLFPVPSQLQTVVLKSNGFIGAVPDVLWS 319
Query: 334 MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYF 393
MP+LRLLDIS NNFTG L N+ N NT+T ELN+SQN+FYGGLTPVL RF VDLSGNYF
Sbjct: 320 MPRLRLLDISGNNFTGMLSNASLNTNTTTAELNVSQNLFYGGLTPVLRRFSFVDLSGNYF 379
Query: 394 EGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETS 453
EGRVP+YV NA SL SNCLQN+ NQR+L+ C+SFY +GL FDNFG PN+TQPP E S
Sbjct: 380 EGRVPDYVSDNA-SLVSNCLQNLSNQRSLLGCTSFYTEKGLIFDNFGLPNSTQPPARENS 438
Query: 454 GDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKR-TPNQRGVGVGPVP---AGSSLP 509
G S RK+I+L +VLGGFGLI+LLV+L +L L F +K QRGVGVGP +GSS P
Sbjct: 439 GKSKRKVIILVSVLGGFGLILLLVILIVLLLFFIRKTGNKTQRGVGVGPATPVPSGSSPP 498
Query: 510 PPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQ 569
PPG SI+F++LG+ +TYQQLL ATGDF D NLIK GHSGDL++GI E GIPVVIK+IDLQ
Sbjct: 499 PPGVSIDFSSLGDIYTYQQLLLATGDFGDVNLIKYGHSGDLYKGISESGIPVVIKKIDLQ 558
Query: 570 SVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTED 629
S + EAYLLELDFFSKVS+ RLVPLLGHC+E+ENEKFL+YK+MPNGDLSSSLYRKTN+ED
Sbjct: 559 SHRKEAYLLELDFFSKVSNPRLVPLLGHCLEKENEKFLIYKHMPNGDLSSSLYRKTNSED 618
Query: 630 DLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689
L+SLDWITRLKIAIGAAEGLSYLHHECT P VHRDVQASSILLDDKFEVRLGSLSEVC
Sbjct: 619 GLKSLDWITRLKIAIGAAEGLSYLHHECTPPIVHRDVQASSILLDDKFEVRLGSLSEVCT 678
Query: 690 QGGDAHQSRITRLLR 704
Q GD H SRITR LR
Sbjct: 679 QEGDTHHSRITRFLR 693
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080351|ref|XP_002306108.1| predicted protein [Populus trichocarpa] gi|222849072|gb|EEE86619.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/679 (70%), Positives = 560/679 (82%), Gaps = 7/679 (1%)
Query: 35 EPTFEQQL-ERLSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINI 93
E TFEQQ ERL+S E AAL ELRSSLGLR +DWPRK DPC VWNG++C+NGSV INI
Sbjct: 20 ESTFEQQQQERLNSPIERAALLELRSSLGLRSKDWPRKADPCSVWNGIKCENGSVSEINI 79
Query: 94 SGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS 153
SGFRRTRLGSQNP+F+ D+LVNLT L SFNAS F LPGSIPDW GQ+L +LQ LDL SC
Sbjct: 80 SGFRRTRLGSQNPQFSVDSLVNLTRLKSFNASGFYLPGSIPDWFGQRLVSLQVLDLSSCL 139
Query: 154 ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLL 213
IS IP SLGNLT+LT LYL DN TG IPSSLG L LSVLDLS N TG+IP SFG L
Sbjct: 140 ISNAIPESLGNLTSLTGLYLHDNNFTGMIPSSLGLLVGLSVLDLSANKFTGSIPVSFGSL 199
Query: 214 KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
+NL+ LDIS N+L GSIP G+G LSKLQYLN+S+N+L+SSIP QLGDL +L D DLS NS
Sbjct: 200 QNLTRLDISKNFLFGSIPLGIGMLSKLQYLNLSSNNLSSSIPPQLGDLSNLADFDLSFNS 259
Query: 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWS 333
LSGS+P+ELRGLR+LQ+ +IGNN L G L VNLFP SQLQ +VL++NGF+G PD+LWS
Sbjct: 260 LSGSLPAELRGLRNLQRMLIGNNLLGGFLPVNLFPVPSQLQTVVLKRNGFSGSVPDLLWS 319
Query: 334 MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYF 393
+PQLRLLDIS NNFTG LPN N N S+ ELNIS+N+FYGGLTP L RF +VDLSGNYF
Sbjct: 320 IPQLRLLDISGNNFTGILPNGSLNANASSAELNISENLFYGGLTPTLRRFLVVDLSGNYF 379
Query: 394 EGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETS 453
EG VP+YV NA SL SNCLQN NQR+L+DC+SFY +GL+FDNFG PN+TQPP E +
Sbjct: 380 EGTVPDYVSDNA-SLVSNCLQNSSNQRSLLDCTSFYTEKGLTFDNFGLPNSTQPPAGENT 438
Query: 454 GDSNRKIIVL-SAVLGGFGLIVLLVLLALLALCFCKKRTPNQRGVGVGPVP---AGSSLP 509
G +N+K+I+ S + G +++L++LL LL C K+ T Q GVGVGPV +GSS P
Sbjct: 439 GKNNKKVIIWASVLGGVGLILLLVILLVLLLFCIRKRGTMTQGGVGVGPVTPVPSGSSPP 498
Query: 510 PPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQ 569
PPG SI+F++LG++FTYQQLL ATGDF D NLIK+GHSGDL++GILE GIPVVIK+IDLQ
Sbjct: 499 PPGVSIDFSSLGDTFTYQQLLLATGDFRDVNLIKHGHSGDLYKGILESGIPVVIKKIDLQ 558
Query: 570 SVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTED 629
S + EAYLLELDF+SKVSH+RLVPLLGHC+E+ENEKFL+YK++PNGDLSSSL+RKT++ED
Sbjct: 559 SHRKEAYLLELDFYSKVSHSRLVPLLGHCLEKENEKFLIYKHIPNGDLSSSLFRKTDSED 618
Query: 630 D-LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688
D L+SLDWITRLKIAIGAAE LSYLHHEC P VHRDVQASSILLDDKFEVRLGSLSEVC
Sbjct: 619 DGLKSLDWITRLKIAIGAAESLSYLHHECMPPIVHRDVQASSILLDDKFEVRLGSLSEVC 678
Query: 689 AQGGDAHQSRITRLLRLPQ 707
Q GD HQSRI+RLLRLPQ
Sbjct: 679 TQEGDTHQSRISRLLRLPQ 697
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462274|ref|XP_004148866.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Cucumis sativus] gi|449507355|ref|XP_004163008.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/675 (67%), Positives = 537/675 (79%), Gaps = 8/675 (1%)
Query: 34 FEPTFEQQLERLSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINI 93
FEPTF+Q LSSR E AL LRSSLGLR +DWP K DPC VW G+ CQNG VVGIN+
Sbjct: 18 FEPTFQQ----LSSRAERVALLNLRSSLGLRSKDWPIKADPCSVWRGIECQNGRVVGINV 73
Query: 94 SGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS 153
SGFRRTRLGS +P+F DAL NLT L SFNAS FLLPG IPDW+G L +LQ LDLRSCS
Sbjct: 74 SGFRRTRLGSLHPQFVVDALANLTLLQSFNASNFLLPGVIPDWVGSTLKSLQVLDLRSCS 133
Query: 154 ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLL 213
I G IP S GNLTNLT+LYLS+N L GTIP+S+GQL LSVLDLS N LTG+IP SF L
Sbjct: 134 ILGSIPLSFGNLTNLTALYLSNNKLNGTIPTSIGQLVQLSVLDLSHNELTGSIPLSFSSL 193
Query: 214 KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
NLS LD+SSN L GSIPP +G++ +LQ LN+S+N++ SS+PA LGDL LVDLDLS N
Sbjct: 194 ANLSFLDLSSNGLDGSIPPLIGSIRQLQSLNLSSNNITSSLPASLGDLSRLVDLDLSFNK 253
Query: 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWS 333
SG +P++LR + SLQ+ VIGNN L G+L +LFP++ QLQ + L NGFTG PDVL+
Sbjct: 254 FSGLLPTDLRSMSSLQRMVIGNNLLGGSLPEDLFPSLRQLQELTLNDNGFTGAVPDVLFL 313
Query: 334 MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYF 393
+P LRLLDIS NNFTG LPNS N++ LNIS+NMFYG L PV+GRF VDLSGNYF
Sbjct: 314 IPGLRLLDISGNNFTGMLPNSSLASNSTGGALNISRNMFYGSLMPVIGRFSAVDLSGNYF 373
Query: 394 EGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETS 453
EGR+P +V +A SL+SNCLQNV +QRTL DCSSFYA +GLSFDNFG+PN+ QPP E S
Sbjct: 374 EGRIPNFVPRDA-SLESNCLQNVSSQRTLADCSSFYAEKGLSFDNFGKPNSVQPPLAEKS 432
Query: 454 GDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKRTP-NQRGVGVGPVPAGSSLPPPG 512
+N+++I L +V+GG G IVL++L+ LL L KR NQRGV VGP+P GSS PP G
Sbjct: 433 SKNNKRVI-LGSVIGGVGFIVLVLLVVLLFLYIGGKRASGNQRGVSVGPIPTGSSEPPSG 491
Query: 513 ASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK 572
SINF +LGESFT +QLL A+G SD NLIK GHSGDLFRG+L+ G VVIK+IDL++VK
Sbjct: 492 LSINFASLGESFTDKQLLQASGGLSDENLIKLGHSGDLFRGVLDNGANVVIKKIDLRTVK 551
Query: 573 TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDD-L 631
E YL+ELD FSKVSH RLVP LGHC++ E+EK+LVYK+MPNGDL+SSL RKTN +D+ +
Sbjct: 552 KETYLVELDLFSKVSHTRLVPFLGHCLDNEHEKYLVYKHMPNGDLASSLVRKTNVDDENI 611
Query: 632 QSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691
QSLDWITRLKIA+GAAEGL+Y+HHEC+ P VHRDVQASSILLDDKFEVRLGSLSEVCAQ
Sbjct: 612 QSLDWITRLKIALGAAEGLAYMHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVCAQD 671
Query: 692 GDAHQSRITRLLRLP 706
GD+HQ+RI+RLLRLP
Sbjct: 672 GDSHQNRISRLLRLP 686
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475328|ref|XP_003631657.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/704 (68%), Positives = 564/704 (80%), Gaps = 6/704 (0%)
Query: 17 MVDQRSVVMFF----VMFLLLFEPTFEQQLERLSSRTELAALFELRSSLGLRRRDWPRKV 72
MV++RS V+ F V+ LLL E TFEQ RLSS E AL ELRSSLGLR ++WP K
Sbjct: 1 MVNRRSRVVTFGLLLVVLLLLVESTFEQTQARLSSSAEFTALLELRSSLGLRSKEWPIKS 60
Query: 73 DPCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGS 132
DPC W GV+C+NGSVVGI+ISGFRRTRLGS+NP FA DAL NLT L SFNAS FLLPGS
Sbjct: 61 DPCWFWRGVQCRNGSVVGIDISGFRRTRLGSRNPEFAVDALANLTLLESFNASMFLLPGS 120
Query: 133 IPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192
IPDW G++L +L+ LDLRSCSI G IP SLGNL+NL +L+LS N LTG IPSSLGQLS L
Sbjct: 121 IPDWFGERLSSLKVLDLRSCSIIGPIPSSLGNLSNLNALFLSYNNLTGIIPSSLGQLSHL 180
Query: 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS 252
SVLDLS+N TG+IP+SFG +NLS L+IS N+L+ +IPPG+G +S LQYLN+S NSL+S
Sbjct: 181 SVLDLSQNRFTGSIPSSFGSFRNLSVLNISVNFLSDTIPPGIGNISSLQYLNLSGNSLSS 240
Query: 253 SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQ 312
SIPAQLGDLD+LV+LDLS NSLSGS+P++ RGL++LQK I N L+G+L NLFP +SQ
Sbjct: 241 SIPAQLGDLDNLVELDLSFNSLSGSLPADFRGLKNLQKMAIRKNSLAGSLPGNLFPALSQ 300
Query: 313 LQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF 372
LQ++VL QN FTG PDVLW+MP L LD+S NNFT LPN N N + N+SQNMF
Sbjct: 301 LQLVVLSQNAFTGNLPDVLWTMPNLSFLDVSGNNFTSVLPNFSFNGNATASVFNLSQNMF 360
Query: 373 YGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAAR 432
YGGL + RF +D+S NYFEGRV +Y SNA S NCLQNV NQRTL C+SFYA +
Sbjct: 361 YGGLPSLPRRFSSIDMSQNYFEGRVRDYAPSNA-SFGMNCLQNVSNQRTLEVCASFYAEK 419
Query: 433 GLSFDNFGRPNATQPPPPETSGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKRTP 492
GL FDNFG+PN+TQP +TSG SN+K I+L+ VLGG GLI+ LVL+ +L LC +K
Sbjct: 420 GLPFDNFGQPNSTQPTTNDTSGKSNKKWIILAGVLGGLGLILFLVLVLVLFLCCWRKGGT 479
Query: 493 NQRGVGVGPVPAGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFR 552
+QRG GVGPVPAG S PPPG INF++LGE+FTYQQ+L ATGDFSDAN IK+GHSGDL+
Sbjct: 480 SQRGNGVGPVPAGGSPPPPGMPINFSSLGEAFTYQQILQATGDFSDANFIKHGHSGDLYW 539
Query: 553 GILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612
GILEGG+ +VIKRIDL S+K E YLLELDFFSKVSH R VPLLG C+E +NEKFLVYKYM
Sbjct: 540 GILEGGVRIVIKRIDLSSIKKETYLLELDFFSKVSHTRFVPLLGQCLENDNEKFLVYKYM 599
Query: 613 PNGDLSSSLYRKTNTEDD-LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSI 671
PNGDLS+SL+RKTN EDD LQSLDWITRLKIAIGAAE LS+LHHEC P VHRDVQASSI
Sbjct: 600 PNGDLSNSLFRKTNLEDDGLQSLDWITRLKIAIGAAEALSHLHHECNPPLVHRDVQASSI 659
Query: 672 LLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSG 715
LLDDKFEVRLGSLSEVC+Q GD HQ+ ITR LRLPQ+SEQG SG
Sbjct: 660 LLDDKFEVRLGSLSEVCSQEGDTHQNVITRFLRLPQTSEQGPSG 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517903|ref|XP_003527625.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/730 (63%), Positives = 545/730 (74%), Gaps = 14/730 (1%)
Query: 40 QQLERLSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRT 99
+Q E LSS E +L ELR SLGLR ++WPRK DPCL+W G+ CQNG VVGINISGFRRT
Sbjct: 19 EQNEPLSSVEERESLLELRGSLGLRSKEWPRKPDPCLIWVGITCQNGRVVGINISGFRRT 78
Query: 100 RLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIP 159
RLG +NP+FA DAL N T L SFNAS F LPGSIPDW G LP+L LDLRSCSI IP
Sbjct: 79 RLGRRNPQFAVDALANFTLLRSFNASNFPLPGSIPDWFGLSLPSLTVLDLRSCSIVDAIP 138
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
+LGNLTNLTSLYLSDN L G +P +LGQL LSVLDLSRNSLTG+IP SF L NLSSL
Sbjct: 139 STLGNLTNLTSLYLSDNNLIGNVPGTLGQLLALSVLDLSRNSLTGSIPASFAFLGNLSSL 198
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS-LSGSV 278
D+S+N+L+G+IP G+GTLS+LQYLN+SNN L SS+PA+LG L SLVDLDLS NS + G +
Sbjct: 199 DMSANFLSGAIPTGIGTLSRLQYLNLSNNGL-SSLPAELGGLASLVDLDLSENSFVGGGL 257
Query: 279 PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR 338
P + LR+L++ ++ N+ L+G L LF LQ +VLRQN F+G P LWS+P+L
Sbjct: 258 PPDFTRLRNLRRMILANSMLTGALPGRLFS--DSLQFLVLRQNNFSGSLPVELWSLPRLS 315
Query: 339 LLDISRNNFTGPLPNSRSNVNTSTVE-LNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRV 397
LD+S NNF+G LPNS S N +T LNIS N FYGGLTP L RF VDLS NYFEG++
Sbjct: 316 FLDVSANNFSGLLPNSTSAANNATAAVLNISHNKFYGGLTPALRRFGFVDLSRNYFEGKI 375
Query: 398 PEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETSGDSN 457
+Y+ + SLD NCLQ NQR+ ++C+SFYA RGLSFDNFG+PN T+PP E+SG SN
Sbjct: 376 LDYMLN--VSLDINCLQKATNQRSTMECASFYAERGLSFDNFGQPNTTKPPTAESSGKSN 433
Query: 458 RKIIVLSAVLGGFGLIVLLVLLALLALCFCKKR-TPNQRGVGVGPVPAGSSLPPPGASIN 516
+ I+L+AV GG GLI LLVLL +L L +KR NQRG GVGP P GSS P PG ++
Sbjct: 434 KTKIILAAVFGGVGLIALLVLLLVLLLLCARKRGNSNQRGNGVGPAPVGSSPPNPGVLVD 493
Query: 517 FTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAY 576
F N+G+SFTY QLL ATGDF+DANLIK+GH+GD F G+LE GIPVVIKRID++S K EAY
Sbjct: 494 FPNVGDSFTYHQLLQATGDFNDANLIKHGHTGDFFNGVLESGIPVVIKRIDMRSTKKEAY 553
Query: 577 LLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTED-DLQSLD 635
L ELDFF+KVSH R VPLLGHC+E ENEKFLVYK M NGDLS+ LY K +ED LQSLD
Sbjct: 554 LSELDFFNKVSHQRFVPLLGHCLENENEKFLVYKRMTNGDLSNCLYYKNTSEDGTLQSLD 613
Query: 636 WITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH 695
WITRLKIA GAAE LSYLHHEC P VHRD+QASSILLDDK+EVRLGSLSE CAQ GD H
Sbjct: 614 WITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSESCAQEGDIH 673
Query: 696 QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN-HLNLSSRFGVK 754
QS+ITR LRLPQSSEQG+SG + ++ +Y G L + ++ +S VK
Sbjct: 674 QSKITRFLRLPQSSEQGTSGSSTSI----CVYDVYCFGKVLLELVTGKLGMSAASDTEVK 729
Query: 755 QQTTIIKLCV 764
+ I C+
Sbjct: 730 EWFDQILPCI 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509565|ref|XP_003523518.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/731 (62%), Positives = 543/731 (74%), Gaps = 15/731 (2%)
Query: 40 QQLERLSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRT 99
+Q+E LSS E +L ELR+SLGLR ++WPRK DPCL+W G+ CQNG VVGINISGFRRT
Sbjct: 19 EQIEPLSSAEERESLLELRASLGLRSKEWPRKPDPCLIWVGITCQNGRVVGINISGFRRT 78
Query: 100 RLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIP 159
R+G +NP+FA DAL N T L +FNAS F+L G IPDW G LP+L+ LDLR CSI IP
Sbjct: 79 RIGRRNPQFAVDALANFTLLQTFNASNFVLSGPIPDWFGLSLPSLRVLDLRFCSIVDAIP 138
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
+LGNLTNLT LYLSDN L G +P +LGQL LSVLDLSRNSLTG++P SF L NLSSL
Sbjct: 139 STLGNLTNLTGLYLSDNNLIGNVPGTLGQLLALSVLDLSRNSLTGSVPASFAFLSNLSSL 198
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG-SV 278
D+S+N+L+G++P G+GTLS+LQYLN+SNN LA S+PAQLG L SLVDLDLS NS G +
Sbjct: 199 DLSANFLSGAVPTGIGTLSRLQYLNLSNNGLA-SLPAQLGGLASLVDLDLSENSFVGVGL 257
Query: 279 PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR 338
P +L GLR+L++ ++ N+ LSG L LF LQ +VLRQN F+G P LWS+P+L
Sbjct: 258 PLDLTGLRNLRRMILANSMLSGVLPGRLFS--DSLQFLVLRQNNFSGSLPVELWSLPRLS 315
Query: 339 LLDISRNNFTGPLPNSRSNVNTSTVE-LNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRV 397
LD+S NNF+G LPNS S N +TV LNIS N FYGGLTP L RF VDLS NYFEG+V
Sbjct: 316 FLDVSANNFSGLLPNSSSAANNATVAVLNISHNKFYGGLTPALRRFAFVDLSSNYFEGKV 375
Query: 398 PEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPP-PPETSGDS 456
+++ + SLD NCLQN NQR+ V C+SFYA RGLSFDNFGRPN T+PP ++SG S
Sbjct: 376 LDFMRN--VSLDINCLQNATNQRSTVKCASFYAERGLSFDNFGRPNTTKPPAAAKSSGKS 433
Query: 457 NRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKR-TPNQRGVGVGPVPAGSSLPPPGASI 515
N+ I+L+AVLGG GLI +LV L +L L +KR NQRG GVGP P GSS P PG I
Sbjct: 434 NKTKIILAAVLGGVGLIAILVFLLVLLLLCARKRGNSNQRGNGVGPAPVGSSPPNPGVPI 493
Query: 516 NFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEA 575
+F N+G+SFTY QLL ATGDF+DANLIK+GH+GD F G+LE GIP+VIKRID +S K EA
Sbjct: 494 DFPNVGDSFTYHQLLQATGDFNDANLIKHGHTGDFFNGVLESGIPIVIKRIDTRSAKKEA 553
Query: 576 YLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDL-QSL 634
YL ELDFF+KVSH R VPLLGHC E ENEKFLVYK PNGDLS+ LY K +ED QSL
Sbjct: 554 YLSELDFFNKVSHQRFVPLLGHCFENENEKFLVYKRTPNGDLSNCLYYKNTSEDGTSQSL 613
Query: 635 DWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694
DWITRLKIA GAAE LSYLHHEC P VHRD+QASSILLDDK+EVRLGSLSEVCAQ D
Sbjct: 614 DWITRLKIATGAAEALSYLHHECVPPIVHRDIQASSILLDDKYEVRLGSLSEVCAQEADI 673
Query: 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN-HLNLSSRFGV 753
HQS+ITR LRLPQSSEQG+SG + + +Y G L + ++ +S V
Sbjct: 674 HQSKITRFLRLPQSSEQGTSGSSTSI----CAYDVYCFGKVLLELVTGKLGMSAASEAEV 729
Query: 754 KQQTTIIKLCV 764
K+ I C+
Sbjct: 730 KEWFDQILPCI 740
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836662|ref|XP_002886213.1| hypothetical protein ARALYDRAFT_480795 [Arabidopsis lyrata subsp. lyrata] gi|297332053|gb|EFH62472.1| hypothetical protein ARALYDRAFT_480795 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/708 (62%), Positives = 535/708 (75%), Gaps = 13/708 (1%)
Query: 17 MVDQRSVVMFFVMFLL---LFEPTFEQQLERLSSRTELAALFELRSSLGLRRRDWPRKVD 73
MVDQR + FV+ +L LF+ Q + + +E L LRSSLGLR DWP K D
Sbjct: 1 MVDQRRSALGFVLLMLCLVLFDGVVVGQTQ--TRFSEKLILLNLRSSLGLRGTDWPIKGD 58
Query: 74 PCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSI 133
PC+VW G++C+NGS++GINISGFRRTR+G QNP+FA D L NLT L+ FNAS LPG+I
Sbjct: 59 PCVVWRGIQCENGSIIGINISGFRRTRIGKQNPQFAVDPLRNLTRLSYFNASGLALPGTI 118
Query: 134 PDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193
P+W G L LQ LDL SCS+SGVIPF+LGNLT+L +L LS N LT +PSSLGQL LS
Sbjct: 119 PEWFGVSLLALQVLDLSSCSVSGVIPFTLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLS 178
Query: 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS 253
LDLSRNSLTG +P SF LKNL +LD+SSNYLTG IPPGLGTLSKL +LN S+NS +S
Sbjct: 179 ELDLSRNSLTGILPQSFSSLKNLLTLDVSSNYLTGPIPPGLGTLSKLLHLNFSSNSFSSP 238
Query: 254 IPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313
IP +LGDL +LVD DLS+NSLSGSVP ELR LR+LQ IG+N LSG L V+LF SQL
Sbjct: 239 IPPELGDLVNLVDFDLSINSLSGSVPQELRKLRNLQLMAIGDNLLSGTLPVDLFSAESQL 298
Query: 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFY 373
Q +VLR+NGF+G PDV WS+P+LR+LDI++NNFTG LPNS S + ++IS N FY
Sbjct: 299 QTLVLRENGFSGSLPDVCWSLPKLRILDIAKNNFTGMLPNSSSYPDQLAEMVDISSNTFY 358
Query: 374 GGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARG 433
G LTP+L RFR VDLSGNYFEG+VP+YV S+ SNCLQN Q+ CS+FY +RG
Sbjct: 359 GELTPILRRFREVDLSGNYFEGKVPDYVTGENVSVTSNCLQNERRQKPSAICSAFYKSRG 418
Query: 434 LSFDNFGRPNATQPPPPE-TSGDSNRKIIVLSAVLGGFGLIVLLVLLA-LLALCFCKKRT 491
L FD+FGRPN+TQP +SG S+R +I+L AV GG G I++ V+L +L LC +R
Sbjct: 419 LHFDDFGRPNSTQPTSKNASSGISHRTVIIL-AVAGGVGFILIFVILPIILVLCIRHRRR 477
Query: 492 PNQRGVGVGPVPAG--SSLPPPGA-SINFTNLGESFTYQQLLAATGDFSDANLIKNGHSG 548
QRG P PAG S PP GA + + + LG +F+Y+QLL AT +F+DANLIK+GHSG
Sbjct: 478 AAQRGNNDRPKPAGEASQQPPKGAQTFDLSRLGNAFSYEQLLQATEEFNDANLIKHGHSG 537
Query: 549 DLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608
+ FRG LE GIPVVIK+ID++ K+E Y+ EL+ FSK H RLVP LGHC+E E++KFLV
Sbjct: 538 NFFRGFLENGIPVVIKKIDVRESKSEGYISELELFSKAGHQRLVPFLGHCLENESQKFLV 597
Query: 609 YKYMPNGDLSSSLYRKTNTE-DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQ 667
YK+M +GDL+SSL+RK+ E D L+SLDWITRLKIA+GAAEGLSY HHEC+ P VHRDVQ
Sbjct: 598 YKFMRHGDLASSLFRKSENEGDGLKSLDWITRLKIALGAAEGLSYFHHECSPPLVHRDVQ 657
Query: 668 ASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSG 715
ASSILLDDKFEVRLGSLSEV AQ GDA+QSRI+RLLRLPQS+E SSG
Sbjct: 658 ASSILLDDKFEVRLGSLSEVYAQ-GDAYQSRISRLLRLPQSTEPSSSG 704
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818758|emb|CAN71800.1| hypothetical protein VITISV_008690 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/676 (63%), Positives = 526/676 (77%), Gaps = 4/676 (0%)
Query: 45 LSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQ 104
L + TE +ALF+LRSSLGLR +DWPR+ +PC W GV CQNG VVGI++SG +RT G
Sbjct: 32 LRNDTERSALFDLRSSLGLRAKDWPRRSEPCWNWTGVACQNGRVVGISVSGLQRTHAGRV 91
Query: 105 NPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN 164
NP+FA D+L NL+ LA+FN+S F LPGSIPDWLGQ L LQ LDLRS S+ G IP SLG+
Sbjct: 92 NPQFAVDSLANLSLLATFNSSGFELPGSIPDWLGQSLSALQVLDLRSASVKGPIPQSLGS 151
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
L +L SLYLS N LTG IPS LGQLS LSVL+LS+NSLTG+IP +F L NL+SLD+SSN
Sbjct: 152 LGSLHSLYLSGNSLTGAIPSQLGQLSALSVLNLSQNSLTGSIPQTFSTLSNLTSLDLSSN 211
Query: 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
YL+GS+P GL L+KLQ+LN+S+N L +SIP QLG L LV+LDLS+N+L G+VP +L G
Sbjct: 212 YLSGSVPSGLANLTKLQFLNLSSNILTASIPNQLGQLFQLVELDLSLNNLMGTVPVDLGG 271
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344
LRSLQK ++GNN L G+LS LF +++LQ +VL N G P VLWSM +LR LD+S
Sbjct: 272 LRSLQKMLLGNNGLQGSLSDKLFSNLTRLQFLVLSDNKIEGDIPGVLWSMHELRFLDVSG 331
Query: 345 NNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSN 404
NNFTG L N NVN++ N+S N+FYG L LG+F L+DLSGNYF+G+VP + +N
Sbjct: 332 NNFTGVLANLSWNVNSTNTMFNLSNNLFYGALPTPLGKFSLIDLSGNYFQGKVPNDIETN 391
Query: 405 ASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETSGDSNRK-IIVL 463
+SL+ NCLQ+V +QR+L DC FYA R LSFDNFG P+ QPP P +S +S+++ I +L
Sbjct: 392 -TSLNRNCLQSVLDQRSLEDCRLFYAERNLSFDNFGAPSPAQPPLPGSSTNSSKRWIFIL 450
Query: 464 SAVLGGFGLIVLLVLLALLALCFCKKRTPNQRGVG-VGPVPAGSSLPPPGASINFTNLGE 522
+ GG G IVLLVL+ +L + C KR +QR + VGP P G S P SINF+ +G+
Sbjct: 451 VGLFGGLGFIVLLVLVLVLLIRRCDKRIASQREIANVGPAPEGRSPLPAKVSINFSGVGD 510
Query: 523 SFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDF 582
FTY+Q+L T FS+ NLIK+GHSGDLFRGILE G PVV+KR+DL+++K E+Y++ELD
Sbjct: 511 LFTYEQILCYTDGFSEINLIKHGHSGDLFRGILESGAPVVVKRVDLRALKKESYMMELDV 570
Query: 583 FSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDD-LQSLDWITRLK 641
+KVSH RLVPLLGHC+E ++EK LVYKYMPNGDLS+SLYR TN EDD LQSLDWITRLK
Sbjct: 571 LNKVSHMRLVPLLGHCLEHDSEKLLVYKYMPNGDLSNSLYRVTNLEDDNLQSLDWITRLK 630
Query: 642 IAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITR 701
IAIGAAEGLSYLHHEC+ P VHRDVQASSILLDDKFEVRLGSLSEVCAQ GD+HQ+ IT+
Sbjct: 631 IAIGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVCAQEGDSHQNVITK 690
Query: 702 LLRLPQSSEQGSSGMV 717
LLR PQ+SEQGSSG++
Sbjct: 691 LLRKPQTSEQGSSGLL 706
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458279|ref|XP_002281409.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/676 (63%), Positives = 526/676 (77%), Gaps = 4/676 (0%)
Query: 45 LSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQ 104
L + TE +ALF+LRSSLGLR +DWPR+ +PC W GV CQNG VVGI++SG +RT G
Sbjct: 32 LRNDTERSALFDLRSSLGLRAKDWPRRSEPCWNWTGVACQNGRVVGISVSGLQRTHAGRV 91
Query: 105 NPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN 164
NP+FA D+L NL+ LA+FN+S F LPGSIPDWLGQ L LQ LDLRS S+ G IP SLG+
Sbjct: 92 NPQFAVDSLANLSLLATFNSSGFELPGSIPDWLGQSLSALQVLDLRSASVKGPIPQSLGS 151
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
L +L SLYLS N LTG IPS LGQLS LSVL+LS+NSLTG+IP +F L NL+SLD+SSN
Sbjct: 152 LGSLHSLYLSGNSLTGAIPSQLGQLSALSVLNLSQNSLTGSIPQTFSTLSNLTSLDLSSN 211
Query: 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
YL+GS+P GL L+KLQ+LN+S+N L +SIP QLG L LV+LDLS+N+L G+VP +L G
Sbjct: 212 YLSGSVPSGLANLTKLQFLNLSSNILTASIPNQLGQLFQLVELDLSLNNLMGTVPVDLGG 271
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344
LRSLQK ++GNN L G+LS LF +++LQ +VL N G P VLWSM +LR LD+S
Sbjct: 272 LRSLQKMLLGNNGLQGSLSDKLFSNLTRLQFLVLSDNKIEGDIPGVLWSMHELRFLDVSG 331
Query: 345 NNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSN 404
NNFTG L N NVN++ N+S N+FYG L LG+F L+DLSGNYF+G+VP + +N
Sbjct: 332 NNFTGVLANLSWNVNSTNTMFNLSNNLFYGALPTPLGKFSLIDLSGNYFQGKVPNDIETN 391
Query: 405 ASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETSGDSNRK-IIVL 463
+SL+ NCLQ+V +QR+L DC FYA R LSFDNFG P+ QPP P +S +S+++ I +L
Sbjct: 392 -TSLNRNCLQSVLDQRSLEDCRLFYAERNLSFDNFGAPSPAQPPLPGSSTNSSKRWIFIL 450
Query: 464 SAVLGGFGLIVLLVLLALLALCFCKKRTPNQRGVG-VGPVPAGSSLPPPGASINFTNLGE 522
+ GG G IVLLVL+ +L + C KR +QR + VGP P G S P SINF+ +G+
Sbjct: 451 VGLFGGLGFIVLLVLVLVLLIRRCDKRIASQREIANVGPAPEGRSPLPAKVSINFSGVGD 510
Query: 523 SFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDF 582
FTY+Q+L T FS+ NLIK+GHSGDLFRGILE G PVV+KR+DL+++K E+Y++ELD
Sbjct: 511 LFTYEQILCYTDGFSEINLIKHGHSGDLFRGILESGAPVVVKRVDLRALKKESYMMELDV 570
Query: 583 FSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDD-LQSLDWITRLK 641
+KVSH RLVPLLGHC+E ++EK LVYKYMPNGDLS+SLYR TN EDD LQSLDWITRLK
Sbjct: 571 LNKVSHMRLVPLLGHCLEHDSEKLLVYKYMPNGDLSNSLYRVTNLEDDNLQSLDWITRLK 630
Query: 642 IAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITR 701
IAIGAAEGLSYLHHEC+ P VHRDVQASSILLDDKFEVRLGSLSEVCAQ GD+HQ+ IT+
Sbjct: 631 IAIGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVCAQEGDSHQNVITK 690
Query: 702 LLRLPQSSEQGSSGMV 717
LLR PQ+SEQGSSG++
Sbjct: 691 LLRKPQTSEQGSSGLL 706
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 766 | ||||||
| TAIR|locus:2042599 | 915 | AT2G16250 [Arabidopsis thalian | 0.870 | 0.728 | 0.545 | 7.9e-188 | |
| TAIR|locus:2136313 | 864 | AT4G39270 [Arabidopsis thalian | 0.728 | 0.645 | 0.473 | 8.9e-125 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.447 | 0.273 | 0.317 | 2e-56 | |
| UNIPROTKB|Q8RZV7 | 1294 | P0413C03.22 "Putative extra sp | 0.441 | 0.261 | 0.307 | 2.1e-54 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.411 | 0.281 | 0.326 | 7.3e-52 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.724 | 0.444 | 0.282 | 1.6e-51 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.370 | 0.248 | 0.348 | 2.1e-51 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.349 | 0.243 | 0.310 | 6.1e-50 | |
| TAIR|locus:2161825 | 1090 | AT5G56040 [Arabidopsis thalian | 0.421 | 0.296 | 0.311 | 2.8e-48 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.379 | 0.258 | 0.286 | 4.8e-48 |
| TAIR|locus:2042599 AT2G16250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
Identities = 368/674 (54%), Positives = 457/674 (67%)
Query: 49 TELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRF 108
+E L LRSSLGLR DWP K DPC+ W G++C+NGS++GINISGFRRTR+G NP+F
Sbjct: 35 SEKLILLNLRSSLGLRGTDWPIKGDPCVDWRGIQCENGSIIGINISGFRRTRIGKLNPQF 94
Query: 109 AADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNL 168
+ D L NLT L+ FNAS LPG+IP+W G L L+ LDL SCS++GV+PF+LGNLT+L
Sbjct: 95 SVDPLRNLTRLSYFNASGLALPGTIPEWFGVSLLALEVLDLSSCSVNGVVPFTLGNLTSL 154
Query: 169 TSLYLSDNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTG 228
+L LS N LT +P TG +P SF LKNL +LD+SSNYLTG
Sbjct: 155 RTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTG 214
Query: 229 SIPPGLGTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSL 288
IPPGLG LSKL +LN S+NS +S IP++ GSVP ELR L L
Sbjct: 215 PIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKL 274
Query: 289 QKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
Q IG+N LSG L V+LF SQLQ +VLR+NGF+G PDV WS+P+LR+LDI++NNFT
Sbjct: 275 QLMAIGDNLLSGTLPVDLFSAESQLQTLVLRENGFSGSLPDVCWSLPKLRILDIAKNNFT 334
Query: 349 GPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL 408
G LP S + + ++IS N FYG LTP+L RFR++DLSGNYFEG++P+YV S+
Sbjct: 335 GLLPYSSYDSDQIAEMVDISSNTFYGELTPILRRFRIMDLSGNYFEGKLPDYVTGENVSV 394
Query: 409 DSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPE-TSGDSNRKIIVLSXXX 467
SNCL+N Q+ C++FY +RGL FD+FGRPN TQP +SG S R +I+L+
Sbjct: 395 TSNCLRNERRQKPSAICAAFYKSRGLDFDDFGRPNLTQPTSKNASSGISRRTVIILAAVG 454
Query: 468 XXXXXXXXXXXX-XXXXXCFCKKRTPNQRXXXXXXXXXXXXXXX---XXXXINFTNLGES 523
C +R QR + + LG +
Sbjct: 455 GGVAFILLFVILPIILVLCMRHRRRAAQRGNNDRPKPAGEASQQPPKGAQTFDLSRLGNA 514
Query: 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFF 583
F+Y+QLL AT +F+DANLIK GHSG+LFRG LE GIPVVIK+ID++ K+E Y+ EL+ F
Sbjct: 515 FSYEQLLQATEEFNDANLIKRGHSGNLFRGFLENGIPVVIKKIDVREGKSEGYISELELF 574
Query: 584 SKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDD-LQSLDWITRLKI 642
SK H RLVP LGHC+E E++KFLVYK+M +GDL+SSL+RK+ E D L+SLDWITRLKI
Sbjct: 575 SKAGHQRLVPFLGHCLENESQKFLVYKFMRHGDLASSLFRKSENEGDGLKSLDWITRLKI 634
Query: 643 AIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRL 702
A+GAAEGLSYLHHEC+ P VHRDVQASSILLDDKFEVRLGSLSE AQG DA+QSRI+RL
Sbjct: 635 ALGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEAYAQG-DAYQSRISRL 693
Query: 703 LRLPQSSEQGSSGM 716
LRLPQSSE SSG+
Sbjct: 694 LRLPQSSEPSSSGV 707
|
|
| TAIR|locus:2136313 AT4G39270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 272/575 (47%), Positives = 353/575 (61%)
Query: 154 ISGVIPFSLGN-LTNLTSLYLSDNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGL 212
+ G IP G+ L L L LS +TGTIP G+IP S
Sbjct: 113 LPGPIPALFGSSLLTLEVLDLSSCSITGTIPESLTRLSHLKVLDLSKNAINGDIPLSLTS 172
Query: 213 LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXX 272
L+NLS LD+SSN + GSIP +G LSKLQ LN+S N+L SSIP
Sbjct: 173 LQNLSILDLSSNSVFGSIPANIGALSKLQRLNLSRNTLTSSIPPSLGDLSVLIDLDLSFN 232
Query: 273 XXXGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLW 332
GSVPS+L+GLR+LQ VI N LSG+L +LF +S+LQII R +GF G P LW
Sbjct: 233 GMSGSVPSDLKGLRNLQTLVIAGNRLSGSLPPDLFSLLSKLQIIDFRGSGFIGALPSRLW 292
Query: 333 SMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNY 392
S+P+L+ LDIS N+F+ LPN+ + +++ LNIS NMFYG LT +L RF++VDLS NY
Sbjct: 293 SLPELKFLDISGNHFSDMLPNTTVSFDSTVSMLNISGNMFYGNLTLLLTRFQVVDLSENY 352
Query: 393 FEGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPET 452
FEG++P++V + AS L +NCLQ QR L DC+ FY+ +GL+F+NFG+ + +T
Sbjct: 353 FEGKIPDFVPTRAS-LSNNCLQGPEKQRKLSDCTLFYSKKGLTFNNFGQHE--EKKSSKT 409
Query: 453 SGDSNRKIIVLSXXXXXXXXXXXXXXXXXXXXCFCKKR-----TPNQRXXXXXXXX---- 503
S S+ KI++L+ FC +R T N
Sbjct: 410 SWLSHTKIVILAAVGGSILLMLILIVLPITVS-FCVRRRNRSSTSNHPRGRHNGVGPLPP 468
Query: 504 XXXXXXXXXXXINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVI 563
INF +LG SFTYQQLL AT +FSD+NLIK G SGDLF+G+LE G+ +V+
Sbjct: 469 DETLPSRGGVSINFGSLGSSFTYQQLLNATKEFSDSNLIKKGQSGDLFKGVLENGVQIVV 528
Query: 564 KRIDLQSVKT-EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLY 622
KRI L+S K EAYL ELDFFS+ +H R++P +G +E KFLVYKYM N DL SSL+
Sbjct: 529 KRISLESTKNNEAYLTELDFFSRFAHPRIIPFVGKSLESATHKFLVYKYMLNRDLPSSLF 588
Query: 623 RKTNT--EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680
K+N+ ++ L+SLDWITRLKIA+G AEGL+YLHH+C+ VHRD+QASSILLDDKFEVR
Sbjct: 589 YKSNSLVDNGLRSLDWITRLKIALGVAEGLAYLHHDCSPSVVHRDIQASSILLDDKFEVR 648
Query: 681 LGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSG 715
LGS S+ C Q + +I RLLRL QSS++ G
Sbjct: 649 LGSFSKACHQENNGRPRKIARLLRLSQSSQESVPG 683
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| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 2.0e-56, Sum P(2) = 2.0e-56
Identities = 115/362 (31%), Positives = 165/362 (45%)
Query: 48 RTELAALFELRSSLGLRR------RDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRL 101
R +L L EL++S RDW W GV C ++G+N+SG T
Sbjct: 27 RDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCGGREIIGLNLSGLGLT-- 84
Query: 102 GSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFS 161
GS +P NL H+ +++R L G IP L +L++L L S +SG IP
Sbjct: 85 GSISPSIGR--FNNLIHI-DLSSNR--LVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQ 139
Query: 162 LGNLTNLTSLYLSDNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDI 221
LG+L NL SL L DN L GTIP TG IP+ FG L L +L +
Sbjct: 140 LGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLIL 199
Query: 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSE 281
N L G IP +G + L + N L S+PA+ G +PS+
Sbjct: 200 QDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQ 259
Query: 282 LRGLRSLQKF-VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLL 340
L L S+Q +IGN L G + L ++ LQ + L N TG + W M QL L
Sbjct: 260 LGDLVSIQYLNLIGNQ-LQGLIPKRL-TELANLQTLDLSSNNLTGVIHEEFWRMNQLEFL 317
Query: 341 DISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGR---FRLVDLSGNYFEGRV 397
+++N +G LP + + NTS +L +S+ G + + +L+DLS N G++
Sbjct: 318 VLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQI 377
Query: 398 PE 399
P+
Sbjct: 378 PD 379
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| UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 2.1e-54, Sum P(2) = 2.1e-54
Identities = 110/358 (30%), Positives = 167/358 (46%)
Query: 50 ELAALFELRSSL----GLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQN 105
+++ LF LR S+ G R + + PC W+G+ C +VV I++S L +
Sbjct: 26 DISTLFTLRDSITEGKGFLRNWFDSETPPCS-WSGITCIGHNVVAIDLSS---VPLYAPF 81
Query: 106 PRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165
P A +L L +F+ F G +P+ LG L LQ LDL + ++G IP SL NL
Sbjct: 82 P-LCIGAFQSLVRL-NFSGCGF--SGELPEALGN-LQNLQYLDLSNNELTGPIPISLYNL 136
Query: 166 TNLTSLYLSDNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNY 225
L + L N L+G + +G++P G LKNL LDI N
Sbjct: 137 KMLKEMVLDYNSLSGQLSPAIAQLQHLTKLSISMNSISGSLPPDLGSLKNLELLDIKMNT 196
Query: 226 LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGL 285
GSIP G LS L + + S N+L SI G++P E+ L
Sbjct: 197 FNGSIPATFGNLSCLLHFDASQNNLTGSIFPGITSLTNLLTLDLSSNSFEGTIPREIGQL 256
Query: 286 RSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRN 345
+L+ ++G N L+G + + ++ QL+++ L + FTG P + + L LDIS N
Sbjct: 257 ENLELLILGKNDLTGRIPQEI-GSLKQLKLLHLEECQFTGKIPWSISGLSSLTELDISDN 315
Query: 346 NFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV-LG---RFRLVDLSGNYFEGRVPE 399
NF LP+S + T +L I++N G P LG + +++LS N G +PE
Sbjct: 316 NFDAELPSSMGELGNLT-QL-IAKNAGLSGNMPKELGNCKKLTVINLSFNALIGPIPE 371
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| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 107/328 (32%), Positives = 156/328 (47%)
Query: 75 CLVWNGVRCQN-GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSI 133
C W GV C + GS+ +N+ T G + F ++L++LA + S LL G+I
Sbjct: 65 CTSWYGVSCNSRGSIEELNL-----TNTGIEGT-FQDFPFISLSNLAYVDLSMNLLSGTI 118
Query: 134 PDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPXXXXXXXXXX 193
P G L L DL + ++G I SLGNL NLT LYL N LT IP
Sbjct: 119 PPQFGN-LSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMT 177
Query: 194 XXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS 253
TG+IP+S G LKNL L + NYLTG IPP LG + + L +S N L S
Sbjct: 178 DLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGS 237
Query: 254 IPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313
IP+ G +P E+ + S+ + N L+G++ +L + L
Sbjct: 238 IPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSL-GNLKNL 296
Query: 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFY 373
++ L QN TG P L ++ + L++S N TG +P+S N+ T+ L + +N
Sbjct: 297 TLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTI-LYLYENYLT 355
Query: 374 GGLTPVLGRFR-LVDL--SGNYFEGRVP 398
G + P LG ++DL + N G +P
Sbjct: 356 GVIPPELGNMESMIDLQLNNNKLTGSIP 383
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| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.6e-51, P = 1.6e-51
Identities = 170/601 (28%), Positives = 268/601 (44%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
D+L++L +L N S L G+I G + + D+ + IP LGN NL
Sbjct: 546 DSLISLRNLTRINLSHNRLNGTIHPLCGSS--SYLSFDVTNNGFEDEIPLELGNSQNLDR 603
Query: 171 LYLSDNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L L N LTG IP TG IP L K L+ +D+++N+L+G I
Sbjct: 604 LRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPI 663
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSLQK 290
PP LG LS+L L +S+N S+P + GS+P E+ L +L
Sbjct: 664 PPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNV 723
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR-LLDISRNNFTG 349
+ N SG+L +S+L + L +N TG P + + L+ LD+S NNFTG
Sbjct: 724 LNLDKNQFSGSLP-QAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTG 782
Query: 350 PLPNSRSNVNT-STVE-LNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASS 407
+P S + T S +E L++S N G + +G + + Y++ + ++
Sbjct: 783 DIP---STIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLG------------YLNVSFNN 827
Query: 408 LDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPETSGDSNRKIIVLSXXX 467
L + Q + SF GL R N + + G S R ++++S
Sbjct: 828 LGGK----LKKQFSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQ-QGLSARSVVIISAIS 882
Query: 468 XXXXXXXXXXXXXXXXXCFCKKRTPNQRXXXXXXXXXXXXXXXXXXXIN--FTNLGES-- 523
F K+R + F N G S
Sbjct: 883 ALTAIGLMILVIAL----FFKQRHDFFKKVGHGSTAYTSSSSSSQATHKPLFRN-GASKS 937
Query: 524 -FTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRI----DLQSVKTEAYLL 578
++ ++ AT + S+ +I +G SG +++ LE G V +K+I DL S K+ +
Sbjct: 938 DIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSNKS--FSR 995
Query: 579 ELDFFSKVSHARLVPLLGHCMER-ENEKFLVYKYMPNGDLSSSLYR-KTNTEDDLQSLDW 636
E+ ++ H LV L+G+C + E L+Y+YM NG + L+ K E + LDW
Sbjct: 996 EVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDW 1055
Query: 637 ITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDA 694
RL+IA+G A+G+ YLHH+C P VHRD+++S++LLD E LG L++V + D
Sbjct: 1056 EARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDT 1115
Query: 695 H 695
+
Sbjct: 1116 N 1116
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| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 2.1e-51, Sum P(2) = 2.1e-51
Identities = 101/290 (34%), Positives = 143/290 (49%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
L LT L F A L GSIP L LQALDL S++G IP L L NLT L
Sbjct: 390 LGTLTKLTLFFAWSNQLEGSIPPGLAD-CTDLQALDLSRNSLTGTIPSGLFMLRNLTKLL 448
Query: 173 LSDNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
L N L+G IP TG IP+ G LK ++ LD SSN L G +P
Sbjct: 449 LISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPD 508
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSLQKFV 292
+G+ S+LQ +++SNNSL S+P G +P+ L L SL K +
Sbjct: 509 EIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLI 568
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL-LDISRNNFTGPL 351
+ N SG++ +L S LQ++ L N +G P L + L + L++S N TG +
Sbjct: 569 LSKNLFSGSIPTSL-GMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKI 627
Query: 352 PNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNY--FEGRVPE 399
P+ +++N ++ L++S NM G L P+ LV L+ +Y F G +P+
Sbjct: 628 PSKIASLNKLSI-LDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPD 676
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| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 6.1e-50, Sum P(2) = 6.1e-50
Identities = 85/274 (31%), Positives = 124/274 (45%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPXXXXX 188
L G IP +G + + +D ++G IP G++ NL L+L +N L G IP
Sbjct: 295 LTGEIPREIGNLIDAAE-IDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGE 353
Query: 189 XXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248
G IP L L L + N L G IPP +G S L++S N
Sbjct: 354 LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSAN 413
Query: 249 SLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308
SL+ IPA G++P +L+ +SL K ++G+N L+G+L + LF
Sbjct: 414 SLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELF- 472
Query: 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNIS 368
+ L + L QN +G L + L L ++ NNFTG +P N+ T V NIS
Sbjct: 473 NLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNL-TKIVGFNIS 531
Query: 369 QNMFYGGLTPVLGR---FRLVDLSGNYFEGRVPE 399
N G + LG + +DLSGN F G + +
Sbjct: 532 SNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQ 565
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| TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 2.8e-48, Sum P(2) = 2.8e-48
Identities = 105/337 (31%), Positives = 159/337 (47%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS 174
NL +L S L G+IP+ L L L++ + ISG IP +G LT+LT +
Sbjct: 335 NLPNLQELQLSVNQLSGTIPEELAN-CTKLTHLEIDNNQISGEIPPLIGKLTSLTMFFAW 393
Query: 175 DNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL 234
N LTG IP +G+IP ++NL+ L + SNYL+G IPP +
Sbjct: 394 QNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLSNYLSGFIPPDI 453
Query: 235 GTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSLQKFVIG 294
G + L L ++ N LA +IPA+ G++P E+ G SL+ +
Sbjct: 454 GNCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRLIGNIPPEISGCTSLEFVDLH 513
Query: 295 NNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354
+N L+G L L P LQ I L N TG P + S+ +L L++++N F+G +P
Sbjct: 514 SNGLTGGLPGTL-P--KSLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRFSGEIPRE 570
Query: 355 RSNVNTSTVELNISQNMFYGGLTPVLGRFRLV----DLSGNYFEGRVPEYVHS--NASSL 408
S+ + + LN+ N F G + LGR + +LS N+F G +P S N +L
Sbjct: 571 ISSCRSLQL-LNLGDNGFTGEIPNELGRIPSLAISLNLSCNHFTGEIPSRFSSLTNLGTL 629
Query: 409 DSNCLQNVPNQRTLVDCSSFYAARGLSFDNF-GR-PN 443
D + + N L D + + +SF+ F G PN
Sbjct: 630 DVSHNKLAGNLNVLADLQNLVSLN-ISFNEFSGELPN 665
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| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 4.8e-48, Sum P(2) = 4.8e-48
Identities = 85/297 (28%), Positives = 135/297 (45%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS 174
NLT + L G IP LG P L +D +SG IP + +NL L L
Sbjct: 395 NLTSMRQLQLFHNSLSGVIPQGLGLYSP-LWVVDFSENQLSGKIPPFICQQSNLILLNLG 453
Query: 175 DNGLTGTIPXXXXXXXXXXXXXXXXXXXTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL 234
N + G IP TG PT L NLS++++ N +G +PP +
Sbjct: 454 SNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEI 513
Query: 235 GTLSKLQYLNVSNNSLASSIPAQXXXXXXXXXXXXXXXXXXGSVPSELRGLRSLQKFVIG 294
GT KLQ L+++ N +S++P + G +PSE+ + LQ+ +
Sbjct: 514 GTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLS 573
Query: 295 NNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354
N G+L L ++ QL+I+ L +N F+G P + ++ L L + N F+G +P
Sbjct: 574 RNSFIGSLPPEL-GSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQ 632
Query: 355 RSNVNTSTVELNISQNMFYGGLTPVLGRFRLV---DLSGNYFEGRVPEYVHSNASSL 408
+++ + +N+S N F G + P +G L+ L+ N+ G +P N SSL
Sbjct: 633 LGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPT-TFENLSSL 688
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C0LGK4 | Y2165_ARATH | 2, ., 7, ., 1, 1, ., 1 | 0.6177 | 0.8720 | 0.7300 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_IX000253 | hypothetical protein (893 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 766 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-43 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-43 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-26 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 3e-18 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 1e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-17 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 2e-17 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 2e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-17 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 5e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-16 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-14 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-13 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 2e-12 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 4e-12 | |
| cd05046 | 275 | cd05046, PTK_CCK4, Pseudokinase domain of the Prot | 2e-10 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 4e-10 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 4e-10 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 4e-10 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 6e-10 | |
| cd05052 | 263 | cd05052, PTKc_Abl, Catalytic domain of the Protein | 1e-09 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 3e-09 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 3e-09 | |
| cd05085 | 250 | cd05085, PTKc_Fer, Catalytic domain of the Protein | 4e-09 | |
| cd05044 | 269 | cd05044, PTKc_c-ros, Catalytic domain of the Prote | 4e-09 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-08 | |
| cd05058 | 262 | cd05058, PTKc_Met_Ron, Catalytic domain of the Pro | 2e-08 | |
| cd05112 | 256 | cd05112, PTKc_Itk, Catalytic domain of the Protein | 4e-08 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 6e-08 | |
| cd05043 | 280 | cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece | 7e-08 | |
| cd05069 | 260 | cd05069, PTKc_Yes, Catalytic domain of the Protein | 1e-07 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 1e-07 | |
| cd05067 | 260 | cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro | 1e-07 | |
| cd05071 | 262 | cd05071, PTKc_Src, Catalytic domain of the Protein | 1e-07 | |
| cd05036 | 277 | cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro | 1e-07 | |
| cd07840 | 287 | cd07840, STKc_CDK9_like, Catalytic domain of Cycli | 2e-07 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 2e-07 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 3e-07 | |
| cd05097 | 295 | cd05097, PTKc_DDR_like, Catalytic domain of Discoi | 3e-07 | |
| cd05032 | 277 | cd05032, PTKc_InsR_like, Catalytic domain of Insul | 5e-07 | |
| cd05070 | 260 | cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro | 5e-07 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 5e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 6e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-06 | |
| cd05056 | 270 | cd05056, PTKc_FAK, Catalytic domain of the Protein | 1e-06 | |
| cd05035 | 273 | cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li | 1e-06 | |
| cd05042 | 269 | cd05042, PTKc_Aatyk, Catalytic domain of the Prote | 1e-06 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-06 | |
| cd06610 | 267 | cd06610, STKc_OSR1_SPAK, Catalytic domain of the P | 2e-06 | |
| cd06605 | 265 | cd06605, PKc_MAPKK, Catalytic domain of the dual-s | 2e-06 | |
| cd06607 | 307 | cd06607, STKc_TAO, Catalytic domain of the Protein | 2e-06 | |
| cd05113 | 256 | cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro | 4e-06 | |
| cd05051 | 296 | cd05051, PTKc_DDR, Catalytic domain of the Protein | 4e-06 | |
| cd05083 | 254 | cd05083, PTKc_Chk, Catalytic domain of the Protein | 5e-06 | |
| cd06631 | 265 | cd06631, STKc_YSK4, Catalytic domain of the Protei | 7e-06 | |
| cd05057 | 279 | cd05057, PTKc_EGFR_like, Catalytic domain of Epide | 9e-06 | |
| cd05072 | 261 | cd05072, PTKc_Lyn, Catalytic domain of the Protein | 9e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 9e-06 | |
| cd06614 | 286 | cd06614, STKc_PAK, Catalytic domain of the Protein | 1e-05 | |
| cd05114 | 256 | cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro | 2e-05 | |
| cd06637 | 272 | cd06637, STKc_TNIK, Catalytic domain of the Protei | 3e-05 | |
| cd06621 | 287 | cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of | 4e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 5e-05 | |
| cd06634 | 308 | cd06634, STKc_TAO2, Catalytic domain of the Protei | 5e-05 | |
| cd05627 | 360 | cd05627, STKc_NDR2, Catalytic domain of the Protei | 5e-05 | |
| cd08215 | 258 | cd08215, STKc_Nek, Catalytic domain of the Protein | 5e-05 | |
| cd05063 | 268 | cd05063, PTKc_EphR_A2, Catalytic domain of the Pro | 6e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 7e-05 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 7e-05 | |
| cd05601 | 330 | cd05601, STKc_CRIK, Catalytic domain of the Protei | 7e-05 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 7e-05 | |
| cd06609 | 274 | cd06609, STKc_MST3_like, Catalytic domain of Mamma | 7e-05 | |
| cd06636 | 282 | cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr | 8e-05 | |
| cd06651 | 266 | cd06651, STKc_MEKK3, Catalytic domain of the Prote | 1e-04 | |
| cd05075 | 272 | cd05075, PTKc_Axl, Catalytic domain of the Protein | 1e-04 | |
| cd06632 | 258 | cd06632, STKc_MEKK1_plant, Catalytic domain of the | 1e-04 | |
| cd05096 | 304 | cd05096, PTKc_DDR1, Catalytic domain of the Protei | 1e-04 | |
| cd05581 | 280 | cd05581, STKc_PDK1, Catalytic domain of the Protei | 2e-04 | |
| cd05628 | 363 | cd05628, STKc_NDR1, Catalytic domain of the Protei | 3e-04 | |
| cd06633 | 313 | cd06633, STKc_TAO3, Catalytic domain of the Protei | 4e-04 | |
| cd05084 | 252 | cd05084, PTKc_Fes, Catalytic domain of the Protein | 4e-04 | |
| cd05033 | 266 | cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec | 4e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 5e-04 | |
| cd06625 | 263 | cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ | 5e-04 | |
| cd06608 | 275 | cd06608, STKc_myosinIII_like, Catalytic domain of | 5e-04 | |
| cd06626 | 264 | cd06626, STKc_MEKK4, Catalytic domain of the Prote | 5e-04 | |
| cd08529 | 256 | cd08529, STKc_FA2-like, Catalytic domain of the Pr | 6e-04 | |
| cd05080 | 283 | cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma | 7e-04 | |
| cd05090 | 283 | cd05090, PTKc_Ror1, Catalytic domain of the Protei | 7e-04 | |
| cd06635 | 317 | cd06635, STKc_TAO1, Catalytic domain of the Protei | 7e-04 | |
| cd05095 | 296 | cd05095, PTKc_DDR2, Catalytic domain of the Protei | 8e-04 | |
| cd08216 | 314 | cd08216, PK_STRAD, Pseudokinase domain of STE20-re | 8e-04 | |
| cd05123 | 250 | cd05123, STKc_AGC, Catalytic domain of AGC family | 8e-04 | |
| cd05091 | 283 | cd05091, PTKc_Ror2, Catalytic domain of the Protei | 8e-04 | |
| cd05573 | 350 | cd05573, STKc_ROCK_NDR_like, Catalytic domain of R | 9e-04 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 0.001 | |
| cd06644 | 292 | cd06644, STKc_STK10_LOK, Catalytic domain of the P | 0.001 | |
| cd05073 | 260 | cd05073, PTKc_Hck, Catalytic domain of the Protein | 0.001 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.002 | |
| cd06653 | 264 | cd06653, STKc_MEKK3_like_1, Catalytic domain of MA | 0.002 | |
| cd05088 | 303 | cd05088, PTKc_Tie2, Catalytic domain of the Protei | 0.002 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 0.002 | |
| cd05631 | 285 | cd05631, STKc_GRK4, Catalytic domain of the Protei | 0.002 | |
| cd05598 | 376 | cd05598, STKc_LATS, Catalytic domain of the Protei | 0.002 | |
| cd05579 | 265 | cd05579, STKc_MAST_like, Catalytic domain of Micro | 0.002 | |
| cd05079 | 284 | cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma | 0.002 | |
| cd06640 | 277 | cd06640, STKc_MST4, Catalytic domain of the Protei | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| cd05092 | 280 | cd05092, PTKc_TrkA, Catalytic domain of the Protei | 0.003 | |
| cd05089 | 297 | cd05089, PTKc_Tie1, Catalytic domain of the Protei | 0.003 | |
| cd05062 | 277 | cd05062, PTKc_IGF-1R, Catalytic domain of the Prot | 0.003 | |
| cd06646 | 267 | cd06646, STKc_MAP4K5, Catalytic domain of the Prot | 0.003 | |
| cd05599 | 364 | cd05599, STKc_NDR_like, Catalytic domain of Nuclea | 0.003 | |
| cd05632 | 285 | cd05632, STKc_GRK5, Catalytic domain of the Protei | 0.004 | |
| cd06652 | 265 | cd06652, STKc_MEKK2, Catalytic domain of the Prote | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 2e-43
Identities = 176/617 (28%), Positives = 270/617 (43%), Gaps = 94/617 (15%)
Query: 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSL 171
+L NL +L + L G IP + L L +LDL S+SG IP + L NL L
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313
Query: 172 YLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
+L N TG IP +L L L VL L N +G IP + G NL+ LD+S+N LTG IP
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373
Query: 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
GL + L L + +NSL IP LG SL + L NS SG +PSE L +
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351
I NN L G ++ + + LQ++ L +N F G PD S +L LD+SRN F+G +
Sbjct: 434 DISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491
Query: 352 PNSRSNVN-----------------------TSTVELNISQNMFYGGLT------PVLGR 382
P +++ V L++S N G + PVL
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS- 550
Query: 383 FRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQR---TLVDCSSFYA--ARGLSFD 437
+DLS N G +P N +++S N+ + +L +F A A ++ +
Sbjct: 551 --QLDLSQNQLSGEIP----KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604
Query: 438 NF--GRPNATQPPPPETSGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCK------- 488
G + PP + + ++ LG F L++ L F +
Sbjct: 605 IDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAF----LVLALVAFGFVFIRGRNNLEL 660
Query: 489 KRTPNQRGVGVGPVPAGSSLPPPGASINFTN--LGESFTYQQLLAATGDFSDANLIKNGH 546
KR N+ G + F + + +S T +L++ + N+I G
Sbjct: 661 KRVENEDGTW---------------ELQFFDSKVSKSITINDILSSL---KEENVISRGK 702
Query: 547 SGDLFRG-ILEGGIPVVIKRI-DLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G ++G ++ G+ V+K I D+ S+ E+ K+ H +V L+G C E
Sbjct: 703 KGASYKGKSIKNGMQFVVKEINDVNSIP----SSEIADMGKLQHPNIVKLIGLC-RSEKG 757
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+L+++Y+ +LS L++L W R KIAIG A+ L +LH C+ V
Sbjct: 758 AYLIHEYIEGKNLSEV----------LRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVG 807
Query: 665 DVQASSILLDDKFEVRL 681
++ I++D K E L
Sbjct: 808 NLSPEKIIIDGKDEPHL 824
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 5e-43
Identities = 136/420 (32%), Positives = 214/420 (50%), Gaps = 32/420 (7%)
Query: 25 MFFVMFLLLFEPTFEQQLERLSSRTELAALFELRSSLGLRRR---DWPRKVDPCLVWNGV 81
M LF + EL L +SS+ + +W D CL W G+
Sbjct: 11 YLIFMLFFLFLNF------SMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCL-WQGI 63
Query: 82 RCQNGS-VVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQ 140
C N S VV I++SG + G + A+ L ++ + N S L G IPD +
Sbjct: 64 TCNNSSRVVSIDLSG--KNISGKISS-----AIFRLPYIQTINLSNNQLSGPIPDDIFTT 116
Query: 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200
+L+ L+L + + +G IP G++ NL +L LS+N L+G IP+ +G S L VLDL N
Sbjct: 117 SSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174
Query: 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGD 260
L G IP S L +L L ++SN L G IP LG + L+++ + N+L+ IP ++G
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234
Query: 261 LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ 320
L SL LDL N+L+G +PS L L++LQ + N LSG + ++F ++ +L + L
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSD 293
Query: 321 NGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL 380
N +G P+++ + L +L + NNFTG +P + +++ V L + N F G + L
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV-LQLWSNKFSGEIPKNL 352
Query: 381 GR---FRLVDLSGNYFEGRVPEYVHSNAS----SLDSNCLQN-VPNQRTLVDCSSFYAAR 432
G+ ++DLS N G +PE + S+ + L SN L+ +P ++L C S R
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP--KSLGACRSLRRVR 410
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 5e-26
Identities = 85/243 (34%), Positives = 115/243 (47%), Gaps = 24/243 (9%)
Query: 69 PRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFL 128
P+ + C VR Q+ S G S F T+L LV +++ N
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEF--TKL----------PLVYFLDISNNN----- 439
Query: 129 LPGSIPD--WLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL 186
L G I W +P+LQ L L G +P S G+ L +L LS N +G +P L
Sbjct: 440 LQGRINSRKW---DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495
Query: 187 GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246
G LS L L LS N L+G IP K L SLD+S N L+G IP + L L++S
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555
Query: 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFL-SGNLSVN 305
N L+ IP LG+++SLV +++S N L GS+PS L V GN L G+ +
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG 615
Query: 306 LFP 308
L P
Sbjct: 616 LPP 618
|
Length = 968 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 540 NLIKNGHSGDLFRGILEGG----IPVVIKRI--DLQSVKTEAYLLELDFFSKVSHARLVP 593
+ G G++++G L+G V +K + D + + +L E K+ H +V
Sbjct: 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSL--YRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
LLG C E E +LV +YM GDL L R + +L L AI A+G+
Sbjct: 61 LLGVCTEEEPL-YLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGME 119
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YL FVHRD+ A + L+ + V++
Sbjct: 120 YLAS---KKFVHRDLAARNCLVGEDLVVKIS 147
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 544 NGHSGDLFRGILEGG-----IPVVIKRI--DLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
G G++++G L+G + V +K + D + E +L E K+ H +V LLG
Sbjct: 9 EGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLG 68
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
C E E +V +YMP GDL Y + N +L L A+ A G+ YL
Sbjct: 69 VCTEEEPL-MIVMEYMPGGDLLD--YLRKNRPKELS---LSDLLSFALQIARGMEYLES- 121
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
F+HRD+ A + L+ + V++
Sbjct: 122 --KNFIHRDLAARNCLVGENLVVKIS 145
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-17
Identities = 62/174 (35%), Positives = 87/174 (50%), Gaps = 33/174 (18%)
Query: 43 ERLSSRTELAALFELRSSLGLRRR-DWPRKVDPCLV----WNGVRCQNGSVVGINISGFR 97
E + E++AL L+SSLGL R W DPC+ W+G CQ S G
Sbjct: 366 ESKTLLEEVSALQTLKSSLGLPLRFGW--NGDPCVPQQHPWSGADCQFDSTKG------- 416
Query: 98 RTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGV 157
++ D L L + R +P I +L LQ+++L SI G
Sbjct: 417 ---------KWFIDGL-GLDN----QGLRGFIPNDIS-----KLRHLQSINLSGNSIRGN 457
Query: 158 IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211
IP SLG++T+L L LS N G+IP SLGQL+ L +L+L+ NSL+G +P + G
Sbjct: 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 545 GHSGDLFRGIL-----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
G G++++G L V +K + + E +L E K+SH +V LLG
Sbjct: 10 GAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGV 69
Query: 598 CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
C + E ++V +YMP GDL L + + L L++A+ A+G+ YL
Sbjct: 70 CTQGE-PLYIVTEYMPGGDLLDFLRKHG------EKLTLKDLLQMALQIAKGMEYLE--- 119
Query: 658 TLPFVHRDVQASSILLDDKFEVRLG 682
+ FVHRD+ A + L+ + V++
Sbjct: 120 SKNFVHRDLAARNCLVTENLVVKIS 144
|
Length = 258 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 544 NGHSGDLFRGILEG-----GIPVVIKRI--DLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
G G++++G L+G + V +K + D + E +L E K+ H +V LLG
Sbjct: 9 EGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLG 68
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
C E E ++V +YM GDL S Y + N L L A+ A G+ YL
Sbjct: 69 VCTEEEPL-YIVMEYMEGGDLLS--YLRKNRP----KLSLSDLLSFALQIARGMEYLES- 120
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
F+HRD+ A + L+ + V++
Sbjct: 121 --KNFIHRDLAARNCLVGENLVVKIS 144
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-17
Identities = 41/89 (46%), Positives = 57/89 (64%)
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L L + GL G IP+ + +L L ++LS NS+ GNIP S G + +L LD+S N GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
P LG L+ L+ LN++ NSL+ +PA LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-17
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 542 IKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT--EAYLLELDFFSKVSHARLVPLLGHC 598
+ G G ++ + G V IK I + + E L E++ K++H +V L G
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
+ EN +LV +Y G L L L L+I + EGL YLH
Sbjct: 61 ED-ENHLYLVMEYCEGGSLKDLLKENEGK------LSEDEILRILLQILEGLEYLHSN-- 111
Query: 659 LPFVHRDVQASSILLDDK 676
+HRD++ +ILLD
Sbjct: 112 -GIIHRDLKPENILLDSD 128
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-16
Identities = 41/95 (43%), Positives = 58/95 (61%)
Query: 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL 250
+ L L L G IP L++L S+++S N + G+IPP LG+++ L+ L++S NS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGL 285
SIP LG L SL L+L+ NSLSG VP+ L G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 3e-14
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 9/190 (4%)
Query: 158 IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLS 217
+L NL L SL L+ N L I S L +L+ L+ LDL N++T P L NL
Sbjct: 85 GSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143
Query: 218 SLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS 277
LD+S N + S+P L L L+ L++S N L S +P L +L +L +LDLS N +S
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-D 200
Query: 278 VPSELRGLRSLQKFVIGNNFLSGNLS-VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQ 336
+P E+ L +L++ + NN + LS ++ +S L++ + P+ + ++
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL----PESIGNLSN 256
Query: 337 LRLLDISRNN 346
L LD+S N
Sbjct: 257 LETLDLSNNQ 266
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-14
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 216 LSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275
+ L + + L G IP + L LQ +N+S NS+ +IP LG + SL LDLS NS +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 276 GSVPSELRGLRSLQKFVIGNNFLSGNL 302
GS+P L L SL+ + N LSG +
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 11/261 (4%)
Query: 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSL 171
L+NL L S + + L +I + L +L L +LDL + +I+ + P +NL L
Sbjct: 88 NLLNLLPLPSLDLNLNRLRSNISELL--ELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145
Query: 172 YLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
LSDN + ++PS L L L LDLS N L+ ++P L NL++LD+S N +P
Sbjct: 146 DLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGN-KISDLP 202
Query: 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
P + LS L+ L++SNNS+ + + L +L +L L+LS N L +P + L +L+
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD-VLWSMPQLRLLDISRNNFTGP 350
+ NN +S S++ +++ L+ + L N + P L + LL++
Sbjct: 261 DLSNNQIS---SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317
Query: 351 LPNSRSNVNTSTVELNISQNM 371
L + +N + + + +
Sbjct: 318 LKLNSILLNNNILSNGETSSP 338
|
Length = 394 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 545 GHSGDLFRGILEG-GIPVVIKRIDLQ---SVKTEAYLLELDFFSKVSHARLVPLLGHCME 600
G G +++ +G G V +K + + S K + E+ ++SH +V L+ E
Sbjct: 10 GSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLID-AFE 68
Query: 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP 660
++ +LV +Y GDL L R L KIA+ GL YLH
Sbjct: 69 DKDHLYLVMEYCEGGDLFDYLSRGGP-------LSEDEAKKIALQILRGLEYLHSN---G 118
Query: 661 FVHRDVQASSILLDDKFEVRLG 682
+HRD++ +ILLD+ V++
Sbjct: 119 IIHRDLKPENILLDENGVVKIA 140
|
Length = 260 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS-VKTEAYLLELDFFSKVSHARLV 592
F I G G++++ G V IK I L+S K E + E+ K H +V
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIV 60
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
G +++E ++V ++ G L L + TN I + +GL Y
Sbjct: 61 KYYG-SYLKKDELWIVMEFCSGGSLKD-LLKSTNQTLTES---QIA--YVCKELLKGLEY 113
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRL 702
LH + +HRD++A++ILL EV+L + AQ D ++R T +
Sbjct: 114 LH---SNGIIHRDIKAANILLTSDGEVKLIDFG-LSAQLSDT-KARNTMV 158
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 25/168 (14%)
Query: 536 FSDANL-----IKNGHSGDLF----RGILEGG--IPVVIKRIDLQSVKTEAYLL----EL 580
F +NL + G G++F +GI E G V++K LQ K E EL
Sbjct: 2 FPRSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKA--LQKTKDENLQSEFRREL 59
Query: 581 DFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDL---QSLDWI 637
D F K+SH +V LLG C E E +++ +Y GDL L R T ++D+ L
Sbjct: 60 DMFRKLSHKNVVRLLGLCREAE-PHYMILEYTDLGDLKQFL-RATKSKDEKLKPPPLSTK 117
Query: 638 TRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685
++ + A G+ +L FVHRD+ A + L+ + EV++ LS
Sbjct: 118 QKVALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLLS 162
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 540 NLIKNGHSGDLFRGILE--GGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHARLVPL 594
L+ G G ++ + + G + + +K ++L EA E+ S + H +V
Sbjct: 6 ELLGRGSFGSVYLALDKDTGEL-MAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRY 64
Query: 595 LGHCMERENEKFLVY-KYMPNGDLSSSLYRKTN-TEDDLQSLDWITR--LKIAIGAAEGL 650
G + E ++ +Y+ G LSS L + E ++ TR L EGL
Sbjct: 65 YGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKY---TRQIL-------EGL 114
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
+YLH VHRD++ ++IL+D V+L
Sbjct: 115 AYLHSNG---IVHRDIKGANILVDSDGVVKLA 143
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 541 LIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCME 600
I G GD+ G G V +K + S +A+L E + + H LV LLG ++
Sbjct: 13 TIGKGEFGDVMLGDYRGQ-KVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQ 71
Query: 601 RENEKFLVYKYMPNGDLSSSLY---RKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
N ++V +YM G L L R T L A+ EG+ YL +
Sbjct: 72 -GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQ--------LGFALDVCEGMEYLEEK- 121
Query: 658 TLPFVHRDVQASSILLDD 675
FVHRD+ A ++L+ +
Sbjct: 122 --NFVHRDLAARNVLVSE 137
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 544 NGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603
G G+++ G G V +K + ++ EA+L E K+ H +LV L C E E
Sbjct: 16 AGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE- 74
Query: 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663
++V +YM G L L + + L + +A AEG++YL ++H
Sbjct: 75 PIYIVTEYMSKGSLLDFL-----KSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIH 126
Query: 664 RDVQASSILLDDK 676
RD+ A +IL+ +
Sbjct: 127 RDLAARNILVGEN 139
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 6e-10
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 541 LIKNGHSGDLFRGILEGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
I G+ GD+++G+L+G V +K R L +L E + + H +V L+G C
Sbjct: 2 KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
++++ ++V + +P G L + L +K N L L++++ AA G+ YL +
Sbjct: 62 VQKQ-PIYIVMELVPGGSLLTFLRKKKN------RLTVKKLLQMSLDAAAGMEYLESKNC 114
Query: 659 LPFVHRDVQASSILLDDKFEVRL 681
+HRD+ A + L+ + +++
Sbjct: 115 ---IHRDLAARNCLVGENNVLKI 134
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP 593
D + + + G G+++ G+ + + V +K + +++ E +L E ++ H LV
Sbjct: 7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ 66
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
LLG C RE +++ ++M G+L L R+ N + ++ + L +A + + YL
Sbjct: 67 LLGVCT-REPPFYIITEFMTYGNLLDYL-RECNRQ----EVNAVVLLYMATQISSAMEYL 120
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRL 681
+ F+HRD+ A + L+ + V++
Sbjct: 121 EKK---NFIHRDLAARNCLVGENHLVKV 145
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT--EAYLLELDFFSKVSHARLV 592
+ + G G ++ + G V IK I + +K E L E+ K+ H +V
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTN-TEDDLQSLDWITRLKIAIGAAEGLS 651
L E E++ +LV +Y GDL L ++ +ED+ + L
Sbjct: 61 RLYDVF-EDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEAR--------FYLRQILSALE 111
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YLH + VHRD++ +ILLD+ V+L
Sbjct: 112 YLHSKG---IVHRDLKPENILLDEDGHVKLA 139
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 561 VVIKRI-DLQSVKT-EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618
V IK + + K + + E + S + H +V LLG C + + L ++Y+ +GDL
Sbjct: 38 VAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCML-FEYLAHGDLH 96
Query: 619 SSLYRKTNTED---------DLQSLDWITRLKIAIGAAEGLSYL--HHECTLPFVHRDVQ 667
L R + D SLD L IAI A G+ YL HH FVHRD+
Sbjct: 97 EFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH-----FVHRDLA 151
Query: 668 ASSILLDDKFEVRL 681
A + L+ + V++
Sbjct: 152 ARNCLVGEGLTVKI 165
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 4e-09
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 14/138 (10%)
Query: 541 LIKNGHSGDLFRGILEGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
L+ G+ G++F+G L+ PV +K + DL +L E + H +V L+G C
Sbjct: 2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE-C 657
+R+ ++V + +P GD S L +K +D+L++ + K A+ AA G++YL + C
Sbjct: 62 TQRQ-PIYIVMELVPGGDFLSFLRKK---KDELKTKQLV---KFALDAAAGMAYLESKNC 114
Query: 658 TLPFVHRDVQASSILLDD 675
+HRD+ A + L+ +
Sbjct: 115 ----IHRDLAARNCLVGE 128
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250 |
| >gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 540 NLIKNGHSGDLFRGIL-------EGGIPVVIKRIDLQSVKTE--AYLLELDFFSKVSHAR 590
N + +G G+++ G G I V +K + + E +L E S +H
Sbjct: 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLY--RKTNTEDDLQSLDWITRLKIAIGAAE 648
+V LLG C+ E + +++ + M GDL S L R L +L + L I + A+
Sbjct: 61 IVKLLGVCLLNEPQ-YIIMELMEGGDLLSYLRDARVERFGPPLLTLKEL--LDICLDVAK 117
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDK 676
G YL + F+HRD+ A + L+ +K
Sbjct: 118 GCVYLEQ---MHFIHRDLAARNCLVSEK 142
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
NL SL LS+N LT + L L VLDLS N+LT P +F L +L SLD+S N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 23/152 (15%)
Query: 540 NLIKNGHSGDLFRGIL----EGGIPVVIK---RI-DLQSVKTEAYLLELDFFSKVSHARL 591
+I GH G ++ G L I +K RI DL+ V E +L E SH +
Sbjct: 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEV--EQFLKEGIIMKDFSHPNV 58
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTN--TEDDLQSLDWITRLKIAIGAAEG 649
+ LLG C+ E +V YM +GDL + + +T+ T DL + + A+G
Sbjct: 59 LSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDL--------IGFGLQVAKG 110
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
+ YL + FVHRD+ A + +LD+ F V++
Sbjct: 111 MEYLASK---KFVHRDLAARNCMLDESFTVKV 139
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262 |
| >gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 542 IKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601
I +G G ++ G V IK I ++ E ++ E K+SH +LV L G C ER
Sbjct: 12 IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER 71
Query: 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661
+ LV+++M +G LS L + T L + + EG++YL
Sbjct: 72 -SPICLVFEFMEHGCLSDYLRAQRG------KFSQETLLGMCLDVCEGMAYLESSN---V 121
Query: 662 VHRDVQASSILLDDKFEVRL 681
+HRD+ A + L+ + V++
Sbjct: 122 IHRDLAARNCLVGENQVVKV 141
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 542 IKNGHSGDLFRGILEGGIP------VVIKRIDLQSVKT--EAYLLELDFFSKVSHARLVP 593
+ G G +F G P V +K + + + + E + + H +V
Sbjct: 13 LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRK-------TNTEDDLQSLDWITRLKIAIGA 646
G C E + +V++YM +GDL+ L + + + L L+IA+
Sbjct: 73 FYGVCTE-GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQI 131
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
A G+ YL + FVHRD+ + L+ V++G
Sbjct: 132 ASGMVYL---ASQHFVHRDLATRNCLVGYDLVVKIG 164
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 39/150 (26%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSK-------VSHARLV 592
+L++ G G +F GIL P + + +++VK A +++ + +SH ++
Sbjct: 12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNIL 71
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYR-KTNTEDDLQSLDWITRLKIAIGAAEGLS 651
P+L C+E F++Y YM G+L L + + ++ Q+L + +AI A G+S
Sbjct: 72 PILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMS 131
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRL 681
YLH +H+D+ A + ++D++ +V++
Sbjct: 132 YLH---KRGVIHKDIAARNCVIDEELQVKI 158
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280 |
| >gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G G V IK + ++ EA+L E K+ H +LVPL + + E
Sbjct: 17 GCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPL--YAVVSEEP 74
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V ++M G L L E D + L + +A A+G++Y+ + ++HR
Sbjct: 75 IYIVTEFMGKGSLLDFL-----KEGDGKYLKLPQLVDMAAQIADGMAYIER---MNYIHR 126
Query: 665 DVQASSILLDDKFEVRLGSL 684
D++A++IL+ D ++
Sbjct: 127 DLRAANILVGDNLVCKIADF 146
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAY---LLELDFFSKVSHAR 590
++ +LI G G +++G+ LE G V IK+I L+ +K EA + E+D + H
Sbjct: 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60
Query: 591 LVPLLGHCMERENEKFL--VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE 648
+V +G E L + +Y NG L + +K + ++ ++ +
Sbjct: 61 IVKYIGS---IETSDSLYIILEYAENGSLRQ-IIKKFGPFPESLVAVYVYQV------LQ 110
Query: 649 GLSYLHHECTLPFVHRDVQASSILL 673
GL+YLH + +HRD++A++IL
Sbjct: 111 GLAYLHEQ---GVIHRDIKAANILT 132
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G G V IK + S+ EA+L E + ++ H RLV L + + +
Sbjct: 17 GQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRL--YAVVTQEP 74
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+++ +YM NG L + KT + L + +A AEG++++ + ++HR
Sbjct: 75 IYIITEYMENGSLVD--FLKT---PEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHR 126
Query: 665 DVQASSILLDD 675
D++A++IL+ +
Sbjct: 127 DLRAANILVSE 137
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260 |
| >gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G G V IK + ++ EA+L E K+ H +LV L + + E
Sbjct: 17 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL--YAVVSEEP 74
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V +YM G L L + L L + +A A G++Y+ + +VHR
Sbjct: 75 IYIVTEYMSKGSLLDFLKGEMGKYLRLPQL-----VDMAAQIASGMAYVER---MNYVHR 126
Query: 665 DVQASSILLDDKF 677
D++A++IL+ +
Sbjct: 127 DLRAANILVGENL 139
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262 |
| >gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 550 LFRGILEGGIPVVIKRIDLQSVKTEA----YLLELDFFSKVSHARLVPLLGHCMERENEK 605
L+RG + + + L +E +L+E SK +H +V L+G ER +
Sbjct: 26 LYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER-LPR 84
Query: 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRD 665
F++ + M GDL S L + SL L A A+G YL F+HRD
Sbjct: 85 FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLE---ENHFIHRD 141
Query: 666 VQASSILL 673
+ A + LL
Sbjct: 142 IAARNCLL 149
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277 |
| >gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 561 VVIKRIDLQSVKTE---AYLLELDFFSKVSHARLVPLLGHCMERENEK---FLVYKYMPN 614
V +K+I +++ K + E+ K+ H +V L + K ++V++YM +
Sbjct: 27 VALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRL--KEIVTSKGKGSIYMVFEYMDH 84
Query: 615 GDLSSSLYRKTN--TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSIL 672
DL+ L TE ++ + +L EGL YLH +HRD++ S+IL
Sbjct: 85 -DLTGLLDSPEVKFTESQIKCY--MKQL------LEGLQYLHSN---GILHRDIKGSNIL 132
Query: 673 LDDKFEVRLG 682
+++ ++L
Sbjct: 133 INNDGVLKLA 142
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 542 IKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601
+ +G G + G G I V IK I ++ + ++ E K+SH LV L G C ++
Sbjct: 12 LGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQ 71
Query: 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661
F+V +YM NG L + L + LD + E + YL F
Sbjct: 72 R-PIFIVTEYMANGCLLNYLRERKGKLGTEWLLD------MCSDVCEAMEYLESNG---F 121
Query: 662 VHRDVQASSILLDDKFEVRL 681
+HRD+ A + L+ + V++
Sbjct: 122 IHRDLAARNCLVGEDNVVKV 141
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQS-VKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603
G+ G+++ G+ + + V IK + +K + + E+ ++ H L+ L C E
Sbjct: 17 GYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGE- 75
Query: 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663
+++ + M G L + L + Q L + + +A AEG++YL + +H
Sbjct: 76 PVYIITELMEKGSLLAFL-----RSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIH 127
Query: 664 RDVQASSILLDDKFEVRLG 682
RD+ A +IL+ + ++
Sbjct: 128 RDLAARNILVGEDLVCKVA 146
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 559 IPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618
+ V + R D+ +L E+ S++ + ++ LLG C+ ++ ++ +YM NGDL+
Sbjct: 47 VAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCV-SDDPLCMITEYMENGDLN 105
Query: 619 SSL-----YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673
L +++ S+ L +A+ A G+ YL +L FVHRD+ + L+
Sbjct: 106 QFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLV 162
Query: 674 DDKFEVRL 681
+ + +++
Sbjct: 163 GNHYTIKI 170
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295 |
| >gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 545 GHSGDLFRGIL------EGGIPVVIKRIDLQSVKTE--AYLLELDFFSKVSHARLVPLLG 596
G G ++ G+ E V IK ++ + E +L E + + +V LLG
Sbjct: 17 GSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLG 76
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKI---AIGAAEGLSYL 653
+V + M GDL S L + ++ L T K A A+G++YL
Sbjct: 77 VV-STGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYL 135
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRLG 682
FVHRD+ A + ++ + V++G
Sbjct: 136 A---AKKFVHRDLAARNCMVAEDLTVKIG 161
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277 |
| >gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 544 NGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603
NG G+++ G G V +K + ++ E++L E K+ H +LV L + + E
Sbjct: 16 NGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQL--YAVVSEE 73
Query: 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663
++V +YM G L L + + ++L + +A A G++Y+ + ++H
Sbjct: 74 PIYIVTEYMSKGSLLDFL-----KDGEGRALKLPNLVDMAAQVAAGMAYIER---MNYIH 125
Query: 664 RDVQASSILLDD 675
RD+++++IL+ D
Sbjct: 126 RDLRSANILVGD 137
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G+ PV +K + ++ + +L E K+ H +L+ L C E
Sbjct: 17 GQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCT-LEEP 75
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V + M G L L L L + +A A G++YL + ++HR
Sbjct: 76 IYIVTELMKYGSLLEYLQGGAGRALKLPQL-----IDMAAQVASGMAYLEAQ---NYIHR 127
Query: 665 DVQASSILLDD 675
D+ A ++L+ +
Sbjct: 128 DLAARNVLVGE 138
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-07
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202
L++LDL + ++ + + L NL L LS N LT P + L L LDLS N+L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 267 LDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGP 326
L L L G +P+++ LR LQ + N + GN+ + +++ L+++ L N F G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481
Query: 327 PPDVLWSMPQLRLLDISRNNFTGPLPNS 354
P+ L + LR+L+++ N+ +G +P +
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAA 509
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-06
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSL 250
L LDLS N LT +F L NL LD+S N LT SI P L L+ L++S N+L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 541 LIKNGHSGDLFRGI---LEG-GIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPL 594
I G GD+++G+ E I V +K + E +L E + H +V L
Sbjct: 13 CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72
Query: 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH 654
+G EN ++V + P G+L S Y + N SLD + + + + L+YL
Sbjct: 73 IGVI--TENPVWIVMELAPLGELRS--YLQVNKY----SLDLASLILYSYQLSTALAYLE 124
Query: 655 HECTLPFVHRDVQASSILLDDKFEVRLG 682
+ FVHRD+ A ++L+ V+LG
Sbjct: 125 ---SKRFVHRDIAARNVLVSSPDCVKLG 149
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270 |
| >gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 11/136 (8%)
Query: 574 EAYLLELDFFSKVSHARLVPLLGHCME-RENEKF----LVYKYMPNGDLSSSLYRKTNTE 628
E +L E H ++ L+G C E +K ++ +M +GDL S L +
Sbjct: 46 EEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLY-SRLG 104
Query: 629 DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS--LSE 686
+ L T LK + A G+ YL F+HRD+ A + +L + V + LS+
Sbjct: 105 GLPEKLPLQTLLKFMVDIALGMEYL---SNRNFIHRDLAARNCMLREDMTVCVADFGLSK 161
Query: 687 VCAQGGDAHQSRITRL 702
G Q RI ++
Sbjct: 162 KIYSGDYYRQGRIAKM 177
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273 |
| >gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 542 IKNGHSGDLFRGILEGGIP---VVIKRIDLQSVKTE--AYLLELDFFSKVSHARLVPLLG 596
I NG G + G G+ VV+K + + E +L E+ + +++H ++ LG
Sbjct: 3 IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLG 62
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
C+E LV ++ P GDL + Y ++N Q ++A A GL +LH
Sbjct: 63 QCIE-SIPYLLVLEFCPLGDLKN--YLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQ- 118
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
F+H D+ + L V++G
Sbjct: 119 --ADFIHSDLALRNCQLTADLSVKIG 142
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 542 IKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601
I G GD+ G G V +K I +A+L E +++ H+ LV LLG +E
Sbjct: 14 IGKGEFGDVMLGDYRG-NKVAVKCIK-NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE 71
Query: 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661
+ ++V +YM G L L + + L LK ++ E + YL F
Sbjct: 72 KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL-----LKFSLDVCEAMEYLEAN---NF 123
Query: 662 VHRDVQASSILLDD 675
VHRD+ A ++L+ +
Sbjct: 124 VHRDLAARNVLVSE 137
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-06
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 215 NLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
NL SLD+S+N LT IP G L L+ L++S N+L S P L SL LDLS N+
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 274 L 274
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 542 IKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL--ELDFFSKVSHARLVPLLGHC 598
I G + ++ I L V IKRIDL+ +T L E+ S+ +H +V
Sbjct: 9 IGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSF 68
Query: 599 MERENEKFLVYKYMPNG---DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH 655
+ + E +LV Y+ G D+ S Y + ++ + + T LK +GL YLH
Sbjct: 69 VVGD-ELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIA----TVLK---EVLKGLEYLHS 120
Query: 656 ECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGD-AHQSRIT 700
+HRD++A +ILL + V++ +S A GGD + R T
Sbjct: 121 NGQ---IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKT 165
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267 |
| >gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 565 RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSS--SLY 622
R+++ + L ELD K + +V G + + +YM G L
Sbjct: 35 RLEINEAIQKQILRELDILHKCNSPYIVGFYGAFY-NNGDISICMEYMDGGSLDKILKEV 93
Query: 623 RKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
+ E L KIA+ +GL+YLH +HRDV+ S+IL++ + +++L
Sbjct: 94 QGRIPERILG--------KIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKL 142
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265 |
| >gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 22/137 (16%)
Query: 561 VVIKRIDL---QSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616
V IK++ QS K + + E+ F ++ H + G C RE+ +LV +Y G
Sbjct: 43 VAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKG-CYLREHTAWLVMEYCL-GS 100
Query: 617 LSSSL--YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674
S L ++K E ++ + I GA +GL+YLH +HRD++A +ILL
Sbjct: 101 ASDILEVHKKPLQEVEIAA--------ICHGALQGLAYLHSHER---IHRDIKAGNILLT 149
Query: 675 DKFEVRL---GSLSEVC 688
+ V+L GS S V
Sbjct: 150 EPGTVKLADFGSASLVS 166
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307 |
| >gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 535 DFSDANLIKN---GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
D D +K G G + G G V IK I S+ + ++ E K+SH +L
Sbjct: 2 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKL 61
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V L G C ++ ++V +YM NG L + L R+ L L++ EG++
Sbjct: 62 VQLYGVC-TKQRPIYIVTEYMSNGCLLNYL-REHGKRFQPSQL-----LEMCKDVCEGMA 114
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRL 681
YL + F+HRD+ A + L+DD+ V++
Sbjct: 115 YLESK---QFIHRDLAARNCLVDDQGCVKV 141
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256 |
| >gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 574 EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDL-- 631
E +L E+ S++S + LLG C + ++ +YM NGDL+ L + L
Sbjct: 64 EDFLKEVKILSRLSDPNIARLLGVCT-VDPPLCMIMEYMENGDLNQFLQKHVAETSGLAC 122
Query: 632 --QSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680
+SL + T L +A A G+ YL +L FVHRD+ + L+ + ++
Sbjct: 123 NSKSLSFSTLLYMATQIASGMRYLE---SLNFVHRDLATRNCLVGKNYTIK 170
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296 |
| >gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 542 IKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601
I G G + +G G V +K I V +A+L E +K+ H LV LLG +
Sbjct: 14 IGEGEFGAVLQGEYTGQ-KVAVKNIKC-DVTAQAFLEETAVMTKLHHKNLVRLLGVIL-- 69
Query: 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661
N ++V + M G+L + L + + L L+ ++ AEG+ YL +
Sbjct: 70 HNGLYIVMELMSKGNLVNFLRTRGRALVSVIQL-----LQFSLDVAEGMEYLESK---KL 121
Query: 662 VHRDVQASSILLDD 675
VHRD+ A +IL+ +
Sbjct: 122 VHRDLAARNILVSE 135
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254 |
| >gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 7e-06
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEA-------YLLELDFFSKVSHARLV 592
++ G G ++ G+ G + +K+++L + A E+D + H +V
Sbjct: 6 EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
LG C++ +N + +++P G +SS L R L K +G++Y
Sbjct: 66 QYLGTCLD-DNTISIFMEFVPGGSISSILNR-------FGPLPEPVFCKYTKQILDGVAY 117
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRITRLLR 704
LH+ C VHRD++ ++++L ++L G + G S + + +
Sbjct: 118 LHNNCV---VHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMH 169
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265 |
| >gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 559 IPVVIKRIDLQS--VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616
IPV IK + ++ + L E + V H +V LLG C+ + + L+ + MP G
Sbjct: 37 IPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQ--LITQLMPLGC 94
Query: 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHECTLPFVHRDVQASSILL 673
L + + L+W ++ A+G+SYL VHRD+ A ++L+
Sbjct: 95 LLDYVRNHKDNIGSQYLLNWCVQI------AKGMSYLEEKR-----LVHRDLAARNVLV 142
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279 |
| >gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 29/132 (21%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G V +K + ++ +A+L E + + H +LV L + +E
Sbjct: 17 GQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYA-VVTKEEP 75
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDL-QSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663
+++ +YM G L L + L + +D+ ++ AEG++Y+ + ++H
Sbjct: 76 IYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQI------AEGMAYIERK---NYIH 126
Query: 664 RDVQASSILLDD 675
RD++A+++L+ +
Sbjct: 127 RDLRAANVLVSE 138
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 9e-06
Identities = 64/260 (24%), Positives = 98/260 (37%), Gaps = 51/260 (19%)
Query: 141 LPTLQALDLRSCSISGV-IPFSLGNLT---NLTSLYLSDNGL------TGTIPSSLGQLS 190
L LQ L L ++ L +L L LS N ++ L +
Sbjct: 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81
Query: 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL 250
L LDLS N+L P G+L++L S LQ L ++NN L
Sbjct: 82 GLQELDLSDNALG---PDGCGVLESLLR------------------SSSLQELKLNNNGL 120
Query: 251 ASS----IPAQLGDLD-SLVDLDLSMNSLSG----SVPSELRGLRSLQKFVIGNNFLSGN 301
+ L DL +L L L N L G ++ LR R L++ + NN +
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180
Query: 302 LSVNL---FPTVSQLQIIVLRQNGFT----GPPPDVLWSMPQLRLLDISRNNFTGP---- 350
L L+++ L NG T + L S+ L +L++ NN T
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240
Query: 351 LPNSRSNVNTSTVELNISQN 370
L ++ + N S + L++S N
Sbjct: 241 LASALLSPNISLLTLSLSCN 260
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 18/169 (10%)
Query: 536 FSDANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPL 594
+ + I G SG++++ G V IK++ L+ E + E+ H +V
Sbjct: 21 YKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDY 80
Query: 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE---GLS 651
+E ++V +YM G L+ + + ++ Q IA E GL
Sbjct: 81 YD-SYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQ---------IAYVCREVLQGLE 130
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRIT 700
YLH + +HRD+++ +ILL V+L AQ R +
Sbjct: 131 YLH---SQNVIHRDIKSDNILLSKDGSVKLADFG-FAAQLTKEKSKRNS 175
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286 |
| >gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 559 IPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618
I V IK I+ ++ E ++ E K+SH +LV L G C +++ ++V ++M NG L
Sbjct: 29 IKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK-PLYIVTEFMENGCLL 87
Query: 619 SSLYRKTN--TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676
+ L ++ ++D L L + EG+ YL F+HRD+ A + L+
Sbjct: 88 NYLRQRQGKLSKDML--------LSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSST 136
Query: 677 FEVRL 681
V++
Sbjct: 137 GVVKV 141
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256 |
| >gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR-L 591
G F L+ NG G +++G ++ G IK +D+ + E E++ K SH R +
Sbjct: 6 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNI 65
Query: 592 VPLLGHCMER-----ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646
G +++ +++ +LV ++ G ++ + NT+ + +WI + I
Sbjct: 66 ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLI---KNTKGNTLKEEWIAYICREI-- 120
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
GLS+LH +HRD++ ++LL + EV+L
Sbjct: 121 LRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKL 152
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272 |
| >gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 577 LLELDFFSKVSHARLVPLLGHCM-ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLD 635
L EL+ +V G + E + + +Y G L S +Y+K ++
Sbjct: 47 LRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDS-IYKK------VKKRG 99
Query: 636 WITR----LKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
KIA +GLSYLH +HRD++ S+ILL K +V+L
Sbjct: 100 GRIGEKVLGKIAESVLKGLSYLHSRKI---IHRDIKPSNILLTRKGQVKL 146
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-05
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 239 KLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNN 296
L+ L++SNN L L +L LDLS N+L+ P GL SL+ + N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
|
Length = 60 |
| >gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 536 FSDANLIKNGHSGDLF--RGILEGGIPVVIKRIDLQSVKT----EAYLLELDFFSKVSHA 589
FSD I +G G ++ R + + V IK++ ++ + + E+ F K+ H
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEV-VAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHP 75
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
+ G C RE+ +LV +Y G S L E + L + + GA +G
Sbjct: 76 NTIQYRG-CYLREHTAWLVMEYCL-GSASDLL------EVHKKPLQEVEIAAVTHGALQG 127
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
L+YLH +HRDV+A +ILL + V+LG
Sbjct: 128 LAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDF 159
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308 |
| >gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 22/172 (12%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYL-LELDFFSKVSHARLV 592
G F + L++ +G ++ ++++ D+ + A++ E D + A +V
Sbjct: 12 GAFGEVRLVQKKDTGHIY-------AMKILRKADMLEKEQVAHIRAERDILVEADGAWVV 64
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRK-TNTEDDLQSLDWITRLKIAIGAAEGLS 651
+ ++ N +L+ +++P GD+ + L +K T +E+ Q +I +AI A
Sbjct: 65 KMFYSFQDKRN-LYLIMEFLPGGDMMTLLMKKDTLSEEATQF--YIAETVLAIDA----- 116
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLL 703
+H L F+HRD++ ++LLD K V+L +C AH++ R L
Sbjct: 117 -IHQ---LGFIHRDIKPDNLLLDAKGHVKLSDFG-LCTGLKKAHRTEFYRNL 163
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360 |
| >gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 36/160 (22%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHAR 590
G F L++ G L+ V+K IDL ++ E L E+ K++H
Sbjct: 11 GSFGKVYLVRRKSDGKLY----------VLKEIDLSNMSEKEREDALNEVKILKKLNHPN 60
Query: 591 LVPLLGHCMER--ENEKFL-VYKYMPNGDLSSSL--YRKTN---TEDDLQSLDWITRLKI 642
++ E E K V +Y GDLS + +K E+ Q LDW +L
Sbjct: 61 II----KYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEE--QILDWFVQL-- 112
Query: 643 AIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L YLH L HRD++ +I L V+LG
Sbjct: 113 ----CLALKYLHSRKIL---HRDIKPQNIFLTSNGLVKLG 145
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258 |
| >gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 541 LIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVKTEA----YLLELDFFSKVSHARLV 592
+I G G++FRGIL+ + V IK L+ TE +L E + SH ++
Sbjct: 12 VIGAGEFGEVFRGILKMPGRKEVAVAIK--TLKPGYTEKQRQDFLSEASIMGQFSHHNII 69
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
L G + + ++ +YM NG L L + + S + L+ G A G+ Y
Sbjct: 70 RLEG-VVTKFKPAMIITEYMENGALDKYLRDH---DGEFSSYQLVGMLR---GIAAGMKY 122
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRL 681
L + +VHRD+ A +IL++ E ++
Sbjct: 123 LSD---MNYVHRDLAARNILVNSNLECKV 148
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 32/190 (16%)
Query: 137 LGQQLPT---LQALDLRSCSISGVIPFSLGNLTNLTSL---YLSDNGLTGT----IPSSL 186
L Q L LQ LDL ++ L +L +SL L++NGL + L
Sbjct: 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132
Query: 187 GQLSV-LSVLDLSRNSLTGNIPTSFGLLKNLSS------LDISSNYLTG----SIPPGLG 235
L L L L RN L G + L K L + L++++N + ++ GL
Sbjct: 133 KDLPPALEKLVLGRNRLEGA--SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190
Query: 236 TLSKLQYLNVSNNSL----ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL-----RGLR 286
L+ L+++NN L AS++ L L SL L+L N+L+ + + L
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250
Query: 287 SLQKFVIGNN 296
SL + N
Sbjct: 251 SLLTLSLSCN 260
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 545 GHSGDLFRGILEG-GIPVVIKRI--DLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601
G SG +++ + G +K+I D + L EL +V G +
Sbjct: 12 GSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYG-AFYK 70
Query: 602 ENEKFLVYKYMPNGDLSSSLYR-KTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP 660
E E +V +YM G L+ L + E L IA +GL YLH
Sbjct: 71 EGEISIVLEYMDGGSLADLLKKVGKIPEPVLA--------YIARQILKGLDYLHT--KRH 120
Query: 661 FVHRDVQASSILLDDKFEVRL 681
+HRD++ S++L++ K EV++
Sbjct: 121 IIHRDIKPSNLLINSKGEVKI 141
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP 593
G F + +++ +GD++ + V+ K + L + E D S +S++ +P
Sbjct: 12 GHFGEVQVVREKATGDIY------AMKVMKKSVLLAQETVSFFEEERDILS-ISNSPWIP 64
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
L + + ++ +LV +Y P GDL S L R + D+ + ++ L +AI + +
Sbjct: 65 QLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHS------V 118
Query: 654 HHECTLPFVHRDVQASSILLD 674
H + +VHRD++ ++L+D
Sbjct: 119 H---QMGYVHRDIKPENVLID 136
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.5 bits (106), Expect = 7e-05
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 541 LIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLL----ELDFFSKVSHARLVPLLG 596
+ G G+++ V +K + + + E+ + ++H + L
Sbjct: 7 KLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLY 64
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
+ E +LV +Y+ G L L K S + I L YLH
Sbjct: 65 DFFQDEGSLYLVMEYVDGGSLEDLL--KKIGRKGPLSESEALFILAQI--LSALEYLH-- 118
Query: 657 CTLPFVHRDVQASSILLDDK 676
+ +HRD++ +ILLD
Sbjct: 119 -SKGIIHRDIKPENILLDRD 137
|
Length = 384 |
| >gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL--ELDFFSKVSHARLV 592
F+ I G G++++ I V IK IDL+ + E + E+ F S+ +
Sbjct: 3 FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYIT 62
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE---G 649
G + ++ +++ +Y G L E IA E G
Sbjct: 63 KYYG-SFLKGSKLWIIMEYCGGGSCLDLLKPGKLDET-----------YIAFILREVLLG 110
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L YLH E +HRD++A++ILL ++ +V+L
Sbjct: 111 LEYLHEEGK---IHRDIKAANILLSEEGDVKLA 140
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274 |
| >gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR-L 591
G F ++ NG G +++G ++ G IK +D+ + E LE++ K SH R +
Sbjct: 16 GIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNI 75
Query: 592 VPLLGHCMER-----ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646
G +++ +++ +LV ++ G ++ + NT+ + DWI + I
Sbjct: 76 ATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLV---KNTKGNALKEDWIAYICREI-- 130
Query: 647 AEGLSYLH-HECTLPFVHRDVQASSILLDDKFEVRL 681
GL++LH H+ +HRD++ ++LL + EV+L
Sbjct: 131 LRGLAHLHAHKV----IHRDIKGQNVLLTENAEVKL 162
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282 |
| >gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 570 SVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV--YKYMPNGDLSSSLYRKTNT 627
S + A E+ + H R+V G C+ EK L +YMP G + L
Sbjct: 45 SKEVSALECEIQLLKNLQHERIVQYYG-CLRDRAEKTLTIFMEYMPGGSVKDQLKAYGAL 103
Query: 628 EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS---- 683
+ +TR K EG+SYLH VHRD++ ++IL D V+LG
Sbjct: 104 TES------VTR-KYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGAS 153
Query: 684 --LSEVCAQG 691
L +C G
Sbjct: 154 KRLQTICMSG 163
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266 |
| >gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 574 EAYLLELDFFSKVSHARLVPLLGHCMER-ENEKF----LVYKYMPNGDLSSSL-YRKTNT 627
E +L E + H ++ L+G C++ E+E + ++ +M +GDL S L Y +
Sbjct: 45 EDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLG- 103
Query: 628 EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS--LS 685
D Q L +K A G+ YL + F+HRD+ A + +L++ V + LS
Sbjct: 104 -DCPQYLPTQMLVKFMTDIASGMEYL---SSKSFIHRDLAARNCMLNENMNVCVADFGLS 159
Query: 686 EVCAQGGDAHQSRITRL 702
+ G Q RI ++
Sbjct: 160 KKIYNGDYYRQGRIAKM 176
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272 |
| >gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKR--IDLQSVKTEAYLLELD----FFSKVSHARLVP 593
L+ +G G ++ G+ L+ G +K + + + +L+ SK+ H +V
Sbjct: 7 LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66
Query: 594 LLGHCMERENEKFLVY-KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
LG ERE + ++ + +P G L+ L +K + + + TR + GL Y
Sbjct: 67 YLG--TEREEDNLYIFLELVPGGSLAK-LLKKYGSFPEPVIRLY-TRQILL-----GLEY 117
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRL 681
LH T VHRD++ ++IL+D V+L
Sbjct: 118 LHDRNT---VHRDIKGANILVDTNGVVKL 143
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258 |
| >gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 559 IPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDL- 617
+ V I R D +L E+ S++ ++ LLG C++ E+ ++ +YM NGDL
Sbjct: 49 VAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVD-EDPLCMITEYMENGDLN 107
Query: 618 ----SSSLYRKTNTEDD-------LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV 666
S L K +D L ++ + + L +A+ A G+ YL +L FVHRD+
Sbjct: 108 QFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYL---SSLNFVHRDL 164
Query: 667 QASSILLDDKFEVRL 681
+ L+ + +++
Sbjct: 165 ATRNCLVGENLTIKI 179
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304 |
| >gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRID---LQSVKTEAY-LLELDFFSKVSHA 589
DF +I G + E IK +D L K Y +E + ++++
Sbjct: 2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGH 61
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE- 648
+ L + + E + V +Y PNG+L + + D + + AE
Sbjct: 62 PGIIKLYYTFQDEENLYFVLEYAPNGELLQYI--RKYGSLDEKCTRFYA--------AEI 111
Query: 649 --GLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
L YLH + +HRD++ +ILLD +++
Sbjct: 112 LLALEYLH---SKGIIHRDLKPENILLDKDMHIKI 143
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280 |
| >gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 606 FLVYKYMPNGDLSSSLYRK-TNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+L+ +++P GD+ + L +K T TE++ Q +I +AI + +H L F+HR
Sbjct: 77 YLIMEFLPGGDMMTLLMKKDTLTEEETQF--YIAETVLAIDS------IHQ---LGFIHR 125
Query: 665 DVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLL 703
D++ ++LLD K V+L +C AH++ R L
Sbjct: 126 DIKPDNLLLDSKGHVKLSDFG-LCTGLKKAHRTEFYRNL 163
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363 |
| >gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKT----EAYLLELDFFSKVSHA 589
G F N H+ ++ V +K++ +T + + E+ F ++ H
Sbjct: 32 GSFGAVYFATNSHTNEV----------VAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHP 81
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
+ G C +E+ +LV +Y G S L E + L + I GA +G
Sbjct: 82 NTIEYKG-CYLKEHTAWLVMEYCL-GSASDLL------EVHKKPLQEVEIAAITHGALQG 133
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEV 687
L+YLH +HRD++A +ILL + +V+L GS S+
Sbjct: 134 LAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKS 171
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313 |
| >gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 542 IKNGHSGDLFRGILEG-GIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
I G+ G++F G L PV +K R L +L E + SH +V L+G C
Sbjct: 3 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
+++ ++V + + GD + L + L +++ AA G+ YL +
Sbjct: 63 TQKQ-PIYIVMELVQGGDFLTFL------RTEGPRLKVKELIQMVENAAAGMEYLESKHC 115
Query: 659 LPFVHRDVQASSILLDDK 676
+HRD+ A + L+ +K
Sbjct: 116 ---IHRDLAARNCLVTEK 130
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252 |
| >gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 540 NLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSVKTE--AYLLELDFFSKVSHARLVP 593
+I G G++ RG L + I V IK + S + +L E + H ++
Sbjct: 10 KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIR 69
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
L G + ++ +YM NG L L R+ + + + G A G+ YL
Sbjct: 70 LEGVVTKSR-PVMIITEYMENGSLDKFL-REND-----GKFTVGQLVGMLRGIASGMKYL 122
Query: 654 HHECTLPFVHRDVQASSILLD 674
+VHRD+ A +IL++
Sbjct: 123 SEMN---YVHRDLAARNILVN 140
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 243 LNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302
L + N L IP + L L ++LS NS+ G++P L + SL+ + N +G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 303 SVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
+L ++ L+I+ L N +G P L RLL + NFT
Sbjct: 483 PESL-GQLTSLRILNLNGNSLSGRVPAALGG----RLLHRASFNFT 523
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 62/220 (28%), Positives = 81/220 (36%), Gaps = 38/220 (17%)
Query: 162 LGNLTNLTSLYLSDNGLTGTIP---SSLGQLSVLSVLDLSRNSLTGNI-PTSFGLLK--- 214
L L L LSDN L SL + S L L L+ N L LK
Sbjct: 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136
Query: 215 -NLSSLDISSNYLTG-SIPPGLGTLS---KLQYLNVSNNSL-ASSIPA---QLGDLDSLV 265
L L + N L G S L L+ LN++NN + + I A L +L
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196
Query: 266 DLDLSMNSLS---GSVPSE-LRGLRSLQKFVIGNN---------FLSGNLSVNLFPTVSQ 312
LDL+ N L+ S +E L L+SL+ +G+N S LS N
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN-----IS 251
Query: 313 LQIIVLRQNGFTGPP----PDVLWSMPQLRLLDISRNNFT 348
L + L N T +VL L LD+ N F
Sbjct: 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 579 ELDFFSKVSHARLVPLLGHCMERENEKFLVY-KYMPNGDLSSSLYRK---TNTEDDLQSL 634
E+ + H R+V G R++E ++ +YMP G + L T T
Sbjct: 54 EIQLLKNLQHERIVQYYG--CLRDDETLSIFMEYMPGGSVKDQLKAYGALTET------- 104
Query: 635 DWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS------LSEVC 688
+TR K EG+ YLH + VHRD++ ++IL D V+LG L +C
Sbjct: 105 --VTR-KYTRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC 158
Query: 689 AQGG 692
+ G
Sbjct: 159 SSGT 162
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263 |
| >gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 529 LLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS 587
L TG F +I G G +++ + G V IK +D+ + E E + K S
Sbjct: 1 LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS 60
Query: 588 HARLVP------LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLK 641
+ + + + +++ +LV + G ++ L + + +WI
Sbjct: 61 NHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTD-LVKGLRKKGKRLKEEWIAY-- 117
Query: 642 IAIGAAEGLSYLH-HECTLPFVHRDVQASSILLDDKFEVRL 681
I GL+YLH ++ +HRD++ +ILL EV+L
Sbjct: 118 ILRETLRGLAYLHENKV----IHRDIKGQNILLTKNAEVKL 154
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275 |
| >gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL---ELDFFSKVSHARLVPLL 595
N I G G ++ + L+ G + +K I +Q + E+ + H LV
Sbjct: 6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY 65
Query: 596 GHCMERENEKFLVY-KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH 654
G +E EK ++ +Y G L L D+ + R+ + EGL+YLH
Sbjct: 66 G--VEVHREKVYIFMEYCSGGTLEELL-EHGRILDEH-----VIRV-YTLQLLEGLAYLH 116
Query: 655 HECTLPFVHRDVQASSILLDDKFEVRLG 682
+ VHRD++ ++I LD ++LG
Sbjct: 117 -SHGI--VHRDIKPANIFLDHNGVIKLG 141
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264 |
| >gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 535 DFSDANLIKNGHSGDLFRGILEGGIPV-VIKRIDLQSVKT---EAYLLELDFFSKVSHAR 590
DF N I G G +F+ + + V +K+IDL + E + E +K+ +
Sbjct: 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60
Query: 591 LVPLLGHCMERENEKFL-------VYKYMPNGDLSSSL--YRKTNTEDDLQSLDWITRLK 641
++ R E FL V +Y NGDL L R +D W +
Sbjct: 61 II--------RYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQV---W----R 105
Query: 642 IAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
I GL++LH + +HRD+++ ++ LD V++G L
Sbjct: 106 FFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDL 145
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256 |
| >gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 573 TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF-LVYKYMPNGDLSSSLYRKTNTEDDL 631
T + E++ + H +V G C E+ + L+ +Y+P G L L +
Sbjct: 50 TSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPK-------- 101
Query: 632 QSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L+ L A EG++YLH + ++HRD+ A ++LLD+ V++G
Sbjct: 102 HKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIG 149
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283 |
| >gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 579 ELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKT-------NTEDD- 630
E +++ H +V LLG + +E ++++Y+ GDL L ++ ++++D
Sbjct: 57 EASLMAELHHPNIVCLLG-VVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDG 115
Query: 631 --LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
SLD L IAI A G+ YL FVH+D+ A +IL+ ++ V++ L
Sbjct: 116 TVKSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDL 168
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283 |
| >gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 7e-04
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 579 ELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWIT 638
E+ F ++ H + G C RE+ +LV +Y G S L E + L +
Sbjct: 75 EVKFLQRIKHPNSIEYKG-CYLREHTAWLVMEYCL-GSASDLL------EVHKKPLQEVE 126
Query: 639 RLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
I GA +GL+YLH +HRD++A +ILL + +V+L
Sbjct: 127 IAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADF 169
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317 |
| >gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 576 YLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTED----DL 631
+L E+ S++ ++ LL C+ + ++ +YM NGDL+ L R E D+
Sbjct: 66 FLKEIKIMSRLKDPNIIRLLAVCIT-SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADV 124
Query: 632 QSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
++ + T + +A A G+ YL +L FVHRD+ + L+ + +++
Sbjct: 125 VTISYSTLIFMATQIASGMKYL---SSLNFVHRDLATRNCLVGKNYTIKI 171
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296 |
| >gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 561 VVIKRIDLQSVKTEAYLL---ELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDL 617
V +K+I+L S E L E+ ++ H ++P + ++E ++V M G
Sbjct: 28 VAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYV-TSFIVDSELYVVSPLMAYG-- 84
Query: 618 SSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677
S KT+ + L L LK L Y+H + F+HR V+AS ILL
Sbjct: 85 SCEDLLKTHFPEGLPELAIAFILK---DVLNALDYIHSK---GFIHRSVKASHILLSGDG 138
Query: 678 EVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSE 710
+V L L + H R + P+SS
Sbjct: 139 KVVLSGLRYSVSM--IKHGKRQRVVHDFPKSSV 169
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314 |
| >gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 8e-04
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 22/118 (18%)
Query: 561 VVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEK-FLVYKYMPNGDLSS 619
+IKR +++ TE +L +++H +V L H + EK +LV +Y P G+L S
Sbjct: 30 KIIKRKEVEHTLTERNILS-----RINHPFIVKL--HYAFQTEEKLYLVLEYAPGGELFS 82
Query: 620 SLYRKTN-TEDDLQSLDWITRLKIA-IGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675
L ++ +E+ R A I L YLH +L ++RD++ +ILLD
Sbjct: 83 HLSKEGRFSEER-------ARFYAAEI--VLALEYLH---SLGIIYRDLKPENILLDA 128
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250 |
| >gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 548 GDLFRGILEGGIP------VVIKRID--LQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
G +++G L G P V IK + + E + E S++ H +V LLG +
Sbjct: 19 GKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLG-VV 77
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKT------NTEDDL---QSLDWITRLKIAIGAAEGL 650
+E +++ Y + DL L ++ +T+DD +L+ + I A G+
Sbjct: 78 TKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGM 137
Query: 651 SYL--HHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
+L HH H+D+ ++L+ DK V++ L
Sbjct: 138 EFLSSHHVV-----HKDLATRNVLVFDKLNVKISDL 168
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283 |
| >gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP 593
G F + L+++ +G ++ + V+ K ++ + E D + +V
Sbjct: 12 GAFGEVWLVRDKDTGQVY------AMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVK 65
Query: 594 LLGHC-MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIA-IGAAEGLS 651
L + + E +LV +YMP GDL + L RK ++ R IA + A L
Sbjct: 66 L--YYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEE------TARFYIAELVLA--LD 115
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQS 697
+H L F+HRD++ +IL+D ++L G C + A
Sbjct: 116 SVH---KLGFIHRDIKPDNILIDADGHIKLADFGL----CKKMNKAKDR 157
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 579 ELDFFSKVSHARLVPLLGHCMER-ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWI 637
E++ + H +V G C + L+ +Y+P+G L L R + ++
Sbjct: 56 EIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRD------QINLK 109
Query: 638 TRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDAH 695
L + +G+ YL + ++HRD+ A +IL++ + V++ L++V + D +
Sbjct: 110 RLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYY 166
Query: 696 QSR 698
+
Sbjct: 167 YVK 169
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 556 EGGIPVVIKRIDLQSVKT-EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614
E G K I+ +S + E Y++E++ + +H +V LLG + + +++ ++ P
Sbjct: 35 ETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLG-AFYWDGKLWIMIEFCPG 93
Query: 615 GDLSSSLYR--KTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSIL 672
G + + + + TE +Q I R + E L YLH ++ +HRD++A ++L
Sbjct: 94 GAVDAIMLELDRGLTEPQIQV---ICRQML-----EALQYLH---SMKIIHRDLKAGNVL 142
Query: 673 LDDKFEVRLGSLSEVCAQGGDAHQSR 698
L +++L V A+ Q R
Sbjct: 143 LTLDGDIKLADFG-VSAKNVKTLQRR 167
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292 |
| >gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ V +K + S+ EA+L E + + H +LV L H + +
Sbjct: 17 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL--HAVVTKEP 74
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+++ ++M G L L ++ L L + + AEG++++ ++HR
Sbjct: 75 IYIITEFMAKGSLLDFLKSDEGSKQPLPKL-----IDFSAQIAEGMAFIEQR---NYIHR 126
Query: 665 DVQASSILL 673
D++A++IL+
Sbjct: 127 DLRAANILV 135
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 318 LRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT 377
L G G P+ + + L+ +++S N+ G +P S ++ TS L++S N F G +
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIP 483
Query: 378 PVLGR---FRLVDLSGNYFEGRVP 398
LG+ R+++L+GN GRVP
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 570 SVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY-KYMPNGDLSSSLYRKTNTE 628
S + A E+ + H R+V G + E +K ++ +YMP G + L
Sbjct: 45 SKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYGALT 104
Query: 629 DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
++ +TR + +G+SYLH VHRD++ ++IL D V+LG
Sbjct: 105 EN------VTR-RYTRQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLG 148
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264 |
| >gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 579 ELDFFSKVS-HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDD------- 630
EL+ K+ H ++ LLG C E +L +Y P+G+L L + E D
Sbjct: 57 ELEVLCKLGHHPNIINLLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIAN 115
Query: 631 --LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
+L L A A G+ YL + F+HRD+ A +IL+ + + ++
Sbjct: 116 STASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADF 168
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 40/227 (17%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-G 187
+P ++PD T+Q ++L SI+ + + L SL L N ++ +P +L
Sbjct: 235 IPATLPD-------TIQEMEL---SINRITELPERLPSALQSLDLFHNKIS-CLPENLPE 283
Query: 188 QLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT---GSIPPGLGTLSKLQYLN 244
+L LSV D S +L ++P+ ++ L++ SN LT ++PPGL TL
Sbjct: 284 ELRYLSVYDNSIRTLPAHLPSG------ITHLNVQSNSLTALPETLPPGLKTL------- 330
Query: 245 VSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304
+ + +S+PA L L LD+S N ++ +P L ++ + N L+ NL
Sbjct: 331 EAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPE 384
Query: 305 NLFPTVSQLQIIVLRQNGFTGPP---PDVLWSMPQLRLLDISRNNFT 348
NL + LQI+ +N P P PQ + + N F+
Sbjct: 385 NL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428
|
Length = 754 |
| >gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 564 KRIDLQSVKTEAYLL-ELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLY 622
KRI + K EA L E KV ++R V L + E ++ LV M GDL +Y
Sbjct: 36 KRI--KKRKGEAMALNEKRILEKV-NSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIY 92
Query: 623 RKTNTEDDLQSLDWITRLKIAIGAAE---GLSYLHHECTLPFVHRDVQASSILLDDKFEV 679
N D Q + AAE GL L E V+RD++ +ILLDD+ +
Sbjct: 93 NMGNPGFDEQ--------RAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHI 141
Query: 680 RLGSL 684
R+ L
Sbjct: 142 RISDL 146
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285 |
| >gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 562 VIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSL 621
V+ R VK E D ++ + +V L +++N F V Y+P GD+ S L
Sbjct: 39 VLMRNQAAHVKAER-----DILAEADNEWVVKLYYSFQDKDNLYF-VMDYIPGGDMMSLL 92
Query: 622 YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
R E+DL +I L AI +H + F+HRD++ +IL+D ++L
Sbjct: 93 IRLGIFEEDLARF-YIAELTCAI------ESVHK---MGFIHRDIKPDNILIDRDGHIKL 142
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376 |
| >gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP 593
G + L K +GD++ I V+ K ++ + + L E D S+ +V
Sbjct: 4 GAYGRVFLAKKKSTGDIY------AIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVK 57
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLD-WITRLKIA-IGAAEGLS 651
L + + + +LV +Y+P GDL+S L +++ SLD + R+ IA I A L
Sbjct: 58 LY-YSFQGKKNLYLVMEYLPGGDLASLL-------ENVGSLDEDVARIYIAEIVLA--LE 107
Query: 652 YLHHECTLPFVHRDVQASSILLDD 675
YLH + +HRD++ +IL+D
Sbjct: 108 YLH---SNGIIHRDLKPDNILIDS 128
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265 |
| >gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 579 ELDFFSKVSHARLVPLLGHCMERENEKF-LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWI 637
E++ + H +V G C E L+ +++P+G L L R N ++
Sbjct: 56 EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKN------KINLK 109
Query: 638 TRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
+LK A+ +G+ YL + +VHRD+ A ++L++ + +V++G
Sbjct: 110 QQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIG 151
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284 |
| >gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 536 FSDANLIKNGHSGDLFRGILEGGIPVV-IKRIDLQSVKTEAYLL--ELDFFSKVSHARLV 592
F+ I G G++F+GI VV IK IDL+ + E + E+ S+ +
Sbjct: 6 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 65
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
G + + + +++ +Y+ G L + D+ Q T LK + +GL Y
Sbjct: 66 KYYGSYL-KGTKLWIIMEYLGGGSALDLL--RAGPFDEFQI---ATMLKEIL---KGLDY 116
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRIT 700
LH E +HRD++A+++LL ++ +V+L V Q D R T
Sbjct: 117 LHSEKK---IHRDIKAANVLLSEQGDVKLADFG-VAGQLTDTQIKRNT 160
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNN 346
+L+ + NN L+ + F + L+++ L N T P+ +P LR LD+S NN
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 347 F 347
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGL 178
+ LP L+ LDL +++ + P + L +L SL LS N L
Sbjct: 21 KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 565 RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYR- 623
R D Q EA LL + + H +V G C E +V++YM +GDL+ L
Sbjct: 51 RQDFQR---EAELLTV-----LQHQHIVRFYGVCTEGR-PLLMVFEYMRHGDLNRFLRSH 101
Query: 624 ----KTNTEDDLQSLDWIT---RLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676
K + + +T L IA A G+ YL +L FVHRD+ + L+
Sbjct: 102 GPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYL---ASLHFVHRDLATRNCLVGQG 158
Query: 677 FEVRLG 682
V++G
Sbjct: 159 LVVKIG 164
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280 |
| >gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 579 ELDFFSKVS-HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDD------- 630
EL+ K+ H ++ LLG C E ++ +Y P G+L L + E D
Sbjct: 52 ELEVLCKLGHHPNIINLLGAC-ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEH 110
Query: 631 --LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
+L L+ A A G+ YL + F+HRD+ A ++L+ + ++
Sbjct: 111 GTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADF 163
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297 |
| >gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 23/155 (14%)
Query: 545 GHSGDLFRGILEGGIPVVIK-----RIDLQSVKTEAYLLE-LDFFSKVSHAR------LV 592
G G ++ GI +G V+K R+ +++V A + E ++F ++ S + +V
Sbjct: 17 GSFGMVYEGIAKG----VVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVV 72
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSL--YRKTNTEDDLQSLDWITRL-KIAIGAAEG 649
LLG + + ++ + M GDL S L R + +Q+ + ++ ++A A+G
Sbjct: 73 RLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG 131
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684
++YL+ FVHRD+ A + ++ + F V++G
Sbjct: 132 MAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 163
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277 |
| >gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSK-VSHARLV 592
D+ + +G GD+++ L G +K I L+ + + + F K H +V
Sbjct: 10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIV 69
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
G + RE + ++ +Y G L +Y T +LQ + ++ R + +GL+Y
Sbjct: 70 AYFGSYLSRE-KLWICMEYCGGGSLQD-IYHVTGPLSELQ-IAYVCRETL-----QGLAY 121
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRLG 682
LH + + HRD++ ++ILL D +V+L
Sbjct: 122 LHSKGKM---HRDIKGANILLTDNGDVKLA 148
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267 |
| >gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 12/77 (15%)
Query: 606 FLVYKYMPNGDLSSSLYRK-TNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+L+ +Y+P GD+ + L +K T TE+ ++ +I +AI + +H L ++HR
Sbjct: 77 YLIMEYLPGGDMMTLLMKKDTFTEE--ETRFYIAETILAIDS------IH---KLGYIHR 125
Query: 665 DVQASSILLDDKFEVRL 681
D++ ++LLD K ++L
Sbjct: 126 DIKPDNLLLDAKGHIKL 142
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364 |
| >gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 20/126 (15%)
Query: 564 KRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYR 623
KRI + ++ A L E KV+ ++ V L + E ++ LV M GDL +Y
Sbjct: 36 KRIKKRKGESMA-LNEKQILEKVN-SQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYN 93
Query: 624 KTNT--EDDLQSLDWITRLKIAIGAAE---GLSYLHHECTLPFVHRDVQASSILLDDKFE 678
N E++ + AAE GL LH E T V+RD++ +ILLDD
Sbjct: 94 MGNPGFEEE----------RALFYAAEILCGLEDLHRENT---VYRDLKPENILLDDYGH 140
Query: 679 VRLGSL 684
+R+ L
Sbjct: 141 IRISDL 146
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285 |
| >gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 570 SVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL--VYKYMPNGDLSSSLYRKTNT 627
S + A E+ + H R+V G C+ E+ L ++MP G +
Sbjct: 45 SKEVNALECEIQLLKNLLHERIVQYYG-CLRDPMERTLSIFMEHMPGGSI---------- 93
Query: 628 EDDLQSLDWITR---LKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS- 683
+D L+S +T K EG+SYLH + VHRD++ ++IL D V+LG
Sbjct: 94 KDQLKSYGALTENVTRKYTRQILEGVSYLH---SNMIVHRDIKGANILRDSVGNVKLGDF 150
Query: 684 -----LSEVCAQG 691
L +C G
Sbjct: 151 GASKRLQTICLSG 163
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 100.0 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 100.0 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 100.0 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 100.0 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 100.0 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 100.0 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 100.0 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 100.0 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 100.0 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 100.0 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 100.0 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 100.0 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 100.0 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 100.0 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 100.0 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 100.0 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 100.0 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 100.0 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 100.0 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 100.0 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 100.0 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 100.0 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 100.0 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 100.0 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 100.0 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 100.0 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 100.0 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 100.0 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 100.0 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 100.0 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 100.0 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 100.0 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 100.0 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 100.0 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 100.0 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 100.0 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 100.0 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 100.0 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 100.0 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 100.0 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 100.0 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 100.0 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 100.0 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 100.0 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 100.0 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 100.0 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 100.0 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 100.0 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 100.0 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 100.0 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 100.0 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 100.0 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 100.0 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 100.0 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 100.0 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 100.0 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 100.0 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 100.0 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 100.0 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 100.0 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 100.0 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 100.0 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 100.0 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 100.0 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 100.0 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 100.0 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 100.0 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 100.0 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 100.0 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 100.0 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 100.0 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 100.0 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 100.0 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 100.0 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 100.0 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 100.0 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 100.0 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 100.0 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 100.0 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 100.0 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 100.0 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 100.0 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 100.0 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 100.0 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 100.0 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 100.0 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 100.0 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 100.0 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 100.0 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 100.0 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 100.0 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 100.0 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 100.0 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 100.0 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 100.0 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 100.0 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 100.0 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 100.0 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 100.0 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 100.0 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 100.0 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 100.0 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 100.0 | |
| PTZ00284 | 467 | protein kinase; Provisional | 100.0 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 100.0 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 100.0 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 100.0 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 100.0 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 100.0 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 100.0 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 100.0 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 100.0 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 100.0 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 100.0 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 100.0 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 100.0 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 100.0 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 100.0 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 100.0 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 100.0 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 100.0 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 100.0 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 100.0 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 100.0 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 100.0 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 100.0 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 100.0 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 100.0 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 100.0 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 100.0 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 100.0 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 100.0 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 100.0 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 100.0 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 100.0 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 100.0 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 100.0 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 100.0 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 100.0 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 100.0 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.98 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.98 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.98 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.98 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.98 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.98 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.98 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.98 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.98 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.98 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.98 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.98 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.98 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.98 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.98 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.98 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.98 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.98 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.98 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.98 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.98 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.98 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.98 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.98 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.98 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.97 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.97 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.97 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.97 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.97 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.97 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.97 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.97 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 99.97 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.97 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.97 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.97 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.97 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.97 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.97 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.97 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.97 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.97 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.97 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.97 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.97 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.97 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.97 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.97 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.97 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.97 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.97 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.97 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.97 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.97 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.97 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.97 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.97 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.97 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.97 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.97 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.97 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.97 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.97 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.97 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.97 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.97 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.97 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.97 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.97 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.97 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.97 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.97 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.97 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.97 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.97 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.97 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.97 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.97 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.97 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.97 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.97 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.97 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.97 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.97 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.97 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.97 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.97 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.97 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.97 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.97 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.97 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.97 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.97 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.97 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.97 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.97 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.97 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.97 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.97 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.97 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.97 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.97 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.97 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.97 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.97 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.97 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.97 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.97 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.97 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.97 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.97 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.97 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.97 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.97 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.97 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.97 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.97 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.97 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.97 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.97 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.97 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.97 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.97 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.97 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.97 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.97 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.97 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 99.97 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.97 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.97 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.97 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.97 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.97 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.97 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.97 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.97 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.97 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.97 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.97 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.97 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.97 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.96 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.96 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.96 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.96 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.96 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.96 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.96 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.96 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 99.96 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.96 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.96 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.96 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.96 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.96 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.96 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.96 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.96 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.96 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.96 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.96 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.96 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.96 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.96 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.96 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.96 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.96 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.96 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.96 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.96 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.96 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.96 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.96 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.96 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 99.96 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.96 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.95 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.95 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 99.95 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 99.95 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 99.95 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.94 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 99.93 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.93 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.92 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 99.92 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.92 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 99.91 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 99.91 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.9 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.9 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.89 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.88 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.85 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 99.85 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.84 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 99.83 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 99.83 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 99.81 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.81 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 99.8 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.8 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 99.78 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.78 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.78 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.77 | |
| smart00090 | 237 | RIO RIO-like kinase. | 99.77 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 99.75 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 99.74 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 99.74 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 99.73 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.73 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 99.73 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.72 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.72 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 99.71 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 99.71 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.68 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 99.67 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.66 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.65 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 99.64 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 99.63 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 99.61 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 99.6 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 99.57 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 99.52 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 99.51 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 99.5 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 99.47 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.41 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 99.35 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.35 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 99.33 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.3 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.28 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 99.18 | |
| cd05146 | 197 | RIO3_euk RIO kinase family; eukaryotic RIO3, catal | 99.12 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 99.07 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 99.06 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 99.03 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.01 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.98 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.97 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 98.95 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.92 | |
| COG3642 | 204 | Mn2+-dependent serine/threonine protein kinase [Si | 98.92 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.92 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.89 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 98.88 | |
| KOG3087 | 229 | consensus Serine/threonine protein kinase [General | 98.85 | |
| PRK15123 | 268 | lipopolysaccharide core heptose(I) kinase RfaP; Pr | 98.79 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.77 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.74 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.72 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.7 | |
| PF01163 | 188 | RIO1: RIO1 family; InterPro: IPR018934 Protein pho | 98.69 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.68 | |
| KOG3741 | 655 | consensus Poly(A) ribonuclease subunit [RNA proces | 98.62 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.6 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 98.52 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.48 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.48 | |
| COG0478 | 304 | RIO-like serine/threonine protein kinase fused to | 98.44 | |
| PF06293 | 206 | Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; | 98.37 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.36 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.34 | |
| TIGR02172 | 226 | Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou | 98.3 | |
| COG0661 | 517 | AarF Predicted unusual protein kinase [General fun | 98.28 | |
| PRK09902 | 216 | hypothetical protein; Provisional | 98.26 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 98.22 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-78 Score=745.62 Aligned_cols=198 Identities=28% Similarity=0.423 Sum_probs=165.0
Q ss_pred cccHHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 523 SFTYQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 523 ~~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
.++++++.. .|...++||+|+||.||+|+. .+|+.||||+++..... ..+|++++++++|||||+++|+|.+
T Consensus 682 ~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~l~~l~HpnIv~~~~~~~~- 754 (968)
T PLN00113 682 SITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI---PSSEIADMGKLQHPNIVKLIGLCRS- 754 (968)
T ss_pred hhhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc---cHHHHHHHhhCCCCCcceEEEEEEc-
Confidence 355666543 577888999999999999995 67999999998643322 2356889999999999999998876
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
++..|+|||||++|+|.++++ .++|.++.+|+.|||+||+|||+++.++|+||||||+||+++.++.+|+
T Consensus 755 ~~~~~lv~Ey~~~g~L~~~l~----------~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~ 824 (968)
T PLN00113 755 EKGAYLIHEYIEGKNLSEVLR----------NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL 824 (968)
T ss_pred CCCCEEEEeCCCCCcHHHHHh----------cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEE
Confidence 567899999999999999995 2899999999999999999999877789999999999999999999888
Q ss_pred ccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 682 GSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. ||.+...... ....+|..|+|||...... +++|+|||||||++|||+||+.||+.
T Consensus 825 ~-~~~~~~~~~~-~~~~~t~~y~aPE~~~~~~---------~~~~sDv~S~Gvvl~el~tg~~p~~~ 880 (968)
T PLN00113 825 R-LSLPGLLCTD-TKCFISSAYVAPETRETKD---------ITEKSDIYGFGLILIELLTGKSPADA 880 (968)
T ss_pred E-eccccccccC-CCccccccccCcccccCCC---------CCcccchhhHHHHHHHHHhCCCCCCc
Confidence 5 6665443222 2235788999999876543 57899999999999999999999854
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=428.64 Aligned_cols=216 Identities=38% Similarity=0.635 Sum_probs=193.4
Q ss_pred CccccHHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEE
Q 004248 521 GESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCM 599 (766)
Q Consensus 521 ~~~~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~ 599 (766)
...|+++|+.+||++|+..++||+|+||.||+|.+++|+.||||++...... .++|.+|++++.+++|||+|+|+|||.
T Consensus 62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~ 141 (361)
T KOG1187|consen 62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCL 141 (361)
T ss_pred cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEe
Confidence 4579999999999999999999999999999999999999999999776654 567999999999999999999999999
Q ss_pred ecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 600 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
+.+++.+||||||++|+|.++|+..... .++|.+|++||.++|+||+|||+.+.|+||||||||+|||||+++++
T Consensus 142 e~~~~~~LVYEym~nGsL~d~L~~~~~~-----~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~a 216 (361)
T KOG1187|consen 142 EGGEHRLLVYEYMPNGSLEDHLHGKKGE-----PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNA 216 (361)
T ss_pred cCCceEEEEEEccCCCCHHHHhCCCCCC-----CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCE
Confidence 7432599999999999999999875431 68999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhcCC-CCccc---eeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 680 RLGSLSEVCAQGG-DAHQS---RITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 680 kl~DFG~a~~~~~-~~~~~---~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
||+|||+|+.... ..+.. .||..|.|||....+. +|+|+|||||||+++|++||++|.+...
T Consensus 217 KlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~---------lt~KsDVySFGVvllElitgr~~~d~~~ 282 (361)
T KOG1187|consen 217 KLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGK---------LTEKSDVYSFGVVLLELITGRKAVDQSR 282 (361)
T ss_pred EccCccCcccCCccccceeeecCCCCccCChhhhccCC---------cCcccccccchHHHHHHHhCCcccCCCC
Confidence 9999999977654 33322 7899999999886543 6899999999999999999999987554
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=380.53 Aligned_cols=199 Identities=21% Similarity=0.288 Sum_probs=175.3
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
..++|...+.||+|+||+||+|+ .+++..||||++.+.... .+-...|+++|++++|||||++++++.. ++.+|+
T Consensus 8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~-~~~i~l 86 (429)
T KOG0595|consen 8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIED-DDFIYL 86 (429)
T ss_pred ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEec-CCeEEE
Confidence 34678888899999999999999 567899999999776422 5667899999999999999999996655 678999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC------CcEEe
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK------FEVRL 681 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~------~~~kl 681 (766)
|||||.||||.++|++++. +++.+.+.++.|+|.||++||++ +||||||||.||||+.. -.+||
T Consensus 87 VMEyC~gGDLs~yi~~~~~-------l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKI 156 (429)
T KOG0595|consen 87 VMEYCNGGDLSDYIRRRGR-------LPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKI 156 (429)
T ss_pred EEEeCCCCCHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEe
Confidence 9999999999999998764 99999999999999999999998 99999999999999865 35899
Q ss_pred ccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 682 GSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 682 ~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+|||+||.... ...+.+|++.|||||++.... |+.|+|+||.|+|+|||++|+.||+...
T Consensus 157 ADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~---------YdAKADLWSiG~Ilyq~l~g~~Pf~a~t 218 (429)
T KOG0595|consen 157 ADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQ---------YDAKADLWSIGTILYQCLTGKPPFDAET 218 (429)
T ss_pred cccchhhhCCchhHHHHhhCCccccCHHHHHhcc---------ccchhhHHHHHHHHHHHHhCCCCccccC
Confidence 99999998843 356789999999999987555 5789999999999999999999997443
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=376.36 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=186.3
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~l 607 (766)
.+.|+.+++||+|.||.||||+ ..+|+.||+|+++.+..+ ..-..|||.||++++|||||+|.+...+. ...+||
T Consensus 116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl 195 (560)
T KOG0600|consen 116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL 195 (560)
T ss_pred hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence 3457788999999999999999 788999999999876543 34568999999999999999999988775 357999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|+|||+. ||..++...+ ..|++.+++.|+.|++.||+|+|++ +|+|||||.+|||||.+|.+||+|||+|
T Consensus 196 VFeYMdh-DL~GLl~~p~------vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLA 265 (560)
T KOG0600|consen 196 VFEYMDH-DLSGLLSSPG------VKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLA 265 (560)
T ss_pred EEecccc-hhhhhhcCCC------cccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccce
Confidence 9999997 9999886533 3599999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCC----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEE
Q 004248 688 CAQGG----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLC 763 (766)
Q Consensus 688 ~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~ 763 (766)
+.+.. ..+..+.|.||+|||.+.+.+. |+.++|+||.|||+.||++|| |...++.+.+|+..|.|+|
T Consensus 266 r~y~~~~~~~~T~rVvTLWYRpPELLLG~t~--------Yg~aVDlWS~GCIl~El~~gk-PI~~G~tEveQl~kIfklc 336 (560)
T KOG0600|consen 266 RFYTPSGSAPYTSRVVTLWYRPPELLLGATS--------YGTAVDLWSVGCILAELFLGK-PILQGRTEVEQLHKIFKLC 336 (560)
T ss_pred eeccCCCCcccccceEEeeccChHHhcCCcc--------cccceeehhhhHHHHHHHcCC-CCcCCccHHHHHHHHHHHh
Confidence 97632 3567789999999999887664 688999999999999999999 5557788888999888887
Q ss_pred e
Q 004248 764 V 764 (766)
Q Consensus 764 ~ 764 (766)
.
T Consensus 337 G 337 (560)
T KOG0600|consen 337 G 337 (560)
T ss_pred C
Confidence 4
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=358.14 Aligned_cols=195 Identities=22% Similarity=0.243 Sum_probs=171.8
Q ss_pred CccceeecCCcceEEEEE-EcCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 537 SDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+..+.||+|..|+|||++ ..+++.+|+|.+..... .++++.+|++++++.+||+||++||.|+...++++++||||+
T Consensus 82 e~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMD 161 (364)
T KOG0581|consen 82 ERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMD 161 (364)
T ss_pred hhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcC
Confidence 346799999999999999 56899999999954332 267899999999999999999999988764325999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc-CC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ-GG 692 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~-~~ 692 (766)
+|+|++++.+.+. +++...-+|+.+|++||.|||+. .+||||||||+|||++..|++||||||.++.+ ..
T Consensus 162 gGSLd~~~k~~g~-------i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS 232 (364)
T KOG0581|consen 162 GGSLDDILKRVGR-------IPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS 232 (364)
T ss_pred CCCHHHHHhhcCC-------CCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccHHhhhh
Confidence 9999999976543 89999999999999999999963 39999999999999999999999999999876 44
Q ss_pred CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
...+.+||..|||||.+.+..| +.++||||||++++|+++|+.|+...
T Consensus 233 ~a~tfvGT~~YMsPERi~g~~Y---------s~~sDIWSLGLsllE~a~GrfP~~~~ 280 (364)
T KOG0581|consen 233 IANTFVGTSAYMSPERISGESY---------SVKSDIWSLGLSLLELAIGRFPYPPP 280 (364)
T ss_pred hcccccccccccChhhhcCCcC---------CcccceecccHHHHHHhhCCCCCCCc
Confidence 5678899999999999987764 67899999999999999999999654
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=358.91 Aligned_cols=198 Identities=19% Similarity=0.236 Sum_probs=175.5
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..++||+|+||+||.++ .++++.+|+|.+++...- .+...+|..+|.+++||+||+++.. +++++.+|+
T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ys-FQt~~kLyl 102 (357)
T KOG0598|consen 24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYS-FQTEEKLYL 102 (357)
T ss_pred hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEe-cccCCeEEE
Confidence 4679999999999999999998 567999999999765432 4578899999999999999999964 455778999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|+||+.||+|..+|.+.+. +++.....++.+|+.||.|||+. +||||||||+|||||++|+++|+|||++
T Consensus 103 Vld~~~GGeLf~hL~~eg~-------F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~ 172 (357)
T KOG0598|consen 103 VLDYLNGGELFYHLQREGR-------FSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLC 172 (357)
T ss_pred EEeccCCccHHHHHHhcCC-------cchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccc
Confidence 9999999999999986654 89999999999999999999998 9999999999999999999999999999
Q ss_pred hhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 688 CAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 688 ~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+.. +....+.+||+.|||||++.... ++..+|+||+||++|||+||.+||...+
T Consensus 173 k~~~~~~~~t~tfcGT~eYmAPEil~~~g---------y~~~vDWWsLGillYeML~G~pPF~~~~ 229 (357)
T KOG0598|consen 173 KEDLKDGDATRTFCGTPEYMAPEILLGKG---------YDKAVDWWSLGILLYEMLTGKPPFYAED 229 (357)
T ss_pred hhcccCCCccccccCCccccChHHHhcCC---------CCcccchHhHHHHHHHHhhCCCCCcCcc
Confidence 854 34456679999999999987764 4779999999999999999999996554
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=344.20 Aligned_cols=208 Identities=18% Similarity=0.208 Sum_probs=175.3
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+.|+...++|+|+||+|||++ .++|+.||||++..+... .+-.+||+++|++++|||+|.++.+|.. ...++||+
T Consensus 2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrr-krklhLVF 80 (396)
T KOG0593|consen 2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRR-KRKLHLVF 80 (396)
T ss_pred cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-cceeEEEe
Confidence 357778899999999999999 678999999999655432 4567899999999999999999998876 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||+. ++.+-|.+... .++....++|+.|+++|+.|+|++ ++|||||||+||||+.++.+|+||||+|+.
T Consensus 81 E~~dh-TvL~eLe~~p~------G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~ 150 (396)
T KOG0593|consen 81 EYCDH-TVLHELERYPN------GVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFART 150 (396)
T ss_pred eecch-HHHHHHHhccC------CCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHh
Confidence 99997 55555544432 388899999999999999999998 999999999999999999999999999998
Q ss_pred cC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEE
Q 004248 690 QG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIK 761 (766)
Q Consensus 690 ~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~ 761 (766)
.. +..+.++.|+||+|||.+.+.+. |+..+||||+||++.||+||. |..++++..+|+-.|.+
T Consensus 151 L~~pgd~YTDYVATRWYRaPELLvGDtq--------YG~pVDiWAiGCv~aEl~~G~-pL~PG~SDiDQLy~I~k 216 (396)
T KOG0593|consen 151 LSAPGDNYTDYVATRWYRAPELLVGDTQ--------YGKPVDIWAIGCVFAELLTGE-PLWPGRSDIDQLYLIRK 216 (396)
T ss_pred hcCCcchhhhhhhhhhccChhhhcccCc--------CCCcccchhhhHHHHHHhcCC-cCCCCcchHHHHHHHHH
Confidence 74 34567889999999999877442 567889999999999999999 56667776666655543
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=355.08 Aligned_cols=199 Identities=17% Similarity=0.199 Sum_probs=172.1
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--------HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--------TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
+.|...+.+|+|+||.|-+|+ ..+|+.||||.+.++... .....+|+++|++++|||||++++++.. ++.
T Consensus 172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~-~ds 250 (475)
T KOG0615|consen 172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEV-PDS 250 (475)
T ss_pred ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeec-CCc
Confidence 446778999999999999998 678999999999764322 2245799999999999999999997765 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEEe
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVRL 681 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl 681 (766)
.|+|||||+||+|.+.+-.++. +.+..-+.++.|++.|+.|||+. +|+||||||+|||+..+ ..+||
T Consensus 251 ~YmVlE~v~GGeLfd~vv~nk~-------l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKI 320 (475)
T KOG0615|consen 251 SYMVLEYVEGGELFDKVVANKY-------LREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKI 320 (475)
T ss_pred eEEEEEEecCccHHHHHHhccc-------cccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEe
Confidence 8999999999999999976654 77778889999999999999998 99999999999999866 77999
Q ss_pred ccchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||+|+..+ .-..+.|||+.|.|||++....+.+ +..|+|+||+|||||-+++|.+||...
T Consensus 321 tDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~------~~~kVDiWSlGcvLfvcLsG~pPFS~~ 384 (475)
T KOG0615|consen 321 TDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEY------YPSKVDIWSLGCVLFVCLSGYPPFSEE 384 (475)
T ss_pred cccchhhccccceehhhhcCCccccChhheecCCeec------ccchheeeeccceEEEEeccCCCcccc
Confidence 9999999884 3467889999999999987665443 456999999999999999999999533
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=367.99 Aligned_cols=211 Identities=18% Similarity=0.252 Sum_probs=187.3
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHH--HHHHHHHhhcC-CCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAY--LLELDFFSKVS-HARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~--~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|...+++|.|.||.||+|+ ..+|..||||+++..-...++. +||++.|++++ |||||++.+++.+.+..+|+||
T Consensus 10 ~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVf 89 (538)
T KOG0661|consen 10 DRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVF 89 (538)
T ss_pred HHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeH
Confidence 457778999999999999999 6789999999997665554443 68999999998 9999999999888655899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||+. +|++++..++ ..+++.++..|+.||.+||+|+|.+ ++.|||+||+|||+.....+||+|||+||.
T Consensus 90 E~Md~-NLYqLmK~R~------r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARe 159 (538)
T KOG0661|consen 90 EFMDC-NLYQLMKDRN------RLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLARE 159 (538)
T ss_pred Hhhhh-hHHHHHhhcC------CcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccc
Confidence 99985 9999998664 4699999999999999999999998 999999999999999999999999999998
Q ss_pred cC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEEecC
Q 004248 690 QG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLCVLL 766 (766)
Q Consensus 690 ~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 766 (766)
+. .+.+.++.|+||+|||++....+ |+.++|+||+|||++|+++-++-| ++..+.++|.|||.+|
T Consensus 160 v~SkpPYTeYVSTRWYRAPEvLLrs~~--------Ys~pvD~wA~GcI~aEl~sLrPLF----PG~sE~Dqi~KIc~VL 226 (538)
T KOG0661|consen 160 VRSKPPYTEYVSTRWYRAPEVLLRSGY--------YSSPVDMWAVGCIMAELYSLRPLF----PGASEIDQIYKICEVL 226 (538)
T ss_pred cccCCCcchhhhcccccchHHhhhccc--------cCCchHHHHHHHHHHHHHHhcccC----CCCcHHHHHHHHHHHh
Confidence 84 45788999999999999876654 789999999999999999999766 7778888888888775
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=345.43 Aligned_cols=213 Identities=20% Similarity=0.266 Sum_probs=183.9
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~ 606 (766)
..++|+..+.|++|+||.||+|+ .++++.||+|+++....+ .-.-+|||.+|.+++|||||.+..+..... +.+|
T Consensus 74 sv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy 153 (419)
T KOG0663|consen 74 SVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIY 153 (419)
T ss_pred cHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceee
Confidence 34568889999999999999999 567999999999876533 235689999999999999999999776532 4699
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|||||+. ||.++++..+ +++...+.+.++.|+++|++|||++ -|+|||||++|+|++..|.+||+|||+
T Consensus 154 ~VMe~~Eh-DLksl~d~m~------q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGL 223 (419)
T KOG0663|consen 154 IVMEYVEH-DLKSLMETMK------QPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGL 223 (419)
T ss_pred eeHHHHHh-hHHHHHHhcc------CCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccch
Confidence 99999996 9999998654 4589999999999999999999998 899999999999999999999999999
Q ss_pred hhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEE
Q 004248 687 VCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLC 763 (766)
Q Consensus 687 a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~ 763 (766)
||.++.. .+..+.|.||+|||.+.+... |++.+|+||+|||+.||++++ |.+++..+.+|++.|.+++
T Consensus 224 AR~ygsp~k~~T~lVVTLWYRaPELLLG~~t--------yst~iDMWSvGCI~aE~l~~k-Plf~G~sE~dQl~~If~ll 294 (419)
T KOG0663|consen 224 AREYGSPLKPYTPLVVTLWYRAPELLLGAKT--------YSTAVDMWSVGCIFAELLTQK-PLFPGKSEIDQLDKIFKLL 294 (419)
T ss_pred hhhhcCCcccCcceEEEeeecCHHHhcCCcc--------cCcchhhhhHHHHHHHHHhcC-CCCCCCchHHHHHHHHHHh
Confidence 9998765 677789999999998876543 689999999999999999999 5566777777777776554
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=363.44 Aligned_cols=198 Identities=23% Similarity=0.343 Sum_probs=170.6
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCC
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
.+.+|+|+||+||+|.+.+...||||++...... .++|.+|+.+|.+++|||||+++|+|.+......+|||||++|
T Consensus 46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~G 125 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGG 125 (362)
T ss_pred hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCC
Confidence 4559999999999999987767999999765433 4589999999999999999999999986433689999999999
Q ss_pred ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC-eEecCCCCCCeeeCCCC-cEEeccchhhhhcC--
Q 004248 616 DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP-FVHRDVQASSILLDDKF-EVRLGSLSEVCAQG-- 691 (766)
Q Consensus 616 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-iiHrDlKp~NILl~~~~-~~kl~DFG~a~~~~-- 691 (766)
+|.+++++... ..++|..++.+|.|||+||.|||++ + ||||||||+|||++.++ ++||+|||+++...
T Consensus 126 sL~~~l~~~~~-----~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~ 197 (362)
T KOG0192|consen 126 SLSVLLHKKRK-----RKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVIS 197 (362)
T ss_pred cHHHHHhhccc-----CCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeeccc
Confidence 99999987411 3599999999999999999999998 5 99999999999999997 99999999998764
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
...+...||..|||||++... .. .+++|+|||||||++|||+||+.||.....
T Consensus 198 ~~~~~~~~GT~~wMAPEv~~~~-~~------~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~ 251 (362)
T KOG0192|consen 198 KTSMTSVAGTYRWMAPEVLRGE-KS------PYTEKSDVYSFGIVLWELLTGEIPFEDLAP 251 (362)
T ss_pred cccccCCCCCccccChhhhcCC-CC------cCCccchhhhHHHHHHHHHHCCCCCCCCCH
Confidence 334446899999999998754 11 169999999999999999999999965443
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=332.74 Aligned_cols=208 Identities=19% Similarity=0.303 Sum_probs=180.1
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|...+++|+|.||.||+|+ ..+|+.||||+++....+ .....||++.|+.++|||||.+++++-. .+.+-+|+
T Consensus 2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~-~~~l~lVf 80 (318)
T KOG0659|consen 2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPH-KSNLSLVF 80 (318)
T ss_pred chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccC-CCceEEEE
Confidence 357788999999999999999 678999999999876544 4578999999999999999999996654 56799999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||+. ||+.+|+.+. ..++-.+.+.++.++.+|++|||++ .|+||||||.|+|++++|.+||+|||+|+.
T Consensus 81 Efm~t-dLe~vIkd~~------i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~ 150 (318)
T KOG0659|consen 81 EFMPT-DLEVVIKDKN------IILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARF 150 (318)
T ss_pred Eeccc-cHHHHhcccc------cccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhc
Confidence 99996 9999997544 3689999999999999999999998 899999999999999999999999999998
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEE
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIK 761 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~ 761 (766)
.+.+ .+..+.|+||+|||.+.+... |+..+|+||.|||+.||+-|. ||++++...+|+..|.+
T Consensus 151 f~~p~~~~~~~V~TRWYRAPELLfGsr~--------Yg~~VDmWavGCI~AELllr~-P~fpG~sDidQL~~If~ 216 (318)
T KOG0659|consen 151 FGSPNRIQTHQVVTRWYRAPELLFGSRQ--------YGTGVDMWAVGCIFAELLLRV-PFFPGDSDIDQLSKIFR 216 (318)
T ss_pred cCCCCcccccceeeeeccChHHhccchh--------cCCcchhhhHHHHHHHHHccC-CCCCCCchHHHHHHHHH
Confidence 8543 334478999999998876543 577899999999999999977 88877777777666544
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=341.37 Aligned_cols=202 Identities=19% Similarity=0.234 Sum_probs=174.0
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCc-EEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENE-KFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~-~~lV~ 609 (766)
+|.+.++||+|+||+|||+. +.+|..||.|.+.-+... ++....|+.+|++++|||||+.+++-+..+++ +++||
T Consensus 20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm 99 (375)
T KOG0591|consen 20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM 99 (375)
T ss_pred HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence 46778899999999999998 789999999999754433 56789999999999999999999855443455 89999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC--eEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP--FVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|||.+|||...|...+. ....+++...++++.|+++||.++|... ++ |+||||||.||+|+.+|.+|++|||++
T Consensus 100 E~c~~GDLsqmIk~~K~---qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~ 175 (375)
T KOG0591|consen 100 ELCDAGDLSQMIKHFKK---QKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLG 175 (375)
T ss_pred HhhcccCHHHHHHHHHh---ccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhH
Confidence 99999999999975332 2246999999999999999999999832 35 899999999999999999999999999
Q ss_pred hhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+....+ +++.+||++||+||.+.... |+.|+||||+||++|||+.-++||...
T Consensus 176 r~l~s~~tfA~S~VGTPyYMSPE~i~~~~---------Y~~kSDiWslGCllyEMcaL~~PF~g~ 231 (375)
T KOG0591|consen 176 RFLSSKTTFAHSLVGTPYYMSPERIHESG---------YNFKSDIWSLGCLLYEMCALQSPFYGD 231 (375)
T ss_pred hHhcchhHHHHhhcCCCcccCHHHHhcCC---------CCcchhHHHHHHHHHHHHhcCCCcccc
Confidence 988654 45679999999999886554 478999999999999999999999544
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=361.03 Aligned_cols=196 Identities=16% Similarity=0.249 Sum_probs=176.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
..|...+.||+|+|+.||+++. .+|..||+|.+.+.. ..++...+||+|.++|+|||||+++++|.+ .+.+|+|
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FED-s~nVYiv 96 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFED-SNNVYIV 96 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeec-CCceEEE
Confidence 5688999999999999999995 899999999998743 337789999999999999999999996654 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
.|+|++|+|.+++.+++ ++++.+...+..||+.||.|||+. +|||||||-.|+++++++++||+|||+|.
T Consensus 97 LELC~~~sL~el~Krrk-------~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt 166 (592)
T KOG0575|consen 97 LELCHRGSLMELLKRRK-------PLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLAT 166 (592)
T ss_pred EEecCCccHHHHHHhcC-------CCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceee
Confidence 99999999999997543 499999999999999999999998 99999999999999999999999999998
Q ss_pred hcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+. +...+.+||+.|.|||+.....+ +..+||||+|||||-|++|++||...
T Consensus 167 ~le~~~Erk~TlCGTPNYIAPEVl~k~gH---------sfEvDiWSlGcvmYtLL~G~PPFetk 221 (592)
T KOG0575|consen 167 QLEYDGERKKTLCGTPNYIAPEVLNKSGH---------SFEVDIWSLGCVMYTLLVGRPPFETK 221 (592)
T ss_pred eecCcccccceecCCCcccChhHhccCCC---------CCchhhhhhhhHHHhhhhCCCCcccc
Confidence 774 44667899999999999875554 57889999999999999999999654
|
|
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=347.41 Aligned_cols=210 Identities=22% Similarity=0.269 Sum_probs=175.3
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecC-C---cEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERE-N---EKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~---~~~lV~ 609 (766)
.|...+++|.|+||.||+|++ ++++.||||++-.+..-. -+|+++|++++|||||+|..+|.... + ...+||
T Consensus 25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~k---nrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVl 101 (364)
T KOG0658|consen 25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYK---NRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVL 101 (364)
T ss_pred EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcC---cHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHH
Confidence 356679999999999999994 568999999986544322 26999999999999999998776432 2 245899
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFG~a~ 688 (766)
||||. +|.++++.... ..+.++...++-++.|+.+||+|||+. +|+||||||.|+|+|.+ |.+||||||.|+
T Consensus 102 eymP~-tL~~~~r~~~~---~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK 174 (364)
T KOG0658|consen 102 EYMPE-TLYRVIRHYTR---ANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAK 174 (364)
T ss_pred HhchH-HHHHHHHHHhh---cCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcce
Confidence 99996 99999975311 123478888899999999999999997 99999999999999976 999999999999
Q ss_pred hc--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEE
Q 004248 689 AQ--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLC 763 (766)
Q Consensus 689 ~~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~ 763 (766)
.. +.+..++..|++|+|||.+.+.+. ||.+.||||.|||+.||+-|+ |.++++.+.+|+..|.|++
T Consensus 175 ~L~~~epniSYicSRyYRaPELifga~~--------Yt~~IDiWSaGCV~aELl~g~-plFpG~s~~dQL~eIik~l 242 (364)
T KOG0658|consen 175 VLVKGEPNISYICSRYYRAPELIFGATE--------YTTSIDIWSAGCVMAELLKGQ-PLFPGDSSVDQLVEIIKVL 242 (364)
T ss_pred eeccCCCceeEEEeccccCHHHHcCccc--------cCceeEEhhhhHHHHHHhcCC-cccCCCCHHHHHHHHHHHh
Confidence 87 455677889999999999877654 799999999999999999999 5667788888888887765
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=329.82 Aligned_cols=198 Identities=20% Similarity=0.223 Sum_probs=179.0
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.+|.|+||.|..++ ..+|..+|+|.++.... +.+...+|..+|+.+.||++|++++.|.+ .+.+|+|
T Consensus 44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d-~~~lymv 122 (355)
T KOG0616|consen 44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD-NSNLYMV 122 (355)
T ss_pred hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc-CCeEEEE
Confidence 467888999999999999998 56789999999977553 24578899999999999999999987766 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||++||.|.+++++.++ +++.....||.||+.||+|||+. .|++||+||+|||||.+|.+||+|||+|+
T Consensus 123 meyv~GGElFS~Lrk~~r-------F~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK 192 (355)
T KOG0616|consen 123 MEYVPGGELFSYLRKSGR-------FSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAK 192 (355)
T ss_pred EeccCCccHHHHHHhcCC-------CCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceE
Confidence 999999999999987654 99999999999999999999998 99999999999999999999999999999
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
...+.+.+-|||+.|.|||++....+| .++|+|||||++|||+.|.+||...+.
T Consensus 193 ~v~~rT~TlCGTPeYLAPEii~sk~yn---------kavDWWalGVLIYEMlaG~pPF~~~~~ 246 (355)
T KOG0616|consen 193 RVSGRTWTLCGTPEYLAPEIIQSKGYN---------KAVDWWALGVLIYEMLAGYPPFYDDNP 246 (355)
T ss_pred EecCcEEEecCCccccChHHhhcCCCC---------cchhHHHHHHHHHHHHcCCCCCcCCCh
Confidence 998888889999999999999877754 578999999999999999999976554
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=344.92 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=172.7
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|...++||+|+||.||||+ ..+.+.||+|.+.+.... .+..++|++|+++++|||||.++++|.. ..++++|.
T Consensus 2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt-~~~~~vVt 80 (808)
T KOG0597|consen 2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFET-SAHLWVVT 80 (808)
T ss_pred cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcc-cceEEEEe
Confidence 468888999999999999998 557899999999765443 3468899999999999999999996654 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||.| +|+++|...+. +++++...|+.+++.||.|||+. +|+|||+||.|||++..|.+|+||||+|+.
T Consensus 81 e~a~g-~L~~il~~d~~-------lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~ 149 (808)
T KOG0597|consen 81 EYAVG-DLFTILEQDGK-------LPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARA 149 (808)
T ss_pred hhhhh-hHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhh
Confidence 99986 99999986654 99999999999999999999998 999999999999999999999999999998
Q ss_pred cCCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
..... +...||+.|||||...... |+..+|.||+|||+|||++|++||+..+
T Consensus 150 m~~~t~vltsikGtPlYmAPElv~e~p---------yd~~sDlWslGcilYE~~~G~PPF~a~s 204 (808)
T KOG0597|consen 150 MSTNTSVLTSIKGTPLYMAPELVEEQP---------YDHTSDLWSLGCILYELYVGQPPFYARS 204 (808)
T ss_pred cccCceeeeeccCcccccCHHHHcCCC---------ccchhhHHHHHHHHHHHhcCCCCchHHH
Confidence 75432 3457999999999988655 4678999999999999999999996544
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=344.09 Aligned_cols=193 Identities=25% Similarity=0.412 Sum_probs=168.6
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
...+.||+|-||+||.|.+.....||||.++......++|.+|+++|++++|+|||+++|+|.. ++.+|||||||+.|+
T Consensus 209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~-~~piyIVtE~m~~Gs 287 (468)
T KOG0197|consen 209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTK-QEPIYIVTEYMPKGS 287 (468)
T ss_pred HHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEec-CCceEEEEEecccCc
Confidence 3468899999999999999988899999999887778999999999999999999999999986 457999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCc-
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH- 695 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~- 695 (766)
|.++|+...+ ..+.-.+.+.++.|||+||+||+++ ++|||||.++|||++++..+||+|||+||...++..
T Consensus 288 Ll~yLr~~~~-----~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~ 359 (468)
T KOG0197|consen 288 LLDYLRTREG-----GLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYT 359 (468)
T ss_pred HHHHhhhcCC-----CccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCcee
Confidence 9999986332 4588999999999999999999998 999999999999999999999999999996644322
Q ss_pred ccee---eecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 696 QSRI---TRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 696 ~~~~---t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
...+ -.-+.|||.+..+. ++.|||||||||+|+||+| |+.|+.
T Consensus 360 ~~~~~kfPIkWtAPEa~~~~~---------FS~kSDVWSFGVlL~E~fT~G~~py~ 406 (468)
T KOG0197|consen 360 ASEGGKFPIKWTAPEALNYGK---------FSSKSDVWSFGVLLWELFTYGRVPYP 406 (468)
T ss_pred ecCCCCCCceecCHHHHhhCC---------cccccceeehhhhHHHHhccCCCCCC
Confidence 2222 22467999886554 6899999999999999999 888873
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=338.31 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=174.4
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
..+||+...+||+|+||.||.|+ ..+|..+|+|++++...- .+..+.|-.+|....+|+||+|+..| ++.+.+|
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsF-QD~~~LY 217 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSF-QDKEYLY 217 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEe-cCCCeeE
Confidence 56789999999999999999998 677999999999876542 46788999999999999999999655 4467899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
|||||+||||+..+|.+.+. |++.....|+.+++.|++-+|.. ++|||||||+|+|||..|++||+|||+
T Consensus 218 LiMEylPGGD~mTLL~~~~~-------L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGL 287 (550)
T KOG0605|consen 218 LIMEYLPGGDMMTLLMRKDT-------LTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGL 287 (550)
T ss_pred EEEEecCCccHHHHHHhcCc-------CchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccc
Confidence 99999999999999987654 89999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCC-------------------------C-----C--------------------ccceeeecccCCCCCCCCceee
Q 004248 687 VCAQGG-------------------------D-----A--------------------HQSRITRLLRLPQSSEQGSSGM 716 (766)
Q Consensus 687 a~~~~~-------------------------~-----~--------------------~~~~~t~~y~aPe~~~~~~~g~ 716 (766)
+..... . . ...+||+-|+|||++.+..|
T Consensus 288 s~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY-- 365 (550)
T KOG0605|consen 288 STGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGY-- 365 (550)
T ss_pred cchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCC--
Confidence 852200 0 0 02478999999999987664
Q ss_pred eeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 717 VIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 717 ~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
+..+|+||+|||+|||+.|.+||.+.++.
T Consensus 366 -------~~~cDwWSLG~ImyEmLvGyPPF~s~tp~ 394 (550)
T KOG0605|consen 366 -------GKECDWWSLGCIMYEMLVGYPPFCSETPQ 394 (550)
T ss_pred -------CccccHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 57899999999999999999999766554
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=326.24 Aligned_cols=214 Identities=19% Similarity=0.258 Sum_probs=178.9
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCC-cccceeEEEecCC-----
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHAR-LVPLLGHCMEREN----- 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~n-iv~l~~~~~~~~~----- 603 (766)
..|+..++||+|+||+||+|+ ..+|+.||+|+++..... .....||+.++++++|+| ||++++++...+.
T Consensus 11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~ 90 (323)
T KOG0594|consen 11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG 90 (323)
T ss_pred HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence 346667889999999999999 678999999999876542 445789999999999999 9999998876432
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++|+||++. ||.+++....... ..++-..++.++.|+++||+|||++ +|+||||||.||||+++|.+||+|
T Consensus 91 ~l~lvfe~~d~-DL~~ymd~~~~~~---~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaD 163 (323)
T KOG0594|consen 91 KLYLVFEFLDR-DLKKYMDSLPKKP---QGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLAD 163 (323)
T ss_pred eEEEEEEeecc-cHHHHHHhccccc---cCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeec
Confidence 78999999986 9999997654211 2466788999999999999999998 999999999999999999999999
Q ss_pred chhhhhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeE
Q 004248 684 LSEVCAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTII 760 (766)
Q Consensus 684 FG~a~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~ 760 (766)
||+|+... ...+..++|.+|+|||++.+.+. |++..||||+|||++||++++ |.+++....+|+..|.
T Consensus 164 FGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~--------Ys~~vDiWs~GcIfaEm~~~~-~LFpG~se~~ql~~If 234 (323)
T KOG0594|consen 164 FGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTS--------YSTSVDIWSLGCIFAEMFTRR-PLFPGDSEIDQLFRIF 234 (323)
T ss_pred cchHHHhcCCcccccccEEEeeccCHHHhcCCCc--------CCCCcchHhHHHHHHHHHhCC-CCCCCCcHHHHHHHHH
Confidence 99999764 23566789999999999877654 688999999999999999977 5556666666666665
Q ss_pred EEE
Q 004248 761 KLC 763 (766)
Q Consensus 761 ~~~ 763 (766)
+++
T Consensus 235 ~~l 237 (323)
T KOG0594|consen 235 RLL 237 (323)
T ss_pred HHc
Confidence 443
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=338.67 Aligned_cols=198 Identities=18% Similarity=0.233 Sum_probs=171.5
Q ss_pred HHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
+..+||...+.||+|+|++||+|+ ..+++.+|||++.++..- .+-..+|-++|.+| .||.||+|+..|.+ +..
T Consensus 70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD-~~s 148 (604)
T KOG0592|consen 70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQD-EES 148 (604)
T ss_pred CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeec-ccc
Confidence 345678889999999999999998 678999999999765432 33467799999999 89999999975544 668
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
+|+|+||+++|+|.++|++.+. +++.....+|.+|+.||+|||++ +||||||||+|||+|+||++||+||
T Consensus 149 LYFvLe~A~nGdll~~i~K~Gs-------fde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDF 218 (604)
T KOG0592|consen 149 LYFVLEYAPNGDLLDLIKKYGS-------FDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDF 218 (604)
T ss_pred eEEEEEecCCCcHHHHHHHhCc-------chHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeec
Confidence 9999999999999999988764 89999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcCC--------------C--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGG--------------D--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~--------------~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|.|+.+.+ . ....+||..|.+||.+.... .+..+|+|+||||+|.|+.|++||..
T Consensus 219 GsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~---------~~~~sDiWAlGCilyQmlaG~PPFra 289 (604)
T KOG0592|consen 219 GSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSP---------AGPSSDLWALGCILYQMLAGQPPFRA 289 (604)
T ss_pred cccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCC---------CCcccchHHHHHHHHHHhcCCCCCcc
Confidence 99987521 1 13478999999999987665 45789999999999999999999943
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=326.57 Aligned_cols=211 Identities=21% Similarity=0.266 Sum_probs=176.9
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeec---cccCHHHHHHHHHHHhhcCCCCcccceeEEEe----cCC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDL---QSVKTEAYLLELDFFSKVSHARLVPLLGHCME----REN 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~----~~~ 603 (766)
....|...+.||+|+||.|..|+ ..+|+.||||++.. .....++-.||+++|+.++|+|||.+.+.+.. .-+
T Consensus 20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~ 99 (359)
T KOG0660|consen 20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN 99 (359)
T ss_pred ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence 34566668999999999999998 57899999999963 22236788999999999999999999997754 224
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
.+|+|+|+|+. ||...|+.++ .++......+..|+.+||.|+|+. +|+|||+||+|+|++.+...||+|
T Consensus 100 DvYiV~elMet-DL~~iik~~~-------~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~D 168 (359)
T KOG0660|consen 100 DVYLVFELMET-DLHQIIKSQQ-------DLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICD 168 (359)
T ss_pred eeEEehhHHhh-HHHHHHHcCc-------cccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEecc
Confidence 69999999964 9999997653 388999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcccccccee
Q 004248 684 LSEVCAQG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTT 758 (766)
Q Consensus 684 FG~a~~~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~ 758 (766)
||+|+... +..+.++.|+||+|||.+..... ||..+||||.|||+.||++||+-| ++....+|+..
T Consensus 169 FGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~--------Yt~aiDiWSvGCI~AEmL~gkplF-pG~d~v~Ql~l 239 (359)
T KOG0660|consen 169 FGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSE--------YTKAIDIWSVGCILAEMLTGKPLF-PGKDYVHQLQL 239 (359)
T ss_pred ccceeeccccCcccchhcceeeeeecCHHHHhcccc--------ccchhhhhhhhHHHHHHHcCCCCC-CCCchHHHHHH
Confidence 99999873 44578899999999998865432 789999999999999999999555 45555555555
Q ss_pred eEEE
Q 004248 759 IIKL 762 (766)
Q Consensus 759 ~~~~ 762 (766)
|.++
T Consensus 240 I~~~ 243 (359)
T KOG0660|consen 240 ILEL 243 (359)
T ss_pred HHHh
Confidence 5443
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=338.81 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=174.8
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecc----cc--CHHHHHHHHHHHhhcC-CCCcccceeEEEecCC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQ----SV--KTEAYLLELDFFSKVS-HARLVPLLGHCMEREN 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~----~~--~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~ 603 (766)
..+.|...+.||+|+||+||.|. ..+|..||||.++.. .. ..+.+.+|+.++++++ ||||+++++++.. ..
T Consensus 15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t-~~ 93 (370)
T KOG0583|consen 15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFAT-PT 93 (370)
T ss_pred ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEec-CC
Confidence 45678999999999999999998 567899999977653 11 2446778999999999 9999999997765 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEec
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLG 682 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~ 682 (766)
.+|+||||+.+|+|.+++.+++ .+.+....+++.|++.|++|+|++ +|+||||||+|||+|.+ +++||+
T Consensus 94 ~~~ivmEy~~gGdL~~~i~~~g-------~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~ 163 (370)
T KOG0583|consen 94 KIYIVMEYCSGGDLFDYIVNKG-------RLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLS 163 (370)
T ss_pred eEEEEEEecCCccHHHHHHHcC-------CCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEe
Confidence 7999999999999999998744 388899999999999999999998 99999999999999999 999999
Q ss_pred cchhhhhc---CCCCccceeeecccCCCCCCCCc-eeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 683 SLSEVCAQ---GGDAHQSRITRLLRLPQSSEQGS-SGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 683 DFG~a~~~---~~~~~~~~~t~~y~aPe~~~~~~-~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|||++... +....+.+||+.|+|||.+.... | -+.++||||+||+||.|++|+.||++.+
T Consensus 164 DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y--------~g~~aDvWS~GViLy~ml~G~~PF~d~~ 227 (370)
T KOG0583|consen 164 DFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTY--------SGKAADVWSLGVILYVLLCGRLPFDDSN 227 (370)
T ss_pred ccccccccCCCCCcccCCCCCcccCCHHHhCCCCCc--------CCchhhhhhhHHHHHHHHhCCCCCCCcc
Confidence 99999876 34567889999999999987654 4 2579999999999999999999997643
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=351.64 Aligned_cols=201 Identities=21% Similarity=0.314 Sum_probs=168.6
Q ss_pred CCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
+.+..+.||+|+||+||+|+. ++.+.||||.++..... +++|+||+++|++++|||||+|+|.|.+ ++..+
T Consensus 487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~-~~P~~ 565 (774)
T KOG1026|consen 487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCRE-GDPLC 565 (774)
T ss_pred heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEcc-CCeeE
Confidence 345568899999999999984 23578999999765443 6799999999999999999999999987 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCC---Cc----CCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTE---DD----LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~---~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
+|+|||..|||.++|+.+.... .. ..+++..+.+.||.|||.||+||-++ .+|||||..+|+||.++..+
T Consensus 566 MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~V 642 (774)
T KOG1026|consen 566 MVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVV 642 (774)
T ss_pred EEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEE
Confidence 9999999999999997543211 11 23489999999999999999999988 89999999999999999999
Q ss_pred EeccchhhhhcCCCC-c----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 680 RLGSLSEVCAQGGDA-H----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 680 kl~DFG~a~~~~~~~-~----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
||+|||++|...... . ....-..||+||.+..+. +|++||||||||||||+.| |+.|+..
T Consensus 643 KIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~k---------FTteSDVWs~GVvLWEIFsyG~QPy~g 708 (774)
T KOG1026|consen 643 KISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGK---------FTTESDVWSFGVVLWEIFSYGKQPYYG 708 (774)
T ss_pred EecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCc---------ccchhhhhhhhhhhhhhhccccCcccc
Confidence 999999999763221 1 122344689999987655 6999999999999999998 9999953
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=325.82 Aligned_cols=197 Identities=22% Similarity=0.315 Sum_probs=167.9
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCC-cEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMEREN-EKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-~~~lV~Ey 611 (766)
++...+.||+|+||.||.+.. ++|...|||.+...... .+.+.+|+++|.+++|||||+.+|.....++ .+++.|||
T Consensus 18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy 97 (313)
T KOG0198|consen 18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEY 97 (313)
T ss_pred hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeec
Confidence 456678999999999999995 55999999999765322 4668999999999999999999996444343 68999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhhhc
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVCAQ 690 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~~~ 690 (766)
+++|+|.+++.+.++ .+++...+.++.||++||+|||++ +||||||||+|||++. ++.+||+|||+++..
T Consensus 98 ~~~GsL~~~~~~~g~------~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~ 168 (313)
T KOG0198|consen 98 APGGSLSDLIKRYGG------KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKL 168 (313)
T ss_pred cCCCcHHHHHHHcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCcccccc
Confidence 999999999987642 399999999999999999999998 9999999999999999 799999999999866
Q ss_pred CC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. ......||+.|||||++..+.. ...++||||+||++.||+||++||..
T Consensus 169 ~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~--------~~~~sDiWSlGCtVvEM~Tg~~PW~~ 224 (313)
T KOG0198|consen 169 ESKGTKSDSELSVQGTPNYMAPEVIRNGEV--------ARRESDIWSLGCTVVEMLTGKPPWSE 224 (313)
T ss_pred ccccccccccccccCCccccCchhhcCCCc--------CCccchhhhcCCEEEeccCCCCcchh
Confidence 42 2335689999999999875321 23589999999999999999999853
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=334.37 Aligned_cols=195 Identities=21% Similarity=0.287 Sum_probs=174.4
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
..|....+||+|+.|.||.|. ..+++.||||++...... ++-..+|+.+|+..+|+|||.+++.|.. .+++|+||||
T Consensus 273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv-~deLWVVMEy 351 (550)
T KOG0578|consen 273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLV-GDELWVVMEY 351 (550)
T ss_pred hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcc-cceeEEEEee
Confidence 347778899999999999998 677899999999887766 5567899999999999999999998776 4689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|+||+|-+++... .+++.++..|+.++++||+|||.+ +|||||||++|||++.+|.+||+|||++..+.
T Consensus 352 m~ggsLTDvVt~~--------~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~ 420 (550)
T KOG0578|consen 352 MEGGSLTDVVTKT--------RMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQIS 420 (550)
T ss_pred cCCCchhhhhhcc--------cccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccc
Confidence 9999999998643 389999999999999999999998 99999999999999999999999999998763
Q ss_pred C---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 G---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. ...+.+||++|||||++....| ++|+||||||+++.||+-|.+||..+
T Consensus 421 ~~~~KR~TmVGTPYWMAPEVvtrk~Y---------G~KVDIWSLGIMaIEMveGEPPYlnE 472 (550)
T KOG0578|consen 421 EEQSKRSTMVGTPYWMAPEVVTRKPY---------GPKVDIWSLGIMAIEMVEGEPPYLNE 472 (550)
T ss_pred cccCccccccCCCCccchhhhhhccc---------CccccchhhhhHHHHHhcCCCCccCC
Confidence 2 4566789999999999987775 57999999999999999999999653
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=303.30 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=176.9
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..+.+|+|.||.||.|+ .+++-.||+|++.+.+.. .++++||++|-+.++||||.++|+|+.+ +...||
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd-~~riyL 99 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHD-SKRIYL 99 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheec-cceeEE
Confidence 3578999999999999999999 667889999999765542 5679999999999999999999998887 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
++||.++|++...|+.++. ..+++.....|+.|+|.||.|+|.. +||||||||+|+|++.++..||+|||-+
T Consensus 100 ilEya~~gel~k~L~~~~~-----~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGws 171 (281)
T KOG0580|consen 100 ILEYAPRGELYKDLQEGRM-----KRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWS 171 (281)
T ss_pred EEEecCCchHHHHHHhccc-----ccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCce
Confidence 9999999999999985443 3488888899999999999999997 9999999999999999999999999987
Q ss_pred hhc-CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 688 CAQ-GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 688 ~~~-~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....+.+||..|.+||...+..+ +.++|+|++||..||++.|.+||.+..
T Consensus 172 V~~p~~kR~tlcgt~dyl~pEmv~~~~h---------d~~Vd~w~lgvl~yeflvg~ppFes~~ 226 (281)
T KOG0580|consen 172 VHAPSNKRKTLCGTLDYLPPEMVEGRGH---------DKFVDLWSLGVLCYEFLVGLPPFESQS 226 (281)
T ss_pred eecCCCCceeeecccccCCHhhcCCCCc---------cchhhHHHHHHHHHHHHhcCCchhhhh
Confidence 665 445667899999999999887664 779999999999999999999996554
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.31 Aligned_cols=194 Identities=20% Similarity=0.260 Sum_probs=170.7
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 606 (766)
.++|....++|+|+||+|+.|.. .+++.+|||.++++..- .+....|.+|+.-. +||.++.++. |+++.+++|
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~-~fQT~~~l~ 445 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFS-CFQTKEHLF 445 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccc-ccccCCeEE
Confidence 46788999999999999999994 56889999999876542 45678888888877 5999999998 667778999
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+.|||+..+.+. ..+++.+...||.+|+.||.|||++ +|||||||-+|||||.+|++||+|||+
T Consensus 446 fvmey~~Ggdm~~~~~~--------~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGl 514 (694)
T KOG0694|consen 446 FVMEYVAGGDLMHHIHT--------DVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGL 514 (694)
T ss_pred EEEEecCCCcEEEEEec--------ccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEeccccc
Confidence 99999999996555542 2399999999999999999999998 999999999999999999999999999
Q ss_pred hhhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 687 VCAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 687 a~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++.. +..+++.+||+.|+|||++.... |+..+|+|||||+||||+.|..||.
T Consensus 515 cKe~m~~g~~TsTfCGTpey~aPEil~e~~---------Yt~aVDWW~lGVLlyeML~Gq~PF~ 569 (694)
T KOG0694|consen 515 CKEGMGQGDRTSTFCGTPEFLAPEVLTEQS---------YTRAVDWWGLGVLLYEMLVGESPFP 569 (694)
T ss_pred ccccCCCCCccccccCChhhcChhhhccCc---------ccchhhHHHHHHHHHHHHcCCCCCC
Confidence 9864 56678899999999999987766 4788999999999999999999993
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=317.66 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=175.6
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..++||.|..++||+|+ .+.++.||||+++.++.. .+.+++|+..|+.++|||||+.+..|.. +.++|+||
T Consensus 25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv-~~~LWvVm 103 (516)
T KOG0582|consen 25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVV-DSELWVVM 103 (516)
T ss_pred ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEe-cceeEEee
Confidence 4679999999999999999998 788899999999876655 4688999999999999999999986654 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
.||.+|++.+++...-. ..+++..+..|.+++++||.|||++ +-||||||+.|||||++|.+||+|||....
T Consensus 104 pfMa~GS~ldIik~~~~-----~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~ 175 (516)
T KOG0582|consen 104 PFMAGGSLLDIIKTYYP-----DGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSAS 175 (516)
T ss_pred hhhcCCcHHHHHHHHcc-----ccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeee
Confidence 99999999999976432 2389999999999999999999998 999999999999999999999999997654
Q ss_pred c---CCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 Q---GGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~---~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. +.+ ..+.++|++|||||+......|| +.|+||||||++..||++|+.||...
T Consensus 176 l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GY-------dfKaDIwSfGITA~ELA~G~aPf~k~ 235 (516)
T KOG0582|consen 176 LFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGY-------DFKADIWSFGITACELAHGHAPFSKY 235 (516)
T ss_pred ecccCceeeEeeccccCcccccChHHhhhcccCc-------cchhhhhhhhHHHHHHhcCCCCcccC
Confidence 3 211 14558999999999977777774 89999999999999999999999543
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=331.40 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=176.8
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+-|+..+.+|+|+.|.|-.|+ ..+|+.+|||.+..... ....+.+|+.+|+-+.||||+++|+++.. ..++|+|
T Consensus 12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~-~~~lylv 90 (786)
T KOG0588|consen 12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWEN-KQHLYLV 90 (786)
T ss_pred cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeecc-CceEEEE
Confidence 346677899999999999998 78999999999976532 24578999999999999999999997655 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
.||+++|.|++++.+++. +++.+..+++.||+.|+.|+|+. +|+|||+||+|+|||.++++||+|||+|.
T Consensus 91 lEyv~gGELFdylv~kG~-------l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAs 160 (786)
T KOG0588|consen 91 LEYVPGGELFDYLVRKGP-------LPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMAS 160 (786)
T ss_pred EEecCCchhHHHHHhhCC-------CCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceee
Confidence 999999999999987765 89999999999999999999997 99999999999999999999999999998
Q ss_pred hc--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 689 AQ--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 689 ~~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
.. +.-..++||++.|.+||++.+..|. +.++||||.|||||.|+||+.||++.+.
T Consensus 161 Le~~gklLeTSCGSPHYA~PEIV~G~pYd--------G~~sDVWSCGVILfALLtG~LPFdDdNi 217 (786)
T KOG0588|consen 161 LEVPGKLLETSCGSPHYAAPEIVSGRPYD--------GRPSDVWSCGVILFALLTGKLPFDDDNI 217 (786)
T ss_pred cccCCccccccCCCcccCCchhhcCCCCC--------CCccccchhHHHHHHHHhCCCCCCCccH
Confidence 76 3335778999999999999988773 5799999999999999999999975543
|
|
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=314.67 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=175.8
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCH----HHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT----EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~----~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+|+..+.+|+|.||+|-+|. ...|+.||||.++++..+. -.+++|++||+.++|||||.+|.+|.. .+.+.+||
T Consensus 54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFEN-kdKIvivM 132 (668)
T KOG0611|consen 54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFEN-KDKIVIVM 132 (668)
T ss_pred HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcC-CceEEEEE
Confidence 47777899999999999998 5789999999998876652 258899999999999999999996654 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||..+|+|++++.+++. +++.+...+++||..|+.|+|.+ +++|||||.+|||+|.++++||+|||++..
T Consensus 133 EYaS~GeLYDYiSer~~-------LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNl 202 (668)
T KOG0611|consen 133 EYASGGELYDYISERGS-------LSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNL 202 (668)
T ss_pred EecCCccHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhh
Confidence 99999999999987654 99999999999999999999998 999999999999999999999999999987
Q ss_pred cCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+.. -..+.||++.|.+||++.+..| -++.+|-||+||+||.++.|-.||+..+
T Consensus 203 y~~~kfLqTFCGSPLYASPEIvNG~PY--------~GPEVDsWsLGvLLYtLVyGtMPFDG~D 257 (668)
T KOG0611|consen 203 YADKKFLQTFCGSPLYASPEIVNGTPY--------KGPEVDSWSLGVLLYTLVYGTMPFDGRD 257 (668)
T ss_pred hccccHHHHhcCCcccCCccccCCCCC--------CCCccchhhHHHHHHHHhhcccccCCch
Confidence 743 3578899999999999887766 3588999999999999999999996543
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=321.59 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=166.4
Q ss_pred HHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---------------CHHHHHHHHHHHhhcCCCCcccc
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---------------KTEAYLLELDFFSKVSHARLVPL 594 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---------------~~~~~~~E~~~l~~l~H~niv~l 594 (766)
+..+.|+..+.||+|.||+|-+|+ ..+++.||||.+.+... ..++..+||.+|++++|||||+|
T Consensus 94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L 173 (576)
T KOG0585|consen 94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL 173 (576)
T ss_pred eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence 345779999999999999999999 56799999999965321 12578999999999999999999
Q ss_pred eeEEEec-CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 595 LGHCMER-ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 595 ~~~~~~~-~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+.+-.+. .+.+|||+|||..|.+...=. ....+++.+.++|..++..||+|||.+ +||||||||+|+||
T Consensus 174 iEvLDDP~s~~~YlVley~s~G~v~w~p~-------d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl 243 (576)
T KOG0585|consen 174 IEVLDDPESDKLYLVLEYCSKGEVKWCPP-------DKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLL 243 (576)
T ss_pred EEeecCcccCceEEEEEeccCCccccCCC-------CcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEE
Confidence 9955332 247999999999988753221 112389999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcC--------CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQG--------GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~--------~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p 745 (766)
+++|++||+|||.+.... +.....+||++++|||.+..+...+. .+.+.||||+||+||.|+.|+.|
T Consensus 244 ~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~-----~g~a~DiWalGVTLYCllfG~~P 318 (576)
T KOG0585|consen 244 SSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSY-----SGFALDIWALGVTLYCLLFGQLP 318 (576)
T ss_pred cCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccc-----cchhhhhhhhhhhHHHhhhccCC
Confidence 999999999999986541 11234689999999998876442221 47899999999999999999999
Q ss_pred CCC
Q 004248 746 NLS 748 (766)
Q Consensus 746 ~~~ 748 (766)
|.+
T Consensus 319 F~~ 321 (576)
T KOG0585|consen 319 FFD 321 (576)
T ss_pred ccc
Confidence 953
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=332.51 Aligned_cols=197 Identities=17% Similarity=0.223 Sum_probs=168.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||+||+|.. .+++.||||+++.... ..+.+.+|++++.+++||||+++++.+.+ ++..|+|
T Consensus 1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~-~~~~~lv 79 (363)
T cd05628 1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQD-KLNLYLI 79 (363)
T ss_pred CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEec-CCeEEEE
Confidence 4788999999999999999984 5689999999975432 13568889999999999999999987665 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++|+|.+++.+++ .+++.+...++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~E~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~ 149 (363)
T cd05628 80 MEFLPGGDMMTLLMKKD-------TLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCT 149 (363)
T ss_pred EcCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCcc
Confidence 99999999999997653 389999999999999999999997 99999999999999999999999999987
Q ss_pred hcCCC--------------------------------------CccceeeecccCCCCCCCCceeeeeeeeeccccccee
Q 004248 689 AQGGD--------------------------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIY 730 (766)
Q Consensus 689 ~~~~~--------------------------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~ 730 (766)
..... ....+||+.|+|||.+.... ++.++|||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~---------~~~~~Dvw 220 (363)
T cd05628 150 GLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTG---------YNKLCDWW 220 (363)
T ss_pred cccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCC---------CCCchhhh
Confidence 54211 12346899999999876543 47899999
Q ss_pred cchHHHHHHhcCCCCCCCCc
Q 004248 731 FHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 731 s~Gvvl~elltG~~p~~~~~ 750 (766)
||||++|||++|+.||....
T Consensus 221 SlGvil~ell~G~~Pf~~~~ 240 (363)
T cd05628 221 SLGVIMYEMLIGYPPFCSET 240 (363)
T ss_pred hhHHHHHHHHhCCCCCCCCC
Confidence 99999999999999996443
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=326.64 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=171.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+++.||||.+..... ..+.+.+|++++++++|||||++++++.. ++..|+|
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv 96 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQD-ENRVYFL 96 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEc-CCEEEEE
Confidence 5688899999999999999995 5689999999975432 24578999999999999999999997765 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. .+++.....++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++
T Consensus 97 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~ 166 (329)
T PTZ00263 97 LEFVVGGELFTHLRKAG-------RFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAK 166 (329)
T ss_pred EcCCCCChHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCce
Confidence 99999999999997643 378999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..........+|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 167 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~elltg~~pf~~~ 218 (329)
T PTZ00263 167 KVPDRTFTLCGTPEYLAPEVIQSKG---------HGKAVDWWTMGVLLYEFIAGYPPFFDD 218 (329)
T ss_pred EcCCCcceecCChhhcCHHHHcCCC---------CCCcceeechHHHHHHHHcCCCCCCCC
Confidence 7755555567899999999876544 468999999999999999999999643
|
|
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=322.14 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=170.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|.. .+|+.||+|++..... ..+.+.+|++++++++||||+++++++.+ ++..|+|
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv 79 (291)
T cd05612 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-QRFLYML 79 (291)
T ss_pred CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc-CCeEEEE
Confidence 4688899999999999999995 4789999999975432 24568899999999999999999987665 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++.....++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++
T Consensus 80 ~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~ 149 (291)
T cd05612 80 MEYVPGGELFSYLRNSG-------RFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAK 149 (291)
T ss_pred EeCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcch
Confidence 99999999999997653 389999999999999999999997 99999999999999999999999999998
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..........||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il~~l~~g~~pf~~~ 201 (291)
T cd05612 150 KLRDRTWTLCGTPEYLAPEVIQSKG---------HNKAVDWWALGILIYEMLVGYPPFFDD 201 (291)
T ss_pred hccCCcccccCChhhcCHHHHcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 7755555567899999999875443 468999999999999999999999644
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=338.68 Aligned_cols=209 Identities=20% Similarity=0.313 Sum_probs=175.7
Q ss_pred ccccHHHHHHHhCCC---------CccceeecCCcceEEEEEEcC----CcEEEEEEeecccc--CHHHHHHHHHHHhhc
Q 004248 522 ESFTYQQLLAATGDF---------SDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSV--KTEAYLLELDFFSKV 586 (766)
Q Consensus 522 ~~~~~~~l~~~~~~~---------~~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l 586 (766)
..+||||.-+|...| .+.++||.|.||+||+|.++- ...||||.++.... ++.+|+.|+.||++.
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQF 687 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQF 687 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccC
Confidence 457888777666655 346889999999999999532 46899999987654 367899999999999
Q ss_pred CCCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCC
Q 004248 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV 666 (766)
Q Consensus 587 ~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDl 666 (766)
.|||||+|.|+... ...+++|.|||++|+|+.+|+++.+ .++|.+...+.++||.||.||.+. +.|||||
T Consensus 688 dHPNIIrLEGVVTk-s~PvMIiTEyMENGsLDsFLR~~DG------qftviQLVgMLrGIAsGMkYLsdm---~YVHRDL 757 (996)
T KOG0196|consen 688 DHPNIIRLEGVVTK-SKPVMIITEYMENGSLDSFLRQNDG------QFTVIQLVGMLRGIASGMKYLSDM---NYVHRDL 757 (996)
T ss_pred CCCcEEEEEEEEec-CceeEEEhhhhhCCcHHHHHhhcCC------ceEeehHHHHHHHHHHHhHHHhhc---Cchhhhh
Confidence 99999999997765 5689999999999999999998765 389999999999999999999987 9999999
Q ss_pred CCCCeeeCCCCcEEeccchhhhhcCCCC-ccc--ee---eecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh
Q 004248 667 QASSILLDDKFEVRLGSLSEVCAQGGDA-HQS--RI---TRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 667 Kp~NILl~~~~~~kl~DFG~a~~~~~~~-~~~--~~---t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
.++|||++.+...||+|||++|...++. ..+ .| -..|.|||.+.... +|.++|||||||||||.+
T Consensus 758 AARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RK---------FTsASDVWSyGIVmWEVm 828 (996)
T KOG0196|consen 758 AARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRK---------FTSASDVWSYGIVMWEVM 828 (996)
T ss_pred hhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcc---------cCchhhccccceEEEEec
Confidence 9999999999999999999999874432 111 11 23688999987655 689999999999999966
Q ss_pred c-CCCCCCCC
Q 004248 741 F-NNHLNLSS 749 (766)
Q Consensus 741 t-G~~p~~~~ 749 (766)
+ |.+|+.+.
T Consensus 829 SyGERPYWdm 838 (996)
T KOG0196|consen 829 SYGERPYWDM 838 (996)
T ss_pred ccCCCccccc
Confidence 5 99999543
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=326.56 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=170.7
Q ss_pred CCCCccceeecCCcceEEEEEEc-C-CcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-G-GIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~-g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|... + +..||+|++..... ..+.+.+|+++++.++|||||++++++.+ ++..|+
T Consensus 30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-~~~~~l 108 (340)
T PTZ00426 30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKD-ESYLYL 108 (340)
T ss_pred hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEe-CCEEEE
Confidence 46888999999999999999843 3 46899999965432 24578899999999999999999998765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+|||++.++++||+|||++
T Consensus 109 v~Ey~~~g~L~~~i~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a 178 (340)
T PTZ00426 109 VLEFVIGGEFFTFLRRNK-------RFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFA 178 (340)
T ss_pred EEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCC
Confidence 999999999999997654 389999999999999999999997 9999999999999999999999999999
Q ss_pred hhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 688 CAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 688 ~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+..........||+.|+|||.+.... ++.++|||||||++|||+||+.||...+
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvil~ell~G~~Pf~~~~ 232 (340)
T PTZ00426 179 KVVDTRTYTLCGTPEYIAPEILLNVG---------HGKAADWWTLGIFIYEILVGCPPFYANE 232 (340)
T ss_pred eecCCCcceecCChhhcCHHHHhCCC---------CCccccccchhhHHHHHhcCCCCCCCCC
Confidence 87755555667899999999876543 4679999999999999999999996543
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=325.93 Aligned_cols=202 Identities=19% Similarity=0.336 Sum_probs=170.2
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
+++....+.+...+.||+|+||+||||++.+ .||||.++.... +.+.|++|+.++++-+|.||+=+.|||...
T Consensus 385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p-- 460 (678)
T KOG0193|consen 385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP-- 460 (678)
T ss_pred cccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC--
Confidence 3444444455667899999999999999875 599999976543 357899999999999999999999999763
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
...+|..+|+|-+|+.+||..+ ..++..+...||.|||+||.|||.+ +|||||||+.||++++++.+||+|
T Consensus 461 ~~AIiTqwCeGsSLY~hlHv~e------tkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgD 531 (678)
T KOG0193|consen 461 PLAIITQWCEGSSLYTHLHVQE------TKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGD 531 (678)
T ss_pred ceeeeehhccCchhhhhccchh------hhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEec
Confidence 4599999999999999998654 3589999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 684 LSEVCAQG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 684 FG~a~~~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
||++.... .......+...|||||++..... .+ +++.+||||||||+|||+||..||.
T Consensus 532 FGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~--nP----fS~qSDVYaFGiV~YELltg~lPys 594 (678)
T KOG0193|consen 532 FGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDD--NP----FSFQSDVYAFGIVWYELLTGELPYS 594 (678)
T ss_pred ccceeeeeeeccccccCCCccchhhhcHHHHhhccc--CC----CCcccchhhhhHHHHHHHhCcCCcC
Confidence 99986531 11233456778999998864432 22 7999999999999999999999995
|
|
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=330.88 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=167.5
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.|+..+.||+|+||+||+|+ ..+++.||||++..... ..+.+.+|++++++++|||||++++++.+ ++..|+||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~-~~~~~lv~ 80 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQD-KDNLYFVM 80 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEec-CCEEEEEE
Confidence 57889999999999999998 46789999999976432 24568999999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++.+.. .+++.....++.|++.||+|||+. +|+||||||+|||++.++++||+|||+++.
T Consensus 81 E~~~gg~L~~~l~~~~-------~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~ 150 (381)
T cd05626 81 DYIPGGDMMSLLIRME-------VFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTG 150 (381)
T ss_pred ecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCcc
Confidence 9999999999997643 388999999999999999999997 999999999999999999999999999753
Q ss_pred cCC--------------------------------------------------CCccceeeecccCCCCCCCCceeeeee
Q 004248 690 QGG--------------------------------------------------DAHQSRITRLLRLPQSSEQGSSGMVIY 719 (766)
Q Consensus 690 ~~~--------------------------------------------------~~~~~~~t~~y~aPe~~~~~~~g~~~~ 719 (766)
... .....+||..|+|||.+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~------ 224 (381)
T cd05626 151 FRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKG------ 224 (381)
T ss_pred cccccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCC------
Confidence 210 012346899999999876543
Q ss_pred eeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 720 LFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 720 ~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
++.++|||||||++|||+||+.||...+.
T Consensus 225 ---~~~~~DiwSlG~il~elltG~~Pf~~~~~ 253 (381)
T cd05626 225 ---YTQLCDWWSVGVILFEMLVGQPPFLAPTP 253 (381)
T ss_pred ---CCCccceeehhhHHHHHHhCCCCCcCCCH
Confidence 46799999999999999999999965443
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.51 Aligned_cols=196 Identities=20% Similarity=0.195 Sum_probs=167.8
Q ss_pred CCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|+..+.||+|+||.||+|. ..+|+.||||.+...... ...+.+|++++++++|+||+++++++.+ ++..++|||
T Consensus 2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~-~~~~~lv~e 80 (285)
T cd05631 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYET-KDALCLVLT 80 (285)
T ss_pred ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEcc-CCeEEEEEE
Confidence 6778999999999999998 467999999998754322 3468899999999999999999987765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||++|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++..
T Consensus 81 ~~~~g~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~ 152 (285)
T cd05631 81 IMNGGDLKFHIYNMGN-----PGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQI 152 (285)
T ss_pred ecCCCcHHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEc
Confidence 9999999988864332 2489999999999999999999997 9999999999999999999999999999765
Q ss_pred CC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......+|..|+|||.+.... ++.++|||||||++|||++|+.||...
T Consensus 153 ~~~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~DvwslGvil~el~~g~~pf~~~ 204 (285)
T cd05631 153 PEGETVRGRVGTVGYMAPEVINNEK---------YTFSPDWWGLGCLIYEMIQGQSPFRKR 204 (285)
T ss_pred CCCCeecCCCCCCCccCHhhhcCCC---------CCcccCchhHHHHHHHHHhCCCCCCCC
Confidence 32 223456899999999986544 478999999999999999999999643
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=323.17 Aligned_cols=196 Identities=19% Similarity=0.196 Sum_probs=171.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+++.||||+++.... ..+.+.+|++++.+++||||+++++++.. ++..|+|
T Consensus 1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-~~~~~lv 79 (333)
T cd05600 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQD-DEYLYLA 79 (333)
T ss_pred CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEc-CCEEEEE
Confidence 4688999999999999999995 4689999999975432 24568899999999999999999987765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++
T Consensus 80 ~e~~~g~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~ 149 (333)
T cd05600 80 MEYVPGGDFRTLLNNLG-------VLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSK 149 (333)
T ss_pred EeCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCc
Confidence 99999999999997543 388999999999999999999997 99999999999999999999999999998
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..........+|..|+|||.+.... ++.++|||||||++|||++|+.||...
T Consensus 150 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslG~il~ell~g~~pf~~~ 201 (333)
T cd05600 150 GIVTYANSVVGSPDYMAPEVLRGKG---------YDFTVDYWSLGCMLYEFLCGFPPFSGS 201 (333)
T ss_pred ccccccCCcccCccccChhHhcCCC---------CCCccceecchHHHhhhhhCCCCCCCC
Confidence 7655555567899999999876543 578999999999999999999999644
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=327.91 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=167.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|+++++.++||||+++++++.+ ++..|+|
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-~~~~~lv 79 (364)
T cd05599 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQD-ENYLYLI 79 (364)
T ss_pred CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-CCeEEEE
Confidence 4788999999999999999995 5789999999975432 23568899999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~E~~~~g~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~ 149 (364)
T cd05599 80 MEYLPGGDMMTLLMKKD-------TFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCT 149 (364)
T ss_pred ECCCCCcHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccce
Confidence 99999999999997643 389999999999999999999998 99999999999999999999999999986
Q ss_pred hcCCC-----------------------------------------CccceeeecccCCCCCCCCceeeeeeeeeccccc
Q 004248 689 AQGGD-----------------------------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIF 727 (766)
Q Consensus 689 ~~~~~-----------------------------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~ 727 (766)
..... ....+||+.|+|||...... ++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~ 220 (364)
T cd05599 150 GLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTG---------YNKEC 220 (364)
T ss_pred eccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCC---------CCCee
Confidence 53211 01235899999999875443 47899
Q ss_pred ceecchHHHHHHhcCCCCCCCC
Q 004248 728 HIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 728 Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||||||++|||++|+.||...
T Consensus 221 DiwSlG~il~el~~G~~Pf~~~ 242 (364)
T cd05599 221 DWWSLGVIMYEMLVGYPPFCSD 242 (364)
T ss_pred eeecchhHHHHhhcCCCCCCCC
Confidence 9999999999999999999644
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=320.57 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=163.6
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
++||+|+||.||+|+. .+|+.||||+++.... ...++.+|++++++++||||+++++++.. ++..|+||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-~~~~~lv~e~~~~ 79 (323)
T cd05571 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQT-HDRLCFVMEYANG 79 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEc-CCEEEEEEeCCCC
Confidence 4699999999999984 6789999999975432 13468899999999999999999987665 5689999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---C
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ---G 691 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~---~ 691 (766)
|+|.+++.+.+ .+++.+...++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++.. .
T Consensus 80 ~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~ 149 (323)
T cd05571 80 GELFFHLSRER-------VFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG 149 (323)
T ss_pred CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCC
Confidence 99999997543 389999999999999999999998 9999999999999999999999999998754 2
Q ss_pred CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 150 ~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il~elltg~~Pf~~~ 198 (323)
T cd05571 150 ATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQ 198 (323)
T ss_pred CcccceecCccccChhhhcCCC---------CCccccCcccchhhhhhhcCCCCCCCC
Confidence 2233457899999999886544 467999999999999999999999654
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=328.83 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=166.5
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|. ..+++.||||++..... ..+.+.+|++++++++|||||++++++.+ .+..|+|
T Consensus 1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-~~~~~lv 79 (377)
T cd05629 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQD-AQYLYLI 79 (377)
T ss_pred CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEc-CCeeEEE
Confidence 468889999999999999998 46789999999865432 13568899999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++.....++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~ 149 (377)
T cd05629 80 MEFLPGGDLMTMLIKYD-------TFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLST 149 (377)
T ss_pred EeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeeccccc
Confidence 99999999999997543 388999999999999999999997 99999999999999999999999999986
Q ss_pred hcCCC--------------------------------------------------CccceeeecccCCCCCCCCceeeee
Q 004248 689 AQGGD--------------------------------------------------AHQSRITRLLRLPQSSEQGSSGMVI 718 (766)
Q Consensus 689 ~~~~~--------------------------------------------------~~~~~~t~~y~aPe~~~~~~~g~~~ 718 (766)
..... ....+||+.|+|||.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----- 224 (377)
T cd05629 150 GFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQG----- 224 (377)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCC-----
Confidence 32100 00235899999999876544
Q ss_pred eeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 719 YLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 719 ~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++.++|||||||++|||+||+.||...
T Consensus 225 ----~~~~~DiwSlGvil~elltG~~Pf~~~ 251 (377)
T cd05629 225 ----YGQECDWWSLGAIMFECLIGWPPFCSE 251 (377)
T ss_pred ----CCCceeeEecchhhhhhhcCCCCCCCC
Confidence 468999999999999999999999643
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=328.58 Aligned_cols=196 Identities=17% Similarity=0.189 Sum_probs=166.4
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+|+..++||+|+||.||+|+. .+++.||||++..... ..+.+.+|++++++++|||||++++.+.+ ++..|+||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~-~~~~~lv~ 80 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQD-KDNLYFVM 80 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEe-CCEEEEEE
Confidence 588899999999999999984 6789999999975432 24578899999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||++|+|.+++.+.+ .+++.....++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++.
T Consensus 81 E~~~gg~L~~~l~~~~-------~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~ 150 (382)
T cd05625 81 DYIPGGDMMSLLIRMG-------IFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTG 150 (382)
T ss_pred eCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCcc
Confidence 9999999999997543 378888999999999999999997 999999999999999999999999999753
Q ss_pred cCC--------------------------------------------------CCccceeeecccCCCCCCCCceeeeee
Q 004248 690 QGG--------------------------------------------------DAHQSRITRLLRLPQSSEQGSSGMVIY 719 (766)
Q Consensus 690 ~~~--------------------------------------------------~~~~~~~t~~y~aPe~~~~~~~g~~~~ 719 (766)
... .....+||+.|+|||.+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~------ 224 (382)
T cd05625 151 FRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTG------ 224 (382)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCC------
Confidence 210 011236899999999886543
Q ss_pred eeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 720 LFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 720 ~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
++.++||||+||++|||+||+.||...+
T Consensus 225 ---~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (382)
T cd05625 225 ---YTQLCDWWSVGVILYEMLVGQPPFLAQT 252 (382)
T ss_pred ---CCCeeeEEechHHHHHHHhCCCCCCCCC
Confidence 4679999999999999999999996543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=327.29 Aligned_cols=210 Identities=18% Similarity=0.205 Sum_probs=183.6
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-C-----CCcccceeEEEecCCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-H-----ARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H-----~niv~l~~~~~~~~~~~~l 607 (766)
+|...++||+|+||.|.||. ..+++.||||.++....-..+-..|+.+|..++ | -|+|++++|+.. .++.+|
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~f-r~Hlci 265 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYF-RNHLCI 265 (586)
T ss_pred EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccc-ccceee
Confidence 68889999999999999999 577999999999866555566778999999997 4 489999998776 578999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC--CcEEeccch
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK--FEVRLGSLS 685 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~--~~~kl~DFG 685 (766)
|+|.++. +|+++|..++. ..++......++.||+.||.+||+. +|||+|||||||||.+. -.+||+|||
T Consensus 266 VfELL~~-NLYellK~n~f-----~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFG 336 (586)
T KOG0667|consen 266 VFELLST-NLYELLKNNKF-----RGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFG 336 (586)
T ss_pred eehhhhh-hHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEecc
Confidence 9999975 99999987654 4589999999999999999999987 99999999999999754 369999999
Q ss_pred hhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEEe
Q 004248 686 EVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLCV 764 (766)
Q Consensus 686 ~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~~ 764 (766)
.+........+++.+++|+|||++.+..| +++.||||||||++||.||. |.++++.+.+|+..|.+++.
T Consensus 337 SSc~~~q~vytYiQSRfYRAPEVILGlpY---------~~~IDmWSLGCIlAEL~tG~-PLfpG~ne~DQl~~I~e~lG 405 (586)
T KOG0667|consen 337 SSCFESQRVYTYIQSRFYRAPEVILGLPY---------DTAIDMWSLGCILAELFTGE-PLFPGDNEYDQLARIIEVLG 405 (586)
T ss_pred cccccCCcceeeeeccccccchhhccCCC---------CCccceeehhhhHHhHhcCc-cccCCCCHHHHHHHHHHHhC
Confidence 99988777778899999999999988774 67999999999999999995 77788888888887776653
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=321.87 Aligned_cols=205 Identities=18% Similarity=0.226 Sum_probs=166.9
Q ss_pred hCCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMEREN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 603 (766)
.++|+..++||+|+||.||+|.. .+++.||||++...... .+.+.+|++++.++ +|||||+++++|....+
T Consensus 6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~ 85 (338)
T cd05102 6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG 85 (338)
T ss_pred hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence 35688899999999999999973 23578999999754322 45789999999999 89999999998876555
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCC-------------------------------------------------------
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTE------------------------------------------------------- 628 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~------------------------------------------------------- 628 (766)
..++||||+++|+|.+++.......
T Consensus 86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T cd05102 86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD 165 (338)
T ss_pred ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence 7899999999999999997532100
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-----Cccceeeecc
Q 004248 629 DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLL 703 (766)
Q Consensus 629 ~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y 703 (766)
.....+++.++..++.||++||+|||+. +|+||||||+|||++.++.+||+|||+++..... .....++..|
T Consensus 166 ~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y 242 (338)
T cd05102 166 LWKSPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKW 242 (338)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccc
Confidence 0013588999999999999999999997 9999999999999999999999999999865221 1122345679
Q ss_pred cCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 704 RLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 704 ~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+|||.+.... ++.++|||||||++|||+| |+.||...
T Consensus 243 ~aPE~~~~~~---------~~~~sDiwslG~il~el~~~g~~pf~~~ 280 (338)
T cd05102 243 MAPESIFDKV---------YTTQSDVWSFGVLLWEIFSLGASPYPGV 280 (338)
T ss_pred cCcHHhhcCC---------CCcccCHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999876543 4789999999999999997 99998543
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.12 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=169.6
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
...++|+..+.||+|+||.||+|+. .+++.||+|.+..... ..+.+.+|+++++.++||||+++++++.. ++..
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~-~~~~ 118 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD-DKYL 118 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-CCEE
Confidence 3456799999999999999999995 5688999999965322 23468899999999999999999997654 6789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+|||||++|+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||
T Consensus 119 ~lv~Ey~~gg~L~~~l~~~--------~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG 187 (370)
T cd05621 119 YMVMEYMPGGDLVNLMSNY--------DVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFG 187 (370)
T ss_pred EEEEcCCCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecc
Confidence 9999999999999998643 278889999999999999999997 99999999999999999999999999
Q ss_pred hhhhcCCC----CccceeeecccCCCCCCCCce-eeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD----AHQSRITRLLRLPQSSEQGSS-GMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~-g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....||..|+|||.+..... ++ ++.++||||+||++|||+||+.||...
T Consensus 188 ~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~------~~~~~DiwSlG~ilyell~G~~Pf~~~ 250 (370)
T cd05621 188 TCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGY------YGRECDWWSVGVFLFEMLVGDTPFYAD 250 (370)
T ss_pred cceecccCCceecccCCCCcccCCHHHHhccCCCCC------CCcccCEEeehHHHHHHHhCCCCCCCC
Confidence 99865322 234568999999998754321 11 478999999999999999999999644
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.47 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.+|+..+.||+|+||.||+|+ ..+++.||||.+..... ..+.+.+|++++++++||||+++++.+.+ ++..|+|
T Consensus 1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-~~~~~lv 79 (376)
T cd05598 1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-KDNLYFV 79 (376)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-CCEEEEE
Confidence 368899999999999999998 45689999999965322 24568899999999999999999997765 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.+ .+++.....++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|.
T Consensus 80 ~E~~~~g~L~~~i~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~ 149 (376)
T cd05598 80 MDYIPGGDMMSLLIRLG-------IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCT 149 (376)
T ss_pred EeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCc
Confidence 99999999999997643 378888899999999999999997 99999999999999999999999999974
Q ss_pred hcCC----------------------------------------------CCccceeeecccCCCCCCCCceeeeeeeee
Q 004248 689 AQGG----------------------------------------------DAHQSRITRLLRLPQSSEQGSSGMVIYLFI 722 (766)
Q Consensus 689 ~~~~----------------------------------------------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~ 722 (766)
.... ......||+.|+|||.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--------- 220 (376)
T cd05598 150 GFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTG--------- 220 (376)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCC---------
Confidence 2210 011246899999999876544
Q ss_pred cccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 723 IFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 723 ~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
++.++|||||||++|||+||+.||...+.
T Consensus 221 ~~~~~DiwSlGvilyell~G~~Pf~~~~~ 249 (376)
T cd05598 221 YTQLCDWWSVGVILYEMLVGQPPFLADTP 249 (376)
T ss_pred CCcceeeeeccceeeehhhCCCCCCCCCH
Confidence 46799999999999999999999965443
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=305.68 Aligned_cols=198 Identities=22% Similarity=0.330 Sum_probs=161.9
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhh--cCCCCcccceeEEEec---CCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSK--VSHARLVPLLGHCMER---ENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~---~~~~~lV~ 609 (766)
.....++||+|+||.||||++.+ +.||||++.... .+.|..|-+|.+. ++|+||++++++-... ..+++||+
T Consensus 211 pl~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~~--kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt 287 (534)
T KOG3653|consen 211 PLQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQE--KQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVT 287 (534)
T ss_pred chhhHHHhhcCccceeehhhccC-ceeEEEecCHHH--HHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEe
Confidence 34456789999999999999875 799999996543 4578888888775 5899999999854321 23789999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccC------CCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE------CTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
||.+.|+|.++|..+ .++|....+|+..+++||+|||+. ..|+|+|||||++|||+.+|+++.|+|
T Consensus 288 ~fh~kGsL~dyL~~n--------tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaD 359 (534)
T KOG3653|consen 288 EFHPKGSLCDYLKAN--------TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIAD 359 (534)
T ss_pred eeccCCcHHHHHHhc--------cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeec
Confidence 999999999999764 389999999999999999999974 357999999999999999999999999
Q ss_pred chhhhhcC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 684 LSEVCAQG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 684 FG~a~~~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
||+|..+. ++....+||+.|||||++++...=. + -..-.++||||+|.||+||++.-.-+
T Consensus 360 FGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~--d-~~Afkr~DvYamgLVLWEi~SRC~~~ 424 (534)
T KOG3653|consen 360 FGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQ--D-RDAFKRIDVYAMGLVLWEIASRCTDA 424 (534)
T ss_pred cceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccc--c-HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99997652 3456689999999999987643200 0 01346899999999999999865444
|
|
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=315.61 Aligned_cols=190 Identities=15% Similarity=0.135 Sum_probs=162.7
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
++||+|+||.||+++. .+|+.||+|.++.... ....+.+|++++++++||||+++++++.. ++..|+||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~-~~~~~lv~E~~~~ 79 (323)
T cd05595 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-HDRLCFVMEYANG 79 (323)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEec-CCEEEEEEeCCCC
Confidence 4699999999999984 5789999999975432 23467889999999999999999987765 5689999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC--
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG-- 692 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~-- 692 (766)
|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++....
T Consensus 80 ~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~ 149 (323)
T cd05595 80 GELFFHLSRER-------VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 149 (323)
T ss_pred CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCC
Confidence 99999886543 389999999999999999999997 999999999999999999999999999875321
Q ss_pred -CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 -DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 -~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvil~ell~g~~Pf~~~ 198 (323)
T cd05595 150 ATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQ 198 (323)
T ss_pred CccccccCCcCcCCcccccCCC---------CCchhchhhhHHHHHHHHhCCCCCCCC
Confidence 223356889999999886544 468999999999999999999999644
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=315.06 Aligned_cols=188 Identities=17% Similarity=0.140 Sum_probs=161.7
Q ss_pred eecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||.||+|.. .+++.||+|++..... ..+.+.+|++++++++|||||++++++.. ++..|+||||+++|+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~g~ 79 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQS-PEKLYLVLAFINGGE 79 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEec-CCeEEEEEcCCCCCc
Confidence 69999999999995 5688999999975321 24568899999999999999999987765 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC---CC
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG---GD 693 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~---~~ 693 (766)
|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++... ..
T Consensus 80 L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~ 149 (312)
T cd05585 80 LFHHLQREG-------RFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDK 149 (312)
T ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCc
Confidence 999997543 389999999999999999999997 99999999999999999999999999997642 12
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 150 ~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslGvil~el~tg~~pf~~~ 196 (312)
T cd05585 150 TNTFCGTPEYLAPELLLGHG---------YTKAVDWWTLGVLLYEMLTGLPPFYDE 196 (312)
T ss_pred cccccCCcccCCHHHHcCCC---------CCCccceechhHHHHHHHhCCCCcCCC
Confidence 23456899999999876543 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=315.62 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=162.8
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
++||+|+||.||+|.. .+|+.||||++..... ...++.+|++++++++||||+++++++.. ++..|+||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~Ey~~~ 79 (328)
T cd05593 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQT-KDRLCFVMEYVNG 79 (328)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-CCEEEEEEeCCCC
Confidence 4699999999999984 5789999999975432 24578899999999999999999986654 5689999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC---
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG--- 691 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~--- 691 (766)
|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++...
T Consensus 80 g~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~ 149 (328)
T cd05593 80 GELFFHLSRER-------VFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDA 149 (328)
T ss_pred CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCcc
Confidence 99999886543 389999999999999999999998 99999999999999999999999999987532
Q ss_pred CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......+|..|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslGvil~elltG~~Pf~~~ 198 (328)
T cd05593 150 ATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQ 198 (328)
T ss_pred cccccccCCcCccChhhhcCCC---------CCccCCccccchHHHHHhhCCCCCCCC
Confidence 1223456899999999876543 468999999999999999999999543
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=322.93 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=168.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|.. .+++.||||+++.... ..+.+.+|++++.+++||||+++++.+.+ ++..|+|
T Consensus 1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-~~~~~lv 79 (360)
T cd05627 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQD-KRNLYLI 79 (360)
T ss_pred CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-CCEEEEE
Confidence 4688899999999999999985 5789999999975322 24568889999999999999999987654 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.+ .+++.....++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~E~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~ 149 (360)
T cd05627 80 MEFLPGGDMMTLLMKKD-------TLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCT 149 (360)
T ss_pred EeCCCCccHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCc
Confidence 99999999999997643 389999999999999999999997 99999999999999999999999999986
Q ss_pred hcCCC--------------------------------------CccceeeecccCCCCCCCCceeeeeeeeeccccccee
Q 004248 689 AQGGD--------------------------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIY 730 (766)
Q Consensus 689 ~~~~~--------------------------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~ 730 (766)
..... ....+||+.|+|||.+.... ++.++|||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~---------~~~~~Diw 220 (360)
T cd05627 150 GLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTG---------YNKLCDWW 220 (360)
T ss_pred ccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCC---------CCCcceec
Confidence 43210 11346899999999876543 46899999
Q ss_pred cchHHHHHHhcCCCCCCCCc
Q 004248 731 FHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 731 s~Gvvl~elltG~~p~~~~~ 750 (766)
||||++|||+||+.||....
T Consensus 221 SlGvilyel~tG~~Pf~~~~ 240 (360)
T cd05627 221 SLGVIMYEMLIGYPPFCSET 240 (360)
T ss_pred cccceeeecccCCCCCCCCC
Confidence 99999999999999996544
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=307.71 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=170.1
Q ss_pred cccHHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEE
Q 004248 523 SFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHC 598 (766)
Q Consensus 523 ~~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~ 598 (766)
.++.+++ +......||+|++|.||+|+. +|+.||||+++..... .+.|.+|+++|++++|||||+++|++
T Consensus 14 ~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~ 87 (283)
T PHA02988 14 CIESDDI-----DKYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFI 87 (283)
T ss_pred ecCHHHc-----CCCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeE
Confidence 3455555 233347899999999999997 6889999999754333 35788999999999999999999987
Q ss_pred Ee--c-CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC
Q 004248 599 ME--R-ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675 (766)
Q Consensus 599 ~~--~-~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~ 675 (766)
.+ . ....++||||+++|+|.+++++.+ .++|..+..++.|++.||+|||+. .+++||||||+||++++
T Consensus 88 ~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~-------~~~~~~~~~i~~~i~~~l~~lH~~--~~~~Hrdlkp~nill~~ 158 (283)
T PHA02988 88 IDIVDDLPRLSLILEYCTRGYLREVLDKEK-------DLSFKTKLDMAIDCCKGLYNLYKY--TNKPYKNLTSVSFLVTE 158 (283)
T ss_pred EecccCCCceEEEEEeCCCCcHHHHHhhCC-------CCChhHHHHHHHHHHHHHHHHHhc--CCCCCCcCChhhEEECC
Confidence 65 2 236899999999999999997543 389999999999999999999973 26789999999999999
Q ss_pred CCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 676 KFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 676 ~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
++.+||+|||+++..........++..|+|||........ ++.++|||||||++|||+||+.||...+
T Consensus 159 ~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~k~Di~SlGvil~el~~g~~Pf~~~~ 226 (283)
T PHA02988 159 NYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSE-------YTIKDDIYSLGVVLWEIFTGKIPFENLT 226 (283)
T ss_pred CCcEEEcccchHhhhccccccccCcccccCHHHhhhcccc-------ccchhhhhHHHHHHHHHHHCCCCCCCCC
Confidence 9999999999998765544555678899999987542111 5889999999999999999999996543
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=315.94 Aligned_cols=182 Identities=17% Similarity=0.272 Sum_probs=160.2
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChh
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~ 618 (766)
.+-+|+|+.|.||+|++.+ +.||||+++.- -..+|+-|++|+|||||.+.|+|.+. ..++||||||+.|-|.
T Consensus 129 LeWlGSGaQGAVF~Grl~n-etVAVKKV~el------kETdIKHLRkLkH~NII~FkGVCtqs-PcyCIiMEfCa~GqL~ 200 (904)
T KOG4721|consen 129 LEWLGSGAQGAVFLGRLHN-ETVAVKKVREL------KETDIKHLRKLKHPNIITFKGVCTQS-PCYCIIMEFCAQGQLY 200 (904)
T ss_pred hhhhccCcccceeeeeccC-ceehhHHHhhh------hhhhHHHHHhccCcceeeEeeeecCC-ceeEEeeeccccccHH
Confidence 5779999999999999874 68999998532 23588999999999999999999874 4789999999999999
Q ss_pred hhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC--cc
Q 004248 619 SSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA--HQ 696 (766)
Q Consensus 619 ~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~--~~ 696 (766)
++|+..+ .+.-...+....+||.||.|||.+ +|||||||+-||||..+-.+||+|||.++...+.. -.
T Consensus 201 ~VLka~~-------~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMS 270 (904)
T KOG4721|consen 201 EVLKAGR-------PITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMS 270 (904)
T ss_pred HHHhccC-------ccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhh
Confidence 9997654 377777888999999999999998 99999999999999999999999999998875442 24
Q ss_pred ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 697 SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 697 ~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++||..|||||++.... +++|+||||||||||||+||..||.
T Consensus 271 FaGTVaWMAPEvIrneP---------csEKVDIwSfGVVLWEmLT~EiPYk 312 (904)
T KOG4721|consen 271 FAGTVAWMAPEVIRNEP---------CSEKVDIWSFGVVLWEMLTGEIPYK 312 (904)
T ss_pred hhhhHhhhCHHHhhcCC---------cccccceehhHHHHHHHHhcCCCcc
Confidence 68999999999997765 5899999999999999999999994
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=355.33 Aligned_cols=344 Identities=33% Similarity=0.567 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCCCCCCCCCCCCccceeec-CCCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCE
Q 004248 46 SSRTELAALFELRSSLGLR---RRDWPRKVDPCLVWNGVRCQ-NGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLAS 121 (766)
Q Consensus 46 ~~~~~~~aLl~~k~~l~~~---~~~W~~~~~~C~~W~gv~C~-~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 121 (766)
.+++|+.||++||+++.+. ..+|+...| ||.|.||+|+ .++|+.+++++.... |.. +..+..+++|+.
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~-~c~w~gv~c~~~~~v~~L~L~~~~i~--~~~-----~~~~~~l~~L~~ 97 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSAD-VCLWQGITCNNSSRVVSIDLSGKNIS--GKI-----SSAIFRLPYIQT 97 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCC-CCcCcceecCCCCcEEEEEecCCCcc--ccC-----ChHHhCCCCCCE
Confidence 3678999999999999642 468976555 5699999997 579999999975432 222 235667777777
Q ss_pred EecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCC
Q 004248 122 FNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS 201 (766)
Q Consensus 122 L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 201 (766)
|++++|.+.|.+|..++..+++|++|+|++|.+++.+|. +.+++|++|+|++|.+++.+|..++++++|++|+|++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 777777777777777664467777777777766665553 345556666666666555555555555566666666555
Q ss_pred CCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcc
Q 004248 202 LTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE 281 (766)
Q Consensus 202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 281 (766)
+++.+|..|+++++|++|+|++|.+++.+|..++++++|++|+|++|++++.+|..++++++|++|++++|++++.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcc------------------------cCCCCCC
Q 004248 282 LRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV------------------------LWSMPQL 337 (766)
Q Consensus 282 l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~------------------------l~~l~~L 337 (766)
++++++|++|++++|.+++.+|..+ ..+++|+.|+|++|.+++.+|.. +..+++|
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 5555555555555555555444332 34444555555555554444444 4444555
Q ss_pred CEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcC---CCCCCEEeccCCcCccccChhh
Q 004248 338 RLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV---LGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 338 ~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~---l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
+.|++++|++++.+|... ....+|+.|++++|.+.|.+|.. +++|+.|++++|++++.+|..+
T Consensus 335 ~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 555555555544444322 23345555555555555555432 3445556666666666665543
|
|
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=323.18 Aligned_cols=202 Identities=16% Similarity=0.181 Sum_probs=168.8
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
..++|+..+.||+|+||.||+|+. .+++.||+|+++.... ..+.+.+|+++++.++||||+++++++.+ ++..|
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~-~~~~~ 119 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD-DKYLY 119 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec-CCEEE
Confidence 346789999999999999999985 5789999999975322 23457899999999999999999986654 66899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++.+. .+++..+..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+
T Consensus 120 lv~Ey~~gg~L~~~l~~~--------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~ 188 (370)
T cd05596 120 MVMEYMPGGDLVNLMSNY--------DIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGT 188 (370)
T ss_pred EEEcCCCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccc
Confidence 999999999999998643 277888889999999999999997 999999999999999999999999999
Q ss_pred hhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 687 VCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 687 a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
++..... .....||+.|+|||.+.....+. .++.++|||||||++|||+||+.||....
T Consensus 189 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~-----~~~~~~DiwSlGvilyelltG~~Pf~~~~ 251 (370)
T cd05596 189 CMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDG-----YYGRECDWWSVGVFLYEMLVGDTPFYADS 251 (370)
T ss_pred eeeccCCCcccCCCCCCCcCeECHHHhccCCCCC-----CCCCceeeeehhHHHHHHHhCCCCcCCCC
Confidence 9765322 23456899999999875432111 15789999999999999999999996543
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=321.24 Aligned_cols=196 Identities=22% Similarity=0.342 Sum_probs=163.6
Q ss_pred CCCCccceeecCCcceEEEEEEcC--C---cEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG--G---IPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~--g---~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
++....++||+|+||.||+|.+.. + ..||||..+... .+..+|.+|+++|++++|||||+++|++.. +..
T Consensus 157 ~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~-~~P 235 (474)
T KOG0194|consen 157 SDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVL-EEP 235 (474)
T ss_pred cCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC-CCc
Confidence 344445899999999999999532 3 238999987422 235689999999999999999999999886 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
+|+|||+|+||+|.++|.+.+. .++..++..++.++|+||+|||++ ++|||||.++|+|++.++.+||+||
T Consensus 236 l~ivmEl~~gGsL~~~L~k~~~------~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDF 306 (474)
T KOG0194|consen 236 LMLVMELCNGGSLDDYLKKNKK------SLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDF 306 (474)
T ss_pred cEEEEEecCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCcc
Confidence 9999999999999999987653 499999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcCCCC--c-cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 685 SEVCAQGGDA--H-QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~~--~-~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
|+++...... . ....-..|.|||++..+. +++++|||||||++||+.+ |..||..
T Consensus 307 GLs~~~~~~~~~~~~~klPirWLAPEtl~~~~---------~s~kTDV~sfGV~~~Eif~~g~~Py~g 365 (474)
T KOG0194|consen 307 GLSRAGSQYVMKKFLKKLPIRWLAPETLNTGI---------FSFKTDVWSFGVLLWEIFENGAEPYPG 365 (474)
T ss_pred ccccCCcceeeccccccCcceecChhhhccCc---------cccccchhheeeeEEeeeccCCCCCCC
Confidence 9987643111 1 112234689999987664 6899999999999999999 8889843
|
|
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=321.27 Aligned_cols=206 Identities=16% Similarity=0.191 Sum_probs=172.3
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
.++....++|+..+.||+|+||.||+|+. .+++.||+|.+..... ..+.+.+|+++++.++||||+++++.+..
T Consensus 36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~- 114 (371)
T cd05622 36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD- 114 (371)
T ss_pred hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-
Confidence 34455567899999999999999999995 5688999999865322 13457899999999999999999987655
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
++..|+||||+++|+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++++||
T Consensus 115 ~~~~~lv~Ey~~gg~L~~~~~~~--------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL 183 (371)
T cd05622 115 DRYLYMVMEYMPGGDLVNLMSNY--------DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKL 183 (371)
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEE
Confidence 56899999999999999998643 278888899999999999999998 9999999999999999999999
Q ss_pred ccchhhhhcCCC----CccceeeecccCCCCCCCCce-eeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 682 GSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGSS-GMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 682 ~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~-g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+|||+++..... .....||+.|+|||.+..... +. ++.++|||||||++|||++|+.||...+
T Consensus 184 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~------~~~~~DiwSlGvilyell~G~~Pf~~~~ 251 (371)
T cd05622 184 ADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGY------YGRECDWWSVGVFLYEMLVGDTPFYADS 251 (371)
T ss_pred EeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCcc------CCCccceeehhHHHHHHHhCCCCCCCCC
Confidence 999999765322 234568999999998754321 11 5789999999999999999999996543
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=309.04 Aligned_cols=197 Identities=20% Similarity=0.257 Sum_probs=166.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...++||+|+||.||+|.. .+++.||+|+++.... ....+.+|++++++++||||+++++++.. ++..++|||
T Consensus 5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e 83 (288)
T cd07871 5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-ERCLTLVFE 83 (288)
T ss_pred ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-CCeEEEEEe
Confidence 5688899999999999999985 5789999999865432 24578899999999999999999997755 567999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ |+|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+|||+++++.+||+|||+++..
T Consensus 84 ~~~-~~l~~~l~~~~------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~ 153 (288)
T cd07871 84 YLD-SDLKQYLDNCG------NLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAK 153 (288)
T ss_pred CCC-cCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeec
Confidence 998 49999886543 2478999999999999999999997 9999999999999999999999999998764
Q ss_pred CC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......++..|+|||.+..... ++.++||||+||++|||+||+.||...
T Consensus 154 ~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~~l~~l~~g~~pf~~~ 207 (288)
T cd07871 154 SVPTKTYSNEVVTLWYRPPDVLLGSTE--------YSTPIDMWGVGCILYEMATGRPMFPGS 207 (288)
T ss_pred cCCCccccCceecccccChHHhcCCcc--------cCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 22 2234567899999998754321 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=312.73 Aligned_cols=198 Identities=19% Similarity=0.248 Sum_probs=166.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++...... ...+.+|++++++++||||+++++++.. ++..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv~ 82 (303)
T cd07869 4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHT-KETLTLVF 82 (303)
T ss_pred cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEec-CCeEEEEE
Confidence 46799999999999999999995 47899999998654322 4467899999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++ |+|.+++..... .+++..+..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++.
T Consensus 83 e~~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~ 152 (303)
T cd07869 83 EYVH-TDLCQYMDKHPG------GLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARA 152 (303)
T ss_pred ECCC-cCHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCccee
Confidence 9996 688888865432 388999999999999999999998 999999999999999999999999999875
Q ss_pred cCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ......+|+.|+|||.+..... ++.++||||+||++|||+||+.||...
T Consensus 153 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~~g~~pf~~~ 207 (303)
T cd07869 153 KSVPSHTYSNEVVTLWYRPPDVLLGSTE--------YSTCLDMWGVGCIFVEMIQGVAAFPGM 207 (303)
T ss_pred ccCCCccCCCCcccCCCCChHHHcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 432 2234567899999998754321 478899999999999999999999643
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.30 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=168.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+++. .+++.||||.+..... ..+.+.+|+.++..++||||+++++++.+ ++..|+|
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv 79 (331)
T cd05597 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQD-ENNLYLV 79 (331)
T ss_pred CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEec-CCeEEEE
Confidence 4788899999999999999994 5689999999975322 24568899999999999999999987665 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. ..+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~ 150 (331)
T cd05597 80 MDYYVGGDLLTLLSKFE------DRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCL 150 (331)
T ss_pred EecCCCCcHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCcee
Confidence 99999999999997532 2488999999999999999999998 99999999999999999999999999987
Q ss_pred hcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....+|+.|+|||.+.....+... ++.++|||||||++|||++|+.||...
T Consensus 151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~----~~~~~DiwslG~~l~el~~g~~Pf~~~ 211 (331)
T cd05597 151 RLLADGTVQSNVAVGTPDYISPEILQAMEDGKGR----YGPECDWWSLGVCMYEMLYGETPFYAE 211 (331)
T ss_pred ecCCCCCccccceeccccccCHHHHhhccccccC----CCCcceeehhhhHHHHHhhCCCCCCCC
Confidence 55322 1224689999999987542221111 578999999999999999999999654
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=312.91 Aligned_cols=196 Identities=20% Similarity=0.223 Sum_probs=169.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+++. .+|..||+|.+...... .+++.+|++++++++||||+++++++.. ++..++|||
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 83 (331)
T cd06649 5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICME 83 (331)
T ss_pred ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-CCEEEEEee
Confidence 5789999999999999999995 57889999998754322 4679999999999999999999998766 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.... .+++..+..++.|++.||+|||+. .+|+||||||+||++++++.+||+|||+++..
T Consensus 84 ~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~--~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 154 (331)
T cd06649 84 HMDGGSLDQVLKEAK-------RIPEEILGKVSIAVLRGLAYLREK--HQIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 154 (331)
T ss_pred cCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHhhc--CCEEcCCCChhhEEEcCCCcEEEccCcccccc
Confidence 999999999997543 388999999999999999999974 26999999999999999999999999998765
Q ss_pred C-CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 G-GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~-~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. .......++..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 155 ~~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~tg~~p~~~ 204 (331)
T cd06649 155 IDSMANSFVGTRSYMSPERLQGTH---------YSVQSDIWSMGLSLVELAIGRYPIPP 204 (331)
T ss_pred cccccccCCCCcCcCCHhHhcCCC---------CCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 3 2234456889999999876443 47899999999999999999999954
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=314.08 Aligned_cols=190 Identities=15% Similarity=0.138 Sum_probs=161.9
Q ss_pred ceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+.||+|+||.||+|. ..+|+.||+|.+..... ...++.+|++++++++||||+++++++.. ++..|+||||+++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~-~~~~~lv~E~~~~ 79 (325)
T cd05594 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-HDRLCFVMEYANG 79 (325)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEc-CCEEEEEEeCCCC
Confidence 469999999999998 46789999999975432 23567889999999999999999986655 5689999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
|+|.+++.+.+ .+++.++..++.|++.||+|||+ . +|+||||||+|||+++++.+||+|||+++...
T Consensus 80 ~~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~ 149 (325)
T cd05594 80 GELFFHLSRER-------VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 149 (325)
T ss_pred CcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCC
Confidence 99999886543 38999999999999999999996 5 89999999999999999999999999987532
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......+|..|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~tG~~Pf~~~ 199 (325)
T cd05594 150 GATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQ 199 (325)
T ss_pred CcccccccCCcccCCHHHHccCC---------CCCccccccccceeeeeccCCCCCCCC
Confidence 2223456899999999876543 467999999999999999999999544
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=318.22 Aligned_cols=197 Identities=20% Similarity=0.232 Sum_probs=170.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||+++.... ..+.+.+|+++++.++||||+++++++.+ ++..|+|
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv 79 (350)
T cd05573 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQD-EEHLYLV 79 (350)
T ss_pred CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheec-CCeEEEE
Confidence 4688899999999999999995 4789999999975432 24578899999999999999999987765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 80 ~e~~~~~~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~ 149 (350)
T cd05573 80 MEYMPGGDLMNLLIRKD-------VFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCK 149 (350)
T ss_pred EcCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCc
Confidence 99999999999997653 389999999999999999999997 99999999999999999999999999997
Q ss_pred hcCCC--------------------------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHH
Q 004248 689 AQGGD--------------------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPL 736 (766)
Q Consensus 689 ~~~~~--------------------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl 736 (766)
..... .....||..|+|||...... ++.++|||||||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il 220 (350)
T cd05573 150 KMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTP---------YGLECDWWSLGVIL 220 (350)
T ss_pred cCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCC---------CCCceeeEecchhh
Confidence 65322 22346899999999876553 57899999999999
Q ss_pred HHHhcCCCCCCCCc
Q 004248 737 FSAIFNNHLNLSSR 750 (766)
Q Consensus 737 ~elltG~~p~~~~~ 750 (766)
|||+||+.||....
T Consensus 221 ~ell~g~~Pf~~~~ 234 (350)
T cd05573 221 YEMLYGFPPFYSDT 234 (350)
T ss_pred hhhccCCCCCCCCC
Confidence 99999999996544
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=285.02 Aligned_cols=205 Identities=23% Similarity=0.271 Sum_probs=175.6
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEec----CCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMER----ENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~----~~~~~l 607 (766)
++|.+.+.+|+|||+.||.++ ..++..+|+|++.....+ .+..++|++.-++++||||+++++++... ..+.|+
T Consensus 21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yl 100 (302)
T KOG2345|consen 21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYL 100 (302)
T ss_pred ceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEE
Confidence 568899999999999999999 788999999999876643 67899999999999999999999987542 235899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
+++|...|+|.+.+.+... ....+++.+.+.|+.+|++||++||+. .|+.+||||||.|||+.+++.+++.|||.+
T Consensus 101 l~Pyy~~Gsl~d~i~~~k~---kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~ 176 (302)
T KOG2345|consen 101 LLPYYKRGSLLDEIERLKI---KGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSA 176 (302)
T ss_pred EeehhccccHHHHHHHHhh---cCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCc
Confidence 9999999999999976443 234699999999999999999999986 567999999999999999999999999988
Q ss_pred hhcC----C--------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQG----G--------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~~----~--------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... . +......|..|+|||.+....+.. +++++|||||||++|+|+.|..||+.
T Consensus 177 ~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~t------i~ertDIWSLGCtLYa~mf~~sPfe~ 243 (302)
T KOG2345|consen 177 TQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCT------ITERTDIWSLGCTLYAMMFGESPFER 243 (302)
T ss_pred cccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcc------cccccchhhhhHHHHHHHHcCCcchH
Confidence 6531 1 112345688999999887766555 79999999999999999999999954
|
|
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=310.91 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=161.7
Q ss_pred ceeecCCcceEEEEEE----cCCcEEEEEEeecccc-----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 540 NLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+.||+|+||.||+++. .+++.||||.++.... ....+.+|++++++++||||+++++++.. ++..|+|||
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-~~~~~lv~e 80 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQT-GGKLYLILE 80 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEec-CCeEEEEEe
Confidence 6899999999999984 3578999999975322 13467889999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+.+ .+.+..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++..
T Consensus 81 ~~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 150 (323)
T cd05584 81 YLSGGELFMHLEREG-------IFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKES 150 (323)
T ss_pred CCCCchHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeec
Confidence 999999999997543 378888999999999999999997 9999999999999999999999999998743
Q ss_pred C---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 G---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~G~~pf~~~ 203 (323)
T cd05584 151 IHEGTVTHTFCGTIEYMAPEILMRSG---------HGKAVDWWSLGALMYDMLTGAPPFTAE 203 (323)
T ss_pred ccCCCcccccCCCccccChhhccCCC---------CCCcceecccHHHHHHHhcCCCCCCCC
Confidence 1 2233456899999999876543 467999999999999999999999643
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.12 Aligned_cols=202 Identities=17% Similarity=0.174 Sum_probs=168.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||+++. .+++.||+|.+..... ..+.+.+|+.++..++|+||+++++++.+ ++..|+|
T Consensus 1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~-~~~~~lv 79 (331)
T cd05624 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQD-ENYLYLV 79 (331)
T ss_pred CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-CCEEEEE
Confidence 4788899999999999999995 5688999999965322 13458889999999999999999987654 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~Ey~~gg~L~~~l~~~~~------~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~ 150 (331)
T cd05624 80 MDYYVGGDLLTLLSKFED------RLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCL 150 (331)
T ss_pred EeCCCCCcHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEecccee
Confidence 999999999999976322 388999999999999999999997 99999999999999999999999999997
Q ss_pred hcCCCC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
...... ....||..|+|||.+.....+... ++.++|||||||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~----~~~~~DiwSlGvil~ell~g~~Pf~~~ 211 (331)
T cd05624 151 KMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGK----YGPECDWWSLGVCMYEMLYGETPFYAE 211 (331)
T ss_pred eccCCCceeeccccCCcccCCHHHHhccccCCCC----CCCcccEEeeehhhhhhhhCCCCccCC
Confidence 653321 234689999999987542211111 578999999999999999999999644
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=312.22 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=164.5
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV 608 (766)
+|+..+.||+|+||.||+|+. .+++.||||.+..... ..+.+..|.+++..+ +||+|+++++++.. .+..|+|
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv 79 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQT-MDRLYFV 79 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEec-CCEEEEE
Confidence 578889999999999999985 4678999999975432 134577788888887 57888888886654 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++
T Consensus 80 ~E~~~~g~L~~~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~ 149 (323)
T cd05616 80 MEYVNGGDLMYQIQQVG-------RFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred EcCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCce
Confidence 99999999999987543 389999999999999999999997 99999999999999999999999999987
Q ss_pred hcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .......||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvil~elltg~~Pf~~~ 204 (323)
T cd05616 150 ENMWDGVTTKTFCGTPDYIAPEIIAYQP---------YGKSVDWWAFGVLLYEMLAGQAPFEGE 204 (323)
T ss_pred ecCCCCCccccCCCChhhcCHHHhcCCC---------CCCccchhchhHHHHHHHhCCCCCCCC
Confidence 542 1233456899999999886544 478999999999999999999999643
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=270.75 Aligned_cols=210 Identities=19% Similarity=0.226 Sum_probs=179.2
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..++||+|.||+||||+ +++++.||+|+++.+... ....+||+.+++.++|+|||++++.... ++..-+|+|
T Consensus 3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs-dkkltlvfe 81 (292)
T KOG0662|consen 3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-DKKLTLVFE 81 (292)
T ss_pred chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc-CceeEEeHH
Confidence 46778999999999999999 778999999999765432 5678999999999999999999996654 678999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||.. +|..+...-.+ .++.+....++.|+.+||.|+|++ .+.|||+||.|.||+.+|+.|++|||+|+..
T Consensus 82 ~cdq-dlkkyfdslng------~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglaraf 151 (292)
T KOG0662|consen 82 FCDQ-DLKKYFDSLNG------DLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAF 151 (292)
T ss_pred HhhH-HHHHHHHhcCC------cCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhc
Confidence 9975 88888764332 488899999999999999999998 8999999999999999999999999999987
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEE
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLC 763 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~ 763 (766)
+-+ .+..+.|.||++|.++.+... |++..|+||-|||+.|+...-.|.+++..-++|++.|.+++
T Consensus 152 gipvrcysaevvtlwyrppdvlfgakl--------y~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~l 219 (292)
T KOG0662|consen 152 GIPVRCYSAEVVTLWYRPPDVLFGAKL--------YSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLL 219 (292)
T ss_pred CCceEeeeceeeeeeccCcceeeeeeh--------hccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHh
Confidence 644 345578999999998876544 68899999999999999987778877777777777765543
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=312.79 Aligned_cols=201 Identities=19% Similarity=0.218 Sum_probs=176.4
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|...+.+|+|+||.++..+ ..+++.+|+|++...... ++...+|+.++++++|||||...+.+.+++...+|||
T Consensus 4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm 83 (426)
T KOG0589|consen 4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM 83 (426)
T ss_pred chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence 568889999999999999887 456789999999765543 4578899999999999999999998877443399999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||+||++.+.|.+.++ ..++++++..++.|++.|+.|||++ +|+|||||+.||+++.+..+||+|||+|+.
T Consensus 84 ~Y~eGg~l~~~i~~~k~-----~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~ 155 (426)
T KOG0589|consen 84 EYCEGGDLAQLIKEQKG-----VLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKI 155 (426)
T ss_pred eecCCCCHHHHHHHHhh-----ccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhh
Confidence 99999999999987653 4589999999999999999999987 999999999999999999999999999998
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
...+ ..+.+||+.|+.||.+....| +.|+||||+||++|||++-|++|...+.
T Consensus 156 l~~~~~~a~tvvGTp~YmcPEil~d~pY---------n~KSDiWsLGC~~yEm~~lk~aF~a~~m 211 (426)
T KOG0589|consen 156 LNPEDSLASTVVGTPYYMCPEILSDIPY---------NEKSDIWSLGCCLYEMCTLKPAFKASNM 211 (426)
T ss_pred cCCchhhhheecCCCcccCHHHhCCCCC---------CccCcchhhcchHHHHHhcccccCccch
Confidence 8543 466789999999999987775 5799999999999999999999965443
|
|
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=311.05 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=163.9
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCC-CcccceeEEEecCCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHA-RLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~-niv~l~~~~~~~~~~~~lV 608 (766)
+|+..+.||+|+||.||+|+. .+++.||||++..... ..+.+..|.+++..++|+ +|+++++++.. .+..|+|
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv 79 (324)
T cd05587 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-MDRLYFV 79 (324)
T ss_pred CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-CCEEEEE
Confidence 578889999999999999985 4678999999975432 245788999999999775 47777775544 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++
T Consensus 80 ~E~~~~g~L~~~~~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~ 149 (324)
T cd05587 80 MEYVNGGDLMYHIQQVG-------KFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCK 149 (324)
T ss_pred EcCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcce
Confidence 99999999999997543 388999999999999999999997 99999999999999999999999999987
Q ss_pred hc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ........||..|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslGvil~elltG~~pf~~~ 204 (324)
T cd05587 150 ENIFGGKTTRTFCGTPDYIAPEIIAYQP---------YGKSVDWWAFGVLLYEMLAGQPPFDGE 204 (324)
T ss_pred ecCCCCCceeeecCCccccChhhhcCCC---------CCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 53 12233456899999999886544 467999999999999999999999543
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=312.73 Aligned_cols=202 Identities=18% Similarity=0.179 Sum_probs=167.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||.||+++. .+++.||+|.+..... ..+.|.+|+.++..++|+||+++++++.+ ++..|+|
T Consensus 1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv 79 (332)
T cd05623 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQD-ENNLYLV 79 (332)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEec-CCEEEEE
Confidence 4688899999999999999995 4578999999864322 13458899999999999999999986654 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++++... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 80 ~ey~~~g~L~~~l~~~~~------~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~ 150 (332)
T cd05623 80 MDYYVGGDLLTLLSKFED------RLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCL 150 (332)
T ss_pred EeccCCCcHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchhe
Confidence 999999999999976332 489999999999999999999997 99999999999999999999999999987
Q ss_pred hcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....||+.|+|||.+.....+... ++.++|||||||++|||++|+.||...
T Consensus 151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~----~~~~~DvwSlGvil~ell~g~~Pf~~~ 211 (332)
T cd05623 151 KLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGK----YGPECDWWSLGVCMYEMLYGETPFYAE 211 (332)
T ss_pred ecccCCcceecccccCccccCHHHHhccccCCCC----CCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence 54221 1234689999999987532211111 578999999999999999999999644
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.76 Aligned_cols=194 Identities=22% Similarity=0.289 Sum_probs=169.7
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.|...+.||+|+||.||||. ..+++.||+|.++..... .++..+|+.++.+++|+||.+.|+.+.. +..++++|||
T Consensus 14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~-g~~LwiiMey 92 (467)
T KOG0201|consen 14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLK-GTKLWIIMEY 92 (467)
T ss_pred ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheee-cccHHHHHHH
Confidence 46677899999999999999 567999999999876554 5689999999999999999999997776 5679999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|.||++.+.+.... .+++....-|.+++..|+.|||++ +.||||||+.|||+..+|.+|++|||++....
T Consensus 93 ~~gGsv~~lL~~~~-------~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~ 162 (467)
T KOG0201|consen 93 CGGGSVLDLLKSGN-------ILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLT 162 (467)
T ss_pred hcCcchhhhhccCC-------CCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeee
Confidence 99999999997543 247777788999999999999998 99999999999999999999999999987653
Q ss_pred C---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 G---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. ...+.+||++|||||++.... |+.|+||||+|++.+||++|.+|+..
T Consensus 163 ~~~~rr~tfvGTPfwMAPEVI~~~~---------Y~~KADIWSLGITaiEla~GePP~s~ 213 (467)
T KOG0201|consen 163 NTVKRRKTFVGTPFWMAPEVIKQSG---------YDTKADIWSLGITAIELAKGEPPHSK 213 (467)
T ss_pred chhhccccccccccccchhhhcccc---------ccchhhhhhhhHHHHHHhcCCCCCcc
Confidence 2 236789999999999997443 47899999999999999999999853
|
|
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=312.15 Aligned_cols=195 Identities=17% Similarity=0.129 Sum_probs=164.7
Q ss_pred CCCccceeecCCcceEEEEEE----cCCcEEEEEEeecccc-----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 535 DFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
+|+..+.||+|+||.||+++. .+++.||+|.+..... ..+.+.+|+++++++ +||||+++++++.. ++.
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~-~~~ 79 (332)
T cd05614 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT-EAK 79 (332)
T ss_pred CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec-CCE
Confidence 478889999999999999974 3688999999965321 145688999999999 59999999986654 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.++||||+++|+|.+++.++. .+++.+...++.||+.||+|||+. +|+||||||+|||++.++.+||+||
T Consensus 80 ~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Df 149 (332)
T cd05614 80 LHLILDYVSGGEMFTHLYQRD-------NFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDF 149 (332)
T ss_pred EEEEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeC
Confidence 999999999999999997643 389999999999999999999997 9999999999999999999999999
Q ss_pred hhhhhcCC----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGG----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+++.... ......||..|+|||.+..... ++.++|||||||++|||+||+.||..
T Consensus 150 G~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~elltg~~pf~~ 209 (332)
T cd05614 150 GLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGG--------HGKAVDWWSLGILIFELLTGASPFTL 209 (332)
T ss_pred cCCccccccCCCccccccCCccccCHHHhcCCCC--------CCCccccccchhhhhhhhcCCCCCCC
Confidence 99976421 1223568999999998754321 46799999999999999999999953
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=313.83 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=169.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||+++.... ..+.+.+|+++++.++||||+++++++.+ ++..|+|
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~-~~~~~lv 79 (330)
T cd05601 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQD-KDNLYLV 79 (330)
T ss_pred CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEec-CCeEEEE
Confidence 4688899999999999999984 5789999999976433 24568899999999999999999987655 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 80 ~e~~~~~~L~~~l~~~~~------~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~ 150 (330)
T cd05601 80 MEYQPGGDLLSLLNRYED------QFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAA 150 (330)
T ss_pred ECCCCCCCHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCe
Confidence 999999999999976532 489999999999999999999997 99999999999999999999999999997
Q ss_pred hcCCC----CccceeeecccCCCCCCCCcee-eeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD----AHQSRITRLLRLPQSSEQGSSG-MVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~----~~~~~~t~~y~aPe~~~~~~~g-~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....+|..|+|||.+...... .. .++.++|||||||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~----~~~~~~DiwslG~il~el~~g~~Pf~~~ 212 (330)
T cd05601 151 RLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKG----TYGVECDWWSLGVIAYEMIYGRSPFHEG 212 (330)
T ss_pred ECCCCCceeeecccCCccccCHHHhccccccccC----CCCCcceeecccceeeeeccCCCCCCCC
Confidence 65322 1223578999999986532111 11 1578999999999999999999999644
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=310.95 Aligned_cols=188 Identities=18% Similarity=0.166 Sum_probs=161.7
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||||.++..... .+.+.+|..++.++ +||||+++++++.. ++..|+|||||+
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~-~~~~~lv~e~~~ 79 (329)
T cd05588 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQT-ESRLFFVIEFVS 79 (329)
T ss_pred CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEc-CCEEEEEEeCCC
Confidence 4799999999999985 57899999999764322 34588899999998 79999999997655 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ--- 690 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~--- 690 (766)
+|+|.+++.+.+ .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++..
T Consensus 80 ~g~L~~~~~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~ 149 (329)
T cd05588 80 GGDLMFHMQRQR-------KLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRP 149 (329)
T ss_pred CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccC
Confidence 999999886543 389999999999999999999997 9999999999999999999999999998753
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
........||..|+|||.+.... ++.++|||||||++|||+||+.||.
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~~l~el~~g~~Pf~ 197 (329)
T cd05588 150 GDTTSTFCGTPNYIAPEILRGED---------YGFSVDWWALGVLMFEMMAGRSPFD 197 (329)
T ss_pred CCccccccCCccccCHHHHcCCC---------CCCccceechHHHHHHHHHCCCCcc
Confidence 22234457899999999886544 4679999999999999999999995
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=310.28 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=160.7
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||+|.++..... .+.+.+|+.++.++ +|||||++++++.. ++..|+||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-~~~~~lv~E~~~ 79 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-ESRLFFVIEYVN 79 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEe-CCEEEEEEeCCC
Confidence 4799999999999994 56889999999764322 34578899998877 79999999997655 578999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|..++.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 80 ~~~L~~~~~~~~-------~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~ 149 (329)
T cd05618 80 GGDLMFHMQRQR-------KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 149 (329)
T ss_pred CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCC
Confidence 999998886543 389999999999999999999997 99999999999999999999999999987531
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
.......||..|+|||.+.... ++.++|||||||++|||+||+.||.
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~Pf~ 197 (329)
T cd05618 150 GDTTSTFCGTPNYIAPEILRGED---------YGFSVDWWALGVLMFEMMAGRSPFD 197 (329)
T ss_pred CCccccccCCccccCHHHHcCCC---------CCCccceecccHHHHHHhhCCCCCc
Confidence 2233456899999999886544 4679999999999999999999994
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=335.24 Aligned_cols=199 Identities=24% Similarity=0.379 Sum_probs=166.5
Q ss_pred CCccceeecCCcceEEEEEEcC--C----cEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGILEG--G----IPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~--g----~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.+..+.||+|+||.||+|...+ | ..||||.++.... +..+|.+|..+|++++|||||+++|+|.+ ....++
T Consensus 694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~-~~~~~i 772 (1025)
T KOG1095|consen 694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD-SGPPLI 772 (1025)
T ss_pred eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC-CCCcEE
Confidence 4456889999999999999543 3 3599999976543 35689999999999999999999999998 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
++|||++|||..+|++.+........++..+.+.++.|||+|+.||+++ ++|||||.++|+||++...+||+|||+|
T Consensus 773 ~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGlA 849 (1025)
T KOG1095|consen 773 LLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGLA 849 (1025)
T ss_pred EehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccchh
Confidence 9999999999999987644333345699999999999999999999998 9999999999999999999999999999
Q ss_pred hhcC-CCCccce----eeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 688 CAQG-GDAHQSR----ITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 688 ~~~~-~~~~~~~----~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
+.+. .+..... --.-|||||.+..+. +|+|+|||||||++||++| |..||.
T Consensus 850 rDiy~~~yyr~~~~a~lPvkWm~PEsl~d~i---------FtskSDvWsFGVllWEifslG~~PY~ 906 (1025)
T KOG1095|consen 850 RDIYDKDYYRKHGEAMLPVKWMPPESLKDGI---------FTSKSDVWSFGVLLWEIFSLGATPYP 906 (1025)
T ss_pred HhhhhchheeccCccccceecCCHHHHhhcc---------cccccchhhhHHHHHHHHhCCCCCCC
Confidence 9542 2221111 123589999886543 6899999999999999999 888983
|
|
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=309.74 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=161.2
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||||.+..... ..+.+..|.+++..+ +||||+++++++.. ++..|+||||++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~-~~~~~lv~E~~~ 79 (321)
T cd05591 1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQT-KDRLFFVMEYVN 79 (321)
T ss_pred CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-CCeEEEEEeCCC
Confidence 4699999999999985 5688999999975432 235678899999876 79999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|..++.+.+ .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++...
T Consensus 80 ~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~ 149 (321)
T cd05591 80 GGDLMFQIQRSR-------KFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILN 149 (321)
T ss_pred CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccC
Confidence 999999987543 389999999999999999999998 99999999999999999999999999987532
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslG~il~el~tg~~Pf~~~ 199 (321)
T cd05591 150 GVTTTTFCGTPDYIAPEILQELE---------YGPSVDWWALGVLMYEMMAGQPPFEAD 199 (321)
T ss_pred CccccccccCccccCHHHHcCCC---------CCCccceechhHHHHHHhcCCCCCCCC
Confidence 2233456899999999875443 478999999999999999999999644
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=308.80 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=159.2
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHH-HHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELD-FFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||+||+|+. .+|+.||||++...... .+++.+|.. +++.++||||+++++++.. .+..|+||||++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~-~~~~~lv~e~~~ 79 (323)
T cd05575 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-ADKLYFVLDYVN 79 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEe-CCEEEEEEcCCC
Confidence 4699999999999995 57999999999754321 334556655 5678999999999987765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|.+++.+.. .+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++...
T Consensus 80 ~g~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~ 149 (323)
T cd05575 80 GGELFFHLQRER-------SFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEH 149 (323)
T ss_pred CCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccC
Confidence 999999987543 388999999999999999999997 99999999999999999999999999987531
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......||..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslG~il~ell~g~~pf~~~ 199 (323)
T cd05575 150 SKTTSTFCGTPEYLAPEVLRKQP---------YDRTVDWWCLGAVLYEMLYGLPPFYSR 199 (323)
T ss_pred CCccccccCChhhcChhhhcCCC---------CCccccccccchhhhhhhcCCCCCCCC
Confidence 2233456899999999876543 478999999999999999999999644
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=312.50 Aligned_cols=195 Identities=23% Similarity=0.295 Sum_probs=169.3
Q ss_pred CCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|.+.+.||.|+||.||-|+ ..+...||||++.....+ .+++..|++.|++++|||+|...|+|.. +...|||||
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-e~TaWLVME 106 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-EHTAWLVME 106 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-cchHHHHHH
Confidence 6778999999999999999 567889999999764433 5689999999999999999999996654 668999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||- |+-.|++.-.+ .++.+-.+..|+.|++.||+|||++ +.||||||+.|||+++.|.+|++|||.|...
T Consensus 107 YCl-GSAsDlleVhk------KplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~ 176 (948)
T KOG0577|consen 107 YCL-GSASDLLEVHK------KPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIM 176 (948)
T ss_pred HHh-ccHHHHHHHHh------ccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhc
Confidence 997 57777775433 2488889999999999999999998 8999999999999999999999999998765
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.+..+++||++|||||++..-..|. |+-|+||||+|++..|++-.|+|.+.
T Consensus 177 -~PAnsFvGTPywMAPEVILAMDEGq------YdgkvDvWSLGITCIELAERkPPlFn 227 (948)
T KOG0577|consen 177 -APANSFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFN 227 (948)
T ss_pred -CchhcccCCccccchhHheeccccc------cCCccceeeccchhhhhhhcCCCccC
Confidence 4566789999999999887655554 78899999999999999999999853
|
|
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=309.11 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=161.9
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHH---hhcCCCCcccceeEEEecCCcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFF---SKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l---~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
|+..+.||+|+||.||+|.. .+++.||||+++.... ..+.+.+|++++ ++++||||+++++++.. .+..|+
T Consensus 1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~-~~~~~l 79 (324)
T cd05589 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQT-EDHVCF 79 (324)
T ss_pred CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEc-CCEEEE
Confidence 56678999999999999984 5789999999975431 134567776655 56789999999997655 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|..++++. .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++
T Consensus 80 v~E~~~~~~L~~~~~~~--------~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~ 148 (324)
T cd05589 80 VMEYAAGGDLMMHIHTD--------VFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLC 148 (324)
T ss_pred EEcCCCCCcHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCC
Confidence 99999999999888532 389999999999999999999997 9999999999999999999999999998
Q ss_pred hhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+... .......++..|+|||.+.... ++.++|||||||++|||++|+.||...
T Consensus 149 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~G~~pf~~~ 204 (324)
T cd05589 149 KEGMGFGDRTSTFCGTPEFLAPEVLTETS---------YTRAVDWWGLGVLIYEMLVGESPFPGD 204 (324)
T ss_pred ccCCCCCCcccccccCccccCHhHhcCCC---------CCcccchhhHHHHHHHHHhCCCCCCCC
Confidence 7532 2233456899999999876543 467999999999999999999999643
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=309.15 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=161.3
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||||++..... ..+.+.+|.+++..+ +||||+++++++.. .+..|+||||++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-~~~~~iv~Ey~~ 79 (320)
T cd05590 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQT-PDRLFFVMEFVN 79 (320)
T ss_pred CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEc-CCEEEEEEcCCC
Confidence 4799999999999995 5689999999975421 245678899998877 69999999996654 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++...
T Consensus 80 ~g~L~~~i~~~~-------~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~ 149 (320)
T cd05590 80 GGDLMFHIQKSR-------RFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFN 149 (320)
T ss_pred CchHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcC
Confidence 999999987543 389999999999999999999997 99999999999999999999999999987531
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......||+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~Pf~~~ 199 (320)
T cd05590 150 GKTTSTFCGTPDYIAPEILQEML---------YGPSVDWWAMGVLLYEMLCGHAPFEAE 199 (320)
T ss_pred CCcccccccCccccCHHHHcCCC---------CCCccchhhhHHHHHHHhhCCCCCCCC
Confidence 2233456899999999876443 467999999999999999999999644
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=307.84 Aligned_cols=189 Identities=18% Similarity=0.220 Sum_probs=159.0
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||||.++.... ..+.+..|.+++... +||||+++++++.. ++..|+||||++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~-~~~~~lv~e~~~ 79 (316)
T cd05592 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQT-KEHLFFVMEYLN 79 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEc-CCEEEEEEcCCC
Confidence 4699999999999995 5688999999975432 234566777777654 89999999987655 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|.+++.... .+++.+...++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 80 gg~L~~~~~~~~-------~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~ 149 (316)
T cd05592 80 GGDLMFHIQSSG-------RFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNG 149 (316)
T ss_pred CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCC
Confidence 999999987543 388999999999999999999997 99999999999999999999999999997542
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.......||..|+|||...... ++.++|||||||++|||++|+.||..
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslG~il~ell~G~~Pf~~ 198 (316)
T cd05592 150 EGKASTFCGTPDYIAPEILKGQK---------YNESVDWWSFGVLLYEMLIGQSPFHG 198 (316)
T ss_pred CCccccccCCccccCHHHHcCCC---------CCCcccchhHHHHHHHHHhCCCCCCC
Confidence 2233456899999999876543 46899999999999999999999954
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=308.34 Aligned_cols=190 Identities=18% Similarity=0.201 Sum_probs=158.5
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHH-HHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELD-FFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||+|.+..... ...++.+|.. +++.++|||||++++++.+ .+..|+||||++
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~-~~~~~lv~e~~~ 79 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQT-AEKLYFVLDYVN 79 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEc-CCEEEEEEcCCC
Confidence 4799999999999995 5689999999975432 1345666654 6788999999999987655 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|...+.+.. .+++.+...++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 80 ~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~ 149 (321)
T cd05603 80 GGELFFHLQRER-------CFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEP 149 (321)
T ss_pred CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCC
Confidence 999998886543 378888999999999999999987 99999999999999999999999999987531
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......+|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~pf~~~ 199 (321)
T cd05603 150 EETTSTFCGTPEYLAPEVLRKEP---------YDRTVDWWCLGAVLYEMLYGLPPFYSR 199 (321)
T ss_pred CCccccccCCcccCCHHHhcCCC---------CCCcCcccccchhhhhhhcCCCCCCCC
Confidence 2233456889999999875443 478999999999999999999999654
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=303.66 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=164.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+. .+++.||||++..... ..+.+.+|++++++++||||+++++++.. ++..|+||
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~ 79 (287)
T cd07848 1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-RGKLYLVF 79 (287)
T ss_pred CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-CCEEEEEE
Confidence 4688899999999999999996 4688999999975432 24678899999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++++.+..+.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 80 e~~~~~~l~~~~~~~-------~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~ 149 (287)
T cd07848 80 EYVEKNMLELLEEMP-------NGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARN 149 (287)
T ss_pred ecCCCCHHHHHHhcC-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCccc
Confidence 999987766544322 2489999999999999999999987 999999999999999999999999999986
Q ss_pred cCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||...... ++.++|||||||++|||++|+.||..
T Consensus 150 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwslGvil~el~~g~~pf~~ 203 (287)
T cd07848 150 LSEGSNANYTEYVATRWYRSPELLLGAP---------YGKAVDMWSVGCILGELSDGQPLFPG 203 (287)
T ss_pred ccccccccccccccccccCCcHHHcCCC---------CCCchhHHhHHHHHHHHHhCCCCCCC
Confidence 5321 22346789999999876543 46899999999999999999999954
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=276.23 Aligned_cols=217 Identities=16% Similarity=0.188 Sum_probs=177.0
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc--CHHHHHHHHHHHhh-cCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSK-VSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~-l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++......||+|+||.|-+.+ ..+|+..|||++...-. .+++.++|+.+..+ ...|.+|+++|.+++ +..+++.
T Consensus 45 ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r-egdvwIc 123 (282)
T KOG0984|consen 45 ADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR-EGDVWIC 123 (282)
T ss_pred hhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc-cccEEEe
Confidence 3445556789999999999888 57899999999976433 25678889986555 479999999998776 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||.|+- +|+.+-++--. ....+++.-.-+||..|.+||.|||++ ..|||||+||+||||+.+|++|+||||++-
T Consensus 124 ME~M~t-Sldkfy~~v~~---~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG 197 (282)
T KOG0984|consen 124 MELMDT-SLDKFYRKVLK---KGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISG 197 (282)
T ss_pred HHHhhh-hHHHHHHHHHh---cCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEcccccce
Confidence 999985 88776543111 113588999999999999999999997 689999999999999999999999999987
Q ss_pred hcCCCC-cc-ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEE
Q 004248 689 AQGGDA-HQ-SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIK 761 (766)
Q Consensus 689 ~~~~~~-~~-~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~ 761 (766)
.+.++. .+ ..|...|||||.+..+.... + |+.|+||||+|+.+.||++++.|++.+..+.+|+.++++
T Consensus 198 ~L~dSiAkt~daGCkpYmaPEri~~e~n~~-g----Y~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVe 267 (282)
T KOG0984|consen 198 YLVDSIAKTMDAGCKPYMAPERINPELNQK-G----YSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVE 267 (282)
T ss_pred eehhhhHHHHhcCCCccCChhhcCcccCcc-c----ceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhc
Confidence 764432 22 46788999999887764332 2 688999999999999999999999999999888877653
|
|
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=306.96 Aligned_cols=190 Identities=19% Similarity=0.220 Sum_probs=160.7
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.||+|+||+||+|+. .+++.||||.++.... ..+.+..|..++... +||||+++++++.+ ++..|+||||++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~-~~~~~lv~ey~~ 79 (316)
T cd05619 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQT-KENLFFVMEYLN 79 (316)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEe-CCEEEEEEeCCC
Confidence 4699999999999995 5688999999976432 244577788888764 89999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ--- 690 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~--- 690 (766)
+|+|.+++.+.. .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++..
T Consensus 80 ~g~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 149 (316)
T cd05619 80 GGDLMFHIQSCH-------KFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLG 149 (316)
T ss_pred CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCC
Confidence 999999997543 388999999999999999999997 9999999999999999999999999998753
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
........+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslG~il~el~~G~~pf~~~ 199 (316)
T cd05619 150 DAKTCTFCGTPDYIAPEILLGQK---------YNTSVDWWSFGVLLYEMLIGQSPFHGH 199 (316)
T ss_pred CCceeeecCCccccCHHHHcCCC---------CCchhhhhhHHHHHHHHHhCCCCCCCC
Confidence 12233456889999999876543 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=311.79 Aligned_cols=196 Identities=18% Similarity=0.218 Sum_probs=163.3
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC----CcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE----NEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~~ 606 (766)
+|+..+.||+|+||.||+|+. .+|+.||||++..... ...++.+|++++++++||||+++++++.... ...|
T Consensus 1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 80 (338)
T cd07859 1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY 80 (338)
T ss_pred CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence 477889999999999999994 5789999999864322 2456889999999999999999999775422 2479
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|||||+ ++|.+++.+.. .+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 81 lv~e~~~-~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~ 149 (338)
T cd07859 81 VVFELME-SDLHQVIKAND-------DLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGL 149 (338)
T ss_pred EEEecCC-CCHHHHHHhcc-------cCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCcc
Confidence 9999996 69999886543 389999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
++..... .....+|+.|+|||.+...... ++.++|||||||++|||+||+.||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~-------~~~~~DvwSlGvvl~el~tg~~pf~~ 210 (338)
T cd07859 150 ARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSK-------YTPAIDIWSIGCIFAEVLTGKPLFPG 210 (338)
T ss_pred ccccccccCccccccCCCCCCCcCCHHHHhccccc-------cCchhHHHHHHHHHHHHHcCCCCCCC
Confidence 9754211 1234689999999986542111 57899999999999999999999954
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=308.23 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=163.2
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCC-CCcccceeEEEecCCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSH-ARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H-~niv~l~~~~~~~~~~~~lV 608 (766)
+|+..++||+|+||.||+|+. .+|+.||||.+..... ..+.+..|.++++.+.| ++|+++++++.. ++..|+|
T Consensus 1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv 79 (323)
T cd05615 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQT-VDRLYFV 79 (323)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEec-CCEEEEE
Confidence 467789999999999999984 5789999999975432 23567889999998865 667778775544 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++
T Consensus 80 ~Ey~~~g~L~~~i~~~~-------~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~ 149 (323)
T cd05615 80 MEYVNGGDLMYHIQQVG-------KFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred EcCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEecccccc
Confidence 99999999999987543 389999999999999999999997 99999999999999999999999999987
Q ss_pred hcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ......||..|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslGvil~elltG~~pf~~~ 204 (323)
T cd05615 150 EHMVDGVTTRTFCGTPDYIAPEIIAYQP---------YGKSVDWWAYGVLLYEMLAGQPPFDGE 204 (323)
T ss_pred ccCCCCccccCccCCccccCHHHHcCCC---------CCCccchhhhHHHHHHHHhCCCCCCCC
Confidence 5421 223346889999999876543 478999999999999999999999644
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=306.50 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=160.9
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+|+.||||.++.... ..+.+..|.+++... +||||+++++++.. ++..|+||||++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv~E~~~ 79 (316)
T cd05620 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQT-KEHLFFVMEFLN 79 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEe-CCEEEEEECCCC
Confidence 4799999999999995 5689999999976432 244577788888765 89999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ--- 690 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~--- 690 (766)
+|+|.+++.++. .+++.++..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+++..
T Consensus 80 ~g~L~~~i~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 149 (316)
T cd05620 80 GGDLMFHIQDKG-------RFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFG 149 (316)
T ss_pred CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccC
Confidence 999999987543 388999999999999999999997 9999999999999999999999999998743
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
........||..|+|||.+.... ++.++||||+||++|||++|+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslGvil~el~~g~~Pf~~~ 199 (316)
T cd05620 150 DNRASTFCGTPDYIAPEILQGLK---------YTFSVDWWSFGVLLYEMLIGQSPFHGD 199 (316)
T ss_pred CCceeccCCCcCccCHHHHcCCC---------CCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 22234456899999999886544 468999999999999999999999543
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=308.21 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=168.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|.. .++..||+|.+...... .+++.+|++++++++|||||+++++|.+ ++..++|||
T Consensus 5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 83 (333)
T cd06650 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICME 83 (333)
T ss_pred hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEE-CCEEEEEEe
Confidence 6789999999999999999995 46889999988754322 4679999999999999999999998876 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+.+ .+++.....++.|++.||+|||+. .+|+||||||+|||+++++.+||+|||+++..
T Consensus 84 ~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~l~~~l~~lH~~--~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~ 154 (333)
T cd06650 84 HMDGGSLDQVLKKAG-------RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 154 (333)
T ss_pred cCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChhhEEEcCCCCEEEeeCCcchhh
Confidence 999999999997543 378999999999999999999974 26999999999999999999999999998765
Q ss_pred CC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......++..|+|||...+.. ++.++|||||||++|||++|+.||...
T Consensus 155 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~il~~l~~g~~p~~~~ 205 (333)
T cd06650 155 IDSMANSFVGTRSYMSPERLQGTH---------YSVQSDIWSMGLSLVEMAIGRYPIPPP 205 (333)
T ss_pred hhhccccCCCCccccCHHHhcCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 32 233446788999999876443 467999999999999999999999643
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=308.73 Aligned_cols=191 Identities=19% Similarity=0.196 Sum_probs=160.0
Q ss_pred ceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHH-HHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELD-FFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+ ..+|+.||||++..... ..+++.+|.. +++.++||||+++++++.. ++..|+||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~-~~~~~lv~e~~~ 79 (325)
T cd05604 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-TEKLYFVLDFVN 79 (325)
T ss_pred CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEec-CCEEEEEEcCCC
Confidence 469999999999998 45789999999975422 1345666665 4677999999999987765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|.+++.+.. .+++.++..++.||+.||+|||+. +|+||||||+|||+++++.+||+|||+++...
T Consensus 80 ~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~ 149 (325)
T cd05604 80 GGELFFHLQRER-------SFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQ 149 (325)
T ss_pred CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCC
Confidence 999999886543 389999999999999999999997 99999999999999999999999999987531
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.......||..|+|||.+.... ++.++|||||||++|||++|+.||...+
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslG~il~el~~G~~pf~~~~ 200 (325)
T cd05604 150 SDTTTTFCGTPEYLAPEVIRKQP---------YDNTVDWWCLGAVLYEMLYGLPPFYCRD 200 (325)
T ss_pred CCCcccccCChhhCCHHHHcCCC---------CCCcCccccccceehhhhcCCCCCCCCC
Confidence 2233456899999999876544 4679999999999999999999996543
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.76 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=167.3
Q ss_pred CCCccceeecCCcceEEEEEEcCC-cEEEEEEeeccccC-HHHHHHHHHHHhhcC-CCCccccee-EEEec--C---CcE
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGG-IPVVIKRIDLQSVK-TEAYLLELDFFSKVS-HARLVPLLG-HCMER--E---NEK 605 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g-~~vavK~l~~~~~~-~~~~~~E~~~l~~l~-H~niv~l~~-~~~~~--~---~~~ 605 (766)
++.+.+.|.+|||+.||.|....+ ..||+|++-..... .+...+||++|++|+ |||||.+++ ..... . -++
T Consensus 38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Ev 117 (738)
T KOG1989|consen 38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEV 117 (738)
T ss_pred EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEE
Confidence 345678999999999999996655 99999998655433 677899999999997 999999999 33221 1 268
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
+|.||||+||.|-+++..+.. ..|++.++++|+.|+++|+++||. +.|+|||||||.|||||+.+++.||||||
T Consensus 118 llLmEyC~gg~Lvd~mn~Rlq-----~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls~~g~~KLCDFG 191 (738)
T KOG1989|consen 118 LLLMEYCKGGSLVDFMNTRLQ-----TRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLSADGNYKLCDFG 191 (738)
T ss_pred EeehhhccCCcHHHHHHHHHh-----ccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEcCCCCEEeCccc
Confidence 999999999999999986543 349999999999999999999998 57899999999999999999999999999
Q ss_pred hhhhcCCCC------------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGDA------------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~~------------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.|...-... -....|+.|++||.+.... ..+ +++|+|||++||+||-|+....||...
T Consensus 192 Satt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlys--g~p----I~eKsDIWALGclLYkLCy~t~PFe~s 261 (738)
T KOG1989|consen 192 SATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYS--GLP----IGEKSDIWALGCLLYKLCYFTTPFEES 261 (738)
T ss_pred ccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhc--CCC----CcchhHHHHHHHHHHHHHHhCCCcCcC
Confidence 986541111 1234689999999875422 112 799999999999999999999999644
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=312.22 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=160.7
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+|+..++||+|+||.||+|+. .+|+.||||.+...... .+.+.+|++++++++|+||+++++++.. ++..|+||||
T Consensus 75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~ 153 (353)
T PLN00034 75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-NGEIQVLLEF 153 (353)
T ss_pred HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-CCeEEEEEec
Confidence 355678999999999999984 57899999998654322 4679999999999999999999997755 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+.. ..++..+..++.||+.||+|||+. +|+||||||+|||+++++.+||+|||+++...
T Consensus 154 ~~~~~L~~~~-----------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~ 219 (353)
T PLN00034 154 MDGGSLEGTH-----------IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILA 219 (353)
T ss_pred CCCCcccccc-----------cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceecc
Confidence 9999986532 256777889999999999999997 99999999999999999999999999998653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. .....||..|+|||.+........ ..+.++|||||||++|||++|+.||..
T Consensus 220 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~----~~~~~~DvwslGvil~el~~g~~pf~~ 275 (353)
T PLN00034 220 QTMDPCNSSVGTIAYMSPERINTDLNHGA----YDGYAGDIWSLGVSILEFYLGRFPFGV 275 (353)
T ss_pred cccccccccccCccccCccccccccccCc----CCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence 22 234578999999998643211100 035689999999999999999999963
|
|
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=308.22 Aligned_cols=188 Identities=19% Similarity=0.166 Sum_probs=161.2
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+. .+++.||||+++..... .+.+.+|+.++.++ +||||+++++++.. .+..|+||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~ 79 (327)
T cd05617 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQT-TSRLFLVIEYVN 79 (327)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEe-CCEEEEEEeCCC
Confidence 4799999999999995 56889999999764322 34688999999988 69999999996654 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ--- 690 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~--- 690 (766)
+|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++..
T Consensus 80 ~~~L~~~~~~~~-------~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 149 (327)
T cd05617 80 GGDLMFHMQRQR-------KLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGP 149 (327)
T ss_pred CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCC
Confidence 999999886543 389999999999999999999997 9999999999999999999999999998753
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
........||+.|+|||.+.... ++.++|||||||++|||+||+.||.
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslGvil~ell~g~~pf~ 197 (327)
T cd05617 150 GDTTSTFCGTPNYIAPEILRGEE---------YGFSVDWWALGVLMFEMMAGRSPFD 197 (327)
T ss_pred CCceecccCCcccCCHHHHCCCC---------CCchheeehhHHHHHHHHhCCCCCC
Confidence 22233456899999999876544 4689999999999999999999995
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=300.69 Aligned_cols=198 Identities=22% Similarity=0.283 Sum_probs=163.4
Q ss_pred CCCCccceeecCCcceEEEEEE--cCCcEEEEEEeecccc---CHHHHHHHHHHHhhc---CCCCcccceeEEEe----c
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL--EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKV---SHARLVPLLGHCME----R 601 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~--~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l---~H~niv~l~~~~~~----~ 601 (766)
++|+..+.||+|+||.||+|+. .+++.||||+++.... ....+.+|+++++++ +||||++++++|.. .
T Consensus 1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~ 80 (290)
T cd07862 1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR 80 (290)
T ss_pred CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence 3688899999999999999985 3478899999865432 234677888887766 69999999998752 2
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
....++||||++ |+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||
T Consensus 81 ~~~~~lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl 151 (290)
T cd07862 81 ETKLTLVFEHVD-QDLTTYLDKVPE-----PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKL 151 (290)
T ss_pred CCcEEEEEccCC-CCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEE
Confidence 346899999997 699999875432 2489999999999999999999997 9999999999999999999999
Q ss_pred ccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||+++.... ......+|..|+|||.+.... ++.++|||||||++|||++|++||...
T Consensus 152 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~~f~~~ 212 (290)
T cd07862 152 ADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS---------YATPVDLWSVGCIFAEMFRRKPLFRGS 212 (290)
T ss_pred ccccceEeccCCcccccccccccccChHHHhCCC---------CCCccchHHHHHHHHHHHcCCCCcCCC
Confidence 99999976532 233456789999999875443 467999999999999999999998543
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=314.44 Aligned_cols=189 Identities=21% Similarity=0.224 Sum_probs=163.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|+..+.||+|+||.||+|.. .+++.||+|+.. .+.+.+|++++++++|||||++++++.. +...++|+||+
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-----~~~~~~E~~il~~l~HpnIv~~~~~~~~-~~~~~lv~e~~ 165 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----RGGTATEAHILRAINHPSIIQLKGTFTY-NKFTCLILPRY 165 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-----hhhhHHHHHHHHhCCCCCCCCEeEEEEE-CCeeEEEEecC
Confidence 5699999999999999999994 678999999753 3457899999999999999999997765 56789999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC-
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG- 691 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~- 691 (766)
. ++|.+++..+. .+++.+++.++.|++.||+|||+. +||||||||+|||++.++.+||+|||+|+...
T Consensus 166 ~-~~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~ 234 (391)
T PHA03212 166 K-TDLYCYLAAKR-------NIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVD 234 (391)
T ss_pred C-CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCccccccc
Confidence 6 69998886543 389999999999999999999997 99999999999999999999999999997532
Q ss_pred ---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 ---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.......||+.|+|||.+.... ++.++|||||||++|||+||+.||+.
T Consensus 235 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvil~elltg~~p~~~ 285 (391)
T PHA03212 235 INANKYYGWAGTIATNAPELLARDP---------YGPAVDIWSAGIVLFEMATCHDSLFE 285 (391)
T ss_pred ccccccccccCccCCCChhhhcCCC---------CCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence 1223457899999999886544 46899999999999999999998854
|
|
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=308.07 Aligned_cols=190 Identities=18% Similarity=0.182 Sum_probs=162.7
Q ss_pred ceeecCCcceEEEEEE----cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 540 NLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
+.||+|+||.||+++. .+|+.||+|++...... ...+.+|++++++++||||+++++++.. ++..|+||||+
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~ 80 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-EGKLYLILDFL 80 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-CCEEEEEEcCC
Confidence 6799999999999874 46899999999754322 3467889999999999999999997765 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++.+.. .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++....
T Consensus 81 ~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~ 150 (318)
T cd05582 81 RGGDLFTRLSKEV-------MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESID 150 (318)
T ss_pred CCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCC
Confidence 9999999996543 389999999999999999999997 999999999999999999999999999876532
Q ss_pred C---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 D---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 151 ~~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~tg~~p~~~~ 201 (318)
T cd05582 151 HEKKAYSFCGTVEYMAPEVVNRRG---------HTQSADWWSFGVLMFEMLTGSLPFQGK 201 (318)
T ss_pred CCCceecccCChhhcCHHHHcCCC---------CCCccceeccceEeeeeccCCCCCCCC
Confidence 2 23456789999999876443 467999999999999999999999543
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=300.33 Aligned_cols=196 Identities=21% Similarity=0.202 Sum_probs=166.8
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.|+..++||+|+||+||++.. .+++.||||++...... ...+.+|++++++++||||+++++.+.. ++..++||
T Consensus 1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~ 79 (285)
T cd05605 1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-KDALCLVL 79 (285)
T ss_pred CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecC-CCeEEEEE
Confidence 377889999999999999994 57899999999754322 3457889999999999999999987755 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++.
T Consensus 80 e~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~ 151 (285)
T cd05605 80 TLMNGGDLKFHIYNMGN-----PGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVE 151 (285)
T ss_pred eccCCCcHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCcee
Confidence 99999999998865322 2489999999999999999999997 999999999999999999999999999876
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||.+.... ++.++||||+||++|||++|+.||..
T Consensus 152 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Diws~G~~l~el~~g~~pf~~ 203 (285)
T cd05605 152 IPEGETIRGRVGTVGYMAPEVVKNER---------YTFSPDWWGLGCLIYEMIEGKSPFRQ 203 (285)
T ss_pred cCCCCccccccCCCCccCcHHhcCCC---------CCccccchhHHHHHHHHHHCCCCCCC
Confidence 5322 23346788999999876443 46789999999999999999999964
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=305.85 Aligned_cols=190 Identities=19% Similarity=0.204 Sum_probs=157.9
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHH-HHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELD-FFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.||+|+||.||+|+. .+++.||+|.+..... ...++.+|.. +++.++||||+++++++.. ++..|+||||++
T Consensus 1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~-~~~~~lv~e~~~ 79 (325)
T cd05602 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-ADKLYFVLDYIN 79 (325)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEc-CCeEEEEEeCCC
Confidence 4699999999999995 4678999999975432 1234555554 5678999999999987765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|.+++.... .+++.+...++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++...
T Consensus 80 ~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~ 149 (325)
T cd05602 80 GGELFYHLQRER-------CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 149 (325)
T ss_pred CCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccC
Confidence 999999997543 377888889999999999999997 99999999999999999999999999987532
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.......||..|+|||.+.... ++.++||||+||++|||++|+.||...
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~pf~~~ 199 (325)
T cd05602 150 NGTTSTFCGTPEYLAPEVLHKQP---------YDRTVDWWCLGAVLYEMLYGLPPFYSR 199 (325)
T ss_pred CCCcccccCCccccCHHHHcCCC---------CCCccccccccHHHHHHhcCCCCCCCC
Confidence 2233456899999999876543 467999999999999999999999643
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=299.95 Aligned_cols=191 Identities=18% Similarity=0.202 Sum_probs=160.9
Q ss_pred eecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||+||++.. .+|+.||||++...... .+.+..|++++++++||||+++.+++.. ++..|+|||||++|+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-~~~~~lv~e~~~~g~ 79 (280)
T cd05608 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQT-KTDLCLVMTIMNGGD 79 (280)
T ss_pred CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcC-CCeEEEEEeCCCCCC
Confidence 69999999999984 57899999999754322 3567889999999999999999886654 567999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC---
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--- 693 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--- 693 (766)
|.+++..... ....+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++.....
T Consensus 80 L~~~~~~~~~---~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~ 153 (280)
T cd05608 80 LRYHIYNVDE---ENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK 153 (280)
T ss_pred HHHHHHhccc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcc
Confidence 9988854321 123589999999999999999999997 9999999999999999999999999998765322
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.....+|..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 154 ~~~~~g~~~y~aPE~~~~~~---------~~~~~DvwslG~il~el~~g~~pf~~ 199 (280)
T cd05608 154 TKGYAGTPGFMAPELLQGEE---------YDFSVDYFALGVTLYEMIAARGPFRA 199 (280)
T ss_pred ccccCCCcCccCHHHhcCCC---------CCccccHHHHHHHHHHHHhCCCCCCC
Confidence 22346788999999886544 46799999999999999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=315.02 Aligned_cols=202 Identities=18% Similarity=0.238 Sum_probs=168.6
Q ss_pred CCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEec-----CCcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMER-----ENEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~~~~l 607 (766)
+...+.+|+|+||.||+|+ ..+|+.||||.++.... ..+..-+|+++|++++|||||++++.-.+. .....+
T Consensus 15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl 94 (732)
T KOG4250|consen 15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL 94 (732)
T ss_pred eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence 3446789999999999999 78899999999976433 267889999999999999999999853321 134689
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC--CCCc--EEecc
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD--DKFE--VRLGS 683 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~--~~~~--~kl~D 683 (766)
|||||++|||+..|.+-. ....|++.+.+.+..+++.||.|||++ +||||||||.||++- .+|+ -||+|
T Consensus 95 vmEyC~gGsL~~~L~~PE----N~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtD 167 (732)
T KOG4250|consen 95 VMEYCSGGSLRKVLNSPE----NAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTD 167 (732)
T ss_pred EEeecCCCcHHHHhcCcc----cccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeec
Confidence 999999999999997532 234599999999999999999999987 999999999999984 3444 79999
Q ss_pred chhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 684 LSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 684 FG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
||.||..++. ....+||+.|.+||.++...+ ++.-+|.|||||++||.+||..||.+..-.
T Consensus 168 fG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~--------y~~tVDLWS~GvtlY~caTG~lPF~p~~~p 230 (732)
T KOG4250|consen 168 FGAARELDDNSLFTSLVGTEEYLHPELYERQKK--------YTATVDLWSFGVTLYECATGELPFIPFGGP 230 (732)
T ss_pred ccccccCCCCCeeeeecCchhhcChHHHhhccC--------cCceeehhhhhhHHHHHhccCCCCCcCCCc
Confidence 9999988543 456789999999999885222 578899999999999999999999655444
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=291.09 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=170.7
Q ss_pred CccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeC
Q 004248 537 SDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
+....||.|+||+|+|.. .+.|+..|||+++..... +++++.|.+...+- +.||||+++|.++. ++..|+.||.|
T Consensus 67 qdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~-EGdcWiCMELM 145 (361)
T KOG1006|consen 67 QDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFS-EGDCWICMELM 145 (361)
T ss_pred HHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhc-CCceeeeHHHH
Confidence 345789999999999998 678999999999876543 66899999865554 78999999999987 67899999999
Q ss_pred CCCChhhhhhc---cCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 613 PNGDLSSSLYR---KTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 613 ~~GsL~~~l~~---~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
+- +|+.+... ... ..+++.-.-.|+..++.||.||.+. .+|||||+||+|||+|..|.+|+||||++..
T Consensus 146 d~-SlDklYk~vy~vq~-----~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGq 217 (361)
T KOG1006|consen 146 DI-SLDKLYKRVYSVQK-----SRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQ 217 (361)
T ss_pred hh-hHHHHHHHHHHHHh-----ccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHh
Confidence 74 77655432 111 2488888888999999999999876 5899999999999999999999999999876
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceee
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTI 759 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~ 759 (766)
+.+. .+...|.+.|||||.+.....|| +.++||||+|++|||++||+.|+..+..-.+|+.++
T Consensus 218 Lv~SiAkT~daGCrpYmAPERi~p~~~gy-------DiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~V 282 (361)
T KOG1006|consen 218 LVDSIAKTVDAGCRPYMAPERIDPSDKGY-------DIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQV 282 (361)
T ss_pred HHHHHHhhhccCCccccChhccCCccCCc-------chhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHH
Confidence 5333 23456889999999998877664 789999999999999999999998777766666554
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.65 Aligned_cols=192 Identities=19% Similarity=0.266 Sum_probs=169.3
Q ss_pred CCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
|+.++++|+|+||.||||. .+.|..||||++.... ..+++..|+.+|++++.|+||+.||.|+. ...+|+|||||-.
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s-DLQEIIKEISIMQQC~S~yVVKYYGSYFK-~sDLWIVMEYCGA 112 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT-DLQEIIKEISIMQQCKSKYVVKYYGSYFK-HSDLWIVMEYCGA 112 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc-hHHHHHHHHHHHHHcCCchhhhhhhhhcc-CCceEeehhhcCC
Confidence 5667899999999999998 6789999999986543 45679999999999999999999998876 4679999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD- 693 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~- 693 (766)
|+..+.++-++. .+++.++..|....++||+|||.. +-||||||+.|||++.+|.+|++|||.|..+.+.
T Consensus 113 GSiSDI~R~R~K------~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM 183 (502)
T KOG0574|consen 113 GSISDIMRARRK------PLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM 183 (502)
T ss_pred CcHHHHHHHhcC------CccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhhH
Confidence 999999986543 599999999999999999999986 7899999999999999999999999999766432
Q ss_pred --CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 694 --AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 694 --~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
..+..||++|||||++..- | |++++||||+|++..||+.||+|+.
T Consensus 184 AKRNTVIGTPFWMAPEVI~EI--G-------Y~~~ADIWSLGITaIEMAEG~PPYs 230 (502)
T KOG0574|consen 184 AKRNTVIGTPFWMAPEVIEEI--G-------YDTKADIWSLGITAIEMAEGRPPYS 230 (502)
T ss_pred HhhCccccCcccccHHHHHHh--c-------cchhhhHhhhcchhhhhhcCCCCcc
Confidence 3457899999999998643 3 4789999999999999999999984
|
|
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=321.83 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=166.5
Q ss_pred CCccceeecCCcceEEEEEE-cC-CcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EG-GIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~-g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
|...+.||+|+||.||+|.. .+ ++.||+|.+...... ...+.+|++++++++|||||++++++.. ++..|+||||+
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~-~~~~~lv~E~~ 147 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKS-DDKLLLIMEYG 147 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEE-CCEEEEEEECC
Confidence 77889999999999999984 34 678999987544333 4567889999999999999999998766 57899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++++... ....+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++....
T Consensus 148 ~gg~L~~~l~~~~~---~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~ 221 (478)
T PTZ00267 148 SGGDLNKQIKQRLK---EHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSD 221 (478)
T ss_pred CCCCHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCC
Confidence 99999998864321 123588999999999999999999997 999999999999999999999999999986532
Q ss_pred C-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 D-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. ....+||+.|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 222 ~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Dv~slG~~l~el~tg~~Pf~~ 273 (478)
T PTZ00267 222 SVSLDVASSFCGTPYYLAPELWERKR---------YSKKADMWSLGVILYELLTLHRPFKG 273 (478)
T ss_pred ccccccccccCCCccccCHhHhCCCC---------CCcHHhHHHHHHHHHHHHhCCCCCCC
Confidence 2 23346899999999876543 47899999999999999999999954
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=299.52 Aligned_cols=196 Identities=23% Similarity=0.228 Sum_probs=171.8
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+.|..-++||+|+||.||.++ ..+|+.+|.|++.+...+ ....+.|-.++.+++.+.||.+- |.+++.+.+++|
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVsla-YAfeTkd~LClV 263 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLA-YAFETKDALCLV 263 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEe-eeecCCCceEEE
Confidence 458888999999999999998 578999999999765433 34578899999999999999976 455667789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
+..|.||||.-+|...+. ..+++.+.+.||.+|+.||++||+. +||.||+||+|||+|++|+++|+|.|+|.
T Consensus 264 LtlMNGGDLkfHiyn~g~-----~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAv 335 (591)
T KOG0986|consen 264 LTLMNGGDLKFHIYNHGN-----PGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAV 335 (591)
T ss_pred EEeecCCceeEEeeccCC-----CCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEE
Confidence 999999999999987653 3499999999999999999999998 99999999999999999999999999998
Q ss_pred hc--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 689 AQ--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 689 ~~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
.+ +.+....+||..|||||++..+.| +...|+||+||++|||+.|+.||-
T Consensus 336 ei~~g~~~~~rvGT~GYMAPEvl~ne~Y---------~~s~Dwf~lGCllYemi~G~sPFr 387 (591)
T KOG0986|consen 336 EIPEGKPIRGRVGTVGYMAPEVLQNEVY---------DFSPDWFSLGCLLYEMIAGHSPFR 387 (591)
T ss_pred ecCCCCccccccCcccccCHHHHcCCcc---------cCCccHHHHHhHHHHHHcccCchh
Confidence 76 334455589999999999988875 567799999999999999999993
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=285.93 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=170.0
Q ss_pred CCCCccceeecCCcceEEEEEEc---C--CcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE---G--GIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~---~--g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
..|+....||+|.||.||||+.. + .+.+|+|+++..+.. ....-||+.++++++|||||.+..++...+..+
T Consensus 24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v 103 (438)
T KOG0666|consen 24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV 103 (438)
T ss_pred HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence 45888899999999999999732 2 347999999765332 456789999999999999999999887656789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC----CcEEe
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK----FEVRL 681 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~----~~~kl 681 (766)
++++||++. ||...|+-++.. ....++-...+.|..||+.|+.|||++ =|+|||+||.|||+..+ |.+||
T Consensus 104 ~l~fdYAEh-DL~~II~fHr~~--~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VKI 177 (438)
T KOG0666|consen 104 WLLFDYAEH-DLWHIIKFHRAS--KAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVKI 177 (438)
T ss_pred EEEehhhhh-hHHHHHHHhccc--hhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeEe
Confidence 999999996 999999755432 124588889999999999999999998 79999999999999877 89999
Q ss_pred ccchhhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 682 GSLSEVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+|||+||.+..+ ....+.|.||+|||.+.+..+ ||.+.||||.|||..||+|-++-|..
T Consensus 178 aDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~h--------YT~AiDvWAiGCIfaElLtl~PlF~g 242 (438)
T KOG0666|consen 178 ADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARH--------YTKAIDVWAIGCIFAELLTLEPLFKG 242 (438)
T ss_pred ecccHHHHhhccccccccCCceEEEEEecChHHhccccc--------ccchhhhHHHHHHHHHHHccCccccc
Confidence 999999987543 334678999999999887765 79999999999999999998877743
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=284.05 Aligned_cols=204 Identities=15% Similarity=0.231 Sum_probs=171.8
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcC-CCCcccceeEEEe
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVS-HARLVPLLGHCME 600 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~-H~niv~l~~~~~~ 600 (766)
-+++|+.+-| .+.+|+|+|+.|--++ ..+|..+|||++++.... +.+..||++++.+.+ |+||++|++++.+
T Consensus 73 g~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd 147 (463)
T KOG0607|consen 73 GKFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED 147 (463)
T ss_pred chHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence 3578888877 4789999999999998 889999999999877555 678999999999995 9999999997654
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC---
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF--- 677 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~--- 677 (766)
+...|||||-|.||.|.++|+++.. +++.+..++..+||.||.|||.+ +|.|||+||+|||-.+-.
T Consensus 148 -d~~FYLVfEKm~GGplLshI~~~~~-------F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vs 216 (463)
T KOG0607|consen 148 -DTRFYLVFEKMRGGPLLSHIQKRKH-------FNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVS 216 (463)
T ss_pred -cceEEEEEecccCchHHHHHHHhhh-------ccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcC
Confidence 6789999999999999999987765 89999999999999999999998 999999999999997543
Q ss_pred cEEeccchhhhhc--C--------CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 678 EVRLGSLSEVCAQ--G--------GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 678 ~~kl~DFG~a~~~--~--------~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
-+||+||.+...+ . ....+-+|+..|||||+......... .|+.++|.||+|||+|-|+.|.+||.
T Consensus 217 PvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~----~YDKrCDlwSLGvIlYImLsGYpPFv 292 (463)
T KOG0607|consen 217 PVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQAT----FYDKRCDLWSLGVILYIMLSGYPPFV 292 (463)
T ss_pred ceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccc----cccccccHHHHHHHHHHHHhCCCCcc
Confidence 4899999877543 1 12234578889999997654322111 27999999999999999999999994
|
|
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=322.22 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=166.7
Q ss_pred HHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCC------CcccceeEEEe
Q 004248 528 QLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHA------RLVPLLGHCME 600 (766)
Q Consensus 528 ~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~------niv~l~~~~~~ 600 (766)
++...+++|+..++||+|+||+||+|.. .+++.||||+++......+++..|++++++++|. +++++++++..
T Consensus 123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~ 202 (467)
T PTZ00284 123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN 202 (467)
T ss_pred ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence 3444568899999999999999999984 5688999999965433345667788888877654 58888887765
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC---
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF--- 677 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~--- 677 (766)
..+..++|||++ +++|.+++.+++ .+++..+..|+.||+.||+|||++ .+||||||||+|||++.++
T Consensus 203 ~~~~~~iv~~~~-g~~l~~~l~~~~-------~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~ 272 (467)
T PTZ00284 203 ETGHMCIVMPKY-GPCLLDWIMKHG-------PFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVV 272 (467)
T ss_pred CCceEEEEEecc-CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCccc
Confidence 456789999998 679999887543 389999999999999999999973 2899999999999998765
Q ss_pred -------------cEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 678 -------------EVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 678 -------------~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
.+||+|||.+..........++|+.|+|||.+.+.. ++.++|||||||++|||+||+.
T Consensus 273 ~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~---------~~~~~DiwSlGvil~elltG~~ 343 (467)
T PTZ00284 273 DPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLG---------WMYSTDMWSMGCIIYELYTGKL 343 (467)
T ss_pred ccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCC---------CCcHHHHHHHHHHHHHHHhCCC
Confidence 499999998876544555667899999999986554 4679999999999999999999
Q ss_pred CCCCC
Q 004248 745 LNLSS 749 (766)
Q Consensus 745 p~~~~ 749 (766)
||...
T Consensus 344 pf~~~ 348 (467)
T PTZ00284 344 LYDTH 348 (467)
T ss_pred CCCCC
Confidence 99543
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=281.79 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=171.9
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---------HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---------TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---------~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
+.|...+++|.|..++|.++. .++|+..|+|++...... .++-.+|+.||+++ .||+|+++.++|.. +
T Consensus 17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes-~ 95 (411)
T KOG0599|consen 17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYES-D 95 (411)
T ss_pred hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccC-c
Confidence 457778899999999999987 678999999999643221 35677899999998 59999999996654 6
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...++|+|.|+.|.|+++|...- .+++....+|+.|+..|++|||.. .|||||+||+|||+|++.++||+
T Consensus 96 sF~FlVFdl~prGELFDyLts~V-------tlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~is 165 (411)
T KOG0599|consen 96 AFVFLVFDLMPRGELFDYLTSKV-------TLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKIS 165 (411)
T ss_pred chhhhhhhhcccchHHHHhhhhe-------eecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEe
Confidence 78999999999999999997653 489999999999999999999998 99999999999999999999999
Q ss_pred cchhhhhc--CCCCccceeeecccCCCCCCCCce-eeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 683 SLSEVCAQ--GGDAHQSRITRLLRLPQSSEQGSS-GMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 683 DFG~a~~~--~~~~~~~~~t~~y~aPe~~~~~~~-g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
|||+|..+ +......+||+.|.|||++.+..+ +.++ |+..+|.||.|||||.++.|.+||.
T Consensus 166 DFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pG----Ys~EVD~Wa~GVImyTLLaGcpPFw 229 (411)
T KOG0599|consen 166 DFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPG----YSKEVDEWACGVIMYTLLAGCPPFW 229 (411)
T ss_pred ccceeeccCCchhHHHhcCCCcccChhheeeecccCCCC----ccchhhHHHHHHHHHHHHcCCCchh
Confidence 99999877 445677899999999998876433 2234 6889999999999999999999984
|
|
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=300.84 Aligned_cols=202 Identities=19% Similarity=0.328 Sum_probs=163.3
Q ss_pred CCCCccceeecCCcceEEEEEEc-----------------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-----------------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPL 594 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-----------------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l 594 (766)
++|...++||+|+||.||+|..+ ++..||+|.+...... ..+|.+|++++.+++|||||++
T Consensus 5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~ 84 (304)
T cd05096 5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL 84 (304)
T ss_pred hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence 46788899999999999999743 2347999998754322 4579999999999999999999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhhhhccCCC------------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeE
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNT------------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFV 662 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ii 662 (766)
++++.+ .+..++||||+++|+|.+++...... ......++|.++.+++.|++.||+|||+. +|+
T Consensus 85 ~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~iv 160 (304)
T cd05096 85 LGVCVD-EDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFV 160 (304)
T ss_pred EEEEec-CCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---Ccc
Confidence 998876 56799999999999999998653211 01123589999999999999999999997 999
Q ss_pred ecCCCCCCeeeCCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHH
Q 004248 663 HRDVQASSILLDDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLF 737 (766)
Q Consensus 663 HrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ 737 (766)
||||||+|||+++++.+||+|||+++...... ....++..|+|||....+. ++.++|||||||++|
T Consensus 161 H~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~~l~ 231 (304)
T cd05096 161 HRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGK---------FTTASDVWAFGVTLW 231 (304)
T ss_pred ccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCC---------CCchhhhHHHHHHHH
Confidence 99999999999999999999999997652211 1223466799999875543 478999999999999
Q ss_pred HHhc--CCCCCCC
Q 004248 738 SAIF--NNHLNLS 748 (766)
Q Consensus 738 ellt--G~~p~~~ 748 (766)
||++ |..||..
T Consensus 232 el~~~~~~~p~~~ 244 (304)
T cd05096 232 EILMLCKEQPYGE 244 (304)
T ss_pred HHHHccCCCCCCc
Confidence 9987 5667743
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=317.15 Aligned_cols=199 Identities=16% Similarity=0.219 Sum_probs=161.2
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEec-----C--Cc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER-----E--NE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~--~~ 604 (766)
.++|...++||+|+||.||+|.. .+++.||||++.... ....+|+.+|++++|||||++++++... + ..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 141 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIF 141 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceE
Confidence 45799999999999999999995 578999999985432 2345799999999999999999876431 1 13
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEecc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGS 683 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~D 683 (766)
.++||||+++ +|.+++..... ....+++.....++.|++.||+|||+. +|+||||||+|||++.++ .+||+|
T Consensus 142 l~lvmE~~~~-~l~~~~~~~~~---~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~D 214 (440)
T PTZ00036 142 LNVVMEFIPQ-TVHKYMKHYAR---NNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCD 214 (440)
T ss_pred EEEEEecCCc-cHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeec
Confidence 6799999985 78777753211 113589999999999999999999998 999999999999999664 799999
Q ss_pred chhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+|+... .......+|+.|+|||.+.+... ++.++|||||||++|||+||++||...
T Consensus 215 FGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwSlGvil~elltG~~pf~~~ 274 (440)
T PTZ00036 215 FGSAKNLLAGQRSVSYICSRFYRAPELMLGATN--------YTTHIDLWSLGCIIAEMILGYPIFSGQ 274 (440)
T ss_pred cccchhccCCCCcccCCCCcCccCHHHhcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99998653 23344577999999998754321 578999999999999999999999543
|
|
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=311.90 Aligned_cols=203 Identities=21% Similarity=0.302 Sum_probs=164.7
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|+..+.||+|+||.||+|+. .++..||||+++..... .+.+.+|+++++++ +|||||+++++|.. .+.
T Consensus 38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~-~~~ 116 (374)
T cd05106 38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH-GGP 116 (374)
T ss_pred HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC-CCC
Confidence 4688899999999999999973 23458999999754322 45788999999999 89999999998876 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCC---------------------------------------------------------
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT--------------------------------------------------------- 627 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~--------------------------------------------------------- 627 (766)
.++|||||++|+|.++++.....
T Consensus 117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (374)
T cd05106 117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD 196 (374)
T ss_pred eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence 99999999999999998643210
Q ss_pred ------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCc-----c
Q 004248 628 ------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH-----Q 696 (766)
Q Consensus 628 ------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~-----~ 696 (766)
......++|.+..+++.||+.||+|||+. +|+||||||+|||+++++.+||+|||+++....... .
T Consensus 197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~ 273 (374)
T cd05106 197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGN 273 (374)
T ss_pred ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccC
Confidence 00113589999999999999999999997 999999999999999999999999999976532211 1
Q ss_pred ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 697 SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 697 ~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
..++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 274 ~~~~~~y~aPE~~~~~~---------~~~~~DvwSlGvil~ellt~G~~Pf~~~ 318 (374)
T cd05106 274 ARLPVKWMAPESIFDCV---------YTVQSDVWSYGILLWEIFSLGKSPYPGI 318 (374)
T ss_pred CCCccceeCHHHhcCCC---------CCccccHHHHHHHHHHHHhCCCCCCccc
Confidence 12345699999876543 5789999999999999997 99998543
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=291.56 Aligned_cols=197 Identities=20% Similarity=0.308 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|...++..+|+|.+.......++|.+|++++++++||||+++++++.. ++..++||||++
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~iv~e~~~ 82 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQ-QKPLYIVTEFME 82 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEcc-CCCEEEEEEcCC
Confidence 3577789999999999999998888899999987655556789999999999999999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.++++.... .++|..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.++.....
T Consensus 83 ~~~L~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~ 153 (256)
T cd05114 83 NGCLLNYLRQRQG------KLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDD 153 (256)
T ss_pred CCcHHHHHHhCcc------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCC
Confidence 9999999975432 389999999999999999999987 9999999999999999999999999998764221
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
. ....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 154 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~s~G~~l~el~~~g~~p~~~~ 205 (256)
T cd05114 154 EYTSSSGAKFPVKWSPPEVFNFSK---------YSSKSDVWSFGVLMWEVFTEGKMPFEKK 205 (256)
T ss_pred ceeccCCCCCchhhCChhhcccCc---------cchhhhhHHHHHHHHHHHcCCCCCCCCC
Confidence 1 1122345799999876443 4679999999999999999 89998543
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=304.96 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=178.5
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++.|.....||+|.|++|..|+ ..+|..||||.+++.... .+.+.+|+++|..++|||||+++.+.. .+..+|+
T Consensus 54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~-t~~~lyl 132 (596)
T KOG0586|consen 54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIE-TEATLYL 132 (596)
T ss_pred cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeee-ecceeEE
Confidence 45678889999999999999998 567999999999876654 456999999999999999999999654 4678999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+.+|++++++.+++. +.+.....++.|+.+|++|||++ .|||||||++||||+.++++||+|||++
T Consensus 133 V~eya~~ge~~~yl~~~gr-------~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS 202 (596)
T KOG0586|consen 133 VMEYASGGELFDYLVKHGR-------MKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFS 202 (596)
T ss_pred EEEeccCchhHHHHHhccc-------chhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccc
Confidence 9999999999999987765 55677888999999999999998 8999999999999999999999999999
Q ss_pred hhc--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 688 CAQ--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 688 ~~~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
..+ +....+.+|++.|.|||...+..| .++++|+||+||++|-|+.|..||+.....
T Consensus 203 ~~~~~~~~lqt~cgsppyAaPEl~~g~~y--------~gpe~D~Wslgvvly~LV~GsLPFDG~~lk 261 (596)
T KOG0586|consen 203 TFFDYGLMLQTFCGSPPYAAPELFNGKKY--------DGPEVDIWSLGVVLYALVEGSLPFDGQNLK 261 (596)
T ss_pred eeecccccccccCCCCCccChHhhcCccc--------CCcceehhhhhhhheeeeecccccCCcccc
Confidence 876 344677899999999999987765 468999999999999999999999765544
|
|
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=305.35 Aligned_cols=198 Identities=17% Similarity=0.211 Sum_probs=168.2
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEec-----
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMER----- 601 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~----- 601 (766)
+..++|...+.||+|+||.||+|.. .+++.||||++..... ..+++.+|++++++++||||+++++++...
T Consensus 12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07878 12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN 91 (343)
T ss_pred hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence 3457799999999999999999984 6788999999865332 245688999999999999999999876432
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
....|+++||+ +++|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||
T Consensus 92 ~~~~~~~~~~~-~~~l~~~~~~~--------~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl 159 (343)
T cd07878 92 FNEVYLVTNLM-GADLNNIVKCQ--------KLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRI 159 (343)
T ss_pred cCcEEEEeecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEE
Confidence 13579999998 67998887532 389999999999999999999998 9999999999999999999999
Q ss_pred ccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 682 GSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+|||+++..........+|+.|+|||.+..... ++.++||||+||++|||++|+.||..
T Consensus 160 ~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~pf~~ 218 (343)
T cd07878 160 LDFGLARQADDEMTGYVATRWYRAPEIMLNWMH--------YNQTVDIWSVGCIMAELLKGKALFPG 218 (343)
T ss_pred cCCccceecCCCcCCccccccccCchHhcCCcc--------CCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 999999877666666778999999998754321 57899999999999999999999954
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=302.36 Aligned_cols=190 Identities=17% Similarity=0.194 Sum_probs=161.5
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||+||+|.. .+++.||||.++.... ..+.+.+|.++++.+ +||||+++++++.. .+..|+||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~-~~~~~lv~e~~~ 79 (318)
T cd05570 1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQT-KDRLFFVMEYVN 79 (318)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-CCEEEEEEcCCC
Confidence 4799999999999985 4688999999975432 245678899999888 69999999997665 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ--- 690 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~--- 690 (766)
+|+|.+++.+.. .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++..
T Consensus 80 ~~~L~~~~~~~~-------~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~ 149 (318)
T cd05570 80 GGDLMFHIQRSG-------RFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILG 149 (318)
T ss_pred CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcC
Confidence 999999887543 389999999999999999999997 9999999999999999999999999998653
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
........+|..|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~DiwslGvil~~l~~G~~pf~~~ 199 (318)
T cd05570 150 GVTTSTFCGTPDYIAPEILSYQP---------YGPAVDWWALGVLLYEMLAGQSPFEGD 199 (318)
T ss_pred CCcccceecCccccCHHHhcCCC---------CCcchhhhhHHHHHHHHhhCCCCCCCC
Confidence 12233456889999999876544 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=293.89 Aligned_cols=197 Identities=19% Similarity=0.325 Sum_probs=163.9
Q ss_pred CCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|... .+..||+|.++..... .+.|.+|+.++++++||||+++++++.. .+..++
T Consensus 5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~l 83 (266)
T cd05064 5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITR-GNTMMI 83 (266)
T ss_pred HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEec-CCCcEE
Confidence 45788899999999999999842 3679999998754322 4579999999999999999999998765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.... ..++|.++..++.|++.||+|||+. +++||||||+||+++.++.+|++|||.+
T Consensus 84 v~e~~~~~~L~~~l~~~~------~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~ 154 (266)
T cd05064 84 VTEYMSNGALDSFLRKHE------GQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRL 154 (266)
T ss_pred EEEeCCCCcHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCccc
Confidence 999999999999997543 2489999999999999999999987 9999999999999999999999999987
Q ss_pred hhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
...... .....++..|+|||...... ++.++|||||||++||+++ |+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~ell~~g~~p~~~~ 212 (266)
T cd05064 155 QEDKSEAIYTTMSGKSPVLWAAPEAIQYHH---------FSSASDVWSFGIVMWEVMSYGERPYWDM 212 (266)
T ss_pred ccccccchhcccCCCCceeecCHHHHhhCC---------ccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence 653211 11223456899999875543 4789999999999999775 99999543
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=300.92 Aligned_cols=198 Identities=19% Similarity=0.254 Sum_probs=166.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...+.||+|+||.||+|+. .+++.||+|+++..... ...+.+|++++++++||||+++++++.. ++..++|||
T Consensus 6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 84 (309)
T cd07872 6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHT-DKSLTLVFE 84 (309)
T ss_pred CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEee-CCeEEEEEe
Confidence 4688899999999999999985 46889999998754332 4568899999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++ +|.+++...+ ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 85 ~~~~-~l~~~~~~~~------~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~ 154 (309)
T cd07872 85 YLDK-DLKQYMDDCG------NIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAK 154 (309)
T ss_pred CCCC-CHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceec
Confidence 9985 8988886543 2478999999999999999999997 9999999999999999999999999998764
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....++..|+|||....... ++.++||||+||++|||+||+.||....
T Consensus 155 ~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~tg~~pf~~~~ 209 (309)
T cd07872 155 SVPTKTYSNEVVTLWYRPPDVLLGSSE--------YSTQIDMWGVGCIFFEMASGRPLFPGST 209 (309)
T ss_pred CCCccccccccccccccCCHHHhCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 322 223457889999998754321 4789999999999999999999995443
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=309.07 Aligned_cols=196 Identities=17% Similarity=0.213 Sum_probs=164.2
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC----CcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE----NEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~~ 606 (766)
+|+..+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|+++++.++||||+++++++.... ...|
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~ 80 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY 80 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence 478889999999999999995 5799999999864322 2457889999999999999999999776532 1689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+. ++|.+.+.... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 81 lv~e~~~-~~l~~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~ 149 (372)
T cd07853 81 VVTELMQ-SDLHKIIVSPQ-------PLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGL 149 (372)
T ss_pred EEeeccc-cCHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccc
Confidence 9999997 58888886433 389999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++..... .....+++.|+|||.+.+... ++.++||||+||++|||++|+.||...
T Consensus 150 a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~pf~~~ 208 (372)
T cd07853 150 ARVEEPDESKHMTQEVVTQYYRAPEILMGSRH--------YTSAVDIWSVGCIFAELLGRRILFQAQ 208 (372)
T ss_pred eeecccCccccCCCCCcCCCcCCHHHHcCCCC--------CCcHHHHHhHHHHHHHHHcCCCCCCCC
Confidence 9765321 223457889999998754322 478999999999999999999999544
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=305.85 Aligned_cols=190 Identities=16% Similarity=0.115 Sum_probs=158.0
Q ss_pred eecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc---CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 542 IKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV---SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 542 ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l---~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
||+|+||+||+|+. .+++.||||++...... ...+.+|..++.+. +||||+++++++.. .+..|+||||++
T Consensus 1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~-~~~~~lv~e~~~ 79 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQT-DSDLYLVTDYMS 79 (330)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEec-CCeEEEEEcCCC
Confidence 69999999999984 56899999999654322 23456677777766 69999999987655 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC--
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-- 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-- 691 (766)
+|+|.+++.+.. .+++..+..++.||++||+|||+. +|+||||||+|||++.++.+||+|||+++...
T Consensus 80 ~g~L~~~l~~~~-------~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~ 149 (330)
T cd05586 80 GGELFWHLQKEG-------RFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTD 149 (330)
T ss_pred CChHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCC
Confidence 999999987543 389999999999999999999997 99999999999999999999999999987542
Q ss_pred -CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 -GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 -~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.......||..|+|||.+..... ++.++||||+||++|||+||+.||...+
T Consensus 150 ~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DvwslGvil~elltG~~Pf~~~~ 201 (330)
T cd05586 150 NKTTNTFCGTTEYLAPEVLLDEKG--------YTKHVDFWSLGVLVFEMCCGWSPFYAED 201 (330)
T ss_pred CCCccCccCCccccCHHHHcCCCC--------CCCccceeccccEEEEeccCCCCCCCCC
Confidence 22334568999999998754321 4789999999999999999999996543
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=327.36 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=168.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||.||+|+. .+|+.||||++...... .++|.+|++++++++|||||++++++.+ ++..|+|
T Consensus 2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d-~~~lyLV 80 (932)
T PRK13184 2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSD-GDPVYYT 80 (932)
T ss_pred CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEee-CCEEEEE
Confidence 5788999999999999999995 56899999999653221 4579999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCC----CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 609 YKYMPNGDLSSSLYRKTNT----EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
|||+++|+|.+++...... ......+++.++..++.||++||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 81 MEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDF 157 (932)
T PRK13184 81 MPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDW 157 (932)
T ss_pred EEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEec
Confidence 9999999999998642110 11123477888999999999999999997 9999999999999999999999999
Q ss_pred hhhhhcCCC---------------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCC
Q 004248 685 SEVCAQGGD---------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN 743 (766)
Q Consensus 685 G~a~~~~~~---------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~ 743 (766)
|+++..... .....||+.|+|||...+.. ++.++|||||||++|||+||+
T Consensus 158 GLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~---------~S~kSDIWSLGVILyELLTG~ 228 (932)
T PRK13184 158 GAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVP---------ASESTDIYALGVILYQMLTLS 228 (932)
T ss_pred CcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCC---------CCcHhHHHHHHHHHHHHHHCC
Confidence 999754100 01235899999999875543 478999999999999999999
Q ss_pred CCCCC
Q 004248 744 HLNLS 748 (766)
Q Consensus 744 ~p~~~ 748 (766)
.||..
T Consensus 229 ~PF~~ 233 (932)
T PRK13184 229 FPYRR 233 (932)
T ss_pred CCCCC
Confidence 99954
|
|
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=300.34 Aligned_cols=195 Identities=19% Similarity=0.312 Sum_probs=163.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc----EEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI----PVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
.+|+..+.||+|+||.||+|++ .++. .||||.++.... ..++|.+|+.+++.++||||++++|+|.. +..+
T Consensus 7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~--~~~~ 84 (316)
T cd05108 7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT--STVQ 84 (316)
T ss_pred hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC--CCce
Confidence 4688999999999999999984 3443 489999864332 25679999999999999999999998875 3578
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|+||+++|+|.+++.+... .+++..+..++.||+.||+|||+. +|+||||||+|||+++++.+||+|||+
T Consensus 85 ~v~e~~~~g~l~~~l~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~ 155 (316)
T cd05108 85 LITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGL 155 (316)
T ss_pred eeeecCCCCCHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEccccc
Confidence 99999999999999976432 488999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCCc-----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 687 VCAQGGDAH-----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 687 a~~~~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
++....... ...++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 156 a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Di~slGv~l~el~t~g~~p~~~ 214 (316)
T cd05108 156 AKLLGADEKEYHAEGGKVPIKWMALESILHRI---------YTHQSDVWSYGVTVWELMTFGSKPYDG 214 (316)
T ss_pred cccccCCCcceeccCCccceeecChHHhccCC---------CCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence 987632211 122356799999875443 5789999999999999998 9999854
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=308.57 Aligned_cols=204 Identities=22% Similarity=0.286 Sum_probs=165.4
Q ss_pred hCCCCccceeecCCcceEEEEEE------cCCcEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMEREN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 603 (766)
.++|+..+.||+|+||.||+|+. .++..||||+++.... ..+.+.+|+++++.+ +|||||+++++|.. .+
T Consensus 34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~-~~ 112 (375)
T cd05104 34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV-GG 112 (375)
T ss_pred hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc-CC
Confidence 34688889999999999999973 3467899999865432 245789999999999 89999999998866 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCC-------------------------------------------------------
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTE------------------------------------------------------- 628 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~------------------------------------------------------- 628 (766)
..++|||||++|+|.+++++.....
T Consensus 113 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (375)
T cd05104 113 PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSG 192 (375)
T ss_pred cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccc
Confidence 8999999999999999997532100
Q ss_pred -------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCc
Q 004248 629 -------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH 695 (766)
Q Consensus 629 -------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~ 695 (766)
.....++|.++..++.||++||+|||+. +|+||||||+|||+++++.+||+|||+++.......
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~ 269 (375)
T cd05104 193 SYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDSN 269 (375)
T ss_pred eecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCccc
Confidence 0112589999999999999999999997 999999999999999999999999999976532211
Q ss_pred -----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 696 -----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 696 -----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
...++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 270 ~~~~~~~~~~~~y~aPE~~~~~~---------~~~~sDi~slG~~l~ellt~g~~p~~~~ 320 (375)
T cd05104 270 YVVKGNARLPVKWMAPESIFNCV---------YTFESDVWSYGILLWEIFSLGSSPYPGM 320 (375)
T ss_pred ccccCCCCCCcceeChhHhcCCC---------CCCCCCHHHHHHHHHHHHhcCCCCCCCC
Confidence 122345699999876543 4789999999999999998 88888543
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=319.99 Aligned_cols=203 Identities=14% Similarity=0.171 Sum_probs=169.9
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCC----
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMEREN---- 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~---- 603 (766)
..++|...+.||+|+||.||+|+ ..+|+.||||+++..... ...+.+|+.++..++|+||+++++.+...+.
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~ 109 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE 109 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence 34689999999999999999998 567999999999765432 4568899999999999999998876543211
Q ss_pred ---cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 604 ---EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 604 ---~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
.+++||||+++|+|.+++..+.. ....+++.....++.|++.||+|||+. +|+||||||+|||+++++.+|
T Consensus 110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~---~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vk 183 (496)
T PTZ00283 110 NVLMIALVLDYANAGDLRQEIKSRAK---TNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVK 183 (496)
T ss_pred cceEEEEEEeCCCCCcHHHHHHHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEE
Confidence 36899999999999999975432 123589999999999999999999997 999999999999999999999
Q ss_pred eccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||+++.... ......||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 184 L~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~---------~s~k~DVwSlGvilyeLltG~~Pf~~~ 248 (496)
T PTZ00283 184 LGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKP---------YSKKADMFSLGVLLYELLTLKRPFDGE 248 (496)
T ss_pred EEecccCeeccccccccccccccCCcceeCHHHhCCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 999999976532 123456899999999886544 478999999999999999999999643
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=288.64 Aligned_cols=197 Identities=19% Similarity=0.201 Sum_probs=166.6
Q ss_pred CCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+|+..+.||.|.-|+||.+.+. ++..+|+|++++.... ..+...|-+||+.++||.+..||+.+. .++..++||
T Consensus 78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fe-t~~~~cl~m 156 (459)
T KOG0610|consen 78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFE-TDKYSCLVM 156 (459)
T ss_pred HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheee-ccceeEEEE
Confidence 3556789999999999999965 4689999999876543 346777999999999999999999665 467899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||+||||..+.+++.+ ..+++..+..||.+|+.||+|||-. +||.|||||+||||-++|++-|+||-++..
T Consensus 157 eyCpGGdL~~LrqkQp~-----~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~ 228 (459)
T KOG0610|consen 157 EYCPGGDLHSLRQKQPG-----KRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLR 228 (459)
T ss_pred ecCCCccHHHHHhhCCC-----CccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeecccccc
Confidence 99999999999887654 4599999999999999999999986 999999999999999999999999987632
Q ss_pred cC------------------------------------C-----------------------CCccceeeecccCCCCCC
Q 004248 690 QG------------------------------------G-----------------------DAHQSRITRLLRLPQSSE 710 (766)
Q Consensus 690 ~~------------------------------------~-----------------------~~~~~~~t~~y~aPe~~~ 710 (766)
.. . .....+||..|.|||++.
T Consensus 229 ~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~ 308 (459)
T KOG0610|consen 229 CPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIR 308 (459)
T ss_pred CCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeee
Confidence 10 0 001246899999999998
Q ss_pred CCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 711 QGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 711 ~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+..+| .++|+|+|||.+|||+.|+-||...
T Consensus 309 G~GHg---------sAVDWWtfGIflYEmLyG~TPFKG~ 338 (459)
T KOG0610|consen 309 GEGHG---------SAVDWWTFGIFLYEMLYGTTPFKGS 338 (459)
T ss_pred cCCCC---------chhhHHHHHHHHHHHHhCCCCcCCC
Confidence 87764 5789999999999999999999543
|
|
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=290.90 Aligned_cols=197 Identities=16% Similarity=0.328 Sum_probs=168.3
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..++||+|+||.||+|...+++.||+|.+.......+.+.+|+.++++++||||+++++++.. .+..++||||++
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~ 84 (261)
T cd05072 6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK-EEPIYIITEYMA 84 (261)
T ss_pred HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcC-CCCcEEEEecCC
Confidence 4688899999999999999998888899999987655556789999999999999999999987655 567899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++++... ..+++.++..++.|++.||+|||+. +++||||||+||++++++.+||+|||+++.....
T Consensus 85 ~~~L~~~l~~~~~-----~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~ 156 (261)
T cd05072 85 KGSLLDFLKSDEG-----GKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDN 156 (261)
T ss_pred CCcHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCC
Confidence 9999999975432 3489999999999999999999987 9999999999999999999999999999865332
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. ....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 157 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~l~t~g~~p~~~ 207 (261)
T cd05072 157 EYTAREGAKFPIKWTAPEAINFGS---------FTIKSDVWSFGILLYEIVTYGKIPYPG 207 (261)
T ss_pred ceeccCCCccceecCCHHHhccCC---------CChhhhhhhhHHHHHHHHccCCCCCCC
Confidence 1 1223456799999875443 4679999999999999999 9999853
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=294.51 Aligned_cols=189 Identities=20% Similarity=0.240 Sum_probs=160.0
Q ss_pred eecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||.||++.. .+|+.||+|++...... .+.+..|++++++++||||+++++++.. +...|+||||+++|+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-~~~~~lv~e~~~g~~ 79 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-KTHLCLVMSLMNGGD 79 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-CCeEEEEEecCCCCC
Confidence 69999999999984 56999999999653322 3456779999999999999999986654 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC--C
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--A 694 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--~ 694 (766)
|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++...... .
T Consensus 80 L~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~ 151 (277)
T cd05607 80 LKYHIYNVGE-----RGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTI 151 (277)
T ss_pred HHHHHHhccc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCcee
Confidence 9998865432 3489999999999999999999997 9999999999999999999999999998765322 2
Q ss_pred ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 695 ~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
....++..|+|||...... ++.++||||+||++|||++|+.||..
T Consensus 152 ~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslGv~l~el~~g~~p~~~ 196 (277)
T cd05607 152 TQRAGTNGYMAPEILKEEP---------YSYPVDWFAMGCSIYEMVAGRTPFKD 196 (277)
T ss_pred eccCCCCCccCHHHHccCC---------CCCchhHHHHHHHHHHHHhCCCCCCC
Confidence 2345788999999876544 46899999999999999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=294.09 Aligned_cols=206 Identities=18% Similarity=0.239 Sum_probs=171.6
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec-----CC
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER-----EN 603 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~-----~~ 603 (766)
.+++.|+..+.||+|+||.||+|.. .+++.||+|++........++.+|+.++.++ +||||+++++++... +.
T Consensus 3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~ 82 (272)
T cd06637 3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDD 82 (272)
T ss_pred ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCc
Confidence 3567788889999999999999985 5688999999976655567899999999999 799999999987642 23
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+||||+++|+|.+++..... ..++|..+..++.|++.|++|||+. +|+||||||+||++++++.+||+|
T Consensus 83 ~~~iv~e~~~~~~L~~~l~~~~~-----~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~D 154 (272)
T cd06637 83 QLWLVMEFCGAGSVTDLIKNTKG-----NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVD 154 (272)
T ss_pred EEEEEEEcCCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEcc
Confidence 58999999999999999975432 3489999999999999999999997 999999999999999999999999
Q ss_pred chhhhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++.... ......++..|+|||.+......... ++.++|||||||++|||++|+.||..
T Consensus 155 fg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~----~~~~~Dv~slGv~l~el~~g~~p~~~ 218 (272)
T cd06637 155 FGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDAT----YDFKSDLWSLGITAIEMAEGAPPLCD 218 (272)
T ss_pred CCCceecccccccCCcccccccccCHhHhccccCcCCC----CCchhhHHHHHHHHHHHHhCCCCccc
Confidence 999976532 22334678899999987543211111 57899999999999999999999954
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=301.87 Aligned_cols=194 Identities=23% Similarity=0.377 Sum_probs=165.7
Q ss_pred CCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 536 FSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
....++||+|.||+|..+....+..||||.++..... +.+|.+|+++|.+++|||||+++|+|.. ++.+++|+|||+
T Consensus 540 L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~-DePicmI~EYmE 618 (807)
T KOG1094|consen 540 LRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQ-DDPLCMITEYME 618 (807)
T ss_pred eehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeec-CCchHHHHHHHh
Confidence 4567899999999999999999999999999876554 6799999999999999999999999987 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC-C
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG-G 692 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~-~ 692 (766)
+|||.+++.++.. ...+-....+||.|||.||+||.+- ++||||+.++|||+|.++++||+|||++|.+. +
T Consensus 619 nGDLnqFl~ahea-----pt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg 690 (807)
T KOG1094|consen 619 NGDLNQFLSAHEL-----PTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSG 690 (807)
T ss_pred cCcHHHHHHhccC-----cccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccC
Confidence 9999999987643 1134556678999999999999986 99999999999999999999999999999652 2
Q ss_pred CCcc----ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc--CCCCCC
Q 004248 693 DAHQ----SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF--NNHLNL 747 (766)
Q Consensus 693 ~~~~----~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt--G~~p~~ 747 (766)
+... .+-...|||+|.+..+. +|+++|||+|||++||+++ ..+||.
T Consensus 691 ~yy~vqgr~vlpiRwmawEsillgk---------FttaSDvWafgvTlwE~~~~C~e~Py~ 742 (807)
T KOG1094|consen 691 DYYRVQGRAVLPIRWMAWESILLGK---------FTTASDVWAFGVTLWEVFMLCREQPYS 742 (807)
T ss_pred CceeeecceeeeeeehhHHHHHhcc---------ccchhhhhhhHHHHHHHHHHHhhCchh
Confidence 2221 22345799999887665 6899999999999999876 677884
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=306.07 Aligned_cols=191 Identities=20% Similarity=0.271 Sum_probs=165.7
Q ss_pred eeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChh
Q 004248 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~ 618 (766)
++|+|.||+||.|+ +.+...+|||.+...... .+-...|+.+-++++|.|||+.+|.|.+ ++..-+.||-+|||+|.
T Consensus 582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~se-nGf~kIFMEqVPGGSLS 660 (1226)
T KOG4279|consen 582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSE-NGFFKIFMEQVPGGSLS 660 (1226)
T ss_pred EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCC-CCeEEEEeecCCCCcHH
Confidence 69999999999999 566789999999765543 4457789999999999999999997655 56788999999999999
Q ss_pred hhhhccCCCCCcCCCC--CHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CCCcEEeccchhhhhcC---C
Q 004248 619 SSLYRKTNTEDDLQSL--DWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DKFEVRLGSLSEVCAQG---G 692 (766)
Q Consensus 619 ~~l~~~~~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFG~a~~~~---~ 692 (766)
++|+.+=+ ++ .+.+.-.+.+||.+||.|||+. .|||||||-.|||++ -.|.+||+|||.++... .
T Consensus 661 sLLrskWG------PlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP 731 (1226)
T KOG4279|consen 661 SLLRSKWG------PLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINP 731 (1226)
T ss_pred HHHHhccC------CCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCc
Confidence 99986433 34 6777888999999999999998 999999999999997 57999999999998762 3
Q ss_pred CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
-+.+..||..|||||++..+..|| +.++|||||||++.||+|||+||..
T Consensus 732 ~TETFTGTLQYMAPEvIDqG~RGY-------G~aADIWS~GCT~vEMATGrPPF~E 780 (1226)
T KOG4279|consen 732 CTETFTGTLQYMAPEVIDQGPRGY-------GKAADIWSFGCTMVEMATGRPPFVE 780 (1226)
T ss_pred cccccccchhhhChHhhccCCcCC-------CchhhhhhccceeEeeccCCCCeee
Confidence 345678999999999999888875 7799999999999999999999953
|
|
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=304.41 Aligned_cols=196 Identities=17% Similarity=0.200 Sum_probs=164.5
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC-----
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE----- 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----- 602 (766)
..++|+..+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|+.++++++||||+++++++....
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 98 (359)
T cd07876 19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF 98 (359)
T ss_pred hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence 347899999999999999999984 5689999999964322 2457889999999999999999999775422
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...|+||||+++ +|.+.++. .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 99 ~~~~lv~e~~~~-~l~~~~~~---------~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~ 165 (359)
T cd07876 99 QDVYLVMELMDA-NLCQVIHM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKIL 165 (359)
T ss_pred ceeEEEEeCCCc-CHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEe
Confidence 247999999975 67766642 278889999999999999999998 99999999999999999999999
Q ss_pred cchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++.... ......+|+.|+|||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 166 Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwSlG~il~el~tg~~pf~~~ 225 (359)
T cd07876 166 DFGLARTACTNFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGELVKGSVIFQGT 225 (359)
T ss_pred cCCCccccccCccCCCCcccCCCCCchhccCCC---------CCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 9999976532 233456789999999886544 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=282.51 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=171.3
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+++|+|.||+|-.++ ..+|+.+|||++++.-.- ...-+.|-++|+..+||.+..+.. .++..+.+++|
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKY-sFQt~drlCFV 246 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKY-SFQTQDRLCFV 246 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhh-hhccCceEEEE
Confidence 468889999999999999998 678999999999765432 224567999999999999988874 45556789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+.||.|.-+|.+.+. +++.....+-.+|+.||.|||++ +||.||+|.+|.|+|.+|++||+|||+++
T Consensus 247 MeyanGGeLf~HLsrer~-------FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCK 316 (516)
T KOG0690|consen 247 MEYANGGELFFHLSRERV-------FSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCK 316 (516)
T ss_pred EEEccCceEeeehhhhhc-------ccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccch
Confidence 999999999999976543 88888889999999999999998 99999999999999999999999999998
Q ss_pred hc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.- +....+.+||+.|.|||+++...|| ..+|+|.+|||+|||+.|+.||...
T Consensus 317 E~I~~g~t~kTFCGTPEYLAPEVleDnDYg---------raVDWWG~GVVMYEMmCGRLPFyn~ 371 (516)
T KOG0690|consen 317 EEIKYGDTTKTFCGTPEYLAPEVLEDNDYG---------RAVDWWGVGVVMYEMMCGRLPFYNK 371 (516)
T ss_pred hcccccceeccccCChhhcCchhhcccccc---------ceeehhhhhHHHHHHHhccCccccc
Confidence 63 5667889999999999999877765 5789999999999999999999543
|
|
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=289.79 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=168.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||.||+|+. .+++.||+|++...... .+.+.+|+.++++++||||+++++++.. ++..|+||||
T Consensus 9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~-~~~~~iv~e~ 87 (267)
T cd06646 9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLS-REKLWICMEY 87 (267)
T ss_pred hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEe-CCEEEEEEeC
Confidence 4688899999999999999994 67899999998754433 4568899999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.++++... .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++...
T Consensus 88 ~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~ 157 (267)
T cd06646 88 CGGGSLQDIYHVTG-------PLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKIT 157 (267)
T ss_pred CCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeec
Confidence 99999999987543 389999999999999999999997 99999999999999999999999999997653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|+|||.+.....+. ++.++|||||||++|||++|+.||...
T Consensus 158 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~------~~~~~Dvws~G~il~el~~g~~p~~~~ 212 (267)
T cd06646 158 ATIAKRKSFIGTPYWMAPEVAAVEKNGG------YNQLCDIWAVGITAIELAELQPPMFDL 212 (267)
T ss_pred ccccccCccccCccccCHhHcccccCCC------CcchhhHHHHHHHHHHHHhCCCCcccc
Confidence 22 22345778899999874322221 478999999999999999999998543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=287.79 Aligned_cols=199 Identities=17% Similarity=0.304 Sum_probs=169.1
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++|+..+.||+|+||.||+|...+++.||+|.++......++|.+|++++++++||||+++++++.. .+..++||||+
T Consensus 5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~ 83 (261)
T cd05068 5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTL-EEPIYIVTELM 83 (261)
T ss_pred hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEec-CCCeeeeeecc
Confidence 35688889999999999999998778899999997665557789999999999999999999997765 56799999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++..... ..++|.++..++.|++.|++|||+. +|+||||||+||++++++.+||+|||+++....
T Consensus 84 ~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~ 155 (261)
T cd05068 84 KYGSLLEYLQGGAG-----RALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKE 155 (261)
T ss_pred cCCcHHHHHhccCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccC
Confidence 99999999975432 3489999999999999999999987 999999999999999999999999999986642
Q ss_pred CC-ccce---eeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 693 DA-HQSR---ITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 693 ~~-~~~~---~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.. .... .+..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 156 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~t~g~~p~~~~ 208 (261)
T cd05068 156 DIYEAREGAKFPIKWTAPEAALYNR---------FSIKSDVWSFGILLTEIVTYGRMPYPGM 208 (261)
T ss_pred CcccccCCCcCceeccCccccccCC---------CCchhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 21 1111 234699999875443 4789999999999999999 99998543
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=294.38 Aligned_cols=200 Identities=18% Similarity=0.171 Sum_probs=174.3
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+-|+..+.||+|.|++|-.|+ .=+|.+||||++++.+.. ...+.+|++.|+-++|||||+||.+.. ....+|||+
T Consensus 18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViD-TQTKlyLiL 96 (864)
T KOG4717|consen 18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVID-TQTKLYLIL 96 (864)
T ss_pred eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhc-ccceEEEEE
Confidence 446777899999999999998 568999999999876654 457889999999999999999999554 456799999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~ 688 (766)
|.-++|||+++|.++.. .+.+.-..+|+.||+.|+.|+|.- .+|||||||+||..-+ -|-+|+.|||++.
T Consensus 97 ELGD~GDl~DyImKHe~------Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSN 167 (864)
T KOG4717|consen 97 ELGDGGDLFDYIMKHEE------GLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSN 167 (864)
T ss_pred EecCCchHHHHHHhhhc------cccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccc
Confidence 99999999999987653 388999999999999999999986 8999999999998865 5889999999986
Q ss_pred hc--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 689 AQ--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 689 ~~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
.+ +....+++|+..|.|||++.+..|.. +++||||+|||||-++.|+.||...+.
T Consensus 168 kf~PG~kL~TsCGSLAYSAPEILLGDsYDA--------PAVDiWSLGVILyMLVCGq~PFqeAND 224 (864)
T KOG4717|consen 168 KFQPGKKLTTSCGSLAYSAPEILLGDSYDA--------PAVDIWSLGVILYMLVCGQPPFQEAND 224 (864)
T ss_pred cCCCcchhhcccchhhccCchhhhcCccCC--------cchhhhHHHHHHHHHHhCCCccccccc
Confidence 55 45677889999999999998887753 789999999999999999999965443
|
|
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=300.85 Aligned_cols=197 Identities=18% Similarity=0.176 Sum_probs=171.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~ 606 (766)
...|+..+.||+|.||.||+++. .+|+.+|+|.+.+.... .+.+.+|+++|+++. |||||.+++.+.. ...++
T Consensus 34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~-~~~~~ 112 (382)
T KOG0032|consen 34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFED-PDSVY 112 (382)
T ss_pred cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEc-CCeEE
Confidence 34577789999999999999995 56999999999765543 368999999999998 9999999997765 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC----CcEEec
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK----FEVRLG 682 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~----~~~kl~ 682 (766)
+|||+|.||+|.+.|.+. .+++.+...++.|++.|+.|||+. +|+|||+||+|+|+... +.+|++
T Consensus 113 lvmEL~~GGeLfd~i~~~--------~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~ 181 (382)
T KOG0032|consen 113 LVMELCEGGELFDRIVKK--------HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLI 181 (382)
T ss_pred EEEEecCCchHHHHHHHc--------cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEe
Confidence 999999999999999754 189999999999999999999997 99999999999999643 579999
Q ss_pred cchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 683 SLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 683 DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|||++..... ..+..+||+.|+|||+..... ++.++||||+||++|.|++|.+||...+
T Consensus 182 DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~---------y~~~~DiWS~Gvi~yiLL~G~~PF~~~~ 242 (382)
T KOG0032|consen 182 DFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRP---------YGDEVDVWSIGVILYILLSGVPPFWGET 242 (382)
T ss_pred eCCCceEccCCceEeeecCCccccCchhhcCCC---------CCcccchhHHHHHHHHHhhCCCCCcCCC
Confidence 9999988754 466789999999999987554 4679999999999999999999996443
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=306.12 Aligned_cols=190 Identities=16% Similarity=0.290 Sum_probs=165.0
Q ss_pred cceeecCCcceEEEEEE-cCCcEEEEEEeecccc---C--HHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEEEEee
Q 004248 539 ANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---K--TEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFLVYKY 611 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~lV~Ey 611 (766)
..+||+|+|-+||||.. .+|..||.-.++.... . .++|..|+.+|+.|+|||||+++.++.+.. ....+|+|.
T Consensus 45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL 124 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL 124 (632)
T ss_pred hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence 46899999999999995 5688999766643322 2 478999999999999999999999877643 357899999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhhhc
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVCAQ 690 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~~~ 690 (766)
|..|+|..|+.+.+. ++....+.+++||.+||.|||++ .|+|||||||.+||+|+. -|.+||+|.|+|...
T Consensus 125 ~TSGtLr~Y~kk~~~-------vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~ 196 (632)
T KOG0584|consen 125 FTSGTLREYRKKHRR-------VNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLL 196 (632)
T ss_pred ccCCcHHHHHHHhcc-------CCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHh
Confidence 999999999987765 78889999999999999999996 789999999999999985 589999999999988
Q ss_pred CCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 691 GGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 691 ~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
... ....+||+-+||||.++ .. |++.+||||||+.++||+|+..|+
T Consensus 197 r~s~aksvIGTPEFMAPEmYE-E~---------YnE~VDVYaFGMCmLEMvT~eYPY 243 (632)
T KOG0584|consen 197 RKSHAKSVIGTPEFMAPEMYE-EN---------YNELVDVYAFGMCMLEMVTSEYPY 243 (632)
T ss_pred hccccceeccCccccChHHHh-hh---------cchhhhhhhhhHHHHHHHhccCCh
Confidence 554 44468999999999986 22 589999999999999999999998
|
|
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=292.38 Aligned_cols=196 Identities=21% Similarity=0.196 Sum_probs=166.2
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|+..+.||+|+||+||+|.. .+++.||+|.+...... .+.+.+|++++++++|+||+++++++.. ++..++|||
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-~~~~~lv~e 80 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYET-KDALCLVLT 80 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEec-CCEEEEEEE
Confidence 66778999999999999985 57899999999754322 3457889999999999999999987655 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++...
T Consensus 81 ~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~ 152 (285)
T cd05632 81 IMNGGDLKFHIYNMGN-----PGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKI 152 (285)
T ss_pred eccCccHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceec
Confidence 9999999998865432 2489999999999999999999987 9999999999999999999999999998654
Q ss_pred CC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......++..|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 153 ~~~~~~~~~~g~~~~~aPE~~~~~~---------~~~~~Di~slG~~l~~l~~g~~P~~~~ 204 (285)
T cd05632 153 PEGESIRGRVGTVGYMAPEVLNNQR---------YTLSPDYWGLGCLIYEMIEGQSPFRGR 204 (285)
T ss_pred CCCCcccCCCCCcCccChHHhcCCC---------CCcccchHHHHHHHHHHHhCCCCCCCC
Confidence 32 223346789999999876543 467999999999999999999999643
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=279.20 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=167.8
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+.|+..++||+|.|+.||++. .++|+.+|+|.++.... ..++..+|++|-+.++|||||++.+-+.+ ++..|+|+
T Consensus 11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~-~~~~ylvF 89 (355)
T KOG0033|consen 11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-ESFHYLVF 89 (355)
T ss_pred hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcc-cceeEEEE
Confidence 457777899999999999997 67899999999865443 35788999999999999999999996654 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEEeccchh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVRLGSLSE 686 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl~DFG~ 686 (766)
|+|+||+|..-|-.+. .+++...-.++.||+.||.|+|.+ +|||||+||+|+|+-+. --+|++|||+
T Consensus 90 e~m~G~dl~~eIV~R~-------~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGv 159 (355)
T KOG0033|consen 90 DLVTGGELFEDIVARE-------FYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGL 159 (355)
T ss_pred ecccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccce
Confidence 9999999987775542 378888899999999999999998 99999999999999643 3499999999
Q ss_pred hhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|...+ .......||+.|+|||+.....| +..+|||+-|||||-++.|+.||..
T Consensus 160 Ai~l~~g~~~~G~~GtP~fmaPEvvrkdpy---------~kpvDiW~cGViLfiLL~G~~PF~~ 214 (355)
T KOG0033|consen 160 AIEVNDGEAWHGFAGTPGYLSPEVLKKDPY---------SKPVDIWACGVILYILLVGYPPFWD 214 (355)
T ss_pred EEEeCCccccccccCCCcccCHHHhhcCCC---------CCcchhhhhhHHHHHHHhCCCCCCC
Confidence 98774 23556789999999999877664 5688999999999999999999965
|
|
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=292.79 Aligned_cols=195 Identities=21% Similarity=0.208 Sum_probs=166.1
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|+..++||+|+||.||+|.. .+++.||||.+...... .+.+.+|+.++++++|+||+++++.+.+ ++..++|||
T Consensus 2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-~~~~~lv~e 80 (285)
T cd05630 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYET-KDALCLVLT 80 (285)
T ss_pred ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEec-CCEEEEEEE
Confidence 67788999999999999984 57899999998754322 3457889999999999999999987765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++...
T Consensus 81 ~~~g~~L~~~l~~~~~-----~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~ 152 (285)
T cd05630 81 LMNGGDLKFHIYHMGE-----AGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHV 152 (285)
T ss_pred ecCCCcHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeec
Confidence 9999999999865432 3489999999999999999999987 9999999999999999999999999998765
Q ss_pred CCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
... .....++..|+|||...... ++.++||||+||++|||++|+.||..
T Consensus 153 ~~~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~DiwslG~~l~~l~~g~~Pf~~ 203 (285)
T cd05630 153 PEGQTIKGRVGTVGYMAPEVVKNER---------YTFSPDWWALGCLLYEMIAGQSPFQQ 203 (285)
T ss_pred CCCccccCCCCCccccChHHHcCCC---------CCCccccHHHHHHHHHHHhCCCCCCC
Confidence 322 22346788999999876543 46799999999999999999999964
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=295.02 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|.. .++..||+|.+...... .+++.+|++++++++||||+++++++.. ++..++|||
T Consensus 1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 79 (308)
T cd06615 1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYS-DGEISICME 79 (308)
T ss_pred CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-CCEEEEEee
Confidence 4688899999999999999984 56889999988654222 4568899999999999999999998766 678999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+.+ .+++..+..++.|+++||+|||+. .+++||||||+||++++++.+||+|||++...
T Consensus 80 y~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 150 (308)
T cd06615 80 HMDGGSLDQVLKKAG-------RIPENILGKISIAVLRGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 150 (308)
T ss_pred ccCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhh--CCEEECCCChHHEEEecCCcEEEccCCCcccc
Confidence 999999999997543 388999999999999999999973 27999999999999999999999999998765
Q ss_pred CC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......++..|+|||...+.. ++.++|||||||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~~~~aPE~~~~~~---------~~~~~DiwslG~~l~~l~~g~~p~~~~ 201 (308)
T cd06615 151 IDSMANSFVGTRSYMSPERLQGTH---------YTVQSDIWSLGLSLVEMAIGRYPIPPP 201 (308)
T ss_pred cccccccCCCCcCccChhHhcCCC---------CCccchHHHHHHHHHHHHhCCCCCCCc
Confidence 32 233456788999999875433 467999999999999999999998543
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=286.15 Aligned_cols=197 Identities=21% Similarity=0.332 Sum_probs=167.0
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|... |..||+|.++... ..+.|.+|+.++++++|+|++++++++...++..++||||++
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~ 83 (256)
T cd05082 6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 83 (256)
T ss_pred HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCc-hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCC
Confidence 36888899999999999999765 7789999986432 356799999999999999999999987665567899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+... ..++|..+..++.|++.||+|||+. +|+||||||+||++++++.+|++|||+++.....
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~ 155 (256)
T cd05082 84 KGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 155 (256)
T ss_pred CCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceecccc
Confidence 9999999975432 3489999999999999999999997 9999999999999999999999999998865433
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
......+..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 156 ~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~i~~~l~~~g~~p~~~~ 203 (256)
T cd05082 156 QDTGKLPVKWTAPEALREKK---------FSTKSDVWSFGILLWEIYSFGRVPYPRI 203 (256)
T ss_pred CCCCccceeecCHHHHccCC---------CCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 33344556799999775433 4789999999999999998 99998543
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=293.27 Aligned_cols=216 Identities=19% Similarity=0.176 Sum_probs=177.4
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER 601 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 601 (766)
++++++..++++|+..+.||+|+||.||+|.. .+++.+|+|.+.......+++.+|+.+++++ +|||++++++++...
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~ 91 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKA 91 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence 55667777889999999999999999999995 6789999999875544456788999999999 899999999988653
Q ss_pred C----CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 602 E----NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 602 ~----~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
+ +..|+||||+++|+|.++++.... ....++|..+..++.|++.||+|||+. +|+||||||+||++++++
T Consensus 92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~ 165 (291)
T cd06639 92 DKLVGGQLWLVLELCNGGSVTELVKGLLI---CGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEG 165 (291)
T ss_pred cccCCCeeEEEEEECCCCcHHHHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCC
Confidence 2 358999999999999998864221 113489999999999999999999987 999999999999999999
Q ss_pred cEEeccchhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+||+|||+++..... .....++..|+|||.+....... ..++.++|||||||++|||++|+.||...
T Consensus 166 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~----~~~~~~~Di~slGvi~~el~~g~~p~~~~ 236 (291)
T cd06639 166 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYD----YSYDARCDVWSLGITAIELGDGDPPLFDM 236 (291)
T ss_pred CEEEeecccchhcccccccccCccCCccccChhhhcCCCCcc----cccCCccchHHHHHHHHHHhhCCCCCCCC
Confidence 9999999998765321 22345678899999875432111 11578999999999999999999999643
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=300.22 Aligned_cols=203 Identities=19% Similarity=0.251 Sum_probs=165.6
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|+..+.||+|+||.||+|.. .+++.||+|+++..... .+.+.+|++++.++ +||||++++++|...+..
T Consensus 7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~ 86 (337)
T cd05054 7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP 86 (337)
T ss_pred HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence 4688899999999999999963 23578999998654322 35688899999999 899999999988766667
Q ss_pred EEEEEeeCCCCChhhhhhccCCC------------------------------------------------------CCc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT------------------------------------------------------EDD 630 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~------------------------------------------------------~~~ 630 (766)
.++||||+++|+|.+++...... ...
T Consensus 87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (337)
T cd05054 87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY 166 (337)
T ss_pred EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence 99999999999999998643210 000
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-----CccceeeecccC
Q 004248 631 LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRL 705 (766)
Q Consensus 631 ~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~a 705 (766)
...++|.++..++.||+.||+|||+. +|+||||||+||++++++.+||+|||+++..... .....++..|+|
T Consensus 167 ~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~a 243 (337)
T cd05054 167 KEPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 243 (337)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccC
Confidence 12689999999999999999999997 9999999999999999999999999999865221 112234567999
Q ss_pred CCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 706 PQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 706 Pe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
||...... ++.++|||||||++|||++ |+.||..
T Consensus 244 PE~~~~~~---------~~~~~Di~SlGv~l~el~t~g~~p~~~ 278 (337)
T cd05054 244 PESIFDKV---------YTTQSDVWSFGVLLWEIFSLGASPYPG 278 (337)
T ss_pred cHHhcCCC---------CCccccHHHHHHHHHHHHHcCCCCCCC
Confidence 99876543 5789999999999999998 9999854
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=285.86 Aligned_cols=216 Identities=19% Similarity=0.270 Sum_probs=170.1
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhc--CCCCcccceeEEEecC---CcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV--SHARLVPLLGHCMERE---NEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l--~H~niv~l~~~~~~~~---~~~~l 607 (766)
.+.....+.||+|.||+||+|.+. |+.||||++.... .+.+.||.+|.+.+ +|+||..+++.-..+. .++||
T Consensus 210 arqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~srd--E~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwL 286 (513)
T KOG2052|consen 210 ARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSRD--ERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWL 286 (513)
T ss_pred hheeEEEEEecCccccceeecccc-CCceEEEEecccc--hhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEE
Confidence 345677899999999999999987 5689999996443 56799999998875 9999999998543222 26899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-----CCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-----ECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-----~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
|.||-+.|||+|+|.+. .++-...++++..+|.||+|||- +..|.|.|||||+.|||+.+++...|+
T Consensus 287 vTdYHe~GSL~DyL~r~--------tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IA 358 (513)
T KOG2052|consen 287 VTDYHEHGSLYDYLNRN--------TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA 358 (513)
T ss_pred eeecccCCcHHHHHhhc--------cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEe
Confidence 99999999999999763 38999999999999999999994 346899999999999999999999999
Q ss_pred cchhhhhcCC-------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc----------CCCC
Q 004248 683 SLSEVCAQGG-------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF----------NNHL 745 (766)
Q Consensus 683 DFG~a~~~~~-------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt----------G~~p 745 (766)
|+|+|-.... .....+||..|||||++..... . -.++.-..+||||||.|+||++. -+.|
T Consensus 359 DLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin-~--~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~P 435 (513)
T KOG2052|consen 359 DLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETIN-M--KHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLP 435 (513)
T ss_pred eceeeEEecccCCcccCCCCCccceeeccChHHhhhhcC-h--hhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCC
Confidence 9999965422 2446789999999997753211 0 00112357899999999999985 2468
Q ss_pred CCCCccccccceeeEEE
Q 004248 746 NLSSRFGVKQQTTIIKL 762 (766)
Q Consensus 746 ~~~~~~~~~~~~~~~~~ 762 (766)
|.+--+.+...+.+.|+
T Consensus 436 yyd~Vp~DPs~eeMrkV 452 (513)
T KOG2052|consen 436 YYDVVPSDPSFEEMRKV 452 (513)
T ss_pred cccCCCCCCCHHHHhcc
Confidence 86655555555555443
|
|
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=304.62 Aligned_cols=203 Identities=19% Similarity=0.277 Sum_probs=165.1
Q ss_pred hCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcC-CCCcccceeEEEecCC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS-HARLVPLLGHCMEREN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~ 603 (766)
.++|...++||+|+||.||+|+.. .+..||||+++..... .+.|.+|++++++++ |||||+++++|.+ .+
T Consensus 36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~-~~ 114 (400)
T cd05105 36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTK-SG 114 (400)
T ss_pred ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEcc-CC
Confidence 457888899999999999999842 2357999999654332 467999999999996 9999999998865 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCC-------------------------------------------------------
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTE------------------------------------------------------- 628 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~------------------------------------------------------- 628 (766)
..|+|||||++|+|.++|++.....
T Consensus 115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (400)
T cd05105 115 PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEI 194 (400)
T ss_pred ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhh
Confidence 8999999999999999987532100
Q ss_pred ----------------------------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC
Q 004248 629 ----------------------------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (766)
Q Consensus 629 ----------------------------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~ 674 (766)
.....++|.++..++.|+++||+|||+. +|+||||||+|||++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill~ 271 (400)
T cd05105 195 KEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLLA 271 (400)
T ss_pred hhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEEe
Confidence 0113488999999999999999999997 999999999999999
Q ss_pred CCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 675 DKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 675 ~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+++.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||++ |+.||..
T Consensus 272 ~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwSlGvil~ellt~g~~P~~~ 342 (400)
T cd05105 272 QGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNL---------YTTLSDVWSYGILLWEIFSLGGTPYPG 342 (400)
T ss_pred CCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCC---------CCchhhHHHHHHHHHHHHHCCCCCCcc
Confidence 9999999999999765221 11223456799999876543 4789999999999999997 9999854
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=287.03 Aligned_cols=197 Identities=20% Similarity=0.357 Sum_probs=166.3
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+|+..+.||+|+||.||+|.. ++++.||+|.+.......+++.+|++++++++||||+++++++.. ++..++||||++
T Consensus 7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~ 85 (263)
T cd05052 7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEFMT 85 (263)
T ss_pred HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcC-CCCcEEEEEeCC
Confidence 477788999999999999995 568899999987655446789999999999999999999998765 567899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... ..++|..+..++.|++.||+|||+. +++||||||+||++++++.+||+|||+++.....
T Consensus 86 ~~~L~~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~ 157 (263)
T cd05052 86 YGNLLDYLRECNR-----QEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD 157 (263)
T ss_pred CCcHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccc
Confidence 9999999975432 3489999999999999999999987 9999999999999999999999999999765432
Q ss_pred Cc----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 AH----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~~----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.. ....+..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 158 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~t~g~~p~~~~ 209 (263)
T cd05052 158 TYTAHAGAKFPIKWTAPESLAYNK---------FSIKSDVWAFGVLLWEIATYGMSPYPGI 209 (263)
T ss_pred eeeccCCCCCccccCCHHHhccCC---------CCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence 21 112245699999775443 4789999999999999998 89998543
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-33 Score=324.37 Aligned_cols=208 Identities=15% Similarity=0.219 Sum_probs=169.1
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~ 606 (766)
..++|...+.||+|+||.||+|+. .++..||+|.+...... ...|.+|+.++++++|||||++++++... ...+|
T Consensus 11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly 90 (1021)
T PTZ00266 11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY 90 (1021)
T ss_pred ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence 456899999999999999999994 56789999998754332 45789999999999999999999977643 34689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCC----CCeEecCCCCCCeeeCCC------
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT----LPFVHRDVQASSILLDDK------ 676 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~----~~iiHrDlKp~NILl~~~------ 676 (766)
+||||+++|+|.++|..... ....+++..++.|+.||+.||+|||+... .+||||||||+|||++.+
T Consensus 91 IVMEY~~gGSL~~lL~k~~~---~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~ 167 (1021)
T PTZ00266 91 ILMEFCDAGDLSRNIQKCYK---MFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGK 167 (1021)
T ss_pred EEEeCCCCCcHHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccc
Confidence 99999999999999975321 11358999999999999999999998421 369999999999999643
Q ss_pred -----------CcEEeccchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCC
Q 004248 677 -----------FEVRLGSLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN 743 (766)
Q Consensus 677 -----------~~~kl~DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~ 743 (766)
..+||+|||+++..... .....+|+.|+|||.+...... ++.++||||||||+|||+||+
T Consensus 168 i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~-------~s~KSDVWSLG~ILYELLTGk 240 (1021)
T PTZ00266 168 ITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKS-------YDDKSDMWALGCIIYELCSGK 240 (1021)
T ss_pred ccccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCC-------CCchhHHHHHHHHHHHHHHCC
Confidence 34899999999876322 3345689999999987543221 578999999999999999999
Q ss_pred CCCCCC
Q 004248 744 HLNLSS 749 (766)
Q Consensus 744 ~p~~~~ 749 (766)
.||...
T Consensus 241 ~PF~~~ 246 (1021)
T PTZ00266 241 TPFHKA 246 (1021)
T ss_pred CCCCcC
Confidence 999543
|
|
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=286.01 Aligned_cols=196 Identities=21% Similarity=0.307 Sum_probs=166.0
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+|+..+.||+|+||.||+|...++..+|+|.+.......++|.+|++++++++||||+++++++.. .+..|+||||+++
T Consensus 5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e~~~~ 83 (256)
T cd05059 5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK-QRPIFIVTEYMAN 83 (256)
T ss_pred HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcC-CCceEEEEecCCC
Confidence 477789999999999999998777899999987655556789999999999999999999997765 5679999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~ 694 (766)
++|.++++.+.. .++|..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++......
T Consensus 84 ~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~ 154 (256)
T cd05059 84 GCLLNYLRERKG------KLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQ 154 (256)
T ss_pred CCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceeccccc
Confidence 999999975432 489999999999999999999997 89999999999999999999999999987653221
Q ss_pred -ccc---eeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 695 -HQS---RITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 695 -~~~---~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
... .++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 155 ~~~~~~~~~~~~y~~Pe~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 205 (256)
T cd05059 155 YTSSQGTKFPVKWAPPEVFDYSR---------FSSKSDVWSFGVLMWEVFSEGKMPYERF 205 (256)
T ss_pred ccccCCCCCCccccCHHHhccCC---------CCchhhHHHHHHHHHHHhccCCCCCCCC
Confidence 111 1234699999876544 4679999999999999999 89998543
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=301.97 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=165.4
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-----
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE----- 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----- 602 (766)
..++|+..+.||+|+||.||+|.. .+++.||||++...... .+.+.+|+.+++.++||||+++++++....
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 94 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF 94 (355)
T ss_pred hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence 456899999999999999999984 56899999999653322 457889999999999999999999775321
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...|+||||+++ +|.+.+.. .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+
T Consensus 95 ~~~~lv~e~~~~-~l~~~~~~---------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~ 161 (355)
T cd07874 95 QDVYLVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKIL 161 (355)
T ss_pred ceeEEEhhhhcc-cHHHHHhh---------cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEe
Confidence 247999999975 77776642 278999999999999999999998 99999999999999999999999
Q ss_pred cchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 683 SLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 683 DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|||+++..+.. .....+|+.|+|||...+.. ++.++|||||||++|||++|+.||...+
T Consensus 162 Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~pf~~~~ 222 (355)
T cd07874 162 DFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGEMVRHKILFPGRD 222 (355)
T ss_pred eCcccccCCCccccCCccccCCccCHHHHcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999876432 23457899999999875443 4789999999999999999999996443
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-32 Score=290.26 Aligned_cols=196 Identities=20% Similarity=0.263 Sum_probs=161.8
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhc---CCCCcccceeEEEec----CC
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKV---SHARLVPLLGHCMER----EN 603 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l---~H~niv~l~~~~~~~----~~ 603 (766)
+|+..+.||+|+||.||+|.. .+|+.||+|.++..... ...+.+|+++++++ +||||+++++++... ..
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~ 80 (288)
T cd07863 1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET 80 (288)
T ss_pred CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence 477889999999999999984 57899999998753322 34567788877766 699999999977532 23
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++||||++ ++|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|
T Consensus 81 ~~~lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~d 151 (288)
T cd07863 81 KVTLVFEHVD-QDLRTYLDKVPP-----PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLAD 151 (288)
T ss_pred eEEEEEcccc-cCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECc
Confidence 5799999998 589998875432 2489999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++..... .....+|..|+|||...... ++.++||||+||++|||++|++||..
T Consensus 152 fg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwslG~~l~~l~~g~~~f~~ 209 (288)
T cd07863 152 FGLARIYSCQMALTPVVVTLWYRAPEVLLQST---------YATPVDMWSVGCIFAEMFRRKPLFCG 209 (288)
T ss_pred cCccccccCcccCCCccccccccCchHhhCCC---------CCCcchhhhHHHHHHHHHhCCcCcCC
Confidence 9999865322 23456788999999875443 47899999999999999999998854
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=291.83 Aligned_cols=216 Identities=16% Similarity=0.150 Sum_probs=175.6
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEe-
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCME- 600 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~- 600 (766)
+.++++..+.++|+..+.||+|+||.||+|+. .+++.+|+|.++......+++.+|+++++++ +||||+++++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 87 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK 87 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence 44566667889999999999999999999985 5688999998865443456788999999999 69999999998753
Q ss_pred ---cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 601 ---RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 601 ---~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
.++..++||||+++|+|.++++.... ....+++..+..++.|+++||.|||+. +|+||||||+||++++++
T Consensus 88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~ 161 (286)
T cd06638 88 DVKNGDQLWLVLELCNGGSVTDLVKGFLK---RGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEG 161 (286)
T ss_pred ccCCCCeEEEEEeecCCCCHHHHHHHhhc---cCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCC
Confidence 23468999999999999998864321 113489999999999999999999997 999999999999999999
Q ss_pred cEEeccchhhhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+||+|||+++.... ......++..|+|||.+........ .++.++||||+||++|||+||+.||...
T Consensus 162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~----~~~~~~Dv~slGvi~~el~~g~~p~~~~ 232 (286)
T cd06638 162 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDS----TYDARCDVWSLGITAIELGDGDPPLADL 232 (286)
T ss_pred CEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccc----cccchhhhhhHHHHHHHHhcCCCCCCCC
Confidence 999999999876532 1233467889999998753321111 1578999999999999999999998543
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=288.15 Aligned_cols=191 Identities=18% Similarity=0.238 Sum_probs=164.4
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..++||+|+||.||+|+ ..+++.||+|.+...... .++|.+|++++++++||||+++++++.. ++..++|||
T Consensus 1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 79 (279)
T cd06619 1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV-ENRISICTE 79 (279)
T ss_pred CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEE-CCEEEEEEe
Confidence 367888999999999999998 467899999998654322 4679999999999999999999998876 568899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|..+. .+++.....++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 80 ~~~~~~l~~~~-----------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~ 145 (279)
T cd06619 80 FMDGGSLDVYR-----------KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQL 145 (279)
T ss_pred cCCCCChHHhh-----------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceec
Confidence 99999986542 278888999999999999999997 9999999999999999999999999999765
Q ss_pred CC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. ......++..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 146 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~~l~~l~~g~~pf~~ 195 (279)
T cd06619 146 VNSIAKTYVGTNAYMAPERISGEQ---------YGIHSDVWSLGISFMELALGRFPYPQ 195 (279)
T ss_pred ccccccCCCCChhhcCceeecCCC---------CCCcchHHHHHHHHHHHHhCCCCchh
Confidence 33 234456888999999876543 46899999999999999999999954
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-32 Score=302.26 Aligned_cols=196 Identities=17% Similarity=0.185 Sum_probs=164.8
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEec-----C
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMER-----E 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~ 602 (766)
..++|...+.||+|+||.||+|.. .+++.||||++..... ..+++.+|+.+++.++||||+++++++... .
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~ 101 (364)
T cd07875 22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 101 (364)
T ss_pred hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence 356899999999999999999984 5688999999965322 245788999999999999999999876432 1
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...|+||||+++ +|.+.+.. .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 102 ~~~~lv~e~~~~-~l~~~~~~---------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~ 168 (364)
T cd07875 102 QDVYIVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKIL 168 (364)
T ss_pred CeEEEEEeCCCC-CHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEE
Confidence 357999999975 78777742 278899999999999999999997 99999999999999999999999
Q ss_pred cchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++..+.. .....+|..|+|||.+.+.. ++.++|||||||++|||+||+.||...
T Consensus 169 DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwSlG~il~ell~g~~pf~~~ 228 (364)
T cd07875 169 DFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGEMIKGGVLFPGT 228 (364)
T ss_pred eCCCccccCCCCcccCCcccCCcCCHHHHhCCC---------CCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence 99999876432 23456889999999876543 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-32 Score=286.42 Aligned_cols=197 Identities=22% Similarity=0.305 Sum_probs=166.9
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|...+.||+|+||.||+|...++..||||.+.......++|.+|+.++++++||||+++++++.+ .+..++||||++
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~ 82 (256)
T cd05113 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK-QRPIYIVTEYMS 82 (256)
T ss_pred HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEcc-CCCcEEEEEcCC
Confidence 3577788999999999999998777789999987655556789999999999999999999998765 457899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... .++|.+++.++.||+.||+|||+. +|+||||||+||++++++.+||+|||.++.....
T Consensus 83 ~~~l~~~i~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~ 153 (256)
T cd05113 83 NGCLLNYLREHGK------RFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDD 153 (256)
T ss_pred CCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCC
Confidence 9999999975432 489999999999999999999987 9999999999999999999999999998765322
Q ss_pred C-c---cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 A-H---QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~-~---~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
. . ...++..|++||...... ++.++|||||||++|||+| |+.||...
T Consensus 154 ~~~~~~~~~~~~~y~~pe~~~~~~---------~~~~~Di~slG~~l~~l~~~g~~p~~~~ 205 (256)
T cd05113 154 EYTSSVGSKFPVRWSPPEVLLYSK---------FSSKSDVWAFGVLMWEVYSLGKMPYERF 205 (256)
T ss_pred ceeecCCCccChhhCCHHHHhcCc---------ccchhHHHHHHHHHHHHhcCCCCCcCcC
Confidence 1 1 122345799999875443 4679999999999999999 99998543
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=293.82 Aligned_cols=197 Identities=14% Similarity=0.208 Sum_probs=159.0
Q ss_pred cceeecCCcceEEEEEEc---CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEEEEeeCCC
Q 004248 539 ANLIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLVYKYMPN 614 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~lV~Ey~~~ 614 (766)
.++||+|+||+||+|+.. +++.||+|.+.... ....+.+|++++++++|||||++++++... +...|+||||++
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~- 83 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE- 83 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC-CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-
Confidence 468999999999999853 56899999986443 245678999999999999999999977542 346899999997
Q ss_pred CChhhhhhccCCC--CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee----CCCCcEEeccchhhh
Q 004248 615 GDLSSSLYRKTNT--EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL----DDKFEVRLGSLSEVC 688 (766)
Q Consensus 615 GsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DFG~a~ 688 (766)
++|.+++...... ......+++.....++.|++.||+|||+. +|+||||||+|||+ +.++.+||+|||+++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~ 160 (317)
T cd07868 84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFAR 160 (317)
T ss_pred CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCcee
Confidence 5898887543211 11123589999999999999999999998 99999999999999 456889999999998
Q ss_pred hcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... .....+|+.|+|||.+.+... ++.++||||+||++|||+||++||..
T Consensus 161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~~f~~ 218 (317)
T cd07868 161 LFNSPLKPLADLDPVVVTFWYRAPELLLGARH--------YTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred ccCCCCccccccCCccccccccCCHHHcCCCC--------cCchhhHHHHHHHHHHHHhCCCCccC
Confidence 65322 234567899999998765332 47899999999999999999999953
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=283.48 Aligned_cols=198 Identities=21% Similarity=0.274 Sum_probs=168.8
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|++|.||+|.. .+++.||+|.+..... ..+++.+|++++++++||||+++++++.+ ++..|+|||
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 79 (256)
T cd08529 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLD-KGKLNIVME 79 (256)
T ss_pred CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeecc-CCEEEEEEE
Confidence 477789999999999999995 5789999999875432 25679999999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.++++.... ..+++.++..++.|++.||.|||+. +|+||||||+||++++++.+||+|||+++..
T Consensus 80 ~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~ 151 (256)
T cd08529 80 YAENGDLHKLLKMQRG-----RPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLL 151 (256)
T ss_pred eCCCCcHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceec
Confidence 9999999999976422 3589999999999999999999987 9999999999999999999999999998865
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....++..|+|||...... ++.++|||||||+++||+||+.||....
T Consensus 152 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~~ 205 (256)
T cd08529 152 SDNTNFANTIVGTPYYLSPELCEDKP---------YNEKSDVWALGVVLYECCTGKHPFDANN 205 (256)
T ss_pred cCccchhhccccCccccCHHHhcCCC---------CCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence 322 12335678899999876543 4689999999999999999999996443
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=285.85 Aligned_cols=196 Identities=20% Similarity=0.305 Sum_probs=165.6
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|...+.||+|+||.||+|+..++..||+|+++......++|.+|++++++++||||+++++++. ++..++||||++
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~--~~~~~lv~e~~~ 83 (262)
T cd05071 6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS--EEPIYIVTEYMS 83 (262)
T ss_pred HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC--CCCcEEEEEcCC
Confidence 458888999999999999999777778999999765555678999999999999999999998663 356899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+... ..++|.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.++.....
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~ 155 (262)
T cd05071 84 KGSLLDFLKGEMG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN 155 (262)
T ss_pred CCcHHHHHhhccc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeecccc
Confidence 9999999975322 2479999999999999999999997 9999999999999999999999999999765322
Q ss_pred Cc----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 AH----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~~----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.. ...++..|++||...... ++.++|||||||++|||+| |+.||..
T Consensus 156 ~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~DvwslG~~l~ellt~g~~p~~~ 206 (262)
T cd05071 156 EYTARQGAKFPIKWTAPEAALYGR---------FTIKSDVWSFGILLTELTTKGRVPYPG 206 (262)
T ss_pred ccccccCCcccceecCHhHhccCC---------CCchhhHHHHHHHHHHHHcCCCCCCCC
Confidence 11 223456799999765443 5789999999999999999 8888853
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=291.94 Aligned_cols=197 Identities=19% Similarity=0.258 Sum_probs=165.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...+.||+|+||.||+|+. .+++.||+|.++..... ...+.+|++++++++||||+++++++.. ++..++|||
T Consensus 6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~-~~~~~lv~e 84 (301)
T cd07873 6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-EKSLTLVFE 84 (301)
T ss_pred cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEec-CCeEEEEEe
Confidence 5688899999999999999985 46889999998654322 4568899999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ ++|.+++.... ..+++.....++.|+++||+|||+. +|+||||||+||++++++.+||+|||+++..
T Consensus 85 ~~~-~~l~~~l~~~~------~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~ 154 (301)
T cd07873 85 YLD-KDLKQYLDDCG------NSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAK 154 (301)
T ss_pred ccc-cCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhcc
Confidence 998 59999886543 2488999999999999999999997 9999999999999999999999999999764
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....++..|+|||....... ++.++|||||||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~~~~~y~~PE~~~~~~~--------~~~~~Dv~slG~~l~el~tg~~~f~~~ 208 (301)
T cd07873 155 SIPTKTYSNEVVTLWYRPPDILLGSTD--------YSTQIDMWGVGCIFYEMSTGRPLFPGS 208 (301)
T ss_pred CCCCCcccccceeecccCcHHHhCCCC--------CccHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 321 223456889999998654321 468999999999999999999999543
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-33 Score=320.85 Aligned_cols=208 Identities=19% Similarity=0.184 Sum_probs=174.8
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
.++.-..+||++.++||+|+||.|..++ ..+++.+|+|++.+..+ ...-|..|-.+|..-+.+.||.++..| ++
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAF-QD 146 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAF-QD 146 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHh-cC
Confidence 3555667889999999999999999998 56799999999976433 234588899999999999999998644 55
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
+.++|+|||||+||||..++.+.. .+++.-...|+.+|+.||.-+|+. ++|||||||+|||||..|++|+
T Consensus 147 ~~~LYlVMdY~pGGDlltLlSk~~-------~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikL 216 (1317)
T KOG0612|consen 147 ERYLYLVMDYMPGGDLLTLLSKFD-------RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKL 216 (1317)
T ss_pred ccceEEEEecccCchHHHHHhhcC-------CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEee
Confidence 789999999999999999997654 378888889999999999999997 9999999999999999999999
Q ss_pred ccchhhhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||.+-..+.+ ....+|||-|.+||++.....|.. .|++.+|+||+||++|||+.|.-||...
T Consensus 217 ADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g----~yG~ecDwWSlGV~~YEMlyG~TPFYad 284 (1317)
T KOG0612|consen 217 ADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKG----EYGRECDWWSLGVFMYEMLYGETPFYAD 284 (1317)
T ss_pred ccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCcc----ccCCccchhhhHHHHHHHHcCCCcchHH
Confidence 999988665433 345689999999997654322211 2789999999999999999999999543
|
|
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=287.70 Aligned_cols=196 Identities=22% Similarity=0.270 Sum_probs=161.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc----EEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI----PVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||+||+|+. .+++ .||+|.+...... .+++..|+.++++++|||||++++++. +...+
T Consensus 7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~--~~~~~ 84 (279)
T cd05111 7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP--GASLQ 84 (279)
T ss_pred hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC--CCccE
Confidence 4678889999999999999985 4454 5788887543322 356888999999999999999999764 34678
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|+||+++|+|.+++..... .++|..+..++.||+.||+|||+. +++||||||+||++++++.+||+|||+
T Consensus 85 ~i~e~~~~gsL~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~ 155 (279)
T cd05111 85 LVTQLSPLGSLLDHVRQHRD------SLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGV 155 (279)
T ss_pred EEEEeCCCCcHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCcc
Confidence 99999999999999975432 489999999999999999999997 899999999999999999999999999
Q ss_pred hhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 687 VCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
++..... .....++..|++||....+. ++.++|||||||++|||+| |+.||...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~---------~~~~~Dv~slG~il~el~t~g~~p~~~~ 215 (279)
T cd05111 156 ADLLYPDDKKYFYSEHKTPIKWMALESILFGR---------YTHQSDVWSYGVTVWEMMSYGAEPYAGM 215 (279)
T ss_pred ceeccCCCcccccCCCCCcccccCHHHhccCC---------cCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 9765221 12234566799999876544 4789999999999999998 99998543
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=284.10 Aligned_cols=197 Identities=19% Similarity=0.337 Sum_probs=168.1
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..++||+|+||.||+|...+++.||+|.+.......++|.+|+.++++++||||+++++++. .+..++||||++
T Consensus 6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--~~~~~~v~e~~~ 83 (260)
T cd05067 6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT--QEPIYIITEYME 83 (260)
T ss_pred HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc--cCCcEEEEEcCC
Confidence 468888999999999999999888999999999876666778999999999999999999998653 357899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC-
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG- 692 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~- 692 (766)
+|+|.+++....+ ..+++.++..++.|++.||+|||+. +++||||||+||++++++.++|+|||+++....
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~ 155 (260)
T cd05067 84 NGSLVDFLKTPEG-----IKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDN 155 (260)
T ss_pred CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCC
Confidence 9999999875432 3589999999999999999999987 999999999999999999999999999876532
Q ss_pred CCc---cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 693 DAH---QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 693 ~~~---~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
... ...++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 156 ~~~~~~~~~~~~~y~~pe~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~~~ 207 (260)
T cd05067 156 EYTAREGAKFPIKWTAPEAINYGT---------FTIKSDVWSFGILLTEIVTYGRIPYPGM 207 (260)
T ss_pred CcccccCCcccccccCHHHhccCC---------cCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence 111 123356799999875443 4679999999999999999 99999543
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=290.39 Aligned_cols=196 Identities=18% Similarity=0.262 Sum_probs=168.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||.||+|+. .+++.||+|.+...... .+.+.+|++++++++||||+++++++.. +...|+||||
T Consensus 20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~-~~~~~lv~e~ 98 (296)
T cd06654 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-GDELWVVMEY 98 (296)
T ss_pred cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEe-CCEEEEeecc
Confidence 4688889999999999999984 57899999999765443 5678999999999999999999997765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++.+. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 99 ~~~~~L~~~~~~~--------~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~ 167 (296)
T cd06654 99 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167 (296)
T ss_pred cCCCCHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhcc
Confidence 9999999998642 378999999999999999999997 99999999999999999999999999987653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. .....++..|+|||...... .+.++|||||||++|||+||+.||....
T Consensus 168 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~s~Gvil~~l~~g~~pf~~~~ 220 (296)
T cd06654 168 PEQSKRSTMVGTPYWMAPEVVTRKA---------YGPKVDIWSLGIMAIEMIEGEPPYLNEN 220 (296)
T ss_pred ccccccCcccCCccccCHHHHcCCC---------CCccchHHHHHHHHHHHHhCCCCCCCCC
Confidence 22 22346788999999876433 4689999999999999999999996543
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=286.80 Aligned_cols=199 Identities=19% Similarity=0.238 Sum_probs=167.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|...+.||+|+||.||+|+. .+++.||+|.++..... .+.+.+|+.+++.++||||+++++++.. ++..|+||||
T Consensus 9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~-~~~~~lv~e~ 87 (267)
T cd06645 9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLR-RDKLWICMEF 87 (267)
T ss_pred HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEe-CCEEEEEEec
Confidence 3577788999999999999984 56899999998755433 4568899999999999999999997765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++...+ .+++.+...++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 88 ~~~~~L~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~ 157 (267)
T cd06645 88 CGGGSLQDIYHVTG-------PLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQIT 157 (267)
T ss_pred cCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEcc
Confidence 99999999987543 389999999999999999999997 99999999999999999999999999987543
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|+|||.......+. ++.++||||+||++|||++|+.||...
T Consensus 158 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~------~~~~~DvwSlG~il~~l~~~~~p~~~~ 212 (267)
T cd06645 158 ATIAKRKSFIGTPYWMAPEVAAVERKGG------YNQLCDIWAVGITAIELAELQPPMFDL 212 (267)
T ss_pred CcccccccccCcccccChhhhccccCCC------CCchhhhHHHHHHHHHHhcCCCCcccc
Confidence 22 22346788999999864222121 578999999999999999999998543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-32 Score=288.22 Aligned_cols=197 Identities=19% Similarity=0.209 Sum_probs=170.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||++.. .+++.||+|.+..... ..+.+.+|++++++++||||+++++++.. ++..|+|
T Consensus 1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v 79 (290)
T cd05580 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQD-DSNLYLV 79 (290)
T ss_pred CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEc-CCeEEEE
Confidence 4688889999999999999995 5689999999865332 24578999999999999999999997765 5679999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++
T Consensus 80 ~e~~~~~~L~~~~~~~~-------~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~ 149 (290)
T cd05580 80 MEYVPGGELFSHLRKSG-------RFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAK 149 (290)
T ss_pred EecCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCcc
Confidence 99999999999997653 389999999999999999999997 99999999999999999999999999998
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
..........++..|+|||...... .+.++|||||||++|||+||+.||...+
T Consensus 150 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~~ 202 (290)
T cd05580 150 RVKGRTYTLCGTPEYLAPEIILSKG---------YGKAVDWWALGILIYEMLAGYPPFFDDN 202 (290)
T ss_pred ccCCCCCCCCCCccccChhhhcCCC---------CCccccHHHHHHHHHHHHhCCCCCCCCC
Confidence 7755555556788999999875443 4689999999999999999999996544
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-32 Score=282.95 Aligned_cols=196 Identities=18% Similarity=0.267 Sum_probs=167.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|++|.||+|.. .++++||+|.+..... ..+.+.+|++++++++||||+++++++.. ++..+
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~ 80 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRD-DETLS 80 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEcc-CCeEE
Confidence 4688899999999999999984 5789999999864322 13468899999999999999999997765 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|+||+++++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+
T Consensus 81 ~v~e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~ 150 (263)
T cd06625 81 IFMEYMPGGSVKDQLKAYG-------ALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGA 150 (263)
T ss_pred EEEEECCCCcHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccc
Confidence 9999999999999987543 388999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++...... ....++..|+|||...... ++.++||||+||++|||++|+.||...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~g~~p~~~~ 210 (263)
T cd06625 151 SKRLQTICSSGTGMKSVTGTPYWMSPEVISGEG---------YGRKADVWSVGCTVVEMLTEKPPWAEF 210 (263)
T ss_pred ceeccccccccccccCCCcCccccCcceeccCC---------CCchhhhHHHHHHHHHHHhCCCCcccc
Confidence 87543211 2345678899999886544 468999999999999999999999644
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=287.31 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=165.1
Q ss_pred CCCCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||.||+|.. .++..||+|.+...... .++|.+|++++++++||||+++++++.. ++..|
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~ 83 (283)
T cd05090 5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQ-EQPVC 83 (283)
T ss_pred hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEec-CCceE
Confidence 3577789999999999999983 34679999999643322 3578999999999999999999997765 56799
Q ss_pred EEEeeCCCCChhhhhhccCCC----------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC
Q 004248 607 LVYKYMPNGDLSSSLYRKTNT----------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~----------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~ 676 (766)
+||||+++|+|.+++..+... ......+++.+...++.|++.||+|||+. +|+||||||+||+++++
T Consensus 84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~ 160 (283)
T cd05090 84 MLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQ 160 (283)
T ss_pred EEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCC
Confidence 999999999999998643210 01123589999999999999999999997 99999999999999999
Q ss_pred CcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 677 FEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~~~g~~p~~~~ 230 (283)
T cd05090 161 LHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGK---------FSSDSDIWSFGVVLWEIFSFGLQPYYGF 230 (283)
T ss_pred CcEEeccccccccccCCcceecccCCCccceecChHHhccCC---------CCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999765221 12233456799999875443 4789999999999999999 99998543
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=288.26 Aligned_cols=203 Identities=24% Similarity=0.363 Sum_probs=166.2
Q ss_pred CCCCccceeecCCcceEEEEEEcC------CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|...+ ...||+|.+...... .++|.+|++++++++||||+++++++.. .+..
T Consensus 5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-~~~~ 83 (283)
T cd05048 5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTK-EQPT 83 (283)
T ss_pred HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcC-CCce
Confidence 357888999999999999998532 268999998654322 4579999999999999999999997765 5678
Q ss_pred EEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~ 676 (766)
+++|||+++|+|.+++....... .....+++.+...++.|++.||+|||+. +|+||||||+||+++++
T Consensus 84 ~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~ 160 (283)
T cd05048 84 CMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEG 160 (283)
T ss_pred EEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCC
Confidence 99999999999999997542210 0114589999999999999999999998 99999999999999999
Q ss_pred CcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 677 FEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 161 ~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~sDv~slG~il~el~~~g~~p~~~~ 230 (283)
T cd05048 161 LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGK---------FTTESDIWSFGVVLWEIFSYGLQPYYGF 230 (283)
T ss_pred CcEEECCCcceeeccccccccccCCCcccccccCHHHhccCc---------CchhhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999998754221 12234567899999875443 4789999999999999998 99999643
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=286.70 Aligned_cols=203 Identities=20% Similarity=0.302 Sum_probs=167.6
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|...+.||+|+||.||+|... +++.||||.++..... .++|.+|++++++++||||+++++++.. .+..
T Consensus 5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~ 83 (280)
T cd05049 5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTE-GDPP 83 (280)
T ss_pred HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEec-CCCe
Confidence 45777899999999999999853 3578999998654333 4689999999999999999999998876 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCC-------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNT-------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~-------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
++||||+++|+|.++++..+.. ......+++.++..++.|++.|++|||+. +++||||||+||+++.++.
T Consensus 84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~ 160 (280)
T cd05049 84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLV 160 (280)
T ss_pred EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCe
Confidence 9999999999999999764320 11224589999999999999999999997 9999999999999999999
Q ss_pred EEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 679 VRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+||+|||+++..... .....++..|+|||...... +++++|||||||++|||++ |+.||...
T Consensus 161 ~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~e~~~~g~~p~~~~ 228 (280)
T cd05049 161 VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRK---------FTTESDVWSFGVVLWEIFTYGKQPWYGL 228 (280)
T ss_pred EEECCcccceecccCcceecCCCCcccceecChhhhccCC---------cchhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999998754211 12223456799999876544 4789999999999999999 99998543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=287.99 Aligned_cols=214 Identities=18% Similarity=0.231 Sum_probs=176.4
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER 601 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 601 (766)
.++.++..+.+.|+..+.||+|+||.||+|.. .+++.||+|.+........++.+|+.+++++ +||||+++++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~ 85 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKK 85 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence 45566666778899999999999999999995 6789999999876554556789999999999 699999999987532
Q ss_pred -----CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC
Q 004248 602 -----ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676 (766)
Q Consensus 602 -----~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~ 676 (766)
.+..|+||||+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++++
T Consensus 86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~ 157 (282)
T cd06636 86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKG-----NALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTEN 157 (282)
T ss_pred cccCCCCEEEEEEEeCCCCcHHHHHHHccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCC
Confidence 3468999999999999999975432 3478888999999999999999997 99999999999999999
Q ss_pred CcEEeccchhhhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 677 FEVRLGSLSEVCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.+||+|||+++.... ......++..|+|||.+......... ++.++|||||||++|||+||+.||...
T Consensus 158 ~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~----~~~~~DvwslG~~l~el~~g~~p~~~~ 229 (282)
T cd06636 158 AEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDAT----YDYRSDIWSLGITAIEMAEGAPPLCDM 229 (282)
T ss_pred CCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcC----CCcccchhHHHHHHHHHHhCCCCcccc
Confidence 9999999999876532 12334578899999987532211111 578999999999999999999999543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=283.50 Aligned_cols=196 Identities=19% Similarity=0.337 Sum_probs=166.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|..+++..||+|.+.......++|.+|+.++++++|||++++++++. ++..++||||++
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~--~~~~~lv~e~~~ 83 (260)
T cd05070 6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS--EEPIYIVTEYMS 83 (260)
T ss_pred HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC--CCCcEEEEEecC
Confidence 457888999999999999999888889999999766555678999999999999999999998764 356899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++++... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~ 155 (260)
T cd05070 84 KGSLLDFLKDGEG-----RALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDN 155 (260)
T ss_pred CCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCc
Confidence 9999999975432 3489999999999999999999997 8999999999999999999999999999765322
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. ....++..|+|||...... ++.++|||||||++|||++ |+.||..
T Consensus 156 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~l~~~g~~p~~~ 206 (260)
T cd05070 156 EYTARQGAKFPIKWTAPEAALYGR---------FTIKSDVWSFGILLTELVTKGRVPYPG 206 (260)
T ss_pred ccccccCCCCCccccChHHHhcCC---------CcchhhhHHHHHHHHHHHhcCCCCCCC
Confidence 1 1122345799999765433 5789999999999999999 8888854
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-32 Score=286.14 Aligned_cols=195 Identities=19% Similarity=0.290 Sum_probs=162.7
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCc----EEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGI----PVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~----~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||.||+|+ ..+|. .||+|.+...... .+++.+|+.+++.++||||+++++++.. ...+
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--~~~~ 84 (279)
T cd05109 7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT--STVQ 84 (279)
T ss_pred hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC--CCcE
Confidence 468889999999999999998 44554 5899998654332 5678999999999999999999998864 4578
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+++||+++|+|.++++.+.. .+++.+++.++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+
T Consensus 85 l~~~~~~~g~l~~~l~~~~~------~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~ 155 (279)
T cd05109 85 LVTQLMPYGCLLDYVRENKD------RIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGL 155 (279)
T ss_pred EEEEcCCCCCHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCc
Confidence 99999999999999975432 489999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCCc-----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 687 VCAQGGDAH-----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 687 a~~~~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
++....... ...++..|++||...... ++.++|||||||++|||+| |+.||..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~~l~el~t~g~~p~~~ 214 (279)
T cd05109 156 ARLLDIDETEYHADGGKVPIKWMALESILHRR---------FTHQSDVWSYGVTVWELMTFGAKPYDG 214 (279)
T ss_pred eeecccccceeecCCCccchhhCCHHHhccCC---------CCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence 986532211 122356799999875443 4789999999999999998 8999854
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=285.52 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=165.8
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
|+..+.||+|+||.||+|.. .++..+|+|.+...... .+.+.+|++++++++||||+++++++.. ++..|+||||++
T Consensus 7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-~~~~~~v~e~~~ 85 (282)
T cd06643 7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-ENNLWILIEFCA 85 (282)
T ss_pred HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEee-CCEEEEEEEecC
Confidence 45568899999999999995 45888999998654432 5678999999999999999999998876 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+.. ..++|..+..++.|++.||+|||+. +|+||||||+||+++.++++||+|||+++.....
T Consensus 86 ~~~l~~~~~~~~------~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~ 156 (282)
T cd06643 86 GGAVDAVMLELE------RPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT 156 (282)
T ss_pred CCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEcccccccccccc
Confidence 999999886532 2489999999999999999999997 9999999999999999999999999998754221
Q ss_pred ---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 ---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....++..|+|||........... ++.++|||||||++|||++|+.||...
T Consensus 157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~Dv~slGvil~el~~g~~p~~~~ 211 (282)
T cd06643 157 IQRRDSFIGTPYWMAPEVVMCETSKDRP----YDYKADVWSLGITLIEMAQIEPPHHEL 211 (282)
T ss_pred ccccccccccccccCHhhccccCCCCCC----CCccchhhhHHHHHHHHccCCCCcccc
Confidence 2234578899999987532221111 578999999999999999999998543
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-32 Score=286.87 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=165.6
Q ss_pred HhCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
.+++|+..+.||+|+||.||+|... ++..||||++..... ...+|.+|+.++++++||||+++++++.+ ++
T Consensus 4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-~~ 82 (277)
T cd05062 4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ-GQ 82 (277)
T ss_pred cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-CC
Confidence 4567999999999999999999742 356899999864332 24578999999999999999999997765 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCC---CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTE---DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
..++||||+++|+|.+++++..... .....++|.++..++.|++.||+|||+. +++||||||+||++++++.+|
T Consensus 83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~ 159 (277)
T cd05062 83 PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK 159 (277)
T ss_pred CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEE
Confidence 8999999999999999997533211 1123478999999999999999999987 999999999999999999999
Q ss_pred eccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 681 LGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 681 l~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
|+|||+++...... ....++..|+|||.+.... ++.++|||||||++|||+| |+.||..
T Consensus 160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~~~~p~~~ 224 (277)
T cd05062 160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV---------FTTYSDVWSFGVVLWEIATLAEQPYQG 224 (277)
T ss_pred ECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCC---------cCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence 99999987553221 1123456799999876543 4789999999999999999 6888853
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=283.08 Aligned_cols=200 Identities=19% Similarity=0.259 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||.||+|+ ..+++.||||.+..... ....+.+|++++++++||||+++++++.. .+..++|
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v 80 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIE-DNELNIV 80 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEE-CCeEEEE
Confidence 578889999999999999999 45789999998864322 14568999999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
+||+++|+|.+++..... ....+++.+...++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.
T Consensus 81 ~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~ 154 (267)
T cd08228 81 LELADAGDLSQMIKYFKK---QKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR 154 (267)
T ss_pred EEecCCCcHHHHHHHhhh---ccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccce
Confidence 999999999998864221 113488999999999999999999997 99999999999999999999999999987
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....++..|+|||...... .+.++|||||||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~---------~~~~~Di~slG~~l~el~~g~~p~~~~ 209 (267)
T cd08228 155 FFSSKTTAAHSLVGTPYYMSPERIHENG---------YNFKSDIWSLGCLLYEMAALQSPFYGD 209 (267)
T ss_pred eccchhHHHhcCCCCccccChhhhccCC---------CCchhhHHHHHHHHHHHhcCCCCCccc
Confidence 65322 12335678899999875433 467899999999999999999998644
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=281.66 Aligned_cols=197 Identities=19% Similarity=0.306 Sum_probs=165.2
Q ss_pred CCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|... +...||||.++..... .++|.+|+.++++++||||+++++++.. .+..++
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~i 82 (266)
T cd05033 4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTK-SRPVMI 82 (266)
T ss_pred HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEec-CCceEE
Confidence 56888999999999999999863 2468999998654332 4579999999999999999999997765 567999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++..... .++|.++.+++.|++.|++|||+. +|+||||||+||++++++.+||+|||++
T Consensus 83 v~e~~~~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~ 153 (266)
T cd05033 83 ITEYMENGSLDKFLRENDG------KFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLS 153 (266)
T ss_pred EEEcCCCCCHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchh
Confidence 9999999999999975432 489999999999999999999997 9999999999999999999999999999
Q ss_pred hhcCCCCc-----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGDAH-----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+....... ...++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~---------~~~~~Dv~slG~~l~~l~~~g~~p~~~~ 212 (266)
T cd05033 154 RRLEDSEATYTTKGGKIPIRWTAPEAIAYRK---------FTSASDVWSFGIVMWEVMSYGERPYWDM 212 (266)
T ss_pred hcccccccceeccCCCCCccccChhhhccCC---------CccccchHHHHHHHHHHHccCCCCCCCC
Confidence 87642111 122345799999876443 4789999999999999998 99998543
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-32 Score=285.07 Aligned_cols=202 Identities=20% Similarity=0.271 Sum_probs=157.9
Q ss_pred ceeecCCcceEEEEEEcC---CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGILEG---GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~---g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+.||+|+||+||+|...+ ...+|+|.+...... ...|.+|+++++.++||||+++++++.. ....++||||+++
T Consensus 1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~-~~~~~lv~e~~~~ 79 (269)
T cd05042 1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIE-SIPYLLVLEFCPL 79 (269)
T ss_pred CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECC-CCceEEEEEeCCC
Confidence 368999999999997433 457889987543322 4578999999999999999999998765 5679999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD- 693 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~- 693 (766)
|+|.+++...... .....++.....++.|++.||+|||+. +|+||||||+||++++++++||+|||+++.....
T Consensus 80 g~L~~~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~ 154 (269)
T cd05042 80 GDLKNYLRSNRGM--VAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPED 154 (269)
T ss_pred CcHHHHHHhcccc--ccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccch
Confidence 9999999765421 112357888899999999999999997 9999999999999999999999999998654211
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....++..|+|||.......+. +...++.++|||||||++|||++ |+.||...
T Consensus 155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~--~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~ 213 (269)
T cd05042 155 YYITKDCHAVPLRWLAPELVEIRGQDL--LPKDQTKKSNIWSLGVTMWELFTAADQPYPDL 213 (269)
T ss_pred heeccCCCCCcccccCHHHHhhccccc--cccccchhhHHHHHHHHHHHHHhCCCCCCCcC
Confidence 11223456799999764322110 11125789999999999999999 78887543
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-32 Score=286.23 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=167.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+.|+..++||+|+||.||+|+. .+++.||+|.+...... .+++.+|++++++++||||+++++.+.. ++..++||||
T Consensus 12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~ 90 (292)
T cd06644 12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYW-DGKLWIMIEF 90 (292)
T ss_pred hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe-CCeEEEEEec
Confidence 4577889999999999999995 45899999998754433 5678999999999999999999997765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|..++.+... .+++..+..++.|++.|++|||+. +|+||||||+||+++.++++||+|||++....
T Consensus 91 ~~~~~l~~~~~~~~~------~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~ 161 (292)
T cd06644 91 CPGGAVDAIMLELDR------GLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNV 161 (292)
T ss_pred CCCCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceecc
Confidence 999999988765332 489999999999999999999997 99999999999999999999999999987542
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. .....++..|+|||.+......... ++.++|||||||++|||+||+.||..
T Consensus 162 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~Dv~slG~il~el~~g~~p~~~ 217 (292)
T cd06644 162 KTLQRRDSFIGTPYWMAPEVVMCETMKDTP----YDYKADIWSLGITLIEMAQIEPPHHE 217 (292)
T ss_pred ccccccceecCCccccCceeeccccccCCC----CCchhhhHhHHHHHHHHhcCCCCCcc
Confidence 21 2234567889999987543221111 57899999999999999999999854
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-32 Score=301.80 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=163.3
Q ss_pred hCCCCccceeecCCcceEEEEEEc---CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
..+|...+.||+|+||.||+|... .++.||||.+... +.+.+|++++++++|||||++++++.. ++..++||
T Consensus 91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----~~~~~E~~il~~l~h~~iv~~~~~~~~-~~~~~lv~ 165 (392)
T PHA03207 91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----KTPGREIDILKTISHRAIINLIHAYRW-KSTVCMVM 165 (392)
T ss_pred cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc----ccHHHHHHHHHhcCCCCccceeeeEee-CCEEEEEe
Confidence 356999999999999999999743 4678999988543 345689999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+. ++|.+++.... .++|.+++.++.|++.||+|||+. +||||||||+|||++.++.+||+|||+++.
T Consensus 166 e~~~-~~l~~~l~~~~-------~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~ 234 (392)
T PHA03207 166 PKYK-CDLFTYVDRSG-------PLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACK 234 (392)
T ss_pred hhcC-CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccc
Confidence 9996 68999885432 489999999999999999999997 999999999999999999999999999976
Q ss_pred cCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.... .....||..|+|||.+.... ++.++|||||||++|||++|+.||....
T Consensus 235 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DvwslGvil~el~~g~~pf~~~~ 291 (392)
T PHA03207 235 LDAHPDTPQCYGWSGTLETNSPELLALDP---------YCAKTDIWSAGLVLFEMSVKNVTLFGKQ 291 (392)
T ss_pred cCcccccccccccccccCccCHhHhcCCC---------CCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence 5322 12346899999999886544 4679999999999999999999996543
|
|
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=286.77 Aligned_cols=204 Identities=20% Similarity=0.295 Sum_probs=166.5
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
.+|...+.||+|+||+||++.. .++..+|+|.+...... .+.+.+|++++++++||||+++++++.. .+..+
T Consensus 5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~ 83 (288)
T cd05093 5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-GDPLI 83 (288)
T ss_pred HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CCccE
Confidence 4577889999999999999984 23567999998654332 5679999999999999999999998765 56899
Q ss_pred EEEeeCCCCChhhhhhccCCC------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 607 LVYKYMPNGDLSSSLYRKTNT------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
+||||+++|+|.+++...... ......++|.++..++.|++.||+|||+. +|+||||||+||++++++.+|
T Consensus 84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~k 160 (288)
T cd05093 84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVK 160 (288)
T ss_pred EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEE
Confidence 999999999999999754310 01123589999999999999999999997 999999999999999999999
Q ss_pred eccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 681 LGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 681 l~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
|+|||+++...... ....++..|+|||...... ++.++|||||||++|||+| |+.||....
T Consensus 161 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~sDiwslG~il~~l~t~g~~p~~~~~ 227 (288)
T cd05093 161 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK---------FTTESDVWSLGVVLWEIFTYGKQPWYQLS 227 (288)
T ss_pred eccCCccccccCCceeecCCCCCccccccCHHHhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999997653221 1223456799999875443 4789999999999999999 899985443
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-33 Score=294.37 Aligned_cols=203 Identities=19% Similarity=0.316 Sum_probs=172.4
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++++....+....+++|-|.||.||.|+|+ -.-.||||.++.+.+..++|+.|+.+|+.++|||+|+|+|+|.. +...
T Consensus 260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~-EpPF 338 (1157)
T KOG4278|consen 260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH-EPPF 338 (1157)
T ss_pred chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhcc-CCCe
Confidence 444444455667789999999999999965 46799999999888889999999999999999999999999976 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|||.|||..|+|.++|++... ..++--..+.+|.||+.||+||..+ .+|||||.++|+|+.++..+||+|||
T Consensus 339 YIiTEfM~yGNLLdYLRecnr-----~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFG 410 (1157)
T KOG4278|consen 339 YIITEFMCYGNLLDYLRECNR-----SEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFG 410 (1157)
T ss_pred EEEEecccCccHHHHHHHhch-----hhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccc
Confidence 999999999999999987543 3356666788999999999999988 89999999999999999999999999
Q ss_pred hhhhcCCC-Cccceee---ecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 686 EVCAQGGD-AHQSRIT---RLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 686 ~a~~~~~~-~~~~~~t---~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
+++...++ .+...|. .-|.|||.+...+ ++.|+|||+|||+|||++| |..|+-
T Consensus 411 LsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNt---------FSiKSDVWAFGVLLWEIATYGMsPYP 468 (1157)
T KOG4278|consen 411 LSRLMTGDTYTAHAGAKFPIKWTAPESLAYNT---------FSIKSDVWAFGVLLWEIATYGMSPYP 468 (1157)
T ss_pred hhhhhcCCceecccCccCcccccCcccccccc---------cccchhhHHHHHHHHHHHhcCCCCCC
Confidence 99988444 3333332 3478999876544 6789999999999999998 888883
|
|
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-32 Score=290.16 Aligned_cols=197 Identities=14% Similarity=0.216 Sum_probs=158.5
Q ss_pred cceeecCCcceEEEEEEc---CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEe-cCCcEEEEEeeCCC
Q 004248 539 ANLIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCME-RENEKFLVYKYMPN 614 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~-~~~~~~lV~Ey~~~ 614 (766)
..+||+|+||.||+|+.. ++..||+|.+.... ....+.+|++++++++|||||++++++.. .+...++||||+++
T Consensus 6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~ 84 (317)
T cd07867 6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH 84 (317)
T ss_pred ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC-CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence 368999999999999854 45789999986443 23468899999999999999999997754 23568999999974
Q ss_pred CChhhhhhccCCC--CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee----CCCCcEEeccchhhh
Q 004248 615 GDLSSSLYRKTNT--EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL----DDKFEVRLGSLSEVC 688 (766)
Q Consensus 615 GsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DFG~a~ 688 (766)
+|.+++...... ......+++..+..++.|++.||+|||+. +|+||||||+||++ ++++.+||+|||+++
T Consensus 85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~ 160 (317)
T cd07867 85 -DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFAR 160 (317)
T ss_pred -cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence 888887532211 11123589999999999999999999997 99999999999999 566899999999998
Q ss_pred hcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... .....+|..|+|||.+..... ++.++|||||||++|||+||+.||..
T Consensus 161 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwSlG~il~el~tg~~~f~~ 218 (317)
T cd07867 161 LFNSPLKPLADLDPVVVTFWYRAPELLLGARH--------YTKAIDIWAIGCIFAELLTSEPIFHC 218 (317)
T ss_pred ccCCCcccccccCcceecccccCcHHhcCCCc--------cCcHHHHHhHHHHHHHHHhCCCCccc
Confidence 65322 233467889999998754321 47899999999999999999999853
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=286.08 Aligned_cols=204 Identities=20% Similarity=0.284 Sum_probs=165.8
Q ss_pred hCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
+++|...+.||+|+||.||+|... .+..||+|.+...... ...|.+|+.++++++|+||+++++++.+ .+.
T Consensus 5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~ 83 (277)
T cd05036 5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFE-RLP 83 (277)
T ss_pred HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc-CCC
Confidence 456888999999999999999854 4678999988643322 4579999999999999999999998776 457
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC---cEEe
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF---EVRL 681 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl 681 (766)
.++||||+++|+|.+++++.+........++|.++..++.||+.||+|||+. +++||||||+||+++.++ .+||
T Consensus 84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl 160 (277)
T cd05036 84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKI 160 (277)
T ss_pred cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEe
Confidence 8999999999999999976543222223589999999999999999999997 899999999999998765 5999
Q ss_pred ccchhhhhcCCCCc-----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 682 GSLSEVCAQGGDAH-----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+|||+++....... ....+..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~~g~~pf~~~ 225 (277)
T cd05036 161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGI---------FTSKTDVWSFGVLLWEIFSLGYMPYPGR 225 (277)
T ss_pred ccCccccccCCccceecCCCCCccHhhCCHHHHhcCC---------cCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999986532211 112235699999875443 5789999999999999997 99998543
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=282.09 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=164.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc------CHHHHHHHHHHHhhcCCCCcccceeEEEec-CCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV------KTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~ 605 (766)
.+|+..+.||+|+||.||+|.. .+|+.||||.+..... ..+.+.+|++++++++||||+++++++.+. ....
T Consensus 2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (265)
T cd06652 2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL 81 (265)
T ss_pred CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence 4688899999999999999985 5689999999864321 134788999999999999999999976543 2457
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+++|+|.+++.+.. .+++.....++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 82 ~~v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg 151 (265)
T cd06652 82 SIFMEHMPGGSIKDQLKSYG-------ALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFG 151 (265)
T ss_pred EEEEEecCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCc
Confidence 89999999999999987543 278888999999999999999997 89999999999999999999999999
Q ss_pred hhhhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 686 EVCAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+++.... ......++..|+|||...... ++.++|||||||++|||++|+.||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~~g~~p~~~ 211 (265)
T cd06652 152 ASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEG---------YGRKADIWSVGCTVVEMLTEKPPWAE 211 (265)
T ss_pred cccccccccccccccccCCCCccccChhhhcCCC---------CCcchhHHHHHHHHHHHhhCCCCCCc
Confidence 9875421 122345788999999875433 46899999999999999999999853
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-32 Score=280.05 Aligned_cols=190 Identities=21% Similarity=0.337 Sum_probs=158.5
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
+.||+|+||.||+|+. .+++.||+|.+..... ....|.+|++++++++||||++++++|.. .+..++||||+++|+
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~ 79 (252)
T cd05084 1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-KQPIYIVMELVQGGD 79 (252)
T ss_pred CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCeEEEEeeccCCc
Confidence 4699999999999995 5789999998764322 24679999999999999999999998766 567999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCcc
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQ 696 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~~ 696 (766)
|.+++.+.. ..++|.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 80 L~~~~~~~~------~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~ 150 (252)
T cd05084 80 FLTFLRTEG------PRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYA 150 (252)
T ss_pred HHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCccccccccc
Confidence 999997543 2489999999999999999999987 9999999999999999999999999998764322111
Q ss_pred -----ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 697 -----SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 697 -----~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
...+..|+|||.+..+. ++.++|||||||++|||++ |+.||..
T Consensus 151 ~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~e~~~~~~~p~~~ 199 (252)
T cd05084 151 STGGMKQIPVKWTAPEALNYGR---------YSSESDVWSFGILLWEAFSLGAVPYAN 199 (252)
T ss_pred ccCCCCCCceeecCchhhcCCC---------CChHHHHHHHHHHHHHHHhCCCCCccc
Confidence 11234699999875544 4679999999999999998 8888853
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=280.14 Aligned_cols=197 Identities=21% Similarity=0.360 Sum_probs=168.8
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|... |+.||||.++......+++.+|+.++++++|+||+++++++.. ++..++||||++
T Consensus 6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e~~~ 83 (256)
T cd05039 6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQ-GNPLYIVTEYMA 83 (256)
T ss_pred hhccceeeeecCCCceEEEEEec-CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcC-CCCeEEEEEecC
Confidence 46888899999999999999865 7889999997655446689999999999999999999998775 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... ..++|..+..++.|++.||.|||+. +|+||||||+||+++.++.+||+|||.++.....
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~ 155 (256)
T cd05039 84 KGSLVDYLRSRGR-----AVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQG 155 (256)
T ss_pred CCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccccccc
Confidence 9999999976432 2489999999999999999999998 9999999999999999999999999999876433
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
......+..|+|||....+. ++.++|||||||++|||++ |+.||...
T Consensus 156 ~~~~~~~~~~~ape~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 203 (256)
T cd05039 156 QDSGKLPVKWTAPEALREKK---------FSTKSDVWSFGILLWEIYSFGRVPYPRI 203 (256)
T ss_pred cccCCCcccccCchhhcCCc---------CCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 33333456799999875443 4679999999999999997 99998544
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-32 Score=293.00 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=175.5
Q ss_pred cHHHHHHHhCC---CCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCccccee
Q 004248 525 TYQQLLAATGD---FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLG 596 (766)
Q Consensus 525 ~~~~l~~~~~~---~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~ 596 (766)
.|-.|.++.-+ |..++.||-|+||+|..+. .++...+|+|.+++...- ......|-.||+....+.||+||.
T Consensus 617 nYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyy 696 (1034)
T KOG0608|consen 617 NYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYY 696 (1034)
T ss_pred hHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEE
Confidence 34455555443 7788999999999999997 566788999999765432 335788999999999999999996
Q ss_pred EEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC
Q 004248 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676 (766)
Q Consensus 597 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~ 676 (766)
.| ++.+.+|+||||++|||+.++|-+.+- +.+.-...|+.++..|+++.|.. ++|||||||.|||||.+
T Consensus 697 SF-QDkdnLYFVMdYIPGGDmMSLLIrmgI-------FeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrd 765 (1034)
T KOG0608|consen 697 SF-QDKDNLYFVMDYIPGGDMMSLLIRMGI-------FEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRD 765 (1034)
T ss_pred Ee-ccCCceEEEEeccCCccHHHHHHHhcc-------CHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccC
Confidence 44 446789999999999999999987654 77777888999999999999997 99999999999999999
Q ss_pred CcEEeccchhhhhcC----------C-----------------------------------CCccceeeecccCCCCCCC
Q 004248 677 FEVRLGSLSEVCAQG----------G-----------------------------------DAHQSRITRLLRLPQSSEQ 711 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~----------~-----------------------------------~~~~~~~t~~y~aPe~~~~ 711 (766)
|++||+|||++.... + ..+..+||..|+|||++..
T Consensus 766 GHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r 845 (1034)
T KOG0608|consen 766 GHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLAR 845 (1034)
T ss_pred CceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcc
Confidence 999999999986320 0 0112478999999999876
Q ss_pred CceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccce
Q 004248 712 GSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQT 757 (766)
Q Consensus 712 ~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~ 757 (766)
.. ++..||+||.|||||||+.|+.||....++..|..
T Consensus 846 ~g---------~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~k 882 (1034)
T KOG0608|consen 846 TG---------YTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYK 882 (1034)
T ss_pred cC---------ccccchhhHhhHHHHHHhhCCCCccCCCCCcceee
Confidence 54 48899999999999999999999987777765543
|
|
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=292.65 Aligned_cols=195 Identities=21% Similarity=0.199 Sum_probs=160.8
Q ss_pred ccceeecC--CcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 538 DANLIKNG--HSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 538 ~~~~ig~G--~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
..++||+| +||+||++. ..+|+.||||+++..... .+.+.+|+++++.++|||||++++++.. ++..++||||
T Consensus 2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-~~~~~lv~e~ 80 (327)
T cd08227 2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-DNELWVVTSF 80 (327)
T ss_pred hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEE-CCEEEEEEec
Confidence 35789999 678999998 467999999999764332 3467789999999999999999998876 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++..+.. ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|++|||.+....
T Consensus 81 ~~~~~l~~~~~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~ 152 (327)
T cd08227 81 MAYGSAKDLICTHFM-----DGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMI 152 (327)
T ss_pred cCCCcHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhccc
Confidence 999999999965422 2489999999999999999999987 99999999999999999999999998654321
Q ss_pred C----------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 G----------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ~----------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. ......++..|+|||.+.....+ ++.++|||||||++|||+||+.||..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~DiwslG~il~el~~g~~pf~~ 212 (327)
T cd08227 153 NHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQG-------YDAKSDIYSVGITACELANGHVPFKD 212 (327)
T ss_pred cccccccccccccccccceecccChHHhhcccCC-------CCchhhHHHHHHHHHHHHHCCCCCCC
Confidence 0 11223456789999987543222 47899999999999999999999964
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=286.83 Aligned_cols=204 Identities=20% Similarity=0.334 Sum_probs=163.3
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCc--EEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGI--PVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~--~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..++||+|+||.||+|... ++. .+|+|.++.... ..+.|.+|+++++++ +||||+++++++.. .+..|+
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-~~~~~l 80 (297)
T cd05089 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACEN-RGYLYI 80 (297)
T ss_pred ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEcc-CCcceE
Confidence 46888899999999999999864 343 578888864221 246799999999999 79999999997765 567999
Q ss_pred EEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 608 VYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
||||+++|+|.+++++..... .....+++.++..++.|++.||+|||+. +|+||||||+|||+++++.
T Consensus 81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~ 157 (297)
T cd05089 81 AIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLA 157 (297)
T ss_pred EEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCe
Confidence 999999999999997543210 0113589999999999999999999987 9999999999999999999
Q ss_pred EEeccchhhhhcCCCCc--cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 679 VRLGSLSEVCAQGGDAH--QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~~~--~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
+||+|||++........ ....+..|+|||...... ++.++|||||||++|||+| |+.||....
T Consensus 158 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwSlG~il~el~t~g~~pf~~~~ 223 (297)
T cd05089 158 SKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSV---------YTTKSDVWSFGVLLWEIVSLGGTPYCGMT 223 (297)
T ss_pred EEECCcCCCccccceeccCCCCcCccccCchhhccCC---------CCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence 99999999865422111 112244699999875443 4679999999999999998 999996543
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=282.07 Aligned_cols=202 Identities=21% Similarity=0.293 Sum_probs=160.1
Q ss_pred ceeecCCcceEEEEEEcC---CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGILEG---GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~---g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+.||+|+||.||+|...+ +..+|+|+++..... ...|.+|+.++++++||||+++++++.+ ....++||||+++
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~ 79 (269)
T cd05087 1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTE-VTPYLLVMEFCPL 79 (269)
T ss_pred CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CCCcEEEEECCCC
Confidence 368999999999998543 467999998654432 3478999999999999999999997765 4578999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~ 694 (766)
|+|.++++..... .....++..+..++.|++.|++|||+. +++||||||+||+++.++++|++|||+++......
T Consensus 80 g~L~~~l~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~ 154 (269)
T cd05087 80 GDLKGYLRSCRKA--ELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKED 154 (269)
T ss_pred CcHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCcc
Confidence 9999999754321 123467888899999999999999997 99999999999999999999999999987543221
Q ss_pred -----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 695 -----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 695 -----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
....++..|+|||.+...... .+...++.++|||||||++|||++ |+.||...
T Consensus 155 ~~~~~~~~~~~~~y~aPE~~~~~~~~--~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~ 213 (269)
T cd05087 155 YYVTPDQLWVPLRWIAPELVDEVHGN--LLVVDQTKESNVWSLGVTIWELFELGSQPYRHL 213 (269)
T ss_pred eeecCCCcCCcccccCHhHhcccccc--ccccCCCccchhHHHHHHHHHHHhCCCCCCCCC
Confidence 123456779999987532211 011125789999999999999996 99999543
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-32 Score=284.11 Aligned_cols=200 Identities=19% Similarity=0.352 Sum_probs=169.8
Q ss_pred HhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+..+|+..++||+|+||.||+|...+++.||+|.+..... ..+++.+|+.++++++||||+++++++.. .+..++|||
T Consensus 4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e 82 (261)
T cd05148 4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV-GEPVYIITE 82 (261)
T ss_pred cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEec-CCCeEEEEe
Confidence 4456888999999999999999987799999999976554 35679999999999999999999998765 567999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.++++.... ..+++.++..++.|++.|++|||+. +|+||||||+||++++++.+||+|||.+...
T Consensus 83 ~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~ 154 (261)
T cd05148 83 LMEKGSLLAFLRSPEG-----QVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLI 154 (261)
T ss_pred ecccCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhc
Confidence 9999999999976432 3489999999999999999999987 8999999999999999999999999999765
Q ss_pred CCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 691 GGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 691 ~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.... ....++..|++||...... ++.++|||||||++|||++ |+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~PE~~~~~~---------~~~~~DiwslG~~l~~l~~~g~~p~~~~ 208 (261)
T cd05148 155 KEDVYLSSDKKIPYKWTAPEAASHGT---------FSTKSDVWSFGILLYEMFTYGQVPYPGM 208 (261)
T ss_pred CCccccccCCCCceEecCHHHHccCC---------CCchhhHHHHHHHHHHHHcCCCCCCCcC
Confidence 3221 1223456799999765433 4679999999999999998 89998543
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=283.13 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=168.5
Q ss_pred HHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 529 LLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 529 l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++.+++++.....||+|+||.||+|+ ..++..||+|.+...... .+.+.+|++++++++|+||+++++++.. ++..+
T Consensus 3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~ 81 (268)
T cd06624 3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSE-NGFFK 81 (268)
T ss_pred cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeecc-CCEEE
Confidence 34466777778899999999999999 456889999998755433 5679999999999999999999998765 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCC--CHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEecc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSL--DWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGS 683 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~D 683 (766)
+|+||+++++|.++++.+.. .+ ++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|
T Consensus 82 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~d 152 (268)
T cd06624 82 IFMEQVPGGSLSALLRSKWG------PLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISD 152 (268)
T ss_pred EEEecCCCCCHHHHHHHhcc------cCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEec
Confidence 99999999999999975422 24 7888899999999999999987 9999999999999986 67999999
Q ss_pred chhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||.+...... .....++..|+|||.......+ ++.++|||||||++|||++|+.||..
T Consensus 153 fg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~-------~~~~~Dv~slGvvl~~l~~g~~p~~~ 213 (268)
T cd06624 153 FGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRG-------YGAPADIWSLGCTIVEMATGKPPFIE 213 (268)
T ss_pred chhheecccCCCccccCCCCccccChhhhcccccc-------CCchhhhHHHHHHHHHHHhCCCCCcc
Confidence 9998765321 2223467889999987544322 46899999999999999999999854
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=303.82 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=162.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
..|...+.||+|+||.||+|.. .+++.||||... ...+.+|++++++++|||||++++++.. ++..++||||+
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-----~~~~~~E~~iL~~L~HpnIv~l~~~~~~-~~~~~lv~e~~ 242 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW-----YASSVHEARLLRRLSHPAVLALLDVRVV-GGLTCLVLPKY 242 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc-----ccCHHHHHHHHHHCCCCCCCcEEEEEEE-CCEEEEEEEcc
Confidence 3588889999999999999995 458899999642 2346789999999999999999998776 56789999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
. |+|.+++.... ..++|.+++.|+.|+++||+|||+. +||||||||+|||++.++.+||+|||+++....
T Consensus 243 ~-~~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~ 312 (461)
T PHA03211 243 R-SDLYTYLGARL------RPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARG 312 (461)
T ss_pred C-CCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceeccc
Confidence 5 79999886533 2489999999999999999999998 999999999999999999999999999976532
Q ss_pred C-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 D-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....||..|+|||.+.... ++.++|||||||++|||++|..|++..
T Consensus 313 ~~~~~~~~~~~GT~~Y~APE~~~~~~---------~~~~sDvwSlGviL~El~~g~~~lf~~ 365 (461)
T PHA03211 313 SWSTPFHYGIAGTVDTNAPEVLAGDP---------YTPSVDIWSAGLVIFEAAVHTASLFSA 365 (461)
T ss_pred ccccccccccCCCcCCcCHHHHcCCC---------CCchHHHHHHHHHHHHHHHcCCCcccC
Confidence 2 12345899999999886544 478999999999999999998776543
|
|
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=281.29 Aligned_cols=196 Identities=20% Similarity=0.333 Sum_probs=165.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|...+.||+|+||.||+|...++..||+|++.......+.|.+|++++++++|||++++++++. ++..++||||++
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--~~~~~~v~e~~~ 83 (260)
T cd05069 6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS--EEPIYIVTEFMG 83 (260)
T ss_pred HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc--CCCcEEEEEcCC
Confidence 357778899999999999999877778999998765555678999999999999999999998663 356899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++++... ..++|..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++.....
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~ 155 (260)
T cd05069 84 KGSLLDFLKEGDG-----KYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDN 155 (260)
T ss_pred CCCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCC
Confidence 9999999975432 3489999999999999999999987 8999999999999999999999999999765322
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. ....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 156 ~~~~~~~~~~~~~y~~Pe~~~~~~---------~~~~~Di~slG~~l~el~t~g~~p~~~ 206 (260)
T cd05069 156 EYTARQGAKFPIKWTAPEAALYGR---------FTIKSDVWSFGILLTELVTKGRVPYPG 206 (260)
T ss_pred cccccCCCccchhhCCHHHhccCC---------cChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 1 1223456799999765433 4789999999999999999 8999854
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=288.72 Aligned_cols=202 Identities=21% Similarity=0.356 Sum_probs=162.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc--EEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI--PVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~--~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|.. .++. .+|+|++..... ..++|.+|++++.++ +||||+++++++.. ++..|+
T Consensus 7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~-~~~~~l 85 (303)
T cd05088 7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-RGYLYL 85 (303)
T ss_pred hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECC-CCCceE
Confidence 4688889999999999999985 4454 468887754322 245789999999999 89999999997765 567999
Q ss_pred EEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 608 VYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
||||+++|+|.+++++..... .....+++.+++.++.|++.|++|||+. +|+||||||+|||+++++.
T Consensus 86 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~ 162 (303)
T cd05088 86 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYV 162 (303)
T ss_pred EEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCc
Confidence 999999999999997543210 1123589999999999999999999987 9999999999999999999
Q ss_pred EEeccchhhhhcCCCCc--cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 679 VRLGSLSEVCAQGGDAH--QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~~~--~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+||+|||+++....... ....+..|+|||...... ++.++|||||||++|||+| |..||..
T Consensus 163 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~~ 226 (303)
T cd05088 163 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV---------YTTNSDVWSYGVLLWEIVSLGGTPYCG 226 (303)
T ss_pred EEeCccccCcccchhhhcccCCCcccccCHHHHhccC---------CcccccchhhhhHHHHHHhcCCCCccc
Confidence 99999999864321111 112345699999764433 4689999999999999998 9999853
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=286.25 Aligned_cols=203 Identities=19% Similarity=0.222 Sum_probs=170.0
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++|+..+.||+|+||.||+|.. .++..||+|.+...... .+.|.+|++++++++||||+++++++.. ++..|+|||
T Consensus 4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 82 (280)
T cd06611 4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFY-ENKLWILIE 82 (280)
T ss_pred hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEec-CCeEEEEee
Confidence 35688889999999999999995 56899999998754432 4679999999999999999999998775 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+.+ ..+++.+...++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 83 ~~~~~~L~~~~~~~~------~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~ 153 (280)
T cd06611 83 FCDGGALDSIMLELE------RGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKN 153 (280)
T ss_pred ccCCCcHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhh
Confidence 999999999987543 2489999999999999999999998 9999999999999999999999999988654
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....++..|++||........... ++.++|||||||++|||++|+.||...
T Consensus 154 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~----~~~~sDi~slG~il~~l~~g~~p~~~~ 211 (280)
T cd06611 154 KSTLQKRDTFIGTPYWMAPEVVACETFKDNP----YDYKADIWSLGITLIELAQMEPPHHEL 211 (280)
T ss_pred cccccccceeecchhhcCHHHHhhcccCCCC----CCccccHHHHHHHHHHHHhCCCCcccC
Confidence 321 2234578889999987543322212 578999999999999999999998543
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=278.93 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=167.2
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|++|.||+++. .+++.||+|++...... .+.+.+|++++++++|||++++++.+...+...|+|||
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e 80 (257)
T cd08223 1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG 80 (257)
T ss_pred CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence 477889999999999999994 56789999999654322 45688999999999999999999866543446899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++..... ..+++.++..++.|++.|++|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 81 ~~~~~~l~~~l~~~~~-----~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~ 152 (257)
T cd08223 81 FCEGGDLYHKLKEQKG-----KLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVL 152 (257)
T ss_pred ccCCCcHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEe
Confidence 9999999999975332 3489999999999999999999997 9999999999999999999999999998765
Q ss_pred CC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. ......++..|+|||...... ++.++|||||||+++||++|+.||...+
T Consensus 153 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~~l~~g~~~~~~~~ 206 (257)
T cd08223 153 ENQCDMASTLIGTPYYMSPELFSNKP---------YNYKSDVWALGCCVYEMATLKHAFNAKD 206 (257)
T ss_pred cccCCccccccCCcCccChhHhcCCC---------CCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence 32 122345678899999876543 4679999999999999999999996433
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-32 Score=293.44 Aligned_cols=203 Identities=17% Similarity=0.217 Sum_probs=164.8
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|+..+.||+|+||.||+|.. .+++.||||+++..... .+.+.+|++++.++ +|||||+++++|...+..
T Consensus 7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~ 86 (343)
T cd05103 7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP 86 (343)
T ss_pred hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence 5688899999999999999973 35789999999754332 45688999999999 689999999988765567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCC--------------------------------------------------------
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTE-------------------------------------------------------- 628 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~-------------------------------------------------------- 628 (766)
.++||||+++|+|.++++......
T Consensus 87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (343)
T cd05103 87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA 166 (343)
T ss_pred eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence 899999999999999987532100
Q ss_pred ----CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-----Ccccee
Q 004248 629 ----DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD-----AHQSRI 699 (766)
Q Consensus 629 ----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~ 699 (766)
.....++|.++..++.|+++||+|||+. +|+||||||+||++++++++||+|||+++..... .....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~ 243 (343)
T cd05103 167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARL 243 (343)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCC
Confidence 0012478999999999999999999997 9999999999999999999999999998764221 111233
Q ss_pred eecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 700 TRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 700 t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+..|+|||...... ++.++|||||||++|||++ |..||..
T Consensus 244 ~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~~ 284 (343)
T cd05103 244 PLKWMAPETIFDRV---------YTIQSDVWSFGVLLWEIFSLGASPYPG 284 (343)
T ss_pred CcceECcHHhcCCC---------CCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 55699999875443 4789999999999999997 9999854
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=280.53 Aligned_cols=200 Identities=19% Similarity=0.307 Sum_probs=161.7
Q ss_pred CCccceeecCCcceEEEEEEc-C---CcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCC-----
Q 004248 536 FSDANLIKNGHSGDLFRGILE-G---GIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMEREN----- 603 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~-~---g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----- 603 (766)
|+..+.||+|+||.||+|... + +..||||+++..... .+.+.+|++.+++++||||+++++++...+.
T Consensus 1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 80 (273)
T cd05035 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP 80 (273)
T ss_pred CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence 456789999999999999853 2 478999998754332 3578999999999999999999998765322
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++||||+++|+|.+++...... .....+++.....++.|++.||+|||+. +|+||||||+||++++++.+||+|
T Consensus 81 ~~~~v~e~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~d 156 (273)
T cd05035 81 KPMVILPFMKHGDLHSFLLYSRLG-GLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVAD 156 (273)
T ss_pred ccEEEEeccCCCCHHHHHHHhhcc-CCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECC
Confidence 379999999999999998654321 1223589999999999999999999997 999999999999999999999999
Q ss_pred chhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 684 LSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
||+++...... .....+..|+|||...... ++.++|||||||++|||++ |+.||..
T Consensus 157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~~Dv~SlG~il~el~~~g~~p~~~ 218 (273)
T cd05035 157 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRV---------YTSKSDVWAFGVTMWEIATRGQTPYPG 218 (273)
T ss_pred ccceeeccccccccccccccCCccccCHhhcccCC---------CCcccchHHHHHHHHHHHhCCCCCCCC
Confidence 99998653211 1122356799999875433 4789999999999999999 8888854
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=286.30 Aligned_cols=200 Identities=18% Similarity=0.251 Sum_probs=165.5
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++++|...+.||+|+||.||+|.. .+|+.||+|++...... ...+.+|++++++++|+||+++++++.. ++..|+|
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-~~~~~lv 81 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHT-KETLTFV 81 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEec-CCeEEEE
Confidence 457899999999999999999984 56889999998654322 3467899999999999999999997765 5678999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||++ ++|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++++||+|||+++
T Consensus 82 ~e~~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~ 151 (291)
T cd07870 82 FEYMH-TDLAQYMIQHPG------GLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLAR 151 (291)
T ss_pred Eeccc-CCHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEecccccc
Confidence 99996 688777754322 378888999999999999999997 99999999999999999999999999987
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
..... .....++..|+|||....... ++.++|||||||++|||+||+.||....
T Consensus 152 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~~l~~l~~g~~~f~~~~ 208 (291)
T cd07870 152 AKSIPSQTYSSEVVTLWYRPPDVLLGATD--------YSSALDIWGAGCIFIEMLQGQPAFPGVS 208 (291)
T ss_pred ccCCCCCCCCCccccccccCCceeecCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence 64221 223356788999998754321 4678999999999999999999996443
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-33 Score=298.98 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=168.9
Q ss_pred CCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.++..+|.|+||+||||+ ..++...|-|.|...... .++|.-|++||+.++||+||+|++.|+. ++.+++..|||.
T Consensus 34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~-enkLwiliEFC~ 112 (1187)
T KOG0579|consen 34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYF-ENKLWILIEFCG 112 (1187)
T ss_pred HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhc-cCceEEEEeecC
Confidence 3455789999999999998 555667788888655443 6789999999999999999999987665 578999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc---
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ--- 690 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~--- 690 (766)
||-.+.++-.-+ ..+.+.++..+++|++.||.|||+. +|||||||+.|||++-+|.++++|||.+...
T Consensus 113 GGAVDaimlEL~------r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t 183 (1187)
T KOG0579|consen 113 GGAVDAIMLELG------RVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKST 183 (1187)
T ss_pred CchHhHHHHHhc------cccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhH
Confidence 999998876543 3599999999999999999999998 9999999999999999999999999987432
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
........||++|||||+..+.+....+ |+.++||||||++|.||+-+.+|-.
T Consensus 184 ~qkRDsFIGTPYWMAPEVvmCET~KD~P----YDykaDiWSlGITLIEMAqiEPPHh 236 (1187)
T KOG0579|consen 184 RQKRDSFIGTPYWMAPEVVMCETFKDQP----YDYKADIWSLGITLIEMAQIEPPHH 236 (1187)
T ss_pred HhhhccccCCcccccchheeeccccCCC----chhhhhHHhhhhHHHHHhccCCCcc
Confidence 1234467899999999998887655445 6899999999999999999999863
|
|
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=284.20 Aligned_cols=193 Identities=21% Similarity=0.332 Sum_probs=161.3
Q ss_pred CCccceeecCCcceEEEEE-----EcCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGI-----LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-----~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~l 607 (766)
|+..+.||+|+||+||++. ..++..||+|.++.... ..+.|.+|++++++++||||+++++++...+ ...++
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 85 (283)
T cd05080 6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL 85 (283)
T ss_pred ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence 4788999999999998865 24678999999875433 3567899999999999999999999876532 35899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++... .++|.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++
T Consensus 86 v~e~~~~~~l~~~~~~~--------~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~ 154 (283)
T cd05080 86 IMEYVPLGSLRDYLPKH--------KLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLA 154 (283)
T ss_pred EecCCCCCCHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccc
Confidence 99999999999999642 389999999999999999999997 9999999999999999999999999999
Q ss_pred hhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+...... ....++..|++||...... ++.++|||||||++|||+||+.|+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~---------~~~~~Di~slG~~l~el~tg~~p~~~ 212 (283)
T cd05080 155 KAVPEGHEYYRVREDGDSPVFWYAVECLKENK---------FSYASDVWSFGVTLYELLTHCDSKQS 212 (283)
T ss_pred cccCCcchhhccCCCCCCCceeeCHhHhcccC---------CCcccccHHHHHHHHHHHhCCCCCCC
Confidence 7653221 1123455689999875443 47899999999999999999999853
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-32 Score=284.62 Aligned_cols=197 Identities=21% Similarity=0.291 Sum_probs=164.9
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|++|.||+|+. .+++.||||+++.... ..+.+.+|++++++++||||+++++++.. ++..|+|||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e 79 (285)
T cd07861 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQ-ESRLYLIFE 79 (285)
T ss_pred CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEee-CCeEEEEEe
Confidence 477889999999999999995 5789999999865332 24678899999999999999999998775 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ |+|.+++..... ...+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++..
T Consensus 80 ~~~-~~l~~~~~~~~~----~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 151 (285)
T cd07861 80 FLS-MDLKKYLDSLPK----GQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAF 151 (285)
T ss_pred cCC-CCHHHHHhcCCC----CCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeec
Confidence 998 689988864321 13589999999999999999999997 9999999999999999999999999998755
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
... .....++..|+|||....... ++.++|||||||++|||+||+.||..
T Consensus 152 ~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~il~~l~tg~~~~~~ 204 (285)
T cd07861 152 GIPVRVYTHEVVTLWYRAPEVLLGSPR--------YSTPVDIWSIGTIFAEMATKKPLFHG 204 (285)
T ss_pred CCCcccccCCcccccccChHHhcCCCC--------cCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 322 122356788999997654321 46799999999999999999999853
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=284.53 Aligned_cols=196 Identities=18% Similarity=0.204 Sum_probs=165.4
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+.. +|+.||+|++..... ..+.+.+|++++++++||||+++++++.. .+..++||
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~~v~ 79 (286)
T cd07847 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRR-KRKLHLVF 79 (286)
T ss_pred CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEee-CCEEEEEE
Confidence 46888899999999999999964 689999999864332 24568899999999999999999998765 56789999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|..++.... .++|.++..++.|++.||+|||+. +|+||||||+||+++.++++||+|||++..
T Consensus 80 e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~ 149 (286)
T cd07847 80 EYCDHTVLNELEKNPR-------GVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARI 149 (286)
T ss_pred eccCccHHHHHHhCCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECcccccee
Confidence 9999988888765432 389999999999999999999997 999999999999999999999999999986
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||.+..... ++.++|||||||++|||+||+.||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Di~slG~i~~~l~~g~~p~~~ 203 (286)
T cd07847 150 LTGPGDDYTDYVATRWYRAPELLVGDTQ--------YGPPVDVWAIGCVFAELLTGQPLWPG 203 (286)
T ss_pred cCCCcccccCcccccccCCHHHHhCCCC--------cCchhhhHHHHHHHHHHHhCCCCCCC
Confidence 6332 223456788999998654321 46899999999999999999999853
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=285.30 Aligned_cols=203 Identities=19% Similarity=0.297 Sum_probs=166.7
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|...+.||+|+||.||+|+. .++..||+|.+...... .+.+.+|++++++++||||+++++++.. ++..+
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~ 83 (291)
T cd05094 5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGD-GDPLI 83 (291)
T ss_pred HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEcc-CCceE
Confidence 3577789999999999999973 23567999998654433 4579999999999999999999998765 56799
Q ss_pred EEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 607 LVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
+||||+++|+|.+++...... ......++|.+++.++.|++.|++|||++ +|+||||||+||++++++
T Consensus 84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~~ 160 (291)
T cd05094 84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANL 160 (291)
T ss_pred EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCC
Confidence 999999999999999754320 01123489999999999999999999998 999999999999999999
Q ss_pred cEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 161 ~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~t~g~~p~~~~ 229 (291)
T cd05094 161 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK---------FTTESDVWSFGVILWEIFTYGKQPWFQL 229 (291)
T ss_pred cEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999765322 12234567899999875443 4789999999999999999 99998543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=279.60 Aligned_cols=198 Identities=18% Similarity=0.205 Sum_probs=167.8
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+|+..++||+|+||.||++.. .+++.||+|.++.... ..+.+.+|++++++++||||+++++.+.. ++..|+||||
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~ 79 (255)
T cd08219 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEA-DGHLYIVMEY 79 (255)
T ss_pred CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEE-CCEEEEEEee
Confidence 477889999999999999984 5789999999865332 24678899999999999999999997765 5789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++..... ..+++.....++.|++.||.|||+. +|+|+||||+||++++++.++++|||.++...
T Consensus 80 ~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~ 151 (255)
T cd08219 80 CDGGDLMQKIKLQRG-----KLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLT 151 (255)
T ss_pred CCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeec
Confidence 999999999865432 3478999999999999999999997 99999999999999999999999999987653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. .....++..|+|||...... ++.++|||||||++|||++|+.||....
T Consensus 152 ~~~~~~~~~~~~~~~~aPE~~~~~~---------~~~~~Dv~slG~i~~~l~~g~~p~~~~~ 204 (255)
T cd08219 152 SPGAYACTYVGTPYYVPPEIWENMP---------YNNKSDIWSLGCILYELCTLKHPFQANS 204 (255)
T ss_pred ccccccccccCCccccCHHHHccCC---------cCchhhhhhhchhheehhhccCCCCCCC
Confidence 22 22345788899999875443 4789999999999999999999996543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-32 Score=288.30 Aligned_cols=198 Identities=18% Similarity=0.229 Sum_probs=164.9
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||+|+. .+|+.||+|+++..... .+.+.+|++++++++||||+++++++.+ .+..++|+|
T Consensus 1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 79 (284)
T cd07839 1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHS-DKKLTLVFE 79 (284)
T ss_pred CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhcc-CCceEEEEe
Confidence 477789999999999999995 57899999999654322 3568889999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ |+|.+++.... ..+++.....++.||++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 80 ~~~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~ 149 (284)
T cd07839 80 YCD-QDLKKYFDSCN------GDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAF 149 (284)
T ss_pred cCC-CCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhcc
Confidence 997 58888876432 2489999999999999999999997 9999999999999999999999999999865
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
... .....++..|+|||.+..... ++.++|||||||++|||+||+.|++....
T Consensus 150 ~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~tg~~p~~~~~~ 205 (284)
T cd07839 150 GIPVRCYSAEVVTLWYRPPDVLFGAKL--------YSTSIDMWSAGCIFAELANAGRPLFPGND 205 (284)
T ss_pred CCCCCCcCCCccccCCcChHHHhCCcc--------cCcHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 322 223456788999998754321 47899999999999999999999765443
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-33 Score=323.72 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=166.4
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
-+++....||.|.||.||-|. .++|...|||.+.-.... ...+.+|+.++..++|||+|+.+|+-.. +++.+|.|
T Consensus 1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvH-Rekv~IFM 1313 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVH-REKVYIFM 1313 (1509)
T ss_pred eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeec-HHHHHHHH
Confidence 345667889999999999999 788999999998654332 3467889999999999999999997665 46799999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||++|+|.+++...+. .++.-...+..|++.|++|||++ +||||||||+||+++.+|-+|.+|||.|..
T Consensus 1314 EyC~~GsLa~ll~~gri-------~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHGRI-------EDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509)
T ss_pred HHhccCcHHHHHHhcch-------hhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeE
Confidence 99999999999975432 66777778899999999999998 999999999999999999999999999976
Q ss_pred cCCC-------CccceeeecccCCCCCCCCc-eeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 690 QGGD-------AHQSRITRLLRLPQSSEQGS-SGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 690 ~~~~-------~~~~~~t~~y~aPe~~~~~~-~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+... .....||++|||||++.+.. .|. .-++||||+|||++||+|||+|+.
T Consensus 1384 i~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~-------~~A~DiWslGCVVlEM~tGkrPW~ 1442 (1509)
T KOG4645|consen 1384 IKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGH-------GGAADIWSLGCVVLEMATGKRPWA 1442 (1509)
T ss_pred ecCchhcCCHHHHhhcCCchhcCchhhcccccCCC-------CcchhhhcccceEEEeecCCCchh
Confidence 5322 23568999999999987654 333 357899999999999999999994
|
|
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=285.96 Aligned_cols=196 Identities=20% Similarity=0.299 Sum_probs=168.6
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.+|+..+.||.|+||.||+|. ..+++.||+|.+...... .+.+.+|++++++++||||+++++++.. ++..|+|+||
T Consensus 19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~ 97 (296)
T cd06655 19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLV-GDELFVVMEY 97 (296)
T ss_pred ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEec-CceEEEEEEe
Confidence 358888999999999999998 467899999999754433 5678999999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++.+. .++|.++..++.|++.|++|||+. +++||||||+||+++.++.+||+|||+++...
T Consensus 98 ~~~~~L~~~~~~~--------~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~ 166 (296)
T cd06655 98 LAGGSLTDVVTET--------CMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQIT 166 (296)
T ss_pred cCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcc
Confidence 9999999988642 389999999999999999999997 99999999999999999999999999987653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. .....++..|+|||...... ++.++|||||||++|||+||+.||...+
T Consensus 167 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slGvil~~lltg~~pf~~~~ 219 (296)
T cd06655 167 PEQSKRSTMVGTPYWMAPEVVTRKA---------YGPKVDIWSLGIMAIEMVEGEPPYLNEN 219 (296)
T ss_pred cccccCCCcCCCccccCcchhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 22 22345778899999876443 4679999999999999999999996543
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=287.98 Aligned_cols=198 Identities=18% Similarity=0.266 Sum_probs=165.1
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|++|.||+|+.. +++.||||.+...... ...+.+|++++++++||||+++++++.+ ++..++|||
T Consensus 5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 83 (291)
T cd07844 5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHT-KKTLTLVFE 83 (291)
T ss_pred cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEec-CCeEEEEEe
Confidence 57888999999999999999954 6899999998654322 3467889999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ ++|.+++.+... .+++.....++.|++.||.|||+. +|+||||||+||++++++.+||+|||+++..
T Consensus 84 ~~~-~~L~~~~~~~~~------~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~ 153 (291)
T cd07844 84 YLD-TDLKQYMDDCGG------GLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAK 153 (291)
T ss_pred cCC-CCHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECcccccccc
Confidence 998 499998875432 488999999999999999999997 9999999999999999999999999998754
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....++..|+|||....... ++.++||||+||++|||++|+.||....
T Consensus 154 ~~~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Dv~slG~il~~l~~g~~~~~~~~ 208 (291)
T cd07844 154 SVPSKTYSNEVVTLWYRPPDVLLGSTE--------YSTSLDMWGVGCIFYEMATGRPLFPGST 208 (291)
T ss_pred CCCCccccccccccccCCcHHhhcCcc--------cCcHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 221 122345778999997653221 4789999999999999999999995443
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-32 Score=285.00 Aligned_cols=192 Identities=28% Similarity=0.439 Sum_probs=157.9
Q ss_pred cceeecCCcceEEEEEEc-----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 539 ANLIKNGHSGDLFRGILE-----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.+.||+|+||.||+|.+. .+..|+||.++..... .++|.+|++.+++++||||++++|+|.. .+..++||||
T Consensus 4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~-~~~~~lv~e~ 82 (259)
T PF07714_consen 4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIE-NEPLFLVMEY 82 (259)
T ss_dssp EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEES-SSSEEEEEE-
T ss_pred eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccc-cccccccccc
Confidence 578999999999999966 3678999999653322 5789999999999999999999999985 4579999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|++|+|.++|+.... ..+++.++..++.|||+||+|||+. +|+||||+++||++++++.+||+|||+++...
T Consensus 83 ~~~g~L~~~L~~~~~-----~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~ 154 (259)
T PF07714_consen 83 CPGGSLDDYLKSKNK-----EPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPIS 154 (259)
T ss_dssp -TTEBHHHHHHHTCT-----TTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETT
T ss_pred ccccccccccccccc-----ccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence 999999999987622 3589999999999999999999998 89999999999999999999999999997662
Q ss_pred CC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 692 GD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 692 ~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.. .........|+|||...... ++.++||||||+++||++| |+.|+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~aPE~~~~~~---------~~~ksDVysfG~~l~ei~~~~~~p~~~ 208 (259)
T PF07714_consen 155 EKSKYKNDSSQQLPLRYLAPEVLKDGE---------YTKKSDVYSFGMLLYEILTLGKFPFSD 208 (259)
T ss_dssp TSSSEEESTTSESGGGGS-HHHHHHSE---------ESHHHHHHHHHHHHHHHHTTSSGTTTT
T ss_pred ccccccccccccccccccccccccccc---------ccccccccccccccccccccccccccc
Confidence 11 12234566789999765443 4889999999999999999 7888854
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=295.25 Aligned_cols=192 Identities=21% Similarity=0.241 Sum_probs=161.4
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
...+|...+.||+|+||.||+|+. .+++.||+|.... .....|+.++++++|||||++++++.. .+..++|||
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~-----~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 137 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK-----GTTLIEAMLLQNVNHPSVIRMKDTLVS-GAITCMVLP 137 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc-----cccHHHHHHHHhCCCCCCcChhheEEe-CCeeEEEEE
Confidence 345799999999999999999995 4578999997532 234579999999999999999998876 567899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+. |+|.+++.... ..++|.++..|+.||+.||+|||+. +||||||||+|||++.++.+||+|||+++..
T Consensus 138 ~~~-~~l~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~ 207 (357)
T PHA03209 138 HYS-SDLYTYLTKRS------RPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFP 207 (357)
T ss_pred ccC-CcHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCcccccc
Confidence 996 69999886543 2489999999999999999999997 9999999999999999999999999999754
Q ss_pred C--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 G--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. .......+|..|+|||.+.... ++.++|||||||++|||+++..|++.
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvvl~ell~~~~~~f~ 258 (357)
T PHA03209 208 VVAPAFLGLAGTVETNAPEVLARDK---------YNSKADIWSAGIVLFEMLAYPSTIFE 258 (357)
T ss_pred ccCcccccccccccccCCeecCCCC---------CCchhhHHHHHHHHHHHHHcCCcccc
Confidence 2 2233456899999999886544 47899999999999999997666643
|
|
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=286.79 Aligned_cols=196 Identities=19% Similarity=0.264 Sum_probs=168.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|...+.||+|+||.||+|+. .+++.||+|.+...... .+.+.+|+.++++++||||+++++++.. ++..|+||||
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~lv~e~ 97 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-GDELWVVMEY 97 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEeecc
Confidence 5688899999999999999994 67999999999764433 5678899999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++.+. .+++.++..++.|++.||.|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 98 ~~~~~L~~~~~~~--------~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~ 166 (297)
T cd06656 98 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 166 (297)
T ss_pred cCCCCHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEcc
Confidence 9999999998642 378999999999999999999987 99999999999999999999999999987653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. .....++..|++||...... ++.++|||||||++|||+||+.||...+
T Consensus 167 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slGvil~~l~tg~~pf~~~~ 219 (297)
T cd06656 167 PEQSKRSTMVGTPYWMAPEVVTRKA---------YGPKVDIWSLGIMAIEMVEGEPPYLNEN 219 (297)
T ss_pred CCccCcCcccCCccccCHHHHcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 22 22345778899999876543 4689999999999999999999996443
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=277.07 Aligned_cols=190 Identities=22% Similarity=0.377 Sum_probs=160.2
Q ss_pred ceeecCCcceEEEEEEcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCCh
Q 004248 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDL 617 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL 617 (766)
++||+|+||.||+|...+++.||+|.+...... ...|.+|++++++++||||++++++|.. .+..++||||+++|+|
T Consensus 1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L 79 (250)
T cd05085 1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQ-RQPIYIVMELVPGGDF 79 (250)
T ss_pred CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEec-CCccEEEEECCCCCcH
Confidence 478999999999999888999999998654322 4578999999999999999999998865 5679999999999999
Q ss_pred hhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCc--
Q 004248 618 SSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH-- 695 (766)
Q Consensus 618 ~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~-- 695 (766)
.+++..... .++|.++..++.|++.||.|+|+. +++||||||+||++++++.+||+|||+++.......
T Consensus 80 ~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~ 150 (250)
T cd05085 80 LSFLRKKKD------ELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS 150 (250)
T ss_pred HHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceecccccccc
Confidence 999865432 378999999999999999999987 999999999999999999999999999875432211
Q ss_pred --cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 696 --QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 696 --~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
...++..|+|||....+. ++.++|||||||++||+++ |+.||..
T Consensus 151 ~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~ll~~~~~~g~~p~~~ 197 (250)
T cd05085 151 SGLKQIPIKWTAPEALNYGR---------YSSESDVWSYGILLWETFSLGVCPYPG 197 (250)
T ss_pred CCCCCCcccccCHHHhccCC---------CCchhHHHHHHHHHHHHhcCCCCCCCC
Confidence 122345699999875443 4789999999999999998 9999854
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=278.55 Aligned_cols=188 Identities=17% Similarity=0.271 Sum_probs=157.3
Q ss_pred eeecCCcceEEEEEE---cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 541 LIKNGHSGDLFRGIL---EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~---~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+||+|+||.||+|.. .++..||+|+++..... .+++.+|+.++++++||||+++++++. ++..++||||+++
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~--~~~~~lv~e~~~~ 79 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE--AESWMLVMELAEL 79 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc--CCCcEEEEecCCC
Confidence 689999999999974 45789999998654322 467999999999999999999999774 3468999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~ 694 (766)
|+|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++......
T Consensus 80 ~~L~~~l~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~ 149 (257)
T cd05116 80 GPLNKFLQKNK-------HVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADE 149 (257)
T ss_pred CcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCC
Confidence 99999996543 389999999999999999999987 99999999999999999999999999997653321
Q ss_pred ------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 695 ------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 695 ------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 150 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~t~g~~p~~~~ 202 (257)
T cd05116 150 NYYKAKTHGKWPVKWYAPECMNYYK---------FSSKSDVWSFGVLMWEAFSYGQKPYKGM 202 (257)
T ss_pred CeeeecCCCCCCccccCHhHhccCC---------cCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence 1122346799999775433 4679999999999999998 99999643
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=279.14 Aligned_cols=196 Identities=16% Similarity=0.293 Sum_probs=166.3
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|...++..+|+|.+.......+.|.+|++++++++|+||+++++++.+ ...++||||++
T Consensus 6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~--~~~~~v~e~~~ 83 (260)
T cd05073 6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK--EPIYIITEFMA 83 (260)
T ss_pred cceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC--CCeEEEEEeCC
Confidence 5688899999999999999998778889999987655456789999999999999999999987654 57899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+... ..++|.++..++.|++.||+|||+. +++||||||+||+++.++.+||+|||.++.....
T Consensus 84 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~ 155 (260)
T cd05073 84 KGSLLDFLKSDEG-----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN 155 (260)
T ss_pred CCcHHHHHHhCCc-----cccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCC
Confidence 9999999976432 3489999999999999999999987 9999999999999999999999999998765321
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. ....++..|+|||...... ++.++|||||||++||++| |+.||..
T Consensus 156 ~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~~l~~l~t~g~~p~~~ 206 (260)
T cd05073 156 EYTAREGAKFPIKWTAPEAINFGS---------FTIKSDVWSFGILLMEIVTYGRIPYPG 206 (260)
T ss_pred CcccccCCcccccccCHhHhccCC---------cCccccchHHHHHHHHHHhcCCCCCCC
Confidence 1 1122345699999875433 4789999999999999999 8999854
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=281.44 Aligned_cols=200 Identities=19% Similarity=0.281 Sum_probs=168.5
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|. ..+++.||||.+..... ..+++.+|++++++++||||+++++++.+ ++..++|
T Consensus 2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~~v 80 (267)
T cd08229 2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-DNELNIV 80 (267)
T ss_pred chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEe-CCeEEEE
Confidence 467888999999999999999 46899999998865322 24578999999999999999999998776 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++..... ....++|.++..++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++
T Consensus 81 ~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~ 154 (267)
T cd08229 81 LELADAGDLSRMIKHFKK---QKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR 154 (267)
T ss_pred EEecCCCCHHHHHHHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhh
Confidence 999999999999864321 123589999999999999999999997 99999999999999999999999999987
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....++..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ape~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 209 (267)
T cd08229 155 FFSSKTTAAHSLVGTPYYMSPERIHENG---------YNFKSDIWSLGCLLYEMAALQSPFYGD 209 (267)
T ss_pred ccccCCcccccccCCcCccCHHHhcCCC---------ccchhhHHHHHHHHHHHHhCCCCcccc
Confidence 65322 22346788899999875433 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=278.96 Aligned_cols=195 Identities=20% Similarity=0.324 Sum_probs=166.2
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-------HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-------TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
+|...+.||+|+||.||+|...+|+.+|||.++..... .+.+.+|++++++++|+||+++++++.+ .+..++
T Consensus 1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~l 79 (265)
T cd06631 1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLD-DNTISI 79 (265)
T ss_pred CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeec-CCeEEE
Confidence 46778999999999999999888999999998653211 2468899999999999999999998876 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+|+||||+||++++++.+||+|||++
T Consensus 80 v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~ 149 (265)
T cd06631 80 FMEFVPGGSISSILNRFG-------PLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCA 149 (265)
T ss_pred EEecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhh
Confidence 999999999999997543 378999999999999999999987 8999999999999999999999999998
Q ss_pred hhcCC---------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG---------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~---------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.... ......++..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~~Dv~slG~~~~~l~~g~~p~~~~ 211 (265)
T cd06631 150 RRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESG---------YGRKSDIWSIGCTVFEMATGKPPLASM 211 (265)
T ss_pred HhhhhccccccccccccccCCCccccChhhhcCCC---------CcchhhHHHHHHHHHHHHhCCCccccC
Confidence 75421 112345678899999875443 468999999999999999999999543
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=278.90 Aligned_cols=189 Identities=19% Similarity=0.300 Sum_probs=156.3
Q ss_pred eeecCCcceEEEEEEc---CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCC
Q 004248 541 LIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
.||+|+||.||+|... ++..||+|.+...... .++|.+|++++++++||||+++++++. .+..++||||+++|
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~--~~~~~lv~e~~~~~ 79 (257)
T cd05115 2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE--AEALMLVMEMASGG 79 (257)
T ss_pred ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc--CCCeEEEEEeCCCC
Confidence 3899999999999753 4567999998654332 467999999999999999999999764 34689999999999
Q ss_pred ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCc
Q 004248 616 DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH 695 (766)
Q Consensus 616 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~ 695 (766)
+|.+++.... ..+++.++.+++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++.......
T Consensus 80 ~L~~~l~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~ 150 (257)
T cd05115 80 PLNKFLSGKK------DEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDS 150 (257)
T ss_pred CHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCcc
Confidence 9999987533 2489999999999999999999997 999999999999999999999999999975532211
Q ss_pred ------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 696 ------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 696 ------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
...++..|+|||...... ++.++|||||||++||+++ |+.||...
T Consensus 151 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~~~ 202 (257)
T cd05115 151 YYKARSAGKWPLKWYAPECINFRK---------FSSRSDVWSYGITMWEAFSYGQKPYKKM 202 (257)
T ss_pred ceeccCCCCCCcccCCHHHHccCC---------CCchhhHHHHHHHHHHHhcCCCCCcCcC
Confidence 112245799999875443 4679999999999999996 99999543
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=283.91 Aligned_cols=206 Identities=17% Similarity=0.257 Sum_probs=168.9
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|... +|+.||+|.+..... ..+++.+|++++++++||||+++++.+.. ++..|+|||
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e 79 (286)
T cd06622 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI-EGAVYMCME 79 (286)
T ss_pred ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheec-CCeEEEEEe
Confidence 35788899999999999999964 789999999865322 24579999999999999999999997765 578999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++..... ...+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||+|||+++..
T Consensus 80 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~ 153 (286)
T cd06622 80 YMDAGSLDKLYAGGVA----TEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNL 153 (286)
T ss_pred ecCCCCHHHHHHhccc----cCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9999999998875321 13589999999999999999999963 38999999999999999999999999998765
Q ss_pred CC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......++..|+|||.......+.. ..++.++|||||||++|||+||+.||...
T Consensus 154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~---~~~~~~~DiwslG~il~~l~~g~~pf~~~ 210 (286)
T cd06622 154 VASLAKTNIGCQSYMAPERIKSGGPNQN---PTYTVQSDVWSLGLSILEMALGRYPYPPE 210 (286)
T ss_pred cCCccccCCCccCccCcchhcCCCCCcc---CCCCcccchHhHHHHHHHHHhCCCCCCCc
Confidence 32 2333456788999998754332100 11578999999999999999999999543
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=279.84 Aligned_cols=198 Identities=21% Similarity=0.366 Sum_probs=169.2
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++|...++||+|+||.||+|..++++.||||.+.......+++.+|++++++++||||+++++++.. +...++||||+
T Consensus 5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~~ 83 (261)
T cd05034 5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE-EEPIYIVTEYM 83 (261)
T ss_pred hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeec-CCceEEEEecc
Confidence 35688889999999999999998888899999998666667789999999999999999999997754 56799999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++.+... ..+++.++..++.|++.|++|||+. +|+||||||+||++++++.+|++|||.++....
T Consensus 84 ~~~~L~~~i~~~~~-----~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~ 155 (261)
T cd05034 84 SKGSLLDFLKSGEG-----KKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIED 155 (261)
T ss_pred CCCCHHHHHhcccc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccc
Confidence 99999999976432 3489999999999999999999997 899999999999999999999999999876532
Q ss_pred CC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 693 DA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 693 ~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.. .....+..|+|||...... ++.++||||+||++|||+| |+.||..
T Consensus 156 ~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~il~~l~t~g~~p~~~ 207 (261)
T cd05034 156 DEYTAREGAKFPIKWTAPEAANYGR---------FTIKSDVWSFGILLTEIVTYGRVPYPG 207 (261)
T ss_pred hhhhhhhccCCCccccCHHHhccCC---------cCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 21 1122345799999775443 4789999999999999999 9999854
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=283.29 Aligned_cols=194 Identities=21% Similarity=0.351 Sum_probs=162.1
Q ss_pred CCCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~ 606 (766)
.|+..+.||+|+||.||+|+. .++..||+|.++..... .+.+.+|++++++++||||+++++++... ....+
T Consensus 5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (284)
T cd05079 5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK 84 (284)
T ss_pred hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence 467889999999999999973 35789999998654322 45799999999999999999999987653 24689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++.+.. ..++|.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 85 lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~ 155 (284)
T cd05079 85 LIMEFLPSGSLKEYLPRNK------NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGL 155 (284)
T ss_pred EEEEccCCCCHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCcc
Confidence 9999999999999996542 2489999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 687 VCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 687 a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
++...... ....++..|+|||...... ++.++|||||||++|||+|++.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Di~slG~il~ellt~~~~~ 212 (284)
T cd05079 156 TKAIETDKEYYTVKDDLDSPVFWYAPECLIQSK---------FYIASDVWSFGVTLYELLTYCDSE 212 (284)
T ss_pred ccccccCccceeecCCCCCCccccCHHHhccCC---------CCccccchhhhhhhhhhhcCCCCC
Confidence 98653221 1233456799999775433 478999999999999999988765
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=278.77 Aligned_cols=200 Identities=20% Similarity=0.262 Sum_probs=168.8
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|... +|+.||+|.++.... ..+++.+|++++++++|+||+++++++.. ++..++|
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~-~~~~~lv 80 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIE-NNELNIV 80 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeec-CCeEEEE
Confidence 57889999999999999999964 899999998864221 25679999999999999999999998766 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++..... ....+++.++..++.|+++||+|||+. +|+||||||+||++++++.+||+|||+++
T Consensus 81 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~ 154 (267)
T cd08224 81 LELADAGDLSRMIKHFKK---QKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGR 154 (267)
T ss_pred EecCCCCCHHHHHHHhcc---cCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceee
Confidence 999999999999864321 123589999999999999999999997 99999999999999999999999999987
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....++..|.|||...... ++.++|||||||++|||++|+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 209 (267)
T cd08224 155 FFSSKTTAAHSLVGTPYYMSPERIHENG---------YNFKSDIWSLGCLLYEMAALQSPFYGD 209 (267)
T ss_pred eccCCCcccceecCCccccCHHHhccCC---------CCchhcHHHHHHHHHHHHHCCCCcccC
Confidence 65322 22345678899999875433 478999999999999999999998544
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=286.53 Aligned_cols=198 Identities=21% Similarity=0.279 Sum_probs=164.7
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|...+.||+|+||.||+|.. .++..||||.++..... .+.+.+|+++++++ +||||+++++++.. .+.
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~~~ 113 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTI-GGP 113 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEec-CCc
Confidence 4688889999999999999973 23568999998654322 45799999999999 79999999998765 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+||||+++|+|.+++++... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|++||
T Consensus 114 ~~lv~e~~~~~~L~~~i~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~df 185 (302)
T cd05055 114 ILVITEYCCYGDLLNFLRRKRE-----SFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDF 185 (302)
T ss_pred eEEEEEcCCCCcHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCC
Confidence 9999999999999999975432 2389999999999999999999987 9999999999999999999999999
Q ss_pred hhhhhcCCCCc-----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 685 SEVCAQGGDAH-----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|+++....... ...++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 186 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwslGvil~el~t~g~~p~~~~ 247 (302)
T cd05055 186 GLARDIMNDSNYVVKGNARLPVKWMAPESIFNCV---------YTFESDVWSYGILLWEIFSLGSNPYPGM 247 (302)
T ss_pred cccccccCCCceeecCCCCcccccCCHhhhccCC---------CCcHhHHHHHHHHHHHHHhCCCCCcCCC
Confidence 99976532211 123456799999875443 4789999999999999998 99998543
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=284.86 Aligned_cols=197 Identities=18% Similarity=0.233 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||+||+|.. ++|+.||+|.+...... .+++.+|++++++++||||+++++++.. .+..++|||
T Consensus 5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 83 (284)
T cd06620 5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLN-ENNICMCME 83 (284)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEec-CCEEEEEEe
Confidence 4577789999999999999984 57899999988654322 5689999999999999999999998876 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+.+ .+++.....++.+++.||.|||+. .+|+||||||+||++++++.++|+|||++...
T Consensus 84 ~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~ 154 (284)
T cd06620 84 FMDCGSLDRIYKKGG-------PIPVEILGKIAVAVVEGLTYLYNV--HRIMHRDIKPSNILVNSRGQIKLCDFGVSGEL 154 (284)
T ss_pred cCCCCCHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHh--cCeeccCCCHHHEEECCCCcEEEccCCcccch
Confidence 999999999987543 389999999999999999999963 27999999999999999999999999998654
Q ss_pred CC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......++..|+|||.+.... .+.++|||||||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~~~~~aPE~~~~~~---------~~~~~Di~slG~~l~~l~tg~~p~~~~ 205 (284)
T cd06620 155 INSIADTFVGTSTYMSPERIQGGK---------YTVKSDVWSLGISIIELALGKFPFAFS 205 (284)
T ss_pred hhhccCccccCcccCCHHHHccCC---------CCccchHHHHHHHHHHHHhCCCCCccc
Confidence 22 223346788999999875443 478999999999999999999999643
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=279.21 Aligned_cols=190 Identities=22% Similarity=0.289 Sum_probs=155.3
Q ss_pred ceeecCCcceEEEEEEcC-------------CcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 540 NLIKNGHSGDLFRGILEG-------------GIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~-------------g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
+.||+|+||.||+|+..+ ...||+|.+...... ...|.+|+.++++++|||||++++++.. +...
T Consensus 1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~-~~~~ 79 (262)
T cd05077 1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVR-DVEN 79 (262)
T ss_pred CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCCC
Confidence 468999999999998532 236899987654333 4578999999999999999999998876 4678
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc-------
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE------- 678 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~------- 678 (766)
++||||+++|+|..+++++. ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 80 ~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~ 150 (262)
T cd05077 80 IMVEEFVEFGPLDLFMHRKS------DVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPF 150 (262)
T ss_pred EEEEecccCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCce
Confidence 99999999999999887543 2489999999999999999999997 9999999999999987664
Q ss_pred EEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh-cCCCCCCC
Q 004248 679 VRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI-FNNHLNLS 748 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell-tG~~p~~~ 748 (766)
+|++|||++...... ....++..|+|||....... ++.++|||||||++|||+ +|+.|+..
T Consensus 151 ~~l~d~g~~~~~~~~-~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~~l~el~~~~~~p~~~ 212 (262)
T cd05077 151 IKLSDPGIPITVLSR-QECVERIPWIAPECVEDSKN--------LSIAADKWSFGTTLWEICYNGEIPLKD 212 (262)
T ss_pred eEeCCCCCCccccCc-ccccccccccChhhhcCCCC--------CCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 899999998755322 23346778999997753221 578999999999999998 58888754
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=276.73 Aligned_cols=197 Identities=19% Similarity=0.248 Sum_probs=168.1
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..++||+|+||.||.++ ..+++.||+|++..... ..+++.+|++++++++|+||+++++++.+ ++..++|||
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~~~~e 79 (256)
T cd08221 1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMD-DNTLLIEME 79 (256)
T ss_pred CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEec-CCeEEEEEE
Confidence 47888999999999999998 46789999999865432 24678999999999999999999998776 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+... ..+++.++..++.|++.||+|||+. +++||||||+||++++++.+||+|||+++..
T Consensus 80 ~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~ 151 (256)
T cd08221 80 YANGGTLYDKIVRQKG-----QLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKIL 151 (256)
T ss_pred ecCCCcHHHHHHhccc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEc
Confidence 9999999999975432 3489999999999999999999987 9999999999999999999999999998765
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....++..|.|||...... .+.++|||||||+++||++|+.||...
T Consensus 152 ~~~~~~~~~~~~~~~y~ape~~~~~~---------~~~~~Dv~slG~i~~~l~~g~~~~~~~ 204 (256)
T cd08221 152 GSEYSMAETVVGTPYYMSPELCQGVK---------YNFKSDIWALGCVLYELLTLKRTFDAT 204 (256)
T ss_pred ccccccccccCCCccccCHhhcCCCC---------CCCcchhHHHHHHHHHHHHCCCCCCCC
Confidence 322 23345788999999875443 467899999999999999999998543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=282.97 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=163.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHH-HhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDF-FSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~-l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+. .+|+.||+|+++..... ..++..|+.+ ++..+|||||++++++.. ++..|+||
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~-~~~~~lv~ 79 (283)
T cd06617 1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFR-EGDVWICM 79 (283)
T ss_pred CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEec-CCcEEEEh
Confidence 4788899999999999999995 56999999999764322 3456677775 566789999999998875 56799999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++ |+|.+++..... ....++|..+..++.|++.||+|||++ .+++||||||+||+++.++.+||+|||+++.
T Consensus 80 e~~~-~~l~~~l~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~--~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~ 153 (283)
T cd06617 80 EVMD-TSLDKFYKKVYD---KGLTIPEDILGKIAVSIVKALEYLHSK--LSVIHRDVKPSNVLINRNGQVKLCDFGISGY 153 (283)
T ss_pred hhhc-ccHHHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence 9997 689888865322 113589999999999999999999974 3799999999999999999999999999876
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||....... ... ++.++|||||||++|||++|+.||..
T Consensus 154 ~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~----~~~~~Di~slG~~l~~l~~g~~p~~~ 209 (283)
T cd06617 154 LVDSVAKTIDAGCKPYMAPERINPELN-QKG----YDVKSDVWSLGITMIELATGRFPYDS 209 (283)
T ss_pred cccccccccccCCccccChhhcCCccc-ccc----cCccccchhhHHHHHHHHhCCCCCCc
Confidence 5322 122457888999998754221 111 57899999999999999999999964
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=282.33 Aligned_cols=196 Identities=19% Similarity=0.317 Sum_probs=162.4
Q ss_pred CCCCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~ 606 (766)
++|+..+.||+|+||.||+|.. .++..||+|++...... .+.|.+|++++++++||||+++++++... ....+
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 83 (284)
T cd05081 4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR 83 (284)
T ss_pred ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence 4678889999999999999974 35789999998654433 56789999999999999999999977543 34689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++.+.+ ..++|.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+
T Consensus 84 lv~e~~~~~~L~~~l~~~~------~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~ 154 (284)
T cd05081 84 LVMEYLPYGSLRDYLQKHR------ERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGL 154 (284)
T ss_pred EEEEecCCCCHHHHHHhcC------cCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCcc
Confidence 9999999999999997543 2489999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCCc------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 687 VCAQGGDAH------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 687 a~~~~~~~~------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++....... ...++..|+|||...... ++.++|||||||++|||++|..|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~~~~~~ 212 (284)
T cd05081 155 TKVLPQDKEYYKVREPGESPIFWYAPESLTESK---------FSVASDVWSFGVVLYELFTYSDKSC 212 (284)
T ss_pred cccccCCCcceeecCCCCCceEeeCHHHhccCC---------cChHHHHHHHHHHHHHHhhcCCcCC
Confidence 986532211 112234689999875443 4689999999999999999987753
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=296.82 Aligned_cols=202 Identities=19% Similarity=0.295 Sum_probs=164.7
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcC-CCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS-HARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~ 604 (766)
++|...+.||+|+||.||+|+.. .++.||||+++..... .+.+.+|+++|.++. |||||+++++|.. ++.
T Consensus 37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~-~~~ 115 (401)
T cd05107 37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTK-GGP 115 (401)
T ss_pred HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc-CCC
Confidence 45777899999999999999853 3468999999754322 457899999999997 9999999998865 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCC---------------------------------------------------------
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT--------------------------------------------------------- 627 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~--------------------------------------------------------- 627 (766)
.++||||+++|+|.+++++.+..
T Consensus 116 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (401)
T cd05107 116 IYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDM 195 (401)
T ss_pred cEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcc
Confidence 99999999999999999754210
Q ss_pred ----------------------------------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 628 ----------------------------------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 628 ----------------------------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
......++|.+...|+.|++.||+|||+. +|+||||||+|||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~NiLl 272 (401)
T cd05107 196 KGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNVLI 272 (401)
T ss_pred hhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceEEE
Confidence 01123578999999999999999999987 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
++++.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||++ |+.||.
T Consensus 273 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslGvil~e~l~~g~~P~~ 343 (401)
T cd05107 273 CEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNL---------YTTLSDVWSFGILLWEIFTLGGTPYP 343 (401)
T ss_pred eCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCC---------CCcHhHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999764211 11224567799999875543 4679999999999999998 888985
Q ss_pred C
Q 004248 748 S 748 (766)
Q Consensus 748 ~ 748 (766)
.
T Consensus 344 ~ 344 (401)
T cd05107 344 E 344 (401)
T ss_pred C
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-34 Score=275.86 Aligned_cols=212 Identities=19% Similarity=0.293 Sum_probs=175.9
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-------C
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-------E 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-------~ 602 (766)
+.|+...+||+|.||+||+|+ ..+|++||+|++-....+ ...-.+|+++|..++|+|++.++..|... .
T Consensus 17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r 96 (376)
T KOG0669|consen 17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR 96 (376)
T ss_pred hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence 346667899999999999998 667889999987543222 45678999999999999999999988532 1
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...|+||++|+. ||..+|.... ..++..++++++.++..||.|+|+. .|+|||+||+|+||+.+|.+||+
T Consensus 97 ~t~ylVf~~ceh-DLaGlLsn~~------vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklA 166 (376)
T KOG0669|consen 97 ATFYLVFDFCEH-DLAGLLSNRK------VRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLA 166 (376)
T ss_pred ceeeeeHHHhhh-hHHHHhcCcc------ccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEee
Confidence 248999999996 9999986442 3589999999999999999999998 99999999999999999999999
Q ss_pred cchhhhhc-------CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcccccc
Q 004248 683 SLSEVCAQ-------GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQ 755 (766)
Q Consensus 683 DFG~a~~~-------~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~ 755 (766)
|||+|+.. ....+..+.|.+|++||.+.+... ++++.|||.-|||+.||.||. |...++.+.++
T Consensus 167 DFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~--------yg~~iDiWgAgCimaeMwtrs-pimqgnteqqq 237 (376)
T KOG0669|consen 167 DFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDRE--------YGPPIDIWGAGCIMAEMWTRS-PIMQGNTEQQQ 237 (376)
T ss_pred ccccccceecccccCCCCcccceeeeecCCHHHhhcccc--------cCCcchhHhHHHHHHHHHccC-ccccCChHHHH
Confidence 99999765 223455678999999998876543 678999999999999999987 56667777777
Q ss_pred ceeeEEEEe
Q 004248 756 QTTIIKLCV 764 (766)
Q Consensus 756 ~~~~~~~~~ 764 (766)
+..|.++|.
T Consensus 238 l~~Is~LcG 246 (376)
T KOG0669|consen 238 LHLISQLCG 246 (376)
T ss_pred HHHHHHHhc
Confidence 777766653
|
|
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=282.03 Aligned_cols=190 Identities=21% Similarity=0.270 Sum_probs=154.3
Q ss_pred eeecCCcceEEEEEEcC-------------------------CcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccc
Q 004248 541 LIKNGHSGDLFRGILEG-------------------------GIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPL 594 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~~~-------------------------g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l 594 (766)
.||+|+||.||+|.... ...||+|.+...... .++|.+|++++++++||||+++
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~ 81 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV 81 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence 58999999999997421 135899988654333 4578999999999999999999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~ 674 (766)
+++|.+ +...++||||+++|+|..++.+.. ..+++..+..++.|+++||+|||+. +|+||||||+||+++
T Consensus 82 ~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~ 151 (274)
T cd05076 82 HGVCVR-GSENIMVEEFVEHGPLDVCLRKEK------GRVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLA 151 (274)
T ss_pred EEEEEe-CCceEEEEecCCCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEe
Confidence 998876 567899999999999999986533 2488999999999999999999987 999999999999998
Q ss_pred CCC-------cEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh-cCCCCC
Q 004248 675 DKF-------EVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI-FNNHLN 746 (766)
Q Consensus 675 ~~~-------~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell-tG~~p~ 746 (766)
+++ .+|++|||.+...... ....++..|+|||.+..... ++.++|||||||++|||+ +|+.||
T Consensus 152 ~~~~~~~~~~~~kl~d~g~~~~~~~~-~~~~~~~~~~aPe~~~~~~~--------~~~~~Dv~slG~~l~el~~~g~~p~ 222 (274)
T cd05076 152 RLGLAEGTSPFIKLSDPGVSFTALSR-EERVERIPWIAPECVPGGNS--------LSTAADKWSFGTTLLEICFDGEVPL 222 (274)
T ss_pred ccCcccCccceeeecCCccccccccc-cccccCCcccCchhhcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCc
Confidence 654 3899999988654222 22345678999998754321 578999999999999994 799998
Q ss_pred CCC
Q 004248 747 LSS 749 (766)
Q Consensus 747 ~~~ 749 (766)
...
T Consensus 223 ~~~ 225 (274)
T cd05076 223 KER 225 (274)
T ss_pred ccc
Confidence 543
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=281.82 Aligned_cols=205 Identities=20% Similarity=0.297 Sum_probs=168.7
Q ss_pred hCCCCccceeecCCcceEEEEEEcC-----CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEG-----GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
.++|...++||+|+||.||+|.... +..||+|++..... ..+.+.+|+.++++++||||+++++++...+...
T Consensus 5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 84 (280)
T cd05043 5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP 84 (280)
T ss_pred hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence 3568888999999999999999654 78899999864322 2567899999999999999999999887755678
Q ss_pred EEEEeeCCCCChhhhhhccCCC-CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNT-EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~-~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
++++||+++|+|.+++...... ......+++.++..++.|++.||+|||+. +++||||||+||++++++.+||+||
T Consensus 85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d~ 161 (280)
T cd05043 85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDN 161 (280)
T ss_pred EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECCC
Confidence 9999999999999999754321 11224589999999999999999999987 9999999999999999999999999
Q ss_pred hhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 685 SEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|+++...... ....++..|+|||...... ++.++|||||||++||+++ |+.||...
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~~~ 223 (280)
T cd05043 162 ALSRDLFPMDYHCLGDNENRPVKWMALESLVNKE---------YSSASDVWSFGVLLWELMTLGQTPYVEI 223 (280)
T ss_pred CCcccccCCceEEeCCCCCcchhccCHHHHhcCC---------CCchhhHHHhHHHHHHHhcCCCCCcCcC
Confidence 9998652211 1223456799999875433 4789999999999999999 99999643
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=279.95 Aligned_cols=197 Identities=21% Similarity=0.377 Sum_probs=163.0
Q ss_pred CCCCccceeecCCcceEEEEEEc-CC---cEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GG---IPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|+.. ++ ..||+|+++.... ..+++.+|++++++++||||+++++++.. .+..|+
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~l 83 (268)
T cd05063 5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTK-FKPAMI 83 (268)
T ss_pred HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEcc-CCCcEE
Confidence 46778899999999999999954 33 3799999865432 25679999999999999999999997765 567899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++..+.. .++|.++..++.|++.|++|||+. +|+||||||+||++++++.+|++|||++
T Consensus 84 v~e~~~~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~ 154 (268)
T cd05063 84 ITEYMENGALDKYLRDHDG------EFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLS 154 (268)
T ss_pred EEEcCCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccc
Confidence 9999999999999975432 489999999999999999999987 9999999999999999999999999998
Q ss_pred hhcCCCCcc------ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGDAHQ------SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~~~------~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+........ ...+..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Dv~slG~il~ell~~g~~p~~~~ 214 (268)
T cd05063 155 RVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRK---------FTSASDVWSFGIVMWEVMSFGERPYWDM 214 (268)
T ss_pred eecccccccceeccCCCcCceecCHHHhhcCC---------cChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence 765322111 11234699999875443 4789999999999999998 99999543
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=284.39 Aligned_cols=204 Identities=19% Similarity=0.270 Sum_probs=164.4
Q ss_pred HhCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
..++|+..++||+|+||.||+|... .+..||+|.+...... ..++.+|++++++++||||+++++++.+ .+
T Consensus 4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~ 82 (288)
T cd05061 4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSK-GQ 82 (288)
T ss_pred cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcC-CC
Confidence 3567889999999999999999742 2558999988644322 3468899999999999999999997765 46
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCC---CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTE---DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
..|+||||+++|+|.+++.+..... ......++..+..++.|++.||+|||+. +|+||||||+||++++++.+|
T Consensus 83 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~ 159 (288)
T cd05061 83 PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVK 159 (288)
T ss_pred CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEE
Confidence 7899999999999999997533211 1123467888999999999999999987 999999999999999999999
Q ss_pred eccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 681 LGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 681 l~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
++|||+++...... ....++..|+|||....+. ++.++|||||||++|||++ |+.||..
T Consensus 160 L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~---------~~~~~DvwslG~~l~el~~~~~~p~~~ 224 (288)
T cd05061 160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV---------FTTSSDMWSFGVVLWEITSLAEQPYQG 224 (288)
T ss_pred ECcCCccccccccccccccCCCcccccccCHHHhccCC---------CChHhHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999987542211 1123355799999876443 4789999999999999999 7888854
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=276.31 Aligned_cols=200 Identities=20% Similarity=0.258 Sum_probs=169.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||.||+|.. .+++.+|+|.+..... ..+.+.+|++++++++||||+++++++.. ++..|++|||
T Consensus 3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~l~~e~ 81 (262)
T cd06613 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLR-RDKLWIVMEY 81 (262)
T ss_pred cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEe-CCEEEEEEeC
Confidence 5788899999999999999985 5688999999875443 35679999999999999999999997765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++++|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.+....
T Consensus 82 ~~~~~l~~~~~~~~------~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~ 152 (262)
T cd06613 82 CGGGSLQDIYQVTR------GPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLT 152 (262)
T ss_pred CCCCcHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhh
Confidence 99999999987542 2489999999999999999999987 99999999999999999999999999987653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|+|||.......+. ++.++|||||||++|||+||+.||...
T Consensus 153 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~------~~~~~Di~slG~~l~~~~tg~~p~~~~ 207 (262)
T cd06613 153 ATIAKRKSFIGTPYWMAPEVAAVERKGG------YDGKCDIWALGITAIELAELQPPMFDL 207 (262)
T ss_pred hhhhccccccCCccccCchhhcccccCC------cCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence 22 23345677899999876542111 578999999999999999999999643
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=284.75 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=165.2
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..++||+|+||.||+|... +++.||+|++..... ..+.+.+|++++++++||||+++++++.. ++..|+||
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~ 79 (286)
T cd07846 1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-KKRLYLVF 79 (286)
T ss_pred CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-CCeEEEEE
Confidence 46888899999999999999964 689999998854332 24578899999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|.++..... .++|.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++.
T Consensus 80 e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~ 149 (286)
T cd07846 80 EFVDHTVLDDLEKYPN-------GLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFART 149 (286)
T ss_pred ecCCccHHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeee
Confidence 9999999988775432 389999999999999999999997 999999999999999999999999999876
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||....... ++.++|||||||++|||+||++||..
T Consensus 150 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~~l~el~~g~~~~~~ 203 (286)
T cd07846 150 LAAPGEVYTDYVATRWYRAPELLVGDTK--------YGRAVDIWAVGCLVTEMLTGEPLFPG 203 (286)
T ss_pred ccCCccccCcccceeeccCcHHhccccc--------cCchHhHHHHHHHHHHHHcCCCCCCC
Confidence 5322 223457889999998754221 46799999999999999999988853
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=277.79 Aligned_cols=197 Identities=20% Similarity=0.269 Sum_probs=164.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc------CHHHHHHHHHHHhhcCCCCcccceeEEEec-CCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV------KTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~ 605 (766)
.+|+..+.||+|+||.||+|.. .+++.||+|++..... ..+.+.+|++++++++||||+++++++... ++..
T Consensus 2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (266)
T cd06651 2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL 81 (266)
T ss_pred CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence 3688899999999999999985 5689999999864321 134688999999999999999999976542 3467
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++++||+++++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 82 ~l~~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg 151 (266)
T cd06651 82 TIFMEYMPGGSVKDQLKAYG-------ALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFG 151 (266)
T ss_pred EEEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCC
Confidence 89999999999999997543 388999999999999999999987 99999999999999999999999999
Q ss_pred hhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....++..|+|||...... .+.++|||||||++|||+||+.||...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~i~~el~~g~~pf~~~ 212 (266)
T cd06651 152 ASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEG---------YGRKADVWSLGCTVVEMLTEKPPWAEY 212 (266)
T ss_pred CccccccccccCCccccCCccccccCHHHhCCCC---------CCchhhhHHHHHHHHHHHHCCCCcccc
Confidence 98754221 12234677899999875443 468999999999999999999999543
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-32 Score=280.79 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=166.9
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
.+|....+||+|+||+|..|..+ +.+.+|||+++++-.- .+--..|-++|+-. +-|.+|+++. |+++.+.+|+
T Consensus 349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHS-cFQTmDRLyF 427 (683)
T KOG0696|consen 349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHS-CFQTMDRLYF 427 (683)
T ss_pred cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHH-Hhhhhhheee
Confidence 36888999999999999999854 5778999999765432 22234566777655 5789999997 6666788999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+.||||.-+|++.+. +.++..+.+|.+||-||-|||++ +||.||||..||++|.+|++||+|||++
T Consensus 428 VMEyvnGGDLMyhiQQ~Gk-------FKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmc 497 (683)
T KOG0696|consen 428 VMEYVNGGDLMYHIQQVGK-------FKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMC 497 (683)
T ss_pred EEEEecCchhhhHHHHhcc-------cCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecccc
Confidence 9999999999999987654 88889999999999999999998 9999999999999999999999999999
Q ss_pred hhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.. +..+.+.+||+.|+|||++....| +..+|+|||||+||||+.|++||+.+
T Consensus 498 KEni~~~~TTkTFCGTPdYiAPEIi~YqPY---------gksvDWWa~GVLLyEmlaGQpPFdGe 553 (683)
T KOG0696|consen 498 KENIFDGVTTKTFCGTPDYIAPEIIAYQPY---------GKSVDWWAFGVLLYEMLAGQPPFDGE 553 (683)
T ss_pred cccccCCcceeeecCCCcccccceEEeccc---------ccchhHHHHHHHHHHHHcCCCCCCCC
Confidence 864 345667899999999999877665 46789999999999999999999643
|
|
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=277.90 Aligned_cols=190 Identities=23% Similarity=0.361 Sum_probs=155.2
Q ss_pred ceeecCCcceEEEEEEc----CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.||+|+||.||+|... ++..||+|++..... ..+.+.+|+.++++++||||+++++++...++..++||||++
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~ 80 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK 80 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence 46899999999999843 246899999854322 246788999999999999999999988755566899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+... ..++..+..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++.....
T Consensus 81 ~~~L~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~ 151 (262)
T cd05058 81 HGDLRNFIRSETH------NPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDK 151 (262)
T ss_pred CCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCC
Confidence 9999999975432 367888899999999999999987 9999999999999999999999999999754321
Q ss_pred C-------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcC-CCCCC
Q 004248 694 A-------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN-NHLNL 747 (766)
Q Consensus 694 ~-------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG-~~p~~ 747 (766)
. ....++..|+|||...... ++.++|||||||++|||+|| .+||.
T Consensus 152 ~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~~~~~~~ 204 (262)
T cd05058 152 EYYSVHNHTGAKLPVKWMALESLQTQK---------FTTKSDVWSFGVLLWELMTRGAPPYP 204 (262)
T ss_pred cceeecccccCcCCccccChhHhccCc---------cchHHHHHHHHHHHHHHHcCCCCCCC
Confidence 1 1223456799999875433 47899999999999999996 44553
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=281.76 Aligned_cols=190 Identities=21% Similarity=0.210 Sum_probs=155.1
Q ss_pred eeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHh---hcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 541 LIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFS---KVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~---~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
+||+|+||.||++.. .+++.||+|.+...... ...+.+|..+++ ..+||||+.+++++.. ++..++||||+
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~lv~e~~ 79 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHT-PDKLCFILDLM 79 (279)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEec-CCeEEEEEecC
Confidence 489999999999995 56899999998654322 223455554433 3479999999887765 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++..++ .++|.+...++.|++.||+|||+. +|+||||||+||++++++.+|++|||++.....
T Consensus 80 ~~~~L~~~i~~~~-------~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~ 149 (279)
T cd05633 80 NGGDLHYHLSQHG-------VFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK 149 (279)
T ss_pred CCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccc
Confidence 9999999987543 389999999999999999999997 899999999999999999999999999875532
Q ss_pred -CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 -DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 -~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
......++..|+|||....+.. ++.++||||+||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~~l~~l~~g~~pf~~~ 199 (279)
T cd05633 150 KKPHASVGTHGYMAPEVLQKGTA--------YDSSADWFSLGCMLFKLLRGHSPFRQH 199 (279)
T ss_pred cCccCcCCCcCccCHHHhcCCCC--------CCchhhhHHHHHHHHHHHhCCCCcCCC
Confidence 2233468899999998753221 478999999999999999999999543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=278.58 Aligned_cols=197 Identities=20% Similarity=0.335 Sum_probs=163.4
Q ss_pred CCCCccceeecCCcceEEEEEEc-C---CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-G---GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~---g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|... + +..||+|.++.... ..+.|.+|+.++++++||||+++++++.. ++..++
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~l 82 (267)
T cd05066 4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-SKPVMI 82 (267)
T ss_pred HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CCccEE
Confidence 46778899999999999999853 2 34799999865432 24679999999999999999999997765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+... .+++.++..++.|++.|++|||+. +++||||||+||+++.++.+|++|||++
T Consensus 83 v~e~~~~~~L~~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~ 153 (267)
T cd05066 83 VTEYMENGSLDAFLRKHDG------QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLS 153 (267)
T ss_pred EEEcCCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcc
Confidence 9999999999999975432 489999999999999999999997 9999999999999999999999999999
Q ss_pred hhcCCCCc------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGDAH------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~~------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+....... ....+..|++||...... ++.++|||||||++||+++ |+.||...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~---------~~~~~Dv~slG~~l~ell~~g~~p~~~~ 213 (267)
T cd05066 154 RVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRK---------FTSASDVWSYGIVMWEVMSYGERPYWEM 213 (267)
T ss_pred cccccccceeeecCCCccceeecCHhHhccCc---------cCchhhhHHHHHHHHHHhcCCCCCcccC
Confidence 86532211 112245799999876443 4789999999999999886 99998543
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=276.82 Aligned_cols=196 Identities=21% Similarity=0.346 Sum_probs=164.1
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|...+.||+|+||.||+|.. +++.||+|.++... ..+.+.+|+.++++++||||+++++++.. +..++||||++
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--~~~~~v~e~~~ 81 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV-TAQAFLEETAVMTKLHHKNLVRLLGVILH--NGLYIVMELMS 81 (254)
T ss_pred HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc-hHHHHHHHHHHHHhCCCCCcCeEEEEEcC--CCcEEEEECCC
Confidence 3578889999999999999874 57789999986432 35679999999999999999999997754 45799999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... ..+++.++..++.|++.|++|||+. +++||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~ 153 (254)
T cd05083 82 KGNLVNFLRTRGR-----ALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG 153 (254)
T ss_pred CCCHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceecccc
Confidence 9999999975432 3489999999999999999999987 9999999999999999999999999998765333
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
......+..|+|||....+. ++.++|||||||++|||++ |+.||...+
T Consensus 154 ~~~~~~~~~y~~pe~~~~~~---------~~~~~Dv~slG~~l~el~~~g~~p~~~~~ 202 (254)
T cd05083 154 VDNSKLPVKWTAPEALKHKK---------FSSKSDVWSYGVLLWEVFSYGRAPYPKMS 202 (254)
T ss_pred CCCCCCCceecCHHHhccCC---------cCchhhHHHHHHHHHHHHhCCCCCCccCC
Confidence 23333456799999775443 4789999999999999998 999985443
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=283.21 Aligned_cols=194 Identities=19% Similarity=0.263 Sum_probs=163.5
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC------HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK------TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
+|+..+.||+|+||.||+|.. .+|+.||||+++..... ...+.+|++++++++|+||+++++++.+ ++..++
T Consensus 1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~l 79 (298)
T cd07841 1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH-KSNINL 79 (298)
T ss_pred CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-CCEEEE
Confidence 377788999999999999995 56899999999754332 3457789999999999999999998876 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+ +|+|.+++.... ..+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 80 v~e~~-~~~L~~~i~~~~------~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~ 149 (298)
T cd07841 80 VFEFM-ETDLEKVIKDKS------IVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLA 149 (298)
T ss_pred EEccc-CCCHHHHHhccC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceee
Confidence 99999 899999997543 1489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 688 CAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 688 ~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+..... .....++..|+|||....... ++.++|||||||++|||++|++||.
T Consensus 150 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~il~e~~~g~~~~~ 204 (298)
T cd07841 150 RSFGSPNRKMTHQVVTRWYRAPELLFGARH--------YGVGVDMWSVGCIFAELLLRVPFLP 204 (298)
T ss_pred eeccCCCccccccccceeeeCHHHHhCCCC--------CCcHHHHHHHHHHHHHHHcCCcccc
Confidence 765322 223345778999997643221 4789999999999999999977664
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=282.50 Aligned_cols=201 Identities=19% Similarity=0.236 Sum_probs=162.7
Q ss_pred CCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
+|+..+.||+|+||.||+|... +++.||||+++..... .+.|.+|++++++++|||||++++++.. .+..+
T Consensus 6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-~~~~~ 84 (283)
T cd05091 6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK-EQPLS 84 (283)
T ss_pred HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CCceE
Confidence 3566789999999999999853 2578999999754332 4678999999999999999999998765 46789
Q ss_pred EEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 607 LVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
+++||+++++|.+++...... ......+++..+..++.|++.||+|||+. +|+||||||+||++++++
T Consensus 85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~ 161 (283)
T cd05091 85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKL 161 (283)
T ss_pred EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCC
Confidence 999999999999998532110 01123589999999999999999999987 999999999999999999
Q ss_pred cEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 678 EVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.+||+|||+++..... .....++..|+|||....+. ++.++|||||||++|||+| |..||..
T Consensus 162 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~~l~el~~~g~~p~~~ 229 (283)
T cd05091 162 NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGK---------FSIDSDIWSYGVVLWEVFSYGLQPYCG 229 (283)
T ss_pred ceEecccccccccccchheeeccCccCCccccCHHHHhcCC---------CCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence 9999999998765221 11223456899999875443 4689999999999999998 8888854
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=282.42 Aligned_cols=201 Identities=18% Similarity=0.271 Sum_probs=162.5
Q ss_pred CCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
+|+..+.||+|+||.||+|+.. +...||+|.+...... .+++.+|++++++++||||+++++.|.. ++..+
T Consensus 1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~ 79 (290)
T cd05045 1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQ-DGPLL 79 (290)
T ss_pred CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEec-CCCcE
Confidence 4677899999999999999842 2357899888644322 4578999999999999999999997765 56789
Q ss_pred EEEeeCCCCChhhhhhccCCC-----------------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCC
Q 004248 607 LVYKYMPNGDLSSSLYRKTNT-----------------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQAS 669 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~-----------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~ 669 (766)
+|+||+++|+|.+++...... ......++|.++..++.|++.||+|||+. +|+||||||+
T Consensus 80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~ 156 (290)
T cd05045 80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAAR 156 (290)
T ss_pred EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Ceehhhhhhh
Confidence 999999999999998653210 01123589999999999999999999987 9999999999
Q ss_pred CeeeCCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CC
Q 004248 670 SILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NN 743 (766)
Q Consensus 670 NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~ 743 (766)
||++++++.+||+|||+++..... .....++..|+|||...... ++.++|||||||+++||+| |+
T Consensus 157 nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Di~slG~~l~el~t~g~ 227 (290)
T cd05045 157 NVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHI---------YTTQSDVWSFGVLLWEIVTLGG 227 (290)
T ss_pred eEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCC---------cchHhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999754221 11223456799999765433 4789999999999999999 99
Q ss_pred CCCCC
Q 004248 744 HLNLS 748 (766)
Q Consensus 744 ~p~~~ 748 (766)
.||..
T Consensus 228 ~p~~~ 232 (290)
T cd05045 228 NPYPG 232 (290)
T ss_pred CCCCC
Confidence 99854
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=279.91 Aligned_cols=207 Identities=18% Similarity=0.217 Sum_probs=171.7
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecC-----Cc
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERE-----NE 604 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~-----~~ 604 (766)
++++|+..+.||+|+||.||+|.. .+++.+|+|.+.......+++.+|+++++++ +||||+++++++.... ..
T Consensus 4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~ 83 (275)
T cd06608 4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQ 83 (275)
T ss_pred chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceE
Confidence 568899999999999999999996 4688999999876655567899999999999 7999999999876422 24
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.++||||+++++|.+++..... ....+++..+..++.|++.||+|||+. +|+||||+|+||++++++.+||+||
T Consensus 84 ~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~ 157 (275)
T cd06608 84 LWLVMELCGGGSVTDLVKGLRK---KGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDF 157 (275)
T ss_pred EEEEEEcCCCCcHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCC
Confidence 8999999999999999865321 113589999999999999999999997 9999999999999999999999999
Q ss_pred hhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|++...... .....++..|+|||........... ++.++|||||||++|||+||+.||..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~Dv~slG~il~~l~~g~~p~~~ 220 (275)
T cd06608 158 GVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDAS----YDARSDVWSLGITAIELADGKPPLCD 220 (275)
T ss_pred ccceecccchhhhcCccccccccCHhHhcccccccCC----ccccccHHHhHHHHHHHHhCCCCccc
Confidence 998754321 2234578889999987543322212 57899999999999999999999954
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-32 Score=267.24 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=162.9
Q ss_pred CCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.+....+|.|+.|.|+++. ..+|...|||.+.....+ .+++++.+.++.+.+ .|.||+.+|||.. +..+++.||.
T Consensus 94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~-n~dV~IcMel 172 (391)
T KOG0983|consen 94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFIT-NTDVFICMEL 172 (391)
T ss_pred hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEee-CchHHHHHHH
Confidence 3446789999999999998 567999999999765443 457888888888775 8999999998876 4578999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc-
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ- 690 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~- 690 (766)
|.. -++.++.+-. .++++...-++...++.||.||.++ .+|||||+||+|||+|+.|++|+||||++...
T Consensus 173 Ms~-C~ekLlkrik------~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsGrlv 243 (391)
T KOG0983|consen 173 MST-CAEKLLKRIK------GPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISGRLV 243 (391)
T ss_pred HHH-HHHHHHHHhc------CCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccccceee
Confidence 963 5666665543 2478888888999999999999887 48999999999999999999999999999665
Q ss_pred CCCC-ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGDA-HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~~-~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+... +.+.|.+.|||||.+....... |+.++|||||||.++|++||+.||..
T Consensus 244 dSkAhtrsAGC~~YMaPERidp~~~~k------YDiRaDVWSlGITlveLaTg~yPy~~ 296 (391)
T KOG0983|consen 244 DSKAHTRSAGCAAYMAPERIDPPDKPK------YDIRADVWSLGITLVELATGQYPYKG 296 (391)
T ss_pred cccccccccCCccccCccccCCCCCCc------cchhhhhhhhccchhhhhcccCCCCC
Confidence 3333 3457889999999887664332 68899999999999999999999954
|
|
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=277.05 Aligned_cols=200 Identities=18% Similarity=0.264 Sum_probs=156.5
Q ss_pred ceeecCCcceEEEEEEcCC---cEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 540 NLIKNGHSGDLFRGILEGG---IPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g---~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+.||+|+||.||+|...++ ..+++|.+..... ..+.|.+|+.+++.++||||++++++|.. ....|+||||+++
T Consensus 1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~ 79 (268)
T cd05086 1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVE-AIPYLLVFEYCEL 79 (268)
T ss_pred CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecC-CCccEEEEecCCC
Confidence 3699999999999985433 3566777654332 25689999999999999999999998875 4678999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC--
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG-- 692 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~-- 692 (766)
|+|.+++++... .....++.....++.||++||+|||+. +|+||||||+|||++.++.+||+|||++.....
T Consensus 80 ~~L~~~l~~~~~---~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~ 153 (268)
T cd05086 80 GDLKSYLSQEQW---HRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED 153 (268)
T ss_pred CcHHHHHHhhhc---ccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcch
Confidence 999999976432 112467778889999999999999987 999999999999999999999999999864311
Q ss_pred ---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 693 ---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 693 ---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
......++..|+|||.......+. .....+.++|||||||++|||++ |+.||..
T Consensus 154 ~~~~~~~~~~~~~y~aPE~~~~~~~~~--~~~~~~~~~DiwslG~~l~el~~~~~~p~~~ 211 (268)
T cd05086 154 YIETEDDKCVPLRWLAPELVGEFHGGL--ITAEQTKPSNVWALGVTLWELFENAAQPYSH 211 (268)
T ss_pred hhhcccCCcCcccccCchhcccccCcc--ccCCCCCcchhHHHHHHHHHHHhCCCCCCCC
Confidence 112335677899999875432211 11125789999999999999997 4667743
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=284.86 Aligned_cols=193 Identities=18% Similarity=0.264 Sum_probs=163.4
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
|.....||+|+||.||++.. .++..||||++...... .+.+.+|+.++++++||||+++++.+.. .+..|+||||++
T Consensus 24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~-~~~~~lv~e~~~ 102 (292)
T cd06658 24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLV-GDELWVVMEFLE 102 (292)
T ss_pred HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheec-CCeEEEEEeCCC
Confidence 33346799999999999985 56889999998654433 5678999999999999999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+++|.+++... .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 103 ~~~L~~~~~~~--------~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~ 171 (292)
T cd06658 103 GGALTDIVTHT--------RMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE 171 (292)
T ss_pred CCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccc
Confidence 99999988532 378999999999999999999997 9999999999999999999999999998765322
Q ss_pred ---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 ---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....++..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 172 ~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slGvil~el~~g~~p~~~~ 221 (292)
T cd06658 172 VPKRKSLVGTPYWMAPEVISRLP---------YGTEVDIWSLGIMVIEMIDGEPPYFNE 221 (292)
T ss_pred cccCceeecCccccCHHHHccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 22345788999999875433 467999999999999999999999643
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=279.10 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=155.6
Q ss_pred eeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHH---HHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 541 LIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELD---FFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~---~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
+||+|+||.||+|.. .+++.||+|.+...... ...+..|.. .++...||||+++++++.. ++..++||||+
T Consensus 1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~v~e~~ 79 (278)
T cd05606 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKLSFILDLM 79 (278)
T ss_pred CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeec-CCEEEEEEecC
Confidence 489999999999984 56899999998754322 223444543 4445689999999986654 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++.... .++|.++..++.|+++||+|||+. +|+||||||+||++++++.+||+|||+++....
T Consensus 80 ~g~~L~~~l~~~~-------~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~ 149 (278)
T cd05606 80 NGGDLHYHLSQHG-------VFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK 149 (278)
T ss_pred CCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCc
Confidence 9999999886543 389999999999999999999997 899999999999999999999999999875532
Q ss_pred -CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 -DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 -~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
......++..|+|||.+..+.. ++.++||||+||++|||++|+.||...
T Consensus 150 ~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~s~G~~l~~l~~g~~p~~~~ 199 (278)
T cd05606 150 KKPHASVGTHGYMAPEVLQKGVA--------YDSSADWFSLGCMLFKLLRGHSPFRQH 199 (278)
T ss_pred cCCcCcCCCcCCcCcHHhcCCCC--------CCcccchHhHHHHHHHHHhCCCCCCCC
Confidence 2334568899999998764322 478999999999999999999999644
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=283.20 Aligned_cols=202 Identities=13% Similarity=0.264 Sum_probs=163.9
Q ss_pred CCCCccceeecCCcceEEEEEE--------cCCcEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL--------EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|...+.||+|+||.||+|+. .++..||+|.+..... ..+++.+|+.+++.+ +||||+++++++.. .
T Consensus 15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-~ 93 (304)
T cd05101 15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-D 93 (304)
T ss_pred HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEec-C
Confidence 4577889999999999999973 1245799999864322 246789999999999 89999999997765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..|+||||+++|+|.+++.+..... .....++|.++..++.||+.||+|||+. +|+||||||+||++
T Consensus 94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nili 170 (304)
T cd05101 94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLV 170 (304)
T ss_pred CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEEE
Confidence 67999999999999999997643210 0123589999999999999999999997 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
++++.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||.
T Consensus 171 ~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~ 241 (304)
T cd05101 171 TENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRV---------YTHQSDVWSFGVLMWEIFTLGGSPYP 241 (304)
T ss_pred cCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCC---------CCchhhHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999865321 12223456799999875433 4789999999999999998 788874
Q ss_pred C
Q 004248 748 S 748 (766)
Q Consensus 748 ~ 748 (766)
.
T Consensus 242 ~ 242 (304)
T cd05101 242 G 242 (304)
T ss_pred c
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=281.53 Aligned_cols=196 Identities=19% Similarity=0.281 Sum_probs=164.5
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|++|.||+|+. .+|+.||||++...... .+.+.+|++++++++||||+++++++.+ ++..++|||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e 79 (284)
T cd07860 1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-ENKLYLVFE 79 (284)
T ss_pred CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhccc-CCcEEEEee
Confidence 478889999999999999985 57899999998654322 3578999999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ ++|.+++..... ..+++.++..++.|++.||+|||+. +++||||||+||++++++.+||+|||+++..
T Consensus 80 ~~~-~~l~~~~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~ 150 (284)
T cd07860 80 FLH-QDLKKFMDASPL-----SGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAF 150 (284)
T ss_pred ccc-cCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhc
Confidence 996 689998865432 3489999999999999999999987 9999999999999999999999999998765
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+.. .....++..|+|||....... ++.++|||||||++|||+||+.||..
T Consensus 151 ~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~il~~l~tg~~p~~~ 203 (284)
T cd07860 151 GVPVRTYTHEVVTLWYRAPEILLGCKY--------YSTAVDIWSLGCIFAEMVTRRALFPG 203 (284)
T ss_pred ccCccccccccccccccCCeEEecCCC--------CCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 322 223346778999997643321 46789999999999999999999853
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=279.75 Aligned_cols=202 Identities=19% Similarity=0.296 Sum_probs=165.9
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|...+.||+|+||.||+|... ++..||+|.+..... ...++.+|++++++++||||+++++++.. ....
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~ 84 (277)
T cd05032 6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVST-GQPT 84 (277)
T ss_pred HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcC-CCCc
Confidence 46788899999999999999853 247899999865432 24578999999999999999999998765 5679
Q ss_pred EEEEeeCCCCChhhhhhccCCCC---CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTE---DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~---~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
++||||+++|+|.+++....... .....++|.++..++.|++.||+|||+. +|+||||||+||++++++.+||+
T Consensus 85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~ 161 (277)
T cd05032 85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIG 161 (277)
T ss_pred EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEEC
Confidence 99999999999999997543211 1123589999999999999999999987 99999999999999999999999
Q ss_pred cchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 683 SLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 683 DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
|||+++..... .....++..|+|||....+. ++.++|||||||++||++| |+.||..
T Consensus 162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~t~g~~p~~~ 224 (277)
T cd05032 162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV---------FTTKSDVWSFGVVLWEMATLAEQPYQG 224 (277)
T ss_pred CcccchhhccCcccccCCCCCccccccCHHHHhcCC---------CCcccchHHHHHHHHHhhccCCCCCcc
Confidence 99998765321 12234567899999875433 4789999999999999998 8989843
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=277.74 Aligned_cols=196 Identities=20% Similarity=0.330 Sum_probs=161.7
Q ss_pred CCCccceeecCCcceEEEEEEc-CC---cEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GG---IPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+|+..+.||+|+||.||+|... ++ ..||||.+..... ..++|.+|+.++++++||||+++++++.. ++..++|
T Consensus 5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-~~~~~lv 83 (269)
T cd05065 5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-SRPVMII 83 (269)
T ss_pred HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECC-CCceEEE
Confidence 4777899999999999999853 33 3699999865322 25689999999999999999999997755 5678999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++....+ .+++.++..++.|++.||+|||+. +++||||||+||+++.++.+|++|||+++
T Consensus 84 ~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~ 154 (269)
T cd05065 84 TEFMENGALDSFLRQNDG------QFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSR 154 (269)
T ss_pred EecCCCCcHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCcccc
Confidence 999999999999975432 489999999999999999999997 99999999999999999999999999987
Q ss_pred hcCCCCc-----cc---eeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 689 AQGGDAH-----QS---RITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~-----~~---~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
....... .. ..+..|++||...... ++.++|||||||++|||++ |+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~DvwslG~~l~e~l~~g~~p~~~~ 215 (269)
T cd05065 155 FLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRK---------FTSASDVWSYGIVMWEVMSYGERPYWDM 215 (269)
T ss_pred ccccCccccccccccCCCcceeecCHhHhccCc---------ccchhhhhhhHHHHHHHhcCCCCCCCCC
Confidence 6532111 01 1134699999875443 4789999999999999886 99999644
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=280.68 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=165.9
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCH---HHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~---~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
|+..+.||+|+||+||+++. .+++.||+|.+....... ....+|+.++++++||||+++++++.. .+..++||||
T Consensus 1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-~~~~~~v~~~ 79 (260)
T PF00069_consen 1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-DNYLYIVMEY 79 (260)
T ss_dssp EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-SSEEEEEEEE
T ss_pred CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccc-cccccccccc
Confidence 45678999999999999995 457799999998765442 234569999999999999999998876 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc-
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ- 690 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~- 690 (766)
+++++|.+++.... .+++.++..++.|+++||+|||+. +|+||||||+||++++++++||+|||.+...
T Consensus 80 ~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~ 149 (260)
T PF00069_consen 80 CPGGSLQDYLQKNK-------PLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLS 149 (260)
T ss_dssp ETTEBHHHHHHHHS-------SBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEEST
T ss_pred cccccccccccccc-------cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence 99999999998433 389999999999999999999998 9999999999999999999999999998742
Q ss_pred --CCCCccceeeecccCCCCCC-CCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 --GGDAHQSRITRLLRLPQSSE-QGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 --~~~~~~~~~t~~y~aPe~~~-~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
........++..|+|||... ... .+.++||||+|++++||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~y~aPE~~~~~~~---------~~~~~Di~slG~il~~l~~~~~p~~~~ 202 (260)
T PF00069_consen 150 ENNENFNPFVGTPEYMAPEVLQQGKK---------YTRKSDIWSLGIILYELLTGKLPFEES 202 (260)
T ss_dssp STTSEBSSSSSSGGGSCHHHHTTTSS---------BSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred cccccccccccccccccccccccccc---------ccccccccccccccccccccccccccc
Confidence 22334456788999999876 222 578999999999999999999999654
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=276.28 Aligned_cols=191 Identities=20% Similarity=0.297 Sum_probs=158.3
Q ss_pred ceeecCCcceEEEEEEcC-C----------cEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 540 NLIKNGHSGDLFRGILEG-G----------IPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~-g----------~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+.||+|+||.||+|...+ + ..|++|.+.........|.+|+.++++++||||+++++++.. +..++|
T Consensus 1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~~lv 78 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR--DENIMV 78 (259)
T ss_pred CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec--CCcEEE
Confidence 468999999999999643 3 358888876544336789999999999999999999998876 567999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-------cEEe
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-------EVRL 681 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-------~~kl 681 (766)
|||+++|+|.+++..... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||
T Consensus 79 ~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl 149 (259)
T cd05037 79 EEYVKFGPLDVFLHREKN------NVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKL 149 (259)
T ss_pred EEcCCCCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEe
Confidence 999999999999976432 489999999999999999999987 999999999999999888 7999
Q ss_pred ccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 682 GSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+|||+++.... .....++..|+|||........ ++.++|||||||++|||++ |..|+...
T Consensus 150 ~Dfg~a~~~~~-~~~~~~~~~y~aPE~~~~~~~~-------~~~~~Di~slG~~~~~l~~~~~~p~~~~ 210 (259)
T cd05037 150 SDPGIPITVLS-REERVERIPWIAPECIRNGQAS-------LTIAADKWSFGTTLLEICSNGEEPLSTL 210 (259)
T ss_pred CCCCccccccc-ccccccCCCccChhhhcCCCCC-------cchhhHHHHHHHHHHHHHhCCCCCcccC
Confidence 99999986543 2223456679999987654211 5789999999999999999 57777544
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=284.82 Aligned_cols=202 Identities=14% Similarity=0.243 Sum_probs=163.8
Q ss_pred CCCCccceeecCCcceEEEEEEc--------CCcEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--------GGIPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|...+.||+|+||.||+|+.. ++..||+|.++.... ..+++.+|+++++++ +||||++++++|.. .
T Consensus 18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~-~ 96 (307)
T cd05098 18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ-D 96 (307)
T ss_pred HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-C
Confidence 46888999999999999999742 235799999975432 245788999999999 79999999998865 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..|+||||+++|+|.+++..++... .....++|.++..++.|++.||+|||+. +++||||||+||++
T Consensus 97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill 173 (307)
T cd05098 97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV 173 (307)
T ss_pred CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHheEE
Confidence 68999999999999999997643210 1123589999999999999999999987 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
++++.+||+|||.++..... .....++..|+|||...... ++.++|||||||++|||++ |+.||.
T Consensus 174 ~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~~l~el~~~g~~p~~ 244 (307)
T cd05098 174 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRI---------YTHQSDVWSFGVLLWEIFTLGGSPYP 244 (307)
T ss_pred cCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCC---------CCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999998765321 11122345799999875443 4789999999999999998 888884
Q ss_pred C
Q 004248 748 S 748 (766)
Q Consensus 748 ~ 748 (766)
.
T Consensus 245 ~ 245 (307)
T cd05098 245 G 245 (307)
T ss_pred c
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=275.56 Aligned_cols=189 Identities=21% Similarity=0.357 Sum_probs=157.9
Q ss_pred ceeecCCcceEEEEEEc--C--CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGILE--G--GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~--~--g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+.. + +..||+|.+..... ..+++.+|++++++++|||||++++++. .+..++||||++
T Consensus 1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~v~e~~~ 78 (257)
T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK--GEPLMLVMELAP 78 (257)
T ss_pred CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc--CCceEEEEEeCC
Confidence 47999999999999742 2 37899999976554 3567999999999999999999999764 356899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+.. .++|..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++.....
T Consensus 79 ~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~ 148 (257)
T cd05060 79 LGPLLKYLKKRR-------EIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAG 148 (257)
T ss_pred CCcHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecC
Confidence 999999997643 389999999999999999999987 8999999999999999999999999999865322
Q ss_pred Ccc------ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 AHQ------SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~~~------~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
... ..++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 149 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~~~~~g~~p~~~~ 202 (257)
T cd05060 149 SDYYRATTAGRWPLKWYAPECINYGK---------FSSKSDVWSYGVTLWEAFSYGAKPYGEM 202 (257)
T ss_pred CcccccccCccccccccCHHHhcCCC---------CCccchHHHHHHHHHHHHcCCCCCcccC
Confidence 111 11234699999875443 4789999999999999998 99998543
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=283.92 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=163.5
Q ss_pred CccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 537 SDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
+....||+|+||.||+|.. .+++.||+|.+...... .+.+.+|+.+++.++||||+++++++.. ++..|+||||+++
T Consensus 24 ~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-~~~~~iv~e~~~~ 102 (297)
T cd06659 24 ENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLV-GEELWVLMEFLQG 102 (297)
T ss_pred HhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheee-CCeEEEEEecCCC
Confidence 3456799999999999985 57899999999654433 5678899999999999999999997765 5689999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD- 693 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~- 693 (766)
++|.+++... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 103 ~~L~~~~~~~--------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~ 171 (297)
T cd06659 103 GALTDIVSQT--------RLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV 171 (297)
T ss_pred CCHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccccc
Confidence 9999987532 389999999999999999999987 9999999999999999999999999998765322
Q ss_pred --CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 --AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 --~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....++..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~~g~~p~~~~ 220 (297)
T cd06659 172 PKRKSLVGTPYWMAPEVISRTP---------YGTEVDIWSLGIMVIEMVDGEPPYFSD 220 (297)
T ss_pred ccccceecCccccCHHHHccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 23346788999999875433 468999999999999999999998643
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=282.02 Aligned_cols=196 Identities=18% Similarity=0.188 Sum_probs=164.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|.. .+++.||+|.+..... ..+.+.+|+++++.++||||+++++.+.. ++..++|
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv 79 (305)
T cd05609 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-KRHLCMV 79 (305)
T ss_pred CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-CCEEEEE
Confidence 4688899999999999999994 5688999999876532 13568899999999999999999987755 5678999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|++|||+++
T Consensus 80 ~e~~~g~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~ 149 (305)
T cd05609 80 MEYVEGGDCATLLKNIG-------ALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSK 149 (305)
T ss_pred EecCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCcc
Confidence 99999999999996543 389999999999999999999997 99999999999999999999999999986
Q ss_pred hcCCC------------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....++..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~vl~el~~g~~pf~~~ 219 (305)
T cd05609 150 IGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQG---------YGKPVDWWAMGIILYEFLVGCVPFFGD 219 (305)
T ss_pred ccCcCccccccccccccchhhccccCCccCccccCchhccCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 42100 01124577899999875433 478999999999999999999999643
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=275.67 Aligned_cols=196 Identities=18% Similarity=0.258 Sum_probs=164.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc------cCHHHHHHHHHHHhhcCCCCcccceeEEEecC-CcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS------VKTEAYLLELDFFSKVSHARLVPLLGHCMERE-NEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~ 605 (766)
.+|+..+.||+|+||.||+|.. .+++.||+|.+.... ...+.+.+|++++++++||||+++++++.+.+ +..
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (264)
T cd06653 2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL 81 (264)
T ss_pred CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence 4688899999999999999994 568999999885321 11357889999999999999999999775432 458
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++|+||+++++|.+++.... .+++.....++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 82 ~~v~e~~~~~~L~~~~~~~~-------~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg 151 (264)
T cd06653 82 SIFVEYMPGGSIKDQLKAYG-------ALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFG 151 (264)
T ss_pred EEEEEeCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECccc
Confidence 89999999999999987543 378999999999999999999987 99999999999999999999999999
Q ss_pred hhhhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 686 EVCAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+++.... ......++..|+|||...... .+.++|||||||++|||++|+.||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~ 211 (264)
T cd06653 152 ASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEG---------YGRKADVWSVACTVVEMLTEKPPWAE 211 (264)
T ss_pred cccccccccccCccccccCCcccccCHhhhcCCC---------CCccccHHHHHHHHHHHHhCCCCCCc
Confidence 9975421 112345788899999876543 46799999999999999999999953
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=278.35 Aligned_cols=195 Identities=22% Similarity=0.247 Sum_probs=168.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||.|+||.||+|+. .+++.||+|.+...... ...+.+|++++++++||||+++++++.+ +...|+|+|
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e 79 (274)
T cd06609 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLK-GSKLWIIME 79 (274)
T ss_pred ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEE-CCeEEEEEE
Confidence 3678889999999999999995 46899999998754322 4578999999999999999999998776 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.++++.. .+++..+..++.|++.|+.|||+. +|+||||||+||++++++.++|+|||+++..
T Consensus 80 ~~~~~~L~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~ 148 (274)
T cd06609 80 YCGGGSCLDLLKPG--------KLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQL 148 (274)
T ss_pred eeCCCcHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceee
Confidence 99999999998643 489999999999999999999997 8999999999999999999999999999776
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....++..|++||...... ++.++|||||||++|||+||+.||...
T Consensus 149 ~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~sDv~slG~il~~l~tg~~p~~~~ 201 (274)
T cd06609 149 TSTMSKRNTFVGTPFWMAPEVIKQSG---------YDEKADIWSLGITAIELAKGEPPLSDL 201 (274)
T ss_pred cccccccccccCCccccChhhhccCC---------CCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 432 23345677899999876543 478999999999999999999999543
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=274.97 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=168.9
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|+..+.||+|+||.||+|+.. +++.||+|.+..... .+++.+|++++++++||||+++++++.. +...|+++||+
T Consensus 3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~-~~~~~l~~e~~ 80 (256)
T cd06612 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQCDSPYIVKYYGSYFK-NTDLWIVMEYC 80 (256)
T ss_pred ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCcEeeeeeeeec-CCcEEEEEecC
Confidence 57888999999999999999965 488999999875533 6789999999999999999999998776 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++++|.+++.... ..++|..+..++.|++.||.|||+. +|+||||+|+||++++++.+||+|||++.....
T Consensus 81 ~~~~L~~~l~~~~------~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~ 151 (256)
T cd06612 81 GAGSVSDIMKITN------KTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTD 151 (256)
T ss_pred CCCcHHHHHHhCc------cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhccc
Confidence 9999999996533 2489999999999999999999987 999999999999999999999999999886532
Q ss_pred C---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 D---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....++..|++||...... ++.++|||||||++|||+||+.||...
T Consensus 152 ~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~s~G~il~~l~~g~~p~~~~ 202 (256)
T cd06612 152 TMAKRNTVIGTPFWMAPEVIQEIG---------YNNKADIWSLGITAIEMAEGKPPYSDI 202 (256)
T ss_pred CccccccccCCccccCHHHHhcCC---------CCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 2 22334677899999875432 578999999999999999999998543
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=274.87 Aligned_cols=197 Identities=21% Similarity=0.307 Sum_probs=166.8
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
.+|+..+.||+|+||.||+|...++..+|+|.+........+|.+|++++++++||||+++++++.. ....++||||++
T Consensus 4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e~~~ 82 (256)
T cd05112 4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE-RSPICLVFEFME 82 (256)
T ss_pred hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEcc-CCceEEEEEcCC
Confidence 3577789999999999999997778899999987655556789999999999999999999997755 567899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... .++|+.+..++.|++.|++|||+. +++||||||+||+++.++.+||+|||.++.....
T Consensus 83 ~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~ 153 (256)
T cd05112 83 HGCLSDYLRAQRG------KFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDD 153 (256)
T ss_pred CCcHHHHHHhCcc------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccC
Confidence 9999999875432 478999999999999999999987 8999999999999999999999999998765322
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
. ....++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 154 ~~~~~~~~~~~~~~~aPe~~~~~~---------~~~~~Dv~slG~~l~el~~~g~~p~~~~ 205 (256)
T cd05112 154 QYTSSTGTKFPVKWSSPEVFSFSK---------YSSKSDVWSFGVLMWEVFSEGKTPYENR 205 (256)
T ss_pred cccccCCCccchhhcCHhHhccCC---------cChHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 1 1122345799999875443 4679999999999999998 99998543
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=278.32 Aligned_cols=197 Identities=19% Similarity=0.295 Sum_probs=163.8
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCc----EEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGI----PVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~----~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||.||+|... +|. .||+|.+...... .+++.+|++++++++||||++++++|.. ...+
T Consensus 7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~~ 84 (279)
T cd05057 7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS--SQVQ 84 (279)
T ss_pred HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec--CceE
Confidence 45778899999999999999853 333 6899988655432 4678999999999999999999998875 5789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++++... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.
T Consensus 85 ~v~e~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~ 155 (279)
T cd05057 85 LITQLMPLGCLLDYVRNHKD------NIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGL 155 (279)
T ss_pred EEEecCCCCcHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCcc
Confidence 99999999999999976432 389999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCCc-----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 687 VCAQGGDAH-----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 687 a~~~~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
++....... ...++..|++||...... ++.++|||||||++||++| |+.||....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~~~~ 216 (279)
T cd05057 156 AKLLDVDEKEYHAEGGKVPIKWMALESILHRI---------YTHKSDVWSYGVTVWELMTFGAKPYEGIP 216 (279)
T ss_pred cccccCcccceecCCCcccccccCHHHhhcCC---------cCchhhHHHHHHHHHHHhcCCCCCCCCCC
Confidence 986532211 112245699999765433 4789999999999999999 999986543
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=275.45 Aligned_cols=190 Identities=22% Similarity=0.350 Sum_probs=160.3
Q ss_pred ceeecCCcceEEEEEEcC--C--cEEEEEEeecccc-C-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGILEG--G--IPVVIKRIDLQSV-K-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~--g--~~vavK~l~~~~~-~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|++|.||+|...+ + ..||||.+..... . .++|.+|++++++++||||+++++++.. ...++||||++
T Consensus 1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~v~e~~~ 78 (257)
T cd05040 1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT--HPLMMVTELAP 78 (257)
T ss_pred CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC--CeEEEEEEecC
Confidence 468999999999998533 3 3699999976555 2 5689999999999999999999998765 67999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+... ..++|.....++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++.....
T Consensus 79 ~~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~ 150 (257)
T cd05040 79 LGSLLDRLRKDAL-----GHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQN 150 (257)
T ss_pred CCcHHHHHHhccc-----ccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEecccccccccccc
Confidence 9999999976431 2489999999999999999999997 9999999999999999999999999999876331
Q ss_pred C------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 A------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. ....++..|++||...... ++.++|||||||++|||+| |+.||..
T Consensus 151 ~~~~~~~~~~~~~~~y~~pE~~~~~~---------~~~~~Di~slG~~l~el~t~g~~p~~~ 203 (257)
T cd05040 151 EDHYVMEEHLKVPFAWCAPESLRTRT---------FSHASDVWMFGVTLWEMFTYGEEPWAG 203 (257)
T ss_pred ccceecccCCCCCceecCHHHhcccC---------cCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence 1 1233566799999765433 4789999999999999999 9999853
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=280.97 Aligned_cols=204 Identities=15% Similarity=0.250 Sum_probs=165.1
Q ss_pred hCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMEREN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 603 (766)
.++|+..+.||+|+||.||+|... ....||+|.+...... ..++.+|++++.++ +||||+++++++.. ++
T Consensus 11 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-~~ 89 (293)
T cd05053 11 RDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ-EG 89 (293)
T ss_pred HhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC-CC
Confidence 356888899999999999999853 2368999998654322 35688999999999 89999999998865 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~ 674 (766)
..++||||+++|+|.++++++... ......++|..++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~~ 166 (293)
T cd05053 90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVT 166 (293)
T ss_pred CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEEc
Confidence 899999999999999999753210 01224589999999999999999999987 999999999999999
Q ss_pred CCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 675 DKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 675 ~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+++.+||+|||+++...... ....++..|+|||...... ++.++|||||||++|||++ |..||..
T Consensus 167 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~~ 237 (293)
T cd05053 167 EDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRV---------YTHQSDVWSFGVLLWEIFTLGGSPYPG 237 (293)
T ss_pred CCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCC---------cCcccceeehhhHHHHHhcCCCCCCCC
Confidence 99999999999998653211 1122345699999875443 4789999999999999998 9999854
Q ss_pred C
Q 004248 749 S 749 (766)
Q Consensus 749 ~ 749 (766)
.
T Consensus 238 ~ 238 (293)
T cd05053 238 I 238 (293)
T ss_pred C
Confidence 3
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=281.45 Aligned_cols=192 Identities=21% Similarity=0.289 Sum_probs=163.4
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
|+..+.||+|+||.||+|.. .+++.||+|.++..... .+.+.+|++++++++||||+++++++.. ++..|+||||+
T Consensus 6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~ 84 (277)
T cd06642 6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLK-GTKLWIIMEYL 84 (277)
T ss_pred HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhccccc-CCceEEEEEcc
Confidence 55678899999999999985 56889999998644322 4578999999999999999999997765 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++... .+++..+..++.|+++|++|||+. +++|+||||+||++++++.+|++|||+++....
T Consensus 85 ~~~~L~~~~~~~--------~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~ 153 (277)
T cd06642 85 GGGSALDLLKPG--------PLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD 153 (277)
T ss_pred CCCcHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccC
Confidence 999999988532 388999999999999999999997 999999999999999999999999999976532
Q ss_pred CC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 DA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. ....++..|+|||...... ++.++|||||||++|||+||+.|+..
T Consensus 154 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~tg~~p~~~ 203 (277)
T cd06642 154 TQIKRNTFVGTPFWMAPEVIKQSA---------YDFKADIWSLGITAIELAKGEPPNSD 203 (277)
T ss_pred cchhhhcccCcccccCHHHhCcCC---------CchhhhHHHHHHHHHHHHhCCCCCcc
Confidence 21 2234678899999876443 47899999999999999999999853
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=277.16 Aligned_cols=197 Identities=21% Similarity=0.358 Sum_probs=157.3
Q ss_pred ceeecCCcceEEEEEEc-CCc--EEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGILE-GGI--PVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~-~g~--~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||.||+|+.. ++. .+|+|.+..... ..+.+.+|+++++++ +||||+++++++.. .+..++||||++
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~~~~~lv~e~~~ 79 (270)
T cd05047 1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-RGYLYLAIEYAP 79 (270)
T ss_pred CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEec-CCCceEEEEeCC
Confidence 46899999999999964 444 578888864322 246789999999999 89999999998765 567899999999
Q ss_pred CCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 614 NGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
+|+|.++++...... .....+++.++..++.|++.|++|||+. +++||||||+||++++++.+|++||
T Consensus 80 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~df 156 (270)
T cd05047 80 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADF 156 (270)
T ss_pred CCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECCC
Confidence 999999997543100 1123589999999999999999999987 9999999999999999999999999
Q ss_pred hhhhhcCCCC--ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 685 SEVCAQGGDA--HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~~~--~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|+++...... .....+..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 157 gl~~~~~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Di~slG~il~el~~~g~~pf~~~ 215 (270)
T cd05047 157 GLSRGQEVYVKKTMGRLPVRWMAIESLNYSV---------YTTNSDVWSYGVLLWEIVSLGGTPYCGM 215 (270)
T ss_pred CCccccchhhhccCCCCccccCChHHHccCC---------CCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence 9986432111 1112345699999774433 4789999999999999997 99998543
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=288.07 Aligned_cols=205 Identities=16% Similarity=0.228 Sum_probs=172.2
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEE
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCM 599 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~ 599 (766)
...+++...+++|+..+.||+|+||.||+|. ..+++.||+|++..... ..+.+.+|++++++++||||+++++++.
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~ 86 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT 86 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence 4456777888999999999999999999998 46799999999865322 2457889999999999999999999765
Q ss_pred ec-----CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC
Q 004248 600 ER-----ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (766)
Q Consensus 600 ~~-----~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~ 674 (766)
.. ....|+++|++ +++|.+++..+ .+++..+..++.|+++||+|||+. +|+||||||+||+++
T Consensus 87 ~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~--------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~ 154 (345)
T cd07877 87 PARSLEEFNDVYLVTHLM-GADLNNIVKCQ--------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVN 154 (345)
T ss_pred ecccccccccEEEEehhc-ccCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEc
Confidence 32 13478888887 67998887532 389999999999999999999997 999999999999999
Q ss_pred CCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 675 DKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 675 ~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+++.+||+|||+++..........++..|+|||....... ++.++|||||||++|||++|+.||..
T Consensus 155 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DvwslG~il~el~~g~~pf~~ 220 (345)
T cd07877 155 EDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMH--------YNQTVDIWSVGCIMAELLTGRTLFPG 220 (345)
T ss_pred CCCCEEEecccccccccccccccccCCCccCHHHHhCccC--------CCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999876555555677889999998654221 47899999999999999999999843
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=281.44 Aligned_cols=202 Identities=19% Similarity=0.335 Sum_probs=162.5
Q ss_pred CCCCccceeecCCcceEEEEEEcC---------------CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCccccee
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG---------------GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLG 596 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~---------------g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~ 596 (766)
++|+..+.||+|+||.||+|.... ...||+|.++..... .+.|.+|++++++++||||+++++
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~ 84 (295)
T cd05097 5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG 84 (295)
T ss_pred HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence 468888999999999999987432 235899998654322 457999999999999999999999
Q ss_pred EEEecCCcEEEEEeeCCCCChhhhhhccCCC-----CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCe
Q 004248 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNT-----EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSI 671 (766)
Q Consensus 597 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~-----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NI 671 (766)
++.. .+..++||||+++|+|.+++...... ......++|.++..++.|++.||+|||+. +++||||||+||
T Consensus 85 ~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Ni 160 (295)
T cd05097 85 VCVS-DDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNC 160 (295)
T ss_pred EEcC-CCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhE
Confidence 8865 56899999999999999999653210 01113478999999999999999999997 999999999999
Q ss_pred eeCCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc--CCC
Q 004248 672 LLDDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF--NNH 744 (766)
Q Consensus 672 Ll~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt--G~~ 744 (766)
++++++.+||+|||+++...... ....++..|+|||....+. ++.++|||||||++|||++ |..
T Consensus 161 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwSlG~~l~el~~~~~~~ 231 (295)
T cd05097 161 LVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGK---------FTTASDVWAFGVTLWEMFTLCKEQ 231 (295)
T ss_pred EEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCC---------cCchhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999987642211 1123356799999875443 4789999999999999998 567
Q ss_pred CCCC
Q 004248 745 LNLS 748 (766)
Q Consensus 745 p~~~ 748 (766)
||..
T Consensus 232 p~~~ 235 (295)
T cd05097 232 PYSL 235 (295)
T ss_pred CCcc
Confidence 7753
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=275.95 Aligned_cols=199 Identities=19% Similarity=0.281 Sum_probs=159.0
Q ss_pred CccceeecCCcceEEEEEEcC-Cc--EEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC-----CcE
Q 004248 537 SDANLIKNGHSGDLFRGILEG-GI--PVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE-----NEK 605 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~-g~--~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~~~ 605 (766)
...++||+|+||.||+|+..+ +. .||+|.++.... ..+.|.+|++++++++||||++++++|.... ...
T Consensus 2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 81 (272)
T cd05075 2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP 81 (272)
T ss_pred ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence 456889999999999999644 33 699998865422 2467899999999999999999999875421 246
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+++|+|.+++..... ......++|.....++.|++.||+|||+. +|+||||||+|||+++++.+||+|||
T Consensus 82 ~~v~e~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg 157 (272)
T cd05075 82 VVILPFMKHGDLHSFLLYSRL-GDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFG 157 (272)
T ss_pred EEEEEeCCCCcHHHHHHHhcc-cCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCC
Confidence 899999999999998753221 11223589999999999999999999997 99999999999999999999999999
Q ss_pred hhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 686 EVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+++...... ....++..|++||...... ++.++|||||||++|||++ |+.||..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~~ 217 (272)
T cd05075 158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRV---------YTTKSDVWSFGVTMWEIATRGQTPYPG 217 (272)
T ss_pred cccccCcccceecCCcccCCcccCCHHHccCCC---------cChHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 998653221 1123455789999775433 4789999999999999999 7888853
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=278.30 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=165.8
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||+|.. .+|+.||||++..... ..+.+.+|++++++++||||+++++++.. ++..++|||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~~v~e 79 (286)
T cd07832 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH-GSGFVLVME 79 (286)
T ss_pred CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEec-CCeeEEEec
Confidence 477889999999999999995 5789999999976442 24679999999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+ +++|.+++.... ..+++.++..++.||++||+|||+. +|+||||||+||++++++.+||+|||.+...
T Consensus 80 ~~-~~~L~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~ 149 (286)
T cd07832 80 YM-PSDLSEVLRDEE------RPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLF 149 (286)
T ss_pred cc-CCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccc
Confidence 99 999999987543 2489999999999999999999997 9999999999999999999999999998866
Q ss_pred CCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 691 GGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 691 ~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
... .....++..|+|||....... ++.++||||+||++|||+||++||.
T Consensus 150 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~~l~~l~tg~~~~~ 202 (286)
T cd07832 150 SEEEPRLYSHQVATRWYRAPELLYGARK--------YDPGVDLWAVGCIFAELLNGSPLFP 202 (286)
T ss_pred cCCCCCccccccCcccccCceeeecccc--------CCchhHHHHHHHHHHHHHcCCcCcC
Confidence 332 234567889999998753321 4789999999999999999987764
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=283.18 Aligned_cols=198 Identities=21% Similarity=0.234 Sum_probs=166.7
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|... +++.||+|.+...... .+.+.+|++++++++||||+++++.+.. ++..|+|
T Consensus 1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv 79 (316)
T cd05574 1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQT-ETYLCLV 79 (316)
T ss_pred CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeec-CCEEEEE
Confidence 46888899999999999999954 5899999999764432 3568899999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++.
T Consensus 80 ~e~~~~~~L~~~~~~~~~-----~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~ 151 (316)
T cd05574 80 MDYCPGGELFRLLQRQPG-----KCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSK 151 (316)
T ss_pred EEecCCCCHHHHHHhCCC-----CccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhh
Confidence 999999999999875432 3589999999999999999999987 99999999999999999999999999986
Q ss_pred hcCCCC--------------------------------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHH
Q 004248 689 AQGGDA--------------------------------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPL 736 (766)
Q Consensus 689 ~~~~~~--------------------------------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl 736 (766)
...... ....++..|+|||...... ++.++|||||||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~---------~~~~~Di~slG~ll 222 (316)
T cd05574 152 QSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDG---------HGSAVDWWTLGILL 222 (316)
T ss_pred cccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCC---------CCchHHHHHHHHHH
Confidence 542110 1224677899999875433 47899999999999
Q ss_pred HHHhcCCCCCCCC
Q 004248 737 FSAIFNNHLNLSS 749 (766)
Q Consensus 737 ~elltG~~p~~~~ 749 (766)
|||++|+.||...
T Consensus 223 ~~l~~g~~pf~~~ 235 (316)
T cd05574 223 YEMLYGTTPFKGS 235 (316)
T ss_pred HHHhhCCCCCCCC
Confidence 9999999999543
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=275.05 Aligned_cols=193 Identities=20% Similarity=0.352 Sum_probs=163.2
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----------HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----------TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
|.....||+|+||.||+|.. .+++.||+|.+...... .+.+.+|++++++++||||+++++++.+ ++.
T Consensus 2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~ 80 (267)
T cd06628 2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLD-ADH 80 (267)
T ss_pred ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEe-CCc
Confidence 55678999999999999985 56889999988643211 2468899999999999999999998766 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.++||||+++++|.+++.+.. .+++..+..++.|++.||+|||+. +++||||||+||++++++.+||+||
T Consensus 81 ~~lv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~df 150 (267)
T cd06628 81 LNIFLEYVPGGSVAALLNNYG-------AFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDF 150 (267)
T ss_pred cEEEEEecCCCCHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEeccc
Confidence 899999999999999997543 388999999999999999999987 9999999999999999999999999
Q ss_pred hhhhhcCCCC---------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGGDA---------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~~---------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|.++...... ....++..|+|||...... ++.++||||+||++|||+||+.||..
T Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~ 214 (267)
T cd06628 151 GISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTS---------YTRKADIWSLGCLVVEMLTGKHPFPD 214 (267)
T ss_pred CCCcccccccccCCccccccccCCCcCccChhHhccCC---------CCchhhhHHHHHHHHHHhhCCCCCCC
Confidence 9987653211 1234677899999875443 46789999999999999999999954
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=282.80 Aligned_cols=195 Identities=19% Similarity=0.319 Sum_probs=161.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc----EEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI----PVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||.||+|+. .+|. .||+|.+...... ..++.+|+.++++++||||++++++|.. ...+
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~--~~~~ 84 (303)
T cd05110 7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS--PTIQ 84 (303)
T ss_pred hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC--CCce
Confidence 4677889999999999999984 4454 5789988654322 3478999999999999999999998864 3578
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|+||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+
T Consensus 85 ~v~e~~~~g~l~~~~~~~~------~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~ 155 (303)
T cd05110 85 LVTQLMPHGCLLDYVHEHK------DNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGL 155 (303)
T ss_pred eeehhcCCCCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEccccc
Confidence 9999999999999987543 2489999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 687 VCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 687 a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
++...... ....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~DiwslG~~l~el~t~g~~p~~~ 214 (303)
T cd05110 156 ARLLEGDEKEYNADGGKMPIKWMALECIHYRK---------FTHQSDVWSYGVTIWELMTFGGKPYDG 214 (303)
T ss_pred cccccCcccccccCCCccccccCCHHHhccCC---------CChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 98653221 1223456799999875433 4789999999999999997 8999854
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=280.81 Aligned_cols=202 Identities=19% Similarity=0.318 Sum_probs=163.1
Q ss_pred CCCCccceeecCCcceEEEEEEc-----------------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-----------------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPL 594 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-----------------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l 594 (766)
++|+..+.||+|+||.||++... ++..||+|.+...... .++|.+|++++++++||||+++
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~ 84 (296)
T cd05095 5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL 84 (296)
T ss_pred hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 46888999999999999998532 2457999998754322 4679999999999999999999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhhhhccCCCC----CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCC
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTE----DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASS 670 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~N 670 (766)
++++.. ++..++||||+++|+|.+++....... .....+++.+...++.|++.||+|||+. +|+||||||+|
T Consensus 85 ~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~N 160 (296)
T cd05095 85 LAVCIT-SDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRN 160 (296)
T ss_pred EEEEec-CCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhe
Confidence 998765 567899999999999999997643211 1123588999999999999999999997 99999999999
Q ss_pred eeeCCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc--CC
Q 004248 671 ILLDDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF--NN 743 (766)
Q Consensus 671 ILl~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt--G~ 743 (766)
|++++++.+||+|||+++...... ....++..|++||....+. ++.++|||||||++|||+| |.
T Consensus 161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~~DiwSlG~~l~el~~~~~~ 231 (296)
T cd05095 161 CLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGK---------FTTASDVWAFGVTLWEILTLCKE 231 (296)
T ss_pred EEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCC---------ccchhhhhHHHHHHHHHHHhCCC
Confidence 999999999999999997652211 1122345789999654443 4789999999999999998 77
Q ss_pred CCCCC
Q 004248 744 HLNLS 748 (766)
Q Consensus 744 ~p~~~ 748 (766)
.||..
T Consensus 232 ~p~~~ 236 (296)
T cd05095 232 QPYSQ 236 (296)
T ss_pred CCccc
Confidence 88854
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=272.91 Aligned_cols=196 Identities=21% Similarity=0.265 Sum_probs=166.3
Q ss_pred CCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
+|+..+.||+|+||+||+|... +++.||+|.+..... ..+.+.+|++++++++||||+++++++.. ++..++
T Consensus 1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~l 79 (258)
T cd06632 1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTERE-EDNLYI 79 (258)
T ss_pred CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEec-CCeEEE
Confidence 3667789999999999999965 789999999865431 24578999999999999999999997765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++++|.+++.+.. .+++..+..++.|++.|++|||+. +|+||||||+||++++++.+||+|||.+
T Consensus 80 v~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~ 149 (258)
T cd06632 80 FLELVPGGSLAKLLKKYG-------SFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMA 149 (258)
T ss_pred EEEecCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccc
Confidence 999999999999997543 388999999999999999999987 9999999999999999999999999998
Q ss_pred hhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
...... .....++..|++||...... . ++.++|+|||||++|||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~-~-------~~~~~D~~slG~~l~~l~~g~~pf~~~ 205 (258)
T cd06632 150 KQVVEFSFAKSFKGSPYWMAPEVIAQQG-G-------YGLAADIWSLGCTVLEMATGKPPWSQL 205 (258)
T ss_pred eeccccccccccCCCcceeCHHHhcCCC-C-------CCchhhhHHHHHHHHHHHhCCCCcccC
Confidence 765322 23445778899999865433 1 478999999999999999999999544
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=277.93 Aligned_cols=189 Identities=20% Similarity=0.257 Sum_probs=155.3
Q ss_pred ceeecCCcceEEEEEEc-C-------CcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 540 NLIKNGHSGDLFRGILE-G-------GIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~-~-------g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+.||+|+||.||+|... . ...||+|.+...... .+++.+|+.+++.++|||||++++++.. ++..++|||
T Consensus 1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-~~~~~lv~e 79 (258)
T cd05078 1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVC-GDESIMVQE 79 (258)
T ss_pred CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEe-CCCcEEEEe
Confidence 46899999999999843 2 335889988654333 4678999999999999999999998876 467899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc--------EEec
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE--------VRLG 682 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~--------~kl~ 682 (766)
|+++|+|.++++.++. .++|..+..++.||+.||+|||+. +|+||||||+||+++.+++ +|++
T Consensus 80 ~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~ 150 (258)
T cd05078 80 YVKFGSLDTYLKKNKN------LINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLS 150 (258)
T ss_pred cCCCCcHHHHHhcCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEec
Confidence 9999999999975432 489999999999999999999997 9999999999999988765 5999
Q ss_pred cchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCC-CCCC
Q 004248 683 SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN-HLNL 747 (766)
Q Consensus 683 DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~-~p~~ 747 (766)
|||++...... ....++..|+|||.+..... ++.++|||||||++|||++|. .|+.
T Consensus 151 d~g~~~~~~~~-~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~~l~~l~~g~~~~~~ 207 (258)
T cd05078 151 DPGISITVLPK-EILLERIPWVPPECIENPQN--------LSLAADKWSFGTTLWEIFSGGDKPLS 207 (258)
T ss_pred ccccccccCCc-hhccccCCccCchhccCCCC--------CCchhhHHHHHHHHHHHHcCCCCChh
Confidence 99988655322 22356778999998764322 478999999999999999995 5553
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=280.72 Aligned_cols=198 Identities=21% Similarity=0.262 Sum_probs=164.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+.|+..+.||+|+||.||+|+. .+++.||+|++...... .+++.+|++++++++||||++++++|.. ++..|+|
T Consensus 15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~-~~~~~lv 93 (307)
T cd06607 15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLR-EHTAWLV 93 (307)
T ss_pred hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEe-CCeEEEE
Confidence 4588889999999999999985 46899999998643321 3568899999999999999999998876 5678999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||++ |++.+++.... ..+++..+..++.|++.||.|||+. +|+||||||+||++++++.+||+|||++.
T Consensus 94 ~e~~~-g~l~~~~~~~~------~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~ 163 (307)
T cd06607 94 MEYCL-GSASDILEVHK------KPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSAS 163 (307)
T ss_pred HHhhC-CCHHHHHHHcc------cCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcce
Confidence 99998 58877775432 2489999999999999999999987 99999999999999999999999999987
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ....++..|+|||.......+. ++.++|||||||++|||+||+.||...
T Consensus 164 ~~~~~-~~~~~~~~y~aPE~~~~~~~~~------~~~~sDv~s~G~il~el~tg~~p~~~~ 217 (307)
T cd06607 164 LVSPA-NSFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFNM 217 (307)
T ss_pred ecCCC-CCccCCccccCceeeeccCCCC------CCcccchHHHHHHHHHHHcCCCCCCCc
Confidence 65322 3345678899999874322111 578999999999999999999998643
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=280.42 Aligned_cols=204 Identities=20% Similarity=0.272 Sum_probs=165.7
Q ss_pred hCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
.++|+..+.||+|+||.||+|... ++..||+|.+...... .++|.+|++++++++||||+++++++.. ++.
T Consensus 4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~-~~~ 82 (288)
T cd05050 4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAV-GKP 82 (288)
T ss_pred hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcC-CCc
Confidence 457888999999999999999853 4679999998654322 4579999999999999999999997765 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCC---------------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCC
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT---------------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQAS 669 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~---------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~ 669 (766)
.++||||+++|+|.+++...... ......+++.+++.++.|++.||+|||+. +++||||||+
T Consensus 83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~ 159 (288)
T cd05050 83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATR 159 (288)
T ss_pred cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHh
Confidence 89999999999999999753210 01123588999999999999999999987 9999999999
Q ss_pred CeeeCCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CC
Q 004248 670 SILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NN 743 (766)
Q Consensus 670 NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~ 743 (766)
||++++++.+||+|||+++..... ......+..|+|||...... ++.++|||||||++|||++ |.
T Consensus 160 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~~~~~ 230 (288)
T cd05050 160 NCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNR---------YTTESDVWAYGVVLWEIFSYGM 230 (288)
T ss_pred heEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCC---------CCchhHHHHHHHHHHHHHhCCC
Confidence 999999999999999998754221 11122345699999765443 4789999999999999998 88
Q ss_pred CCCCCC
Q 004248 744 HLNLSS 749 (766)
Q Consensus 744 ~p~~~~ 749 (766)
.||...
T Consensus 231 ~p~~~~ 236 (288)
T cd05050 231 QPYYGM 236 (288)
T ss_pred CCCCCC
Confidence 898543
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=278.55 Aligned_cols=202 Identities=21% Similarity=0.275 Sum_probs=164.3
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..++||+|+||.||++.. .++..+|+|.+...... .+.|.+|++++++++||||+++++++.. .+..+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~ 83 (280)
T cd05092 5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTE-GRPLL 83 (280)
T ss_pred HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEec-CCceE
Confidence 3567789999999999999973 23668999988654333 5679999999999999999999997765 56789
Q ss_pred EEEeeCCCCChhhhhhccCCC--------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNT--------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~--------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
+||||+++|+|.++++..... ......++|.++..++.|++.|++|||+. +|+||||||+||++++++.
T Consensus 84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~~ 160 (280)
T cd05092 84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGLV 160 (280)
T ss_pred EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCCC
Confidence 999999999999999754310 01113489999999999999999999987 9999999999999999999
Q ss_pred EEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 679 VRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+||+|||+++...... ....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 161 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~~ 227 (280)
T cd05092 161 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK---------FTTESDIWSFGVVLWEIFTYGKQPWYQ 227 (280)
T ss_pred EEECCCCceeEcCCCceeecCCCccccccccCHHHhccCC---------cCchhhHHHHHHHHHHHHcCCCCCCcc
Confidence 9999999987542211 1223356799999875443 4789999999999999998 8999854
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=279.21 Aligned_cols=195 Identities=19% Similarity=0.272 Sum_probs=166.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|...+.||+|+||.||+|.. .+++.||+|.+...... .+.+.+|+.++++++||||+++++++.. ++..|+|+||
T Consensus 19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-~~~~~lv~e~ 97 (293)
T cd06647 19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLV-GDELWVVMEY 97 (293)
T ss_pred hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeee-CCcEEEEEec
Confidence 5688889999999999999984 57889999998654333 5678999999999999999999998866 5679999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++.+. .+++.++..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++....
T Consensus 98 ~~~~~L~~~~~~~--------~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~ 166 (293)
T cd06647 98 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 166 (293)
T ss_pred CCCCcHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceeccc
Confidence 9999999998643 378999999999999999999997 99999999999999999999999999886553
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|++||...... ++.++|||||||++||+++|+.||...
T Consensus 167 ~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Dv~slG~ll~~ll~g~~pf~~~ 218 (293)
T cd06647 167 PEQSKRSTMVGTPYWMAPEVVTRKA---------YGPKVDIWSLGIMAIEMVEGEPPYLNE 218 (293)
T ss_pred ccccccccccCChhhcCchhhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 22 12235677899999875443 478999999999999999999999644
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=279.63 Aligned_cols=203 Identities=20% Similarity=0.318 Sum_probs=165.1
Q ss_pred hCCCCccceeecCCcceEEEEEEcC-----------------CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCccc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEG-----------------GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVP 593 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~-----------------g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~ 593 (766)
.++|+..+.||+|+||.||+|.... +..||+|.+..... ..++|.+|++++++++||||++
T Consensus 4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~ 83 (296)
T cd05051 4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR 83 (296)
T ss_pred hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence 3568889999999999999988432 24689999875432 2567999999999999999999
Q ss_pred ceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCC----CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCC
Q 004248 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTE----DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQAS 669 (766)
Q Consensus 594 l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~----~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~ 669 (766)
+++++.. ++..++||||+++++|.+++.+..... .....+++..+..++.|++.||+|||+. +|+||||||+
T Consensus 84 ~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp~ 159 (296)
T cd05051 84 LLGVCTV-DPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATR 159 (296)
T ss_pred EEEEEec-CCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cccccccchh
Confidence 9998765 568999999999999999997644210 1123589999999999999999999987 9999999999
Q ss_pred CeeeCCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc--C
Q 004248 670 SILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF--N 742 (766)
Q Consensus 670 NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt--G 742 (766)
||++++++.+||+|||+++..... .....++..|+|||....+. ++.++|||||||++|||++ |
T Consensus 160 Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~~l~el~~~~~ 230 (296)
T cd05051 160 NCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGK---------FTTKSDVWAFGVTLWEILTLCR 230 (296)
T ss_pred ceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCC---------CCccchhhhhHHHHHHHHhcCC
Confidence 999999999999999998754221 11223456799999875433 5789999999999999998 6
Q ss_pred CCCCCC
Q 004248 743 NHLNLS 748 (766)
Q Consensus 743 ~~p~~~ 748 (766)
..||..
T Consensus 231 ~~p~~~ 236 (296)
T cd05051 231 EQPYEH 236 (296)
T ss_pred CCCCCC
Confidence 778753
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=276.90 Aligned_cols=194 Identities=21% Similarity=0.292 Sum_probs=165.2
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.|+..+.||+|+||.||+|.. .++..||+|.+..... ..+.+.+|++++++++||||+++++++.+ ++..++||||
T Consensus 5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~ 83 (277)
T cd06640 5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-GTKLWIIMEY 83 (277)
T ss_pred hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-CCEEEEEEec
Confidence 466778999999999999995 4688999999875432 24678999999999999999999998766 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++... .+++.+...++.|++.||+|||+. +++|+||||+||++++++.++++|||++....
T Consensus 84 ~~~~~L~~~i~~~--------~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~ 152 (277)
T cd06640 84 LGGGSALDLLRAG--------PFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLT 152 (277)
T ss_pred CCCCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceecc
Confidence 9999999998642 378899999999999999999987 99999999999999999999999999997653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|.|||...... .+.++|||||||++|||+||+.||...
T Consensus 153 ~~~~~~~~~~~~~~y~apE~~~~~~---------~~~~~Dv~slG~il~el~tg~~p~~~~ 204 (277)
T cd06640 153 DTQIKRNTFVGTPFWMAPEVIQQSA---------YDSKADIWSLGITAIELAKGEPPNSDM 204 (277)
T ss_pred CCccccccccCcccccCHhHhccCC---------CccHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 22 12235677899999875433 478999999999999999999998543
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=282.02 Aligned_cols=202 Identities=15% Similarity=0.265 Sum_probs=163.4
Q ss_pred CCCCccceeecCCcceEEEEEEc--------CCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|...+.||+|+||.||+|+.. ....||+|.++..... ..++.+|+++++++ +||||++++++|.. +
T Consensus 12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~ 90 (314)
T cd05099 12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ-E 90 (314)
T ss_pred HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc-C
Confidence 46778899999999999999731 2457999998654322 45788999999999 69999999998765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..|+||||+++|+|.+++...... ......++|.++..++.|++.||+|||+. +|+||||||+||++
T Consensus 91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill 167 (314)
T cd05099 91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARNVLV 167 (314)
T ss_pred CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeeccccceeEEE
Confidence 6799999999999999999764321 01123589999999999999999999987 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
++++.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||++ |+.||.
T Consensus 168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DiwslG~~l~el~~~g~~p~~ 238 (314)
T cd05099 168 TEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRV---------YTHQSDVWSFGILMWEIFTLGGSPYP 238 (314)
T ss_pred cCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCC---------cCccchhhHHHHHHHHHHhCCCCCCC
Confidence 99999999999999865321 11122345799999875443 4789999999999999999 888885
Q ss_pred C
Q 004248 748 S 748 (766)
Q Consensus 748 ~ 748 (766)
.
T Consensus 239 ~ 239 (314)
T cd05099 239 G 239 (314)
T ss_pred C
Confidence 4
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=273.24 Aligned_cols=203 Identities=18% Similarity=0.240 Sum_probs=168.2
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~lV~ 609 (766)
+|+..+.||+|+||.||+|. ..+++.||+|.+...... .+++.+|++++++++||||+++++++... +...+++|
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~ 80 (265)
T cd08217 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM 80 (265)
T ss_pred CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence 47788999999999999998 467889999998654322 45788999999999999999999977542 34579999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC--CCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC--TLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||+++|+|.+++.+... ....+++.+++.++.|++.||+|||..+ ..+|+||||||+||++++++.+||+|||++
T Consensus 81 e~~~~~~L~~~l~~~~~---~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~ 157 (265)
T cd08217 81 EYCEGGDLAQLIQKCKK---ERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA 157 (265)
T ss_pred hhccCCCHHHHHHHHhh---cccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccc
Confidence 99999999999975321 1235899999999999999999999332 349999999999999999999999999999
Q ss_pred hhcCCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+...... ....++..|++||...... ++.++|||||||+++||++|+.||...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~pE~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 213 (265)
T cd08217 158 KILGHDSSFAKTYVGTPYYMSPEQLNHMS---------YDEKSDIWSLGCLIYELCALSPPFTAR 213 (265)
T ss_pred ccccCCcccccccccCCCccChhhhcCCC---------CCchhHHHHHHHHHHHHHHCCCcccCc
Confidence 8764322 2346788999999876544 468999999999999999999999654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=275.31 Aligned_cols=196 Identities=18% Similarity=0.275 Sum_probs=164.2
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---C--------HHHHHHHHHHHhhcCCCCcccceeEEEecC
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---K--------TEAYLLELDFFSKVSHARLVPLLGHCMERE 602 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~--------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~ 602 (766)
+|...+.||+|+||.||+|.. .+|+.||+|.++.... . .+.+.+|++++++++||||+++++++.. .
T Consensus 2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~ 80 (272)
T cd06629 2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETT-E 80 (272)
T ss_pred ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEecc-C
Confidence 366778999999999999984 5789999998854211 0 2468889999999999999999997765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
+..++||||+++|+|.+++++.. .+++..+..++.|++.||.|||+. +++||||||+||++++++.+|++
T Consensus 81 ~~~~lv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~ 150 (272)
T cd06629 81 EYLSIFLEYVPGGSIGSCLRTYG-------RFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKIS 150 (272)
T ss_pred CceEEEEecCCCCcHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEe
Confidence 68999999999999999997543 389999999999999999999997 99999999999999999999999
Q ss_pred cchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 683 SLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 683 DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|||+++..... .....++..|+|||.......+ ++.++|||||||++||+++|+.||..
T Consensus 151 d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~-------~~~~~Dv~slG~~l~~l~~g~~p~~~ 214 (272)
T cd06629 151 DFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQG-------YSAKVDIWSLGCVVLEMFAGRRPWSD 214 (272)
T ss_pred eccccccccccccccccccccCCccccCHHHhccccCC-------CCccchhHHHHHHHHHHHhCCCCCcC
Confidence 99998764322 1223567889999986544321 47899999999999999999999854
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=278.71 Aligned_cols=201 Identities=19% Similarity=0.212 Sum_probs=163.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcC-CCCcccceeEEEecCC----c
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVS-HARLVPLLGHCMEREN----E 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~----~ 604 (766)
++|+..+.||+|+||.||+|.. .+++.||||+++..... .+.+.+|++++++++ ||||+++++++...+. .
T Consensus 1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~ 80 (295)
T cd07837 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS 80 (295)
T ss_pred CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence 4688899999999999999995 57899999998654322 457889999999995 6999999997765322 2
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEecc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGS 683 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~D 683 (766)
.|+||||+++ +|.+++...... ....+++.++..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|
T Consensus 81 ~~lv~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~d 154 (295)
T cd07837 81 LYLVFEYLDS-DLKKFMDSNGRG--PGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIAD 154 (295)
T ss_pred EEEEeeccCc-CHHHHHHHhccc--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEee
Confidence 7999999985 899988754321 123589999999999999999999997 9999999999999998 89999999
Q ss_pred chhhhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++.... ......++..|+|||.+..... ++.++|||||||++|||+||+.||..
T Consensus 155 fg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Di~slG~~l~~l~~g~~~~~~ 214 (295)
T cd07837 155 LGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTH--------YSTPVDIWSVGCIFAEMSRKQPLFPG 214 (295)
T ss_pred cccceecCCCccccCCcccccCCCChHHhhCCCC--------CCchHHHHHHHHHHHHHHcCCCCCCC
Confidence 999875422 1223356788999998753221 47899999999999999999999854
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=271.98 Aligned_cols=197 Identities=24% Similarity=0.407 Sum_probs=164.8
Q ss_pred ceeecCCcceEEEEEEcC----CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.||+|+||.||+|.... +..||+|.+...... .+.+.+|++++++++|+||+++++++.. ....++||||++
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~ 79 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-EEPLYLVLEYME 79 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-CCceEEEEEecc
Confidence 479999999999999543 889999999765443 5689999999999999999999998776 668999999999
Q ss_pred CCChhhhhhccCCC--CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 614 NGDLSSSLYRKTNT--EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 614 ~GsL~~~l~~~~~~--~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+|+|.+++...... ......++|.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.++...
T Consensus 80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~ 156 (262)
T cd00192 80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVY 156 (262)
T ss_pred CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEcccccccccc
Confidence 99999999764210 00113589999999999999999999997 99999999999999999999999999998764
Q ss_pred CC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 692 GD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 692 ~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.. .....++..|+|||...... ++.++||||+||++|||++ |+.||...
T Consensus 157 ~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 211 (262)
T cd00192 157 DDDYYRKKTGGKLPIRWMAPESLKDGI---------FTSKSDVWSFGVLLWEIFTLGATPYPGL 211 (262)
T ss_pred cccccccccCCCcCccccCHHHhccCC---------cchhhccHHHHHHHHHHHhcCCCCCCCC
Confidence 32 23345677899999775542 5789999999999999999 69998544
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=272.55 Aligned_cols=198 Identities=19% Similarity=0.237 Sum_probs=167.3
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||++.. .+|+.||+|++..... ..+++.+|++++++++||||+++++++.+ .+..++|||
T Consensus 1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e 79 (256)
T cd08218 1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-NGNLYIVMD 79 (256)
T ss_pred CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-CCeEEEEEe
Confidence 478889999999999999984 5789999999875432 24579999999999999999999997655 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++..... ..+++.++..++.|++.|++|||+. +++|+||||+||+++.++.+||+|||++...
T Consensus 80 ~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~ 151 (256)
T cd08218 80 YCEGGDLYKKINAQRG-----VLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVL 151 (256)
T ss_pred cCCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeec
Confidence 9999999999875432 2478999999999999999999987 9999999999999999999999999999765
Q ss_pred CCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.... ....++..|+|||...... .+.++|||||||+++||+||+.||...+
T Consensus 152 ~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~~Dv~slG~i~~~l~~g~~~~~~~~ 205 (256)
T cd08218 152 NSTVELARTCIGTPYYLSPEICENRP---------YNNKSDIWALGCVLYEMCTLKHAFEAGN 205 (256)
T ss_pred CcchhhhhhccCCccccCHHHhCCCC---------CCCccchhHHHHHHHHHHcCCCCccCCC
Confidence 3321 2234677899999875433 4789999999999999999999986443
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=266.59 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=165.1
Q ss_pred HhCCCCcc-ceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEe---cCCcE
Q 004248 532 ATGDFSDA-NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCME---RENEK 605 (766)
Q Consensus 532 ~~~~~~~~-~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~---~~~~~ 605 (766)
.+++|... ++||-|-.|+|..+. ..+|+.+|+|.+... +..++|+++--.. .|||||+++++|.. ....+
T Consensus 59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcL 134 (400)
T KOG0604|consen 59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCL 134 (400)
T ss_pred chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceee
Confidence 45566543 689999999999998 678999999998533 4567889876555 69999999997743 23467
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~ 682 (766)
.+|||.|+||+|+..+..++. +++++.+.-.|+.||+.|+.|||+. .|.||||||+|+|... |-..|++
T Consensus 135 LiVmE~meGGeLfsriq~~g~-----~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLt 206 (400)
T KOG0604|consen 135 LIVMECMEGGELFSRIQDRGD-----QAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLT 206 (400)
T ss_pred EeeeecccchHHHHHHHHccc-----ccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEec
Confidence 899999999999999987654 5699999999999999999999998 9999999999999974 4569999
Q ss_pred cchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 683 SLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 683 DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|||+|+... ....+-+.|++|.|||+.....| +..+|+||+||++|-|+.|.+||.+
T Consensus 207 DfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKy---------dkscdmwSlgVimYIlLCGyPPFYS 265 (400)
T KOG0604|consen 207 DFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKY---------DKSCDMWSLGVIMYILLCGYPPFYS 265 (400)
T ss_pred ccccccccCCCccccCCcccccccCHHHhCchhc---------CCCCCccchhHHHHHhhcCCCcccc
Confidence 999999764 44556678999999999877664 6789999999999999999999953
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=282.26 Aligned_cols=191 Identities=25% Similarity=0.371 Sum_probs=162.5
Q ss_pred CccceeecCCcceEEEEEEc---C--CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 537 SDANLIKNGHSGDLFRGILE---G--GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~---~--g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
...++||+|-||.||+|... . ...||||.-+.+... .+.|++|.-+|++++|||||+++|+|.+ ...|+||
T Consensus 392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e--~P~Wivm 469 (974)
T KOG4257|consen 392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE--QPMWIVM 469 (974)
T ss_pred cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec--cceeEEE
Confidence 34578999999999999832 2 346899987664433 7789999999999999999999999975 5799999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|.++-|.|..+|..++. .++......++.||+.||+|||+. ++|||||.++|||+.+.--+|++|||++|.
T Consensus 470 EL~~~GELr~yLq~nk~------sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~ 540 (974)
T KOG4257|consen 470 ELAPLGELREYLQQNKD------SLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRY 540 (974)
T ss_pred ecccchhHHHHHHhccc------cchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhh
Confidence 99999999999986553 488999999999999999999998 999999999999999999999999999998
Q ss_pred cCCCC--cccee--eecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 690 QGGDA--HQSRI--TRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 690 ~~~~~--~~~~~--t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
..++. +.+.+ -.-|||||.+.... +|+++|||-|||.+||++. |.+||.
T Consensus 541 ~ed~~yYkaS~~kLPIKWmaPESINfRr---------FTtASDVWMFgVCmWEIl~lGvkPfq 594 (974)
T KOG4257|consen 541 LEDDAYYKASRGKLPIKWMAPESINFRR---------FTTASDVWMFGVCMWEILSLGVKPFQ 594 (974)
T ss_pred ccccchhhccccccceeecCccccchhc---------ccchhhHHHHHHHHHHHHHhcCCccc
Confidence 75432 22222 33589999886544 6899999999999999876 999994
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=285.03 Aligned_cols=195 Identities=17% Similarity=0.247 Sum_probs=163.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC-----Cc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE-----NE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~~ 604 (766)
++|...+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++||||+++++++.... ..
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 94 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD 94 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence 7899999999999999999994 5789999999864321 2456889999999999999999999775421 24
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.++|+||+.. +|.++.. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 95 ~~lv~e~~~~-~l~~~~~---------~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~df 161 (342)
T cd07879 95 FYLVMPYMQT-DLQKIMG---------HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDF 161 (342)
T ss_pred EEEEeccccc-CHHHHHc---------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeC
Confidence 6999999974 7776552 1388999999999999999999997 8999999999999999999999999
Q ss_pred hhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 685 SEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+++..........++..|+|||....... ++.++|||||||++|||++|+.||...
T Consensus 162 g~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slGvil~el~~g~~pf~~~ 218 (342)
T cd07879 162 GLARHADAEMTGYVVTRWYRAPEVILNWMH--------YNQTVDIWSVGCIMAEMLTGKTLFKGK 218 (342)
T ss_pred CCCcCCCCCCCCceeeecccChhhhcCccc--------cCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999876555555677889999998754221 478999999999999999999999644
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=276.03 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=166.0
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcC---CCCcccceeEEEecCCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVS---HARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~~~~~~lV 608 (766)
.|+..+.||+|+||.||+|.. .+++.||+|.++.... ..+++.+|++++++++ |||++++++++.. +...++|
T Consensus 2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-~~~~~lv 80 (277)
T cd06917 2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-GPRLWII 80 (277)
T ss_pred hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-CCEEEEE
Confidence 477788999999999999994 6789999999865432 2457889999999997 9999999998765 5679999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++++|.+++... .+++.....++.|++.||.|||+. +|+||||||+||++++++.+||+|||++.
T Consensus 81 ~e~~~~~~L~~~~~~~--------~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~ 149 (277)
T cd06917 81 MEYAEGGSVRTLMKAG--------PIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAA 149 (277)
T ss_pred EecCCCCcHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCcee
Confidence 9999999999998542 389999999999999999999987 99999999999999999999999999987
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
..... .....++..|+|||....+.. ++.++|||||||++|||++|+.||...+
T Consensus 150 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~~l~~ll~g~~p~~~~~ 206 (277)
T cd06917 150 LLNQNSSKRSTFVGTPYWMAPEVITEGKY--------YDTKADIWSLGITIYEMATGNPPYSDVD 206 (277)
T ss_pred ecCCCccccccccCCcceeCHHHhccCCc--------cccchhHHHHHHHHHHHHhCCCCCCCCC
Confidence 65322 223457788999998654322 4789999999999999999999996443
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=280.42 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=165.0
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~l 607 (766)
.++|+..+.||+|+||.||+|+. .+|+.||+|+++..... ...+.+|++++++++|+||+++++++.... +..++
T Consensus 6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 85 (309)
T cd07845 6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL 85 (309)
T ss_pred ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence 46789999999999999999995 56999999998754322 335678999999999999999999876532 45899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||++ ++|.+++.... ..++|.++..++.|++.||+|||+. +++||||||+||++++++.+||+|||++
T Consensus 86 v~e~~~-~~l~~~l~~~~------~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~ 155 (309)
T cd07845 86 VMEYCE-QDLASLLDNMP------TPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLA 155 (309)
T ss_pred EEecCC-CCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcccee
Confidence 999997 48988886532 2489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+..... .....++..|+|||....... ++.++||||+||++|||++|+.||..
T Consensus 156 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DvwslG~il~el~~g~~~f~~ 211 (309)
T cd07845 156 RTYGLPAKPMTPKVVTLWYRAPELLLGCTT--------YTTAIDMWAVGCILAELLAHKPLLPG 211 (309)
T ss_pred eecCCccCCCCcccccccccChhhhcCCCC--------cCchHHHHHHHHHHHHHHhCCCCCCC
Confidence 865322 223345778999998754321 47899999999999999999999854
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=270.26 Aligned_cols=198 Identities=20% Similarity=0.246 Sum_probs=166.8
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||+|.. .+++.+|||++..... ..+.+.+|++++++++||||+++++.+.. ++..++|||
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e 79 (256)
T cd08220 1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-DKALMIVME 79 (256)
T ss_pred CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-CCEEEEEEe
Confidence 477889999999999999984 5788999999975432 25678999999999999999999997654 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFG~a~~ 689 (766)
|+++|+|.+++.+... ..+++..+..++.|++.|++|||+. +|+||||||+||+++++ +.+|++|||.++.
T Consensus 80 ~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~ 151 (256)
T cd08220 80 YAPGGTLAEYIQKRCN-----SLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKI 151 (256)
T ss_pred cCCCCCHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCcee
Confidence 9999999999976432 3489999999999999999999997 99999999999999865 5689999999986
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.... .....++..|+|||...... .+.++|||||||++|||++|+.||...+
T Consensus 152 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~~l~~l~~~~~~~~~~~ 205 (256)
T cd08220 152 LSSKSKAYTVVGTPCYISPELCEGKP---------YNQKSDIWALGCVLYELASLKRAFEAAN 205 (256)
T ss_pred cCCCccccccccCCcccCchhccCCC---------CCcccchHHHHHHHHHHHhCCCCcccCc
Confidence 6432 22345678899999876433 4789999999999999999999996543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=279.09 Aligned_cols=197 Identities=18% Similarity=0.267 Sum_probs=165.6
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~lV 608 (766)
++|+..+.||+|+||.||+|... +++.||+|.++..... ...+.+|++++++++||||+++++++...+ +..|+|
T Consensus 5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv 84 (293)
T cd07843 5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV 84 (293)
T ss_pred hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence 46888899999999999999964 6889999999754322 346788999999999999999999876532 679999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||++ ++|.+++..... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++
T Consensus 85 ~e~~~-~~L~~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~ 154 (293)
T cd07843 85 MEYVE-HDLKSLMETMKQ------PFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAR 154 (293)
T ss_pred ehhcC-cCHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCcee
Confidence 99998 599998875432 489999999999999999999997 99999999999999999999999999988
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... .....++..|+|||....... .+.++||||+||++|||++|+.||..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Di~slG~~l~~l~~g~~~f~~ 209 (293)
T cd07843 155 EYGSPLKPYTQLVVTLWYRAPELLLGAKE--------YSTAIDMWSVGCIFAELLTKKPLFPG 209 (293)
T ss_pred eccCCccccccccccccccCchhhcCCcc--------ccchhhHHHHHHHHHHHHhCCCCCCC
Confidence 65332 233456788999998754322 46899999999999999999999853
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=277.55 Aligned_cols=196 Identities=16% Similarity=0.173 Sum_probs=165.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|.. .+++.||||+++.... ..+.+.+|++++++++|+||+++++++.. ++..++||
T Consensus 1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~iv~ 79 (288)
T cd07833 1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-KGRLYLVF 79 (288)
T ss_pred CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-CCEEEEEE
Confidence 3688899999999999999995 4688999999865322 25679999999999999999999998866 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++++.+..+..+.. .+++.++..++.||+.||+|||+. +|+||||||+||++++++.+||+|||++..
T Consensus 80 e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~ 149 (288)
T cd07833 80 EYVERTLLELLEASPG-------GLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARA 149 (288)
T ss_pred ecCCCCHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccc
Confidence 9999877766554332 389999999999999999999997 999999999999999999999999999876
Q ss_pred cCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||....... ++.++|||||||++|||++|+.||..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~--------~~~~~Dv~slG~~l~~l~~g~~~~~~ 204 (288)
T cd07833 150 LRARPASPLTDYVATRWYRAPELLVGDTN--------YGKPVDVWAIGCIMAELLDGEPLFPG 204 (288)
T ss_pred cCCCccccccCcccccCCcCCchhcCCCC--------cCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 5332 233456888999998765421 57899999999999999999998853
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=276.09 Aligned_cols=198 Identities=21% Similarity=0.300 Sum_probs=165.9
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+|+..+.||+|++|.||+|+. .+|+.||||+++.... ..+.+.+|++++++++||||+++++++.. .+..++||||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~ 79 (284)
T cd07836 1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHT-ENKLMLVFEY 79 (284)
T ss_pred CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEee-CCcEEEEEec
Confidence 478889999999999999995 5689999999875433 24678899999999999999999998776 5678999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++ +|.+++..... ...+++.++..++.|++.||+|||+. +|+||||||+||++++++.+|++|||+++...
T Consensus 80 ~~~-~l~~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~ 151 (284)
T cd07836 80 MDK-DLKKYMDTHGV----RGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFG 151 (284)
T ss_pred CCc-cHHHHHHhcCC----CCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhc
Confidence 984 89998865432 13489999999999999999999987 99999999999999999999999999997653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|++||....... ++.++|||||||++|||++|+.||...
T Consensus 152 ~~~~~~~~~~~~~~y~~PE~~~~~~~--------~~~~~Dv~slG~~l~~l~~g~~~~~~~ 204 (284)
T cd07836 152 IPVNTFSNEVVTLWYRAPDVLLGSRT--------YSTSIDIWSVGCIMAEMITGRPLFPGT 204 (284)
T ss_pred CCccccccccccccccChHHhcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 22 123456788999997654321 468999999999999999999998644
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=284.89 Aligned_cols=196 Identities=19% Similarity=0.263 Sum_probs=162.8
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecC----CcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERE----NEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~ 605 (766)
+++|+..+.||+|+||.||+|+ ..+|+.||||++..... ...++.+|+.++++++||||+++++++.... ...
T Consensus 4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 83 (336)
T cd07849 4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV 83 (336)
T ss_pred ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence 4679999999999999999998 46789999999864322 2457889999999999999999999765422 357
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+|+||+++ +|.+++..+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 84 ~lv~e~~~~-~l~~~~~~~--------~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg 151 (336)
T cd07849 84 YIVQELMET-DLYKLIKTQ--------HLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFG 151 (336)
T ss_pred EEEehhccc-CHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECccc
Confidence 999999974 888877532 389999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 686 EVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+++..... .....++..|+|||.+..... ++.++||||+||++|||+||+.||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DvwslGvil~el~~G~~~f~~ 212 (336)
T cd07849 152 LARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKG--------YTKAIDIWSVGCILAEMLSNRPLFPG 212 (336)
T ss_pred ceeeccccccccCCcCCcCcCCCccChHHhhCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 98765321 122457888999997643221 47899999999999999999999954
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=271.51 Aligned_cols=200 Identities=21% Similarity=0.250 Sum_probs=168.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|.. .++..||+|++..... ..+.+.+|+++++.++|+||+++++.+.. ++..++|||
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~iv~e 79 (267)
T cd06610 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVV-GDELWLVMP 79 (267)
T ss_pred CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEee-CCEEEEEEe
Confidence 4788899999999999999994 5688999999865433 35679999999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.++++.... ...+++.....++.|++.||+|||+. +|+||||||+||++++++.+||+|||++...
T Consensus 80 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~ 152 (267)
T cd06610 80 YLSGGSLLDIMKSSYP----RGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASL 152 (267)
T ss_pred ccCCCcHHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHh
Confidence 9999999999975321 12489999999999999999999987 9999999999999999999999999998765
Q ss_pred CCCC-------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDA-------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~-------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ....++..|++||....... .+.++|||||||++|||++|+.||...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~--------~~~~~Dv~slG~i~~~l~~g~~p~~~~ 210 (267)
T cd06610 153 ADGGDRTRKVRKTFVGTPCWMAPEVMEQVHG--------YDFKADIWSFGITAIELATGAAPYSKY 210 (267)
T ss_pred ccCccccccccccccCChhhcChHHHccccC--------cCcccchHhHhHHHHHHHhCCCCcccc
Confidence 3221 22357788999998755421 578999999999999999999999643
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=275.14 Aligned_cols=191 Identities=21% Similarity=0.218 Sum_probs=161.0
Q ss_pred eecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||+||+|. ..+|+.||+|.+..... ..+.+.+|++++++++||||+++++++.. .+..|+||||+++|+
T Consensus 1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~ 79 (277)
T cd05577 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFET-KDDLCLVMTLMNGGD 79 (277)
T ss_pred CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEec-CCeEEEEEecCCCCc
Confidence 6899999999998 45689999999865432 24467889999999999999999987654 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC--CC
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG--DA 694 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~--~~ 694 (766)
|.+++.+... ..+++.++..++.|++.||.|||+. +++||||||+||++++++.+||+|||.+..... ..
T Consensus 80 L~~~l~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~ 151 (277)
T cd05577 80 LKYHIYNVGE-----PGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKI 151 (277)
T ss_pred HHHHHHHcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCcc
Confidence 9999976542 3489999999999999999999997 999999999999999999999999999876532 22
Q ss_pred ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 695 ~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
....++..|++||...... ++.++||||+||++|||++|+.||....
T Consensus 152 ~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~~ 198 (277)
T cd05577 152 KGRAGTPGYMAPEVLQGEV---------YDFSVDWFALGCTLYEMIAGRSPFRQRK 198 (277)
T ss_pred ccccCCCCcCCHHHhcCCC---------CCchhhhHHHHHHHHHHhhCCCCCCCCc
Confidence 2345677899999876544 3679999999999999999999995443
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=276.48 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=163.6
Q ss_pred CCCccceeecCCcceEEEEEE----cCCcEEEEEEeecccc-----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 535 DFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
+|+..+.||+|+||.||+|.. .+|+.||+|++..... ..+++.+|+++++++ +|+||+++++.+.. +..
T Consensus 1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~-~~~ 79 (290)
T cd05613 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-DTK 79 (290)
T ss_pred CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec-CCe
Confidence 467789999999999999985 4689999999865321 246788999999999 59999999986544 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+||||+++|+|.+++.... .+++.+...++.|+++||+|||+. +++||||||+||++++++.+||+||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~df 149 (290)
T cd05613 80 LHLILDYINGGELFTHLSQRE-------RFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDF 149 (290)
T ss_pred EEEEEecCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeC
Confidence 899999999999999997543 378899999999999999999997 9999999999999999999999999
Q ss_pred hhhhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 685 SEVCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 685 G~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
|+++..... .....++..|+|||.......+ .+.++|||||||++|||+||+.||.
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~Dv~slG~~l~~ll~g~~p~~ 209 (290)
T cd05613 150 GLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGG-------HDKAVDWWSMGVLMYELLTGASPFT 209 (290)
T ss_pred ccceecccccccccccccCCcccCChhhccCCCCC-------CCccccHHHHHHHHHHHhcCCCCCC
Confidence 998765321 1234578899999987543222 4678999999999999999999985
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=273.31 Aligned_cols=196 Identities=22% Similarity=0.342 Sum_probs=161.5
Q ss_pred CCCCccceeecCCcceEEEEEEcC----CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|...+.||+|+||.||+|...+ ...||||....... ..+.+.+|+.++++++||||+++++++.. +..++
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~--~~~~l 83 (270)
T cd05056 6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE--NPVWI 83 (270)
T ss_pred hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC--CCcEE
Confidence 357778999999999999998532 35799998865432 25679999999999999999999997754 46899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.. ..++|.++..++.|++.||+|||+. +++||||||+||+++.++.+|++|||++
T Consensus 84 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~ 154 (270)
T cd05056 84 VMELAPLGELRSYLQVNK------YSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLS 154 (270)
T ss_pred EEEcCCCCcHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCcee
Confidence 999999999999997543 2489999999999999999999987 9999999999999999999999999998
Q ss_pred hhcCCCC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGDA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+...... ....++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~pf~~~ 212 (270)
T cd05056 155 RYLEDESYYKASKGKLPIKWMAPESINFRR---------FTSASDVWMFGVCMWEILMLGVKPFQGV 212 (270)
T ss_pred eecccccceecCCCCccccccChhhhccCC---------CCchhhhHHHHHHHHHHHHcCCCCCCCC
Confidence 7653221 1122335799999765433 4789999999999999996 99999544
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=282.20 Aligned_cols=203 Identities=14% Similarity=0.247 Sum_probs=163.6
Q ss_pred CCCCccceeecCCcceEEEEEEc--------CCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
.+|...+.||+|+||.||+|... .+..||+|.++..... .+++.+|+++++++ +||||++++++|.. +
T Consensus 12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~ 90 (334)
T cd05100 12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-D 90 (334)
T ss_pred hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc-C
Confidence 35788899999999999999732 1247999988643322 46799999999999 79999999998865 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..++||||+++|+|.+++.+..... .....++|.++..++.|++.||+|||+. +|+||||||+||++
T Consensus 91 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill 167 (334)
T cd05100 91 GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLV 167 (334)
T ss_pred CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEE
Confidence 67999999999999999997543110 1123589999999999999999999997 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
++++.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||++ |+.||.
T Consensus 168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~ 238 (334)
T cd05100 168 TEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRV---------YTHQSDVWSFGVLLWEIFTLGGSPYP 238 (334)
T ss_pred cCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCC---------cCchhhhHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999765321 11122345799999875543 4679999999999999998 888885
Q ss_pred CC
Q 004248 748 SS 749 (766)
Q Consensus 748 ~~ 749 (766)
..
T Consensus 239 ~~ 240 (334)
T cd05100 239 GI 240 (334)
T ss_pred CC
Confidence 43
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=276.67 Aligned_cols=201 Identities=20% Similarity=0.226 Sum_probs=167.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~lV~ 609 (766)
++|+..+.||.|++|.||+|.. .+++.||+|.+..... ..+++.+|++++++++||||++++++|... .+..++||
T Consensus 1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 80 (287)
T cd06621 1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM 80 (287)
T ss_pred CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence 4678889999999999999996 5689999999875433 256799999999999999999999987643 34689999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++..... ....+++.....++.|++.||+|||+. +++||||+|+||++++++.+||+|||++..
T Consensus 81 e~~~~~~L~~~l~~~~~---~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~ 154 (287)
T cd06621 81 EYCEGGSLDSIYKKVKK---RGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGE 154 (287)
T ss_pred EecCCCCHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeecccccc
Confidence 99999999998764221 123488999999999999999999997 999999999999999999999999999875
Q ss_pred cCCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....++..|++||...... ++.++||||+||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~~~~y~~pE~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 206 (287)
T cd06621 155 LVNSLAGTFTGTSFYMAPERIQGKP---------YSITSDVWSLGLTLLEVAQNRFPFPPE 206 (287)
T ss_pred ccccccccccCCccccCHHHhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence 4322 22345677899999875443 478999999999999999999999644
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=273.44 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=167.7
Q ss_pred CCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+|+..++||+|+||.||+|... +++.||+|.+..... ..+.+.+|++++++++||||+++++++.+ ++..++|+
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~ 79 (258)
T cd05578 1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD-EENMYLVV 79 (258)
T ss_pred CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcC-CCeEEEEE
Confidence 4778899999999999999964 689999999975432 24678999999999999999999986654 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|.+++.... .+++.++..++.|+++||.|||+. +++|+||||+||++++++.+||+|||.+..
T Consensus 80 e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~ 149 (258)
T cd05578 80 DLLLGGDLRYHLSQKV-------KFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATK 149 (258)
T ss_pred eCCCCCCHHHHHHhcC-------CcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccc
Confidence 9999999999997542 488999999999999999999987 999999999999999999999999999876
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.... .....++..|++||...... .+.++|||||||++|||++|+.||....
T Consensus 150 ~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~~l~~l~~g~~p~~~~~ 203 (258)
T cd05578 150 VTPDTLTTSTSGTPGYMAPEVLCRQG---------YSVAVDWWSLGVTAYECLRGKRPYRGHS 203 (258)
T ss_pred cCCCccccccCCChhhcCHHHHcccC---------CCCcccchhhHHHHHHHHhCCCCCCCCC
Confidence 5322 23345678899999875443 4689999999999999999999996544
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=274.07 Aligned_cols=197 Identities=21% Similarity=0.258 Sum_probs=168.4
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|... +++.||+|++..... ..+++.+|++++++++||||+++++++.. ++..++|+|
T Consensus 1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e 79 (265)
T cd06605 1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYN-NGDISICME 79 (265)
T ss_pred CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeec-CCEEEEEEE
Confidence 46778899999999999999954 689999999876533 25679999999999999999999998776 578999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|+++++|.+++.... ..+++.....++.|++.|++|||+ . +++||||||+||++++++.+||+|||.+..
T Consensus 80 ~~~~~~L~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~ 150 (265)
T cd06605 80 YMDGGSLDKILKEVQ------GRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQ 150 (265)
T ss_pred ecCCCcHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchh
Confidence 999999999997542 248899999999999999999998 6 999999999999999999999999999876
Q ss_pred cCCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....++..|++||...... ++.++|||||||++|||++|+.||...
T Consensus 151 ~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Dv~slG~~l~~l~~g~~p~~~~ 202 (265)
T cd06605 151 LVNSLAKTFVGTSSYMAPERIQGND---------YSVKSDIWSLGLSLIELATGRFPYPPE 202 (265)
T ss_pred hHHHHhhcccCChhccCHHHHcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence 5221 12255778899999875543 578999999999999999999999654
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=274.22 Aligned_cols=202 Identities=21% Similarity=0.331 Sum_probs=165.5
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|+.. +.+.||+|.+...... .+++.+|++++++++||||+++++++.+ .+..
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~ 83 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCRE-AEPH 83 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECC-CCcc
Confidence 46888899999999999999853 3468999988654433 4679999999999999999999997765 5678
Q ss_pred EEEEeeCCCCChhhhhhccCCCC--CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTE--DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~--~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
++||||+++|+|.+++....... .....++|.++..++.|++.||+|||+. +|+||||||+||++++++.+|++|
T Consensus 84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~ 160 (275)
T cd05046 84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSL 160 (275)
T ss_pred eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEcc
Confidence 99999999999999997544211 1112589999999999999999999987 899999999999999999999999
Q ss_pred chhhhhcCC----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 684 LSEVCAQGG----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
||+++.... ......++..|++||...... .+.++|||||||++|||++ |..||..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~~l~~l~~~~~~p~~~ 221 (275)
T cd05046 161 LSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDD---------FSTKSDVWSFGVLMWEVFTQGELPFYG 221 (275)
T ss_pred cccccccCcccccccCCceeEEeecChhhhccCC---------CCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 999865421 122334567799999875443 3678999999999999999 7888843
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=270.50 Aligned_cols=196 Identities=21% Similarity=0.270 Sum_probs=169.8
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|++|.||+|+.. +++.||||++..... ..+.+.+|++.+.+++||||+++++++.. .+..++|||
T Consensus 1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e 79 (264)
T cd06623 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYK-EGEISIVLE 79 (264)
T ss_pred CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcc-CCeEEEEEE
Confidence 36888899999999999999965 599999999876543 25689999999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|+++++|.+++.... .+++..+..++.|+++|++|||+ . +++||||||+||+++.++.+||+|||.+..
T Consensus 80 ~~~~~~L~~~l~~~~-------~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~ 149 (264)
T cd06623 80 YMDGGSLADLLKKVG-------KIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKV 149 (264)
T ss_pred ecCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCcccee
Confidence 999999999997543 38999999999999999999998 7 999999999999999999999999999876
Q ss_pred cCCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ....++..|+|||...... ++.++||||||+++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~y~~pE~~~~~~---------~~~~~Dv~slG~il~~l~tg~~p~~~~ 203 (264)
T cd06623 150 LENTLDQCNTFVGTVTYMSPERIQGES---------YSYAADIWSLGLTLLECALGKFPFLPP 203 (264)
T ss_pred cccCCCcccceeecccccCHhhhCCCC---------CCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 53221 2345778899999876543 578999999999999999999999654
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=272.57 Aligned_cols=195 Identities=16% Similarity=0.261 Sum_probs=164.5
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc-------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV-------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~-------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
+|+..+.||+|+||.||+|. ..+++.||+|.+..... ..+++.+|++++++++||||+++++++.+ .+..+
T Consensus 1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~ 79 (268)
T cd06630 1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCE-DSHFN 79 (268)
T ss_pred CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceecc-CCeEE
Confidence 47778999999999999998 46789999999864331 13578999999999999999999998765 56799
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccch
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLS 685 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG 685 (766)
+||||+++++|.+++.+.+ .+++..+..++.|++.||+|||+. +++||||||+||+++.++ .+||+|||
T Consensus 80 ~v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg 149 (268)
T cd06630 80 LFVEWMAGGSVSHLLSKYG-------AFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFG 149 (268)
T ss_pred EEEeccCCCcHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccc
Confidence 9999999999999997543 388999999999999999999998 999999999999998776 59999999
Q ss_pred hhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+...... .....++..|+|||...... ++.++||||+||++|||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~---------~~~~~Dv~slG~~l~~l~~g~~p~~~~ 211 (268)
T cd06630 150 AAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQ---------YGRSCDVWSVGCVIIEMATAKPPWNAE 211 (268)
T ss_pred cccccccccccCCccccccccccceeCHhHhccCC---------CCcccchHHHHHHHHHHHhCCCCCCCC
Confidence 98765321 11235677899999875433 468999999999999999999999543
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=270.27 Aligned_cols=198 Identities=20% Similarity=0.264 Sum_probs=167.5
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||+|.. .+++.||+|.++.... ..+.+.+|++++++++|+||+++++++.. .+..++|+|
T Consensus 1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-~~~~~lv~e 79 (264)
T cd06626 1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVH-REKVYIFME 79 (264)
T ss_pred CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEec-CCEEEEEEe
Confidence 477789999999999999985 5789999999976544 25678999999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++...
T Consensus 80 ~~~~~~L~~~~~~~~-------~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~ 149 (264)
T cd06626 80 YCSGGTLEELLEHGR-------ILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKL 149 (264)
T ss_pred cCCCCcHHHHHhhcC-------CCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccccccccc
Confidence 999999999997543 378999999999999999999997 9999999999999999999999999998765
Q ss_pred CCCCc-------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDAH-------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~~-------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ...++..|++||........ ..+.++|||||||+++||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~------~~~~~~Dv~s~G~il~~l~~g~~pf~~~ 209 (264)
T cd06626 150 KNNTTTMGEEVQSLAGTPAYMAPEVITGGKGK------GHGRAADIWSLGCVVLEMATGKRPWSEL 209 (264)
T ss_pred CCCCCcccccccCCcCCcCccChhhccCCCCC------CCCcccchHHHHHHHHHHHhCCCCccCC
Confidence 32211 23467789999987654311 1478999999999999999999999644
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=282.35 Aligned_cols=202 Identities=18% Similarity=0.211 Sum_probs=169.7
Q ss_pred HHHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 528 QLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 528 ~l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
++...+++|+..+.||+|+||.||+|. ..+++.||||++..... ..+.+.+|++++++++||||+++++++....+
T Consensus 4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 83 (328)
T cd07856 4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE 83 (328)
T ss_pred ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence 344577889999999999999999998 45799999998854321 24678899999999999999999998765456
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+|+||+. ++|.+++... .+++.....++.|++.||+|||+. +|+||||||+||++++++.+||+|
T Consensus 84 ~~~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~d 151 (328)
T cd07856 84 DIYFVTELLG-TDLHRLLTSR--------PLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICD 151 (328)
T ss_pred cEEEEeehhc-cCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCc
Confidence 7899999994 6898888532 378888889999999999999997 999999999999999999999999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||.++..........++..|+|||.+..+.. ++.++|||||||++|||+||+.||...
T Consensus 152 fg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~il~el~tg~~~f~~~ 209 (328)
T cd07856 152 FGLARIQDPQMTGYVSTRYYRAPEIMLTWQK--------YDVEVDIWSAGCIFAEMLEGKPLFPGK 209 (328)
T ss_pred cccccccCCCcCCCcccccccCceeeeccCC--------cCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9999866544455567888999998644221 478999999999999999999998543
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=274.72 Aligned_cols=196 Identities=22% Similarity=0.356 Sum_probs=159.3
Q ss_pred ceeecCCcceEEEEEEcC-------CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 540 NLIKNGHSGDLFRGILEG-------GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~-------g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+.||+|+||.||+|+..+ ++.||||.+..... ...+|.+|++++++++||||++++++|.. .+..++|||
T Consensus 1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e 79 (269)
T cd05044 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLL-NEPQYIIME 79 (269)
T ss_pred CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecC-CCCeEEEEe
Confidence 468999999999998532 36899998865432 25679999999999999999999998865 467999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-----cEEeccch
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-----EVRLGSLS 685 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-----~~kl~DFG 685 (766)
|+++|+|.++++...........++|.++..++.|++.||+|||+. +++||||||+||+++.+. .+|++|||
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg 156 (269)
T cd05044 80 LMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFG 156 (269)
T ss_pred ccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCcc
Confidence 9999999999975432111223489999999999999999999987 899999999999999877 89999999
Q ss_pred hhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 686 EVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+++..... ......+..|+|||....+. ++.++|||||||++|||+| |+.||..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~ellt~g~~p~~~ 216 (269)
T cd05044 157 LARDIYKSDYYRKEGEGLLPVRWMAPESLLDGK---------FTTQSDVWSFGVLMWEILTLGQQPYPA 216 (269)
T ss_pred cccccccccccccCcccCCCccccCHHHHccCC---------cccchhHHHHHHHHHHHHHcCCCCCcc
Confidence 98754211 11223456799999876544 4789999999999999998 9999853
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=280.25 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=170.2
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.|++.+.||+||.++||++...+.+.+|+|++...... ...|.+|++.|.+++ |.+||++++|-.. ++.+|+|||
T Consensus 362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-d~~lYmvmE 440 (677)
T KOG0596|consen 362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-DGYLYMVME 440 (677)
T ss_pred hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-CceEEEEee
Confidence 47888999999999999999988899999988654333 567999999999995 9999999997665 678999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|-+- ||..+|.++.. ...+| .++.|-.|++.|+.++|.+ +|||.||||.|.|+- +|.+||+|||+|..+
T Consensus 441 ~Gd~-DL~kiL~k~~~-----~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI 509 (677)
T KOG0596|consen 441 CGDI-DLNKILKKKKS-----IDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLV-KGRLKLIDFGIANAI 509 (677)
T ss_pred cccc-cHHHHHHhccC-----CCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEE-eeeEEeeeechhccc
Confidence 9874 99999987654 23456 6788999999999999998 999999999999986 579999999999988
Q ss_pred CCCCc-----cceeeecccCCCCCCCCceeeee--eeeecccccceecchHHHHHHhcCCCCCC
Q 004248 691 GGDAH-----QSRITRLLRLPQSSEQGSSGMVI--YLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 691 ~~~~~-----~~~~t~~y~aPe~~~~~~~g~~~--~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
..+++ ..+||..||+||.+....++... -.++++.++||||+|||||+|+.||.||.
T Consensus 510 ~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~ 573 (677)
T KOG0596|consen 510 QPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFG 573 (677)
T ss_pred CccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchH
Confidence 65543 46899999999977654443222 35678999999999999999999999994
|
|
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=267.91 Aligned_cols=191 Identities=21% Similarity=0.395 Sum_probs=160.4
Q ss_pred ceeecCCcceEEEEEEcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCCh
Q 004248 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDL 617 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL 617 (766)
++||+|+||.||+|...+++.||+|++...... .+.|.+|++++++++||||+++++++.. .+..++||||+++++|
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e~~~~~~l 79 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQ-KQPIYIVMELVPGGSL 79 (251)
T ss_pred CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec-CCCeEEEEEcCCCCcH
Confidence 479999999999999766999999998654332 4679999999999999999999997765 5689999999999999
Q ss_pred hhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCc--
Q 004248 618 SSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAH-- 695 (766)
Q Consensus 618 ~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~-- 695 (766)
.+++.+.. ..+++..+..++.+++.|++|||+. +++||||||+||+++.++.+||+|||+++.......
T Consensus 80 ~~~l~~~~------~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~ 150 (251)
T cd05041 80 LTFLRKKK------NRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTV 150 (251)
T ss_pred HHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCccee
Confidence 99997543 2478999999999999999999987 999999999999999999999999999976532111
Q ss_pred ---cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 696 ---QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 696 ---~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
....+..|+|||....+. ++.++|||||||++|||+| |+.||...
T Consensus 151 ~~~~~~~~~~y~~PE~~~~~~---------~~~~~Di~slG~i~~~l~t~~~~p~~~~ 199 (251)
T cd05041 151 SDGLKQIPIKWTAPEALNYGR---------YTSESDVWSYGILLWETFSLGDTPYPGM 199 (251)
T ss_pred ccccCcceeccCChHhhccCC---------CCcchhHHHHHHHHHHHHhccCCCCccC
Confidence 112345699999875443 4789999999999999999 88888543
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=273.45 Aligned_cols=195 Identities=17% Similarity=0.193 Sum_probs=160.4
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcC-CCCcccceeEEEecC-CcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS-HARLVPLLGHCMERE-NEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~-~~~~lV~E 610 (766)
|+..+.||+|+||.||+|.. .+++.||+|+++..... .....+|+.++.++. ||||+++++++.+.. +..++|||
T Consensus 1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e 80 (282)
T cd07831 1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE 80 (282)
T ss_pred CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence 55678999999999999984 57899999998654222 334568999999995 999999999887631 57899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ |+|.+.+..+. ..++|.++..++.|++.||+|||+. +|+||||||+||+++. +.+||+|||+++..
T Consensus 81 ~~~-~~l~~~l~~~~------~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~ 149 (282)
T cd07831 81 LMD-MNLYELIKGRK------RPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGI 149 (282)
T ss_pred cCC-ccHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEeccccccc
Confidence 997 58888886533 2489999999999999999999997 9999999999999999 99999999999865
Q ss_pred CCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....++..|+|||....... ++.++||||+||++|||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slGv~l~el~~~~~p~~~~ 202 (282)
T cd07831 150 YSKPPYTEYISTRWYRAPECLLTDGY--------YGPKMDIWAVGCVFFEILSLFPLFPGT 202 (282)
T ss_pred ccCCCcCCCCCCcccCChhHhhcCCC--------CCcchhHHHHHHHHHHHHcCCcCCCCC
Confidence 322 233456889999997643322 467999999999999999999999543
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=273.06 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=168.5
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--------HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--------TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
+|-..+++|+|+|+.||||. +...+.||||+-...+.. .+...+|.+|-+.+.||.||++|+|+.-+.+..
T Consensus 464 RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsF 543 (775)
T KOG1151|consen 464 RYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSF 543 (775)
T ss_pred HHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccc
Confidence 35567889999999999999 566889999976432221 235678999999999999999999887656678
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC---CCCcEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD---DKFEVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~ 682 (766)
+-|+|||+|-||+-+|..++. +++.+...|+.||+.||.||.+. .|+|||-||||.|||+- ..|++||+
T Consensus 544 CTVLEYceGNDLDFYLKQhkl-------mSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKIT 615 (775)
T KOG1151|consen 544 CTVLEYCEGNDLDFYLKQHKL-------MSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKIT 615 (775)
T ss_pred eeeeeecCCCchhHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEee
Confidence 999999999999999987654 89999999999999999999985 68999999999999995 45889999
Q ss_pred cchhhhhcCCCC----------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 683 SLSEVCAQGGDA----------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 683 DFG~a~~~~~~~----------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|||+++..+++. +...||-||.+||.+..+..- + +++.|+||||.|||+|..+.|++||....
T Consensus 616 DFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkeP-P----KIsnKVDVWSvGVIFyQClYGrKPFGhnq 688 (775)
T KOG1151|consen 616 DFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEP-P----KISNKVDVWSVGVIFYQCLYGRKPFGHNQ 688 (775)
T ss_pred ecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCC-C----ccccceeeEeeehhhhhhhccCCCCCCch
Confidence 999999875332 345789999999987544221 1 27899999999999999999999996443
|
|
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=273.84 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=164.4
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
|...+.||+|++|.||+|.. .+++.||+|+++..... .+.+.+|+.++++++||||+++++++.. .+..++|+||++
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~-~~~~~~v~e~~~ 99 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLV-GDELWVVMEFLE 99 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEc-CCeEEEEEeccC
Confidence 55568999999999999984 57899999998654433 5568999999999999999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+++|.+++... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|++|||.+......
T Consensus 100 ~~~L~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~ 168 (285)
T cd06648 100 GGALTDIVTHT--------RMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE 168 (285)
T ss_pred CCCHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccC
Confidence 99999998652 388999999999999999999997 9999999999999999999999999988755322
Q ss_pred ---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 ---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....++..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 169 ~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slGv~l~ell~g~~p~~~~ 218 (285)
T cd06648 169 VPRRKSLVGTPYWMAPEVISRLP---------YGTEVDIWSLGIMVIEMVDGEPPYFNE 218 (285)
T ss_pred CcccccccCCccccCHHHhcCCC---------CCCcccHHHHHHHHHHHHhCCCCCcCC
Confidence 12235788999999875443 468999999999999999999998543
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=272.99 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=163.7
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
|+..+.||+|+||.||+|.. .+++.||||.+..... ..+.+.+|++++++++||||+++++++.+ ++..|+||||+
T Consensus 6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~ 84 (277)
T cd06641 6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-DTKLWIIMEYL 84 (277)
T ss_pred hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEe-CCeEEEEEEeC
Confidence 66778999999999999985 5688999998864432 24578999999999999999999998766 56799999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++... .+++.....++.|++.|++|||+. +++|+||||+||+++.++.++|+|||+++....
T Consensus 85 ~~~~l~~~i~~~--------~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~ 153 (277)
T cd06641 85 GGGSALDLLEPG--------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD 153 (277)
T ss_pred CCCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceeccc
Confidence 999999998632 388999999999999999999997 999999999999999999999999999875532
Q ss_pred C---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 D---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. .....++..|++||...... .+.++|||||||++|||++|+.||..
T Consensus 154 ~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Dv~slG~~l~~l~~g~~p~~~ 203 (277)
T cd06641 154 TQIKRNTFVGTPFWMAPEVIKQSA---------YDSKADIWSLGITAIELAKGEPPHSE 203 (277)
T ss_pred chhhhccccCCccccChhhhccCC---------CCchhhHHHHHHHHHHHHcCCCCCCc
Confidence 1 12235677899999875433 46799999999999999999999853
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=273.45 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=164.3
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
|+..++||+|++|.||+|.. .+|+.||+|++...... .+.+.+|++++++++|||++++++++.+ ++..|+||||
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~-~~~~~iv~e~ 79 (283)
T cd07835 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHS-ENKLYLVFEF 79 (283)
T ss_pred CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheecc-CCeEEEEEec
Confidence 56778999999999999985 57999999998754322 4578899999999999999999998875 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
++ ++|.+++..... ..++|..+..++.|+++||+|||+. +++||||+|+||++++++.+||+|||+++...
T Consensus 80 ~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~ 150 (283)
T cd07835 80 LD-LDLKKYMDSSPL-----TGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFG 150 (283)
T ss_pred cC-cCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccC
Confidence 96 699999875432 2489999999999999999999987 99999999999999999999999999997653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|+|||....... ++.++|||||||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Di~slG~~l~~l~~g~~pf~~~ 203 (283)
T cd07835 151 VPVRTYTHEVVTLWYRAPEILLGSRQ--------YSTPVDIWSIGCIFAEMVNRRPLFPGD 203 (283)
T ss_pred CCccccCccccccCCCCCceeecCcc--------cCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 22 122345778999997654321 468999999999999999999998543
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=276.57 Aligned_cols=201 Identities=20% Similarity=0.285 Sum_probs=165.6
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC----
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE---- 602 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~---- 602 (766)
...++|+..+.||+|+||.||+|.. .+|+.||||+++.... ....+.+|++++++++||||+++++++.+.+
T Consensus 4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~ 83 (302)
T cd07864 4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD 83 (302)
T ss_pred hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence 3567899999999999999999996 4689999999975432 2456889999999999999999999876532
Q ss_pred -----CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 603 -----NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 603 -----~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
+..++|+||+++ ++.+.+.... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++
T Consensus 84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~ 153 (302)
T cd07864 84 FKKDKGAFYLVFEYMDH-DLMGLLESGL------VHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKG 153 (302)
T ss_pred ccccCCcEEEEEcccCc-cHHHHHhcCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCC
Confidence 268999999986 7777775432 2489999999999999999999997 999999999999999999
Q ss_pred cEEeccchhhhhcCCCC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGGDA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+||+|||+++...... ....++..|++||.+..... .+.++|||||||+++||++|+.||...
T Consensus 154 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~--------~~~~~Di~slG~~~~el~~g~~~~~~~ 221 (302)
T cd07864 154 QIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEER--------YGPAIDVWSCGCILGELFTKKPIFQAN 221 (302)
T ss_pred cEEeCcccccccccCCcccccccceeccCccChHHhcCCCC--------CCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999997653221 22345778999997753321 467999999999999999999999643
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=275.49 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=162.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|++|.||+|+. .+|+.||+|++..... ..+.+.+|++++++++||||+++++++.. .+..|+||
T Consensus 2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~ 80 (294)
T PLN00009 2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-EKRLYLVF 80 (294)
T ss_pred CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEec-CCeEEEEE
Confidence 5688899999999999999995 4789999999865432 24578899999999999999999998765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~ 688 (766)
||++ ++|.+++..... ..+++.....++.||+.||+|||+. +|+||||||+||++++ ++.+||+|||+++
T Consensus 81 e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~ 151 (294)
T PLN00009 81 EYLD-LDLKKHMDSSPD-----FAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLAR 151 (294)
T ss_pred eccc-ccHHHHHHhCCC-----CCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEccccccc
Confidence 9996 588888754332 2367888889999999999999997 9999999999999985 5679999999997
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... .....++..|+|||.+..... ++.++||||+||++|||+||+.||..
T Consensus 152 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~--------~~~~~Dv~slG~i~~~l~tg~~pf~~ 206 (294)
T PLN00009 152 AFGIPVRTFTHEVVTLWYRAPEILLGSRH--------YSTPVDIWSVGCIFAEMVNQKPLFPG 206 (294)
T ss_pred ccCCCccccccCceeecccCHHHHhCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 65322 223456789999997654221 47899999999999999999999854
|
|
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=282.88 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEec---CCcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMER---ENEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~---~~~~ 605 (766)
.++|+..+.||+|+||.||+|. ..+|+.||+|++..... ..+.+.+|+.++++++||||+++++++... ....
T Consensus 4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 83 (334)
T cd07855 4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV 83 (334)
T ss_pred hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence 3678889999999999999998 45799999999865432 245688899999999999999999876432 2458
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+. |+|.+++.... .+++.....++.|++.||+|||+. +|+||||||+||++++++.+||+|||
T Consensus 84 ~lv~e~~~-~~l~~~~~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg 152 (334)
T cd07855 84 YVVMDLME-SDLHHIIHSDQ-------PLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFG 152 (334)
T ss_pred EEEEehhh-hhHHHHhccCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccc
Confidence 99999996 69999886543 389999999999999999999997 99999999999999999999999999
Q ss_pred hhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....++..|+|||.+..... ++.++|||||||++|||++|+.||...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~--------~~~~~Di~slG~~l~el~~g~~pf~~~ 215 (334)
T cd07855 153 MARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPE--------YTTAIDMWSVGCIFAEMLGRRQLFPGK 215 (334)
T ss_pred cceeecccCcCCCcccccccccccccChHHhcCCcc--------cccccchHHHHHHHHHHHcCCCccCCC
Confidence 98764211 123467889999998654221 478999999999999999999999544
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=282.75 Aligned_cols=199 Identities=17% Similarity=0.250 Sum_probs=167.2
Q ss_pred HHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC----
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE---- 602 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~---- 602 (766)
...++|+..+.||+|+||.||+|. ..+|+.||||++...... .+.+.+|++++++++||||+++++++....
T Consensus 12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07880 12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDR 91 (343)
T ss_pred ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccc
Confidence 346779999999999999999998 567999999998543221 456889999999999999999999775422
Q ss_pred -CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 603 -NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 603 -~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
...++||||+ +++|.+++... .+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+|+
T Consensus 92 ~~~~~lv~e~~-~~~l~~~~~~~--------~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl 159 (343)
T cd07880 92 FHDFYLVMPFM-GTDLGKLMKHE--------KLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKI 159 (343)
T ss_pred cceEEEEEecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEE
Confidence 2468999999 67998887532 389999999999999999999997 9999999999999999999999
Q ss_pred ccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||+++..........+++.|++||.+..... ++.++||||+||++||+++|+.||...
T Consensus 160 ~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~ll~~l~~g~~pf~~~ 219 (343)
T cd07880 160 LDFGLARQTDSEMTGYVVTRWYRAPEVILNWMH--------YTQTVDIWSVGCIMAEMLTGKPLFKGH 219 (343)
T ss_pred eecccccccccCccccccCCcccCHHHHhCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999876555555567889999998754221 468999999999999999999999643
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=269.70 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=160.9
Q ss_pred HHHHHHHhCCCCcccee--ecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec
Q 004248 526 YQQLLAATGDFSDANLI--KNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER 601 (766)
Q Consensus 526 ~~~l~~~~~~~~~~~~i--g~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 601 (766)
..+.....++|+..+.+ |+|+||.||++. ..++..+|+|.+........ |+.....+ +||||+++++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~----e~~~~~~~~~h~~iv~~~~~~~~- 80 (267)
T PHA03390 6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI----EPMVHQLMKDNPNFIKLYYSVTT- 80 (267)
T ss_pred HHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh----hHHHHHHhhcCCCEEEEEEEEec-
Confidence 34555556677777776 999999999998 46788999999865432211 22222222 79999999997766
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEE
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVR 680 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~k 680 (766)
++..|+||||+++|+|.+++.... .++|.++..++.|+++||+|||+. +++||||||+||+++.++ .+|
T Consensus 81 ~~~~~iv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~ 150 (267)
T PHA03390 81 LKGHVLIMDYIKDGDLFDLLKKEG-------KLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIY 150 (267)
T ss_pred CCeeEEEEEcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEE
Confidence 568999999999999999997543 489999999999999999999997 899999999999999998 999
Q ss_pred eccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 681 LGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 681 l~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+|||+++...... ...++..|+|||...... ++.++||||+||++|||+||+.||..
T Consensus 151 l~dfg~~~~~~~~~-~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~il~~l~~g~~p~~~ 208 (267)
T PHA03390 151 LCDYGLCKIIGTPS-CYDGTLDYFSPEKIKGHN---------YDVSFDWWAVGVLTYELLTGKHPFKE 208 (267)
T ss_pred EecCccceecCCCc-cCCCCCcccChhhhcCCC---------CCchhhHHHHHHHHHHHHHCCCCCCC
Confidence 99999987664332 235788899999886544 46799999999999999999999963
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=278.15 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=165.1
Q ss_pred cceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 539 ANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
.+++|+|.||+||-|+ .++|+.||||.+++-.. +....++|+.||++++||.||.+-..| ++.+.+++|||-+.
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~-ET~ervFVVMEKl~- 646 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMF-ETPERVFVVMEKLH- 646 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEee-cCCceEEEEehhhc-
Confidence 4789999999999998 67899999999976543 256789999999999999999987644 45678999999996
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEEeccchhhhhcC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVRLGSLSEVCAQG 691 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl~DFG~a~~~~ 691 (766)
||..+.|-.... ..+++...+.+..||+.||.|||.+ +|+|+|+||+|||+.+. -++||||||+||.++
T Consensus 647 GDMLEMILSsEk-----gRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIg 718 (888)
T KOG4236|consen 647 GDMLEMILSSEK-----GRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIG 718 (888)
T ss_pred chHHHHHHHhhc-----ccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecc
Confidence 566665543221 2489999999999999999999998 99999999999999754 369999999999997
Q ss_pred CC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcccccc
Q 004248 692 GD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQ 755 (766)
Q Consensus 692 ~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~ 755 (766)
+. ....+||++|.|||++....| +..-|+||.|||+|--++|-.||...+.-.+|
T Consensus 719 EksFRrsVVGTPAYLaPEVLrnkGy---------NrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQ 775 (888)
T KOG4236|consen 719 EKSFRRSVVGTPAYLAPEVLRNKGY---------NRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQ 775 (888)
T ss_pred hhhhhhhhcCCccccCHHHHhhccc---------cccccceeeeEEEEEEecccccCCCccchhHH
Confidence 65 356789999999999876653 56789999999999999999999554444333
|
|
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=272.76 Aligned_cols=199 Identities=19% Similarity=0.275 Sum_probs=170.0
Q ss_pred HhCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++.|+..+.||+|++|.||+|... ++..||+|++.......+.+.+|++++++++|+||+++++++.. ++..|+|+|
T Consensus 17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e 95 (286)
T cd06614 17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV-GDELWVVME 95 (286)
T ss_pred ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEE-CCEEEEEEe
Confidence 4556788899999999999999965 68899999997654446679999999999999999999998776 578999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++.... ..+++..+..++.|++.||+|||+. +|+|+||||+||+++.++.+||+|||++...
T Consensus 96 ~~~~~~L~~~l~~~~------~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~ 166 (286)
T cd06614 96 YMDGGSLTDIITQNF------VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQL 166 (286)
T ss_pred ccCCCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhh
Confidence 999999999998653 2489999999999999999999997 9999999999999999999999999988755
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....++..|++||...... ++.++|||||||++|||+||+.||...
T Consensus 167 ~~~~~~~~~~~~~~~y~~PE~~~~~~---------~~~~~Dv~slGvil~~l~~g~~p~~~~ 219 (286)
T cd06614 167 TKEKSKRNSVVGTPYWMAPEVIKRKD---------YGPKVDIWSLGIMCIEMAEGEPPYLRE 219 (286)
T ss_pred ccchhhhccccCCcccCCHhHhcCCC---------CCCccccHHHHHHHHHHHhCCCCCCCC
Confidence 322 12234567899999875443 478999999999999999999998543
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=276.90 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=163.6
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|+..+.||+|+||.||+|+. .++..||+|++...... .+++.+|++++++++|||+|++++++.+ ++..++|||
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 105 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLR-EHTAWLVME 105 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-CCeEEEEEe
Confidence 66778999999999999994 57899999998654322 3478899999999999999999998876 567899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ |+|.+.+.... ..++|.++..++.|++.||.|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 106 ~~~-g~l~~~~~~~~------~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~ 175 (317)
T cd06635 106 YCL-GSASDLLEVHK------KPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIA 175 (317)
T ss_pred CCC-CCHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCcccc
Confidence 997 58888775432 2489999999999999999999997 9999999999999999999999999998755
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....++..|+|||.......+. ++.++|||||||++|||++|+.||...
T Consensus 176 ~~-~~~~~~~~~y~aPE~~~~~~~~~------~~~~~Dv~slGvil~el~~g~~p~~~~ 227 (317)
T cd06635 176 SP-ANSFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFNM 227 (317)
T ss_pred CC-cccccCCccccChhhhhcCCCCC------CCccccHHHHHHHHHHHHhCCCCCCCc
Confidence 32 23345788899999864322222 578999999999999999999998643
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=263.34 Aligned_cols=195 Identities=18% Similarity=0.204 Sum_probs=169.9
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 606 (766)
.++|+..++||+|+|++|..+. .++.+.+|+|++++.-.. ..-...|-.+..+. +||.+|.++. |++++..++
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhs-cfqtesrlf 327 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHS-CFQTESRLF 327 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhh-hhcccceEE
Confidence 4679999999999999999998 567899999999764332 22345566666665 7999999997 777788999
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|.||++||+|.-++.+++. ++++....+..+|..||.|||++ +||.||+|..|||+|..|++|++|+|+
T Consensus 328 fvieyv~ggdlmfhmqrqrk-------lpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygm 397 (593)
T KOG0695|consen 328 FVIEYVNGGDLMFHMQRQRK-------LPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGM 397 (593)
T ss_pred EEEEEecCcceeeehhhhhc-------CcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccch
Confidence 99999999999988876654 99999999999999999999998 999999999999999999999999999
Q ss_pred hhhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 687 VCAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 687 a~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++.- ++.+++.+||+.|.|||++.+..|| ..+|+|++||+++||+.|+.||+
T Consensus 398 cke~l~~gd~tstfcgtpnyiapeilrgeeyg---------fsvdwwalgvlmfemmagrspfd 452 (593)
T KOG0695|consen 398 CKEGLGPGDTTSTFCGTPNYIAPEILRGEEYG---------FSVDWWALGVLMFEMMAGRSPFD 452 (593)
T ss_pred hhcCCCCCcccccccCCCcccchhhhcccccC---------ceehHHHHHHHHHHHHcCCCCcc
Confidence 9864 4557788999999999999888865 47799999999999999999994
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=277.40 Aligned_cols=200 Identities=21% Similarity=0.258 Sum_probs=161.3
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|...+.||+|+||.||++.. .+++.||+|++...... ..++.+|+.++.++. |||||++++++.. ++..+++||
T Consensus 5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~-~~~~~~~~e 83 (288)
T cd06616 5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFR-EGDCWICME 83 (288)
T ss_pred HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEec-CCcEEEEEe
Confidence 455678999999999999984 56899999998754322 557899999999996 9999999998765 567899999
Q ss_pred eCCCCChhhhh---hccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 611 YMPNGDLSSSL---YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 611 y~~~GsL~~~l---~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|++. ++.++. ..... ..+++.....++.|++.||+|||+. .+|+||||||+||++++++.+||+|||++
T Consensus 84 ~~~~-~l~~l~~~~~~~~~-----~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~ 155 (288)
T cd06616 84 LMDI-SLDKFYKYVYEVLK-----SVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGIS 155 (288)
T ss_pred cccC-CHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchh
Confidence 9974 665543 22211 3489999999999999999999974 38999999999999999999999999999
Q ss_pred hhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+..... .....++..|+|||.+....... ++.++|||||||++|||++|+.||...
T Consensus 156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~------~~~~~Di~slG~il~el~~g~~p~~~~ 213 (288)
T cd06616 156 GQLVDSIAKTRDAGCRPYMAPERIDPSARDG------YDVRSDVWSLGITLYEVATGKFPYPKW 213 (288)
T ss_pred HHhccCCccccccCccCccCHHHhccccccC------CcchhhhhHHHHHHHHHHhCCCCchhc
Confidence 765322 23345788899999876542111 578999999999999999999998543
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=273.41 Aligned_cols=197 Identities=17% Similarity=0.310 Sum_probs=164.6
Q ss_pred CCCCccceeecCCcceEEEEEEc-----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~ 605 (766)
++|+..+.||+|+||.||+|... +++.||||.+...... .+.|.+|++++++++||||+++++++... ....
T Consensus 4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~ 83 (284)
T cd05038 4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL 83 (284)
T ss_pred hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence 35777899999999999999843 3789999999765543 56899999999999999999999977542 3468
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+++|+|.+++..... .++|.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 84 ~lv~e~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg 154 (284)
T cd05038 84 RLIMEYLPSGSLRDYLQRHRD------QINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFG 154 (284)
T ss_pred EEEEecCCCCCHHHHHHhCcc------ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccc
Confidence 999999999999999976432 489999999999999999999987 99999999999999999999999999
Q ss_pred hhhhcCCCCc------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 686 EVCAQGGDAH------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~~~~------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.+........ ....+..|++||...... ++.++|||||||+++||+||+.|+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~---------~~~~~Di~slG~~l~el~tg~~p~~~ 214 (284)
T cd05038 155 LAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSK---------FSSASDVWSFGVTLYELFTYGDPSQS 214 (284)
T ss_pred cccccccCCcceeccCCCCCcccccCcHHHccCC---------CCcccchHHHhhhhheeeccCCCccc
Confidence 9987642211 122345689999775443 46789999999999999999999854
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=276.19 Aligned_cols=199 Identities=18% Similarity=0.259 Sum_probs=163.0
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC------
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE------ 602 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~------ 602 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++...... ...+.+|++++++++||||++++++|...+
T Consensus 11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 90 (310)
T cd07865 11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY 90 (310)
T ss_pred hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence 45788999999999999999995 56899999998653322 345678999999999999999999876432
Q ss_pred -CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 603 -NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 603 -~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
...++||||++ ++|.+.+.... ..+++.+...++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 91 ~~~~~lv~e~~~-~~l~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl 160 (310)
T cd07865 91 KGSFYLVFEFCE-HDLAGLLSNKN------VKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKL 160 (310)
T ss_pred CceEEEEEcCCC-cCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEE
Confidence 24599999997 48888886532 2489999999999999999999997 9999999999999999999999
Q ss_pred ccchhhhhcCCCC-------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQGGDA-------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~~~-------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||++....... ....++..|+|||....... ++.++|||||||++|||+||+.||...
T Consensus 161 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~~l~el~t~~~~~~~~ 227 (310)
T cd07865 161 ADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERD--------YGPPIDMWGAGCIMAEMWTRSPIMQGN 227 (310)
T ss_pred CcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcc--------cCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence 9999997652211 22346778999997654321 467999999999999999999988543
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=268.82 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=161.8
Q ss_pred eecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||.||+|+. .+++.||+|.+..... ..+.+.+|++++++++||||+++++++.+ ++..++||||+++|+
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~ 79 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKD-KKYIYMLMEYCLGGE 79 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEc-CCccEEEEecCCCCc
Confidence 69999999999995 4589999999975432 24579999999999999999999997765 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC--C
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--A 694 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--~ 694 (766)
|.+++.+.. .+++.++..++.|++.||+|||+. +++|+||||+||+++.++.+||+|||+++..... .
T Consensus 80 L~~~l~~~~-------~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~ 149 (262)
T cd05572 80 LWTILRDRG-------LFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKT 149 (262)
T ss_pred HHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccccc
Confidence 999997643 388999999999999999999997 9999999999999999999999999999876432 2
Q ss_pred ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 695 ~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
....++..|++||...... ++.++|+||+||++|||++|+.||....
T Consensus 150 ~~~~~~~~~~~PE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~~ 196 (262)
T cd05572 150 WTFCGTPEYVAPEIILNKG---------YDFSVDYWSLGILLYELLTGRPPFGEDD 196 (262)
T ss_pred ccccCCcCccChhHhcCCC---------CCChhhhhhhHHHHHHHHhCCCCcCCCC
Confidence 2345678899999865433 4789999999999999999999996444
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=269.63 Aligned_cols=201 Identities=17% Similarity=0.281 Sum_probs=159.7
Q ss_pred CCccceeecCCcceEEEEEEc----CCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCC-----
Q 004248 536 FSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMEREN----- 603 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----- 603 (766)
|...++||+|+||.||+|.+. +++.||||++..... ..+++.+|++++++++||||+++++++...+.
T Consensus 1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 80 (273)
T cd05074 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP 80 (273)
T ss_pred CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence 556789999999999999843 368999999865432 24578999999999999999999997754221
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++++||+++|+|.+++...... .....+++....+++.|++.||+|||+. +|+||||||+||++++++.+|++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~d 156 (273)
T cd05074 81 IPMVILPFMKHGDLHTFLLMSRIG-EEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVAD 156 (273)
T ss_pred ceEEEEecCCCCcHHHHHHHhccc-CCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECc
Confidence 247899999999999887533211 1123489999999999999999999987 999999999999999999999999
Q ss_pred chhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 684 LSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
||+++..... .....++..|++||...... ++.++|||||||++|||++ |+.||...
T Consensus 157 fg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~sDi~slG~il~el~~~g~~p~~~~ 219 (273)
T cd05074 157 FGLSKKIYSGDYYRQGCASKLPVKWLALESLADNV---------YTTHSDVWAFGVTMWEIMTRGQTPYAGV 219 (273)
T ss_pred ccccccccCCcceecCCCccCchhhcCHhHHhcCc---------cchhhhhHHHHHHHHHHhhCCCCCCCCC
Confidence 9999865321 11223446788999765433 4789999999999999999 88888533
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=282.06 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=163.9
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC-----
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE----- 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----- 602 (766)
..++|+..+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|++++++++||||+++++++....
T Consensus 14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 93 (353)
T cd07850 14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF 93 (353)
T ss_pred hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence 457799999999999999999994 5799999999864322 2456888999999999999999999765321
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...|+||||++ |+|.+.+.. .+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+
T Consensus 94 ~~~~lv~e~~~-~~l~~~~~~---------~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~ 160 (353)
T cd07850 94 QDVYLVMELMD-ANLCQVIQM---------DLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKIL 160 (353)
T ss_pred CcEEEEEeccC-CCHHHHHhh---------cCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEc
Confidence 24799999997 588887752 278889999999999999999997 99999999999999999999999
Q ss_pred cchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++..... .....++..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 161 Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~~l~~l~~g~~pf~~~ 220 (353)
T cd07850 161 DFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGEMIRGTVLFPGT 220 (353)
T ss_pred cCccceeCCCCCCCCCCcccccccCHHHHhCCC---------CCCchhhHhHHHHHHHHHHCCCCCCCC
Confidence 99999866432 23345788899999875543 478999999999999999999998543
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=272.15 Aligned_cols=197 Identities=19% Similarity=0.271 Sum_probs=165.0
Q ss_pred CCccceeecCCcceEEEEEEc-CCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~lV~E 610 (766)
|+..+.||+|+||.||+|+.. +++.||+|++.... ...+.+.+|++++++++|||++++++++... .+..++|||
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e 80 (287)
T cd07840 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE 80 (287)
T ss_pred CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence 567789999999999999954 58999999997653 2245788999999999999999999988763 267999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++ +|.+++.+.. ..+++.++..++.|++.||+|||+. +++|+||||+||++++++.+||+|||++...
T Consensus 81 ~~~~-~l~~~~~~~~------~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~ 150 (287)
T cd07840 81 YMDH-DLTGLLDSPE------VKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPY 150 (287)
T ss_pred cccc-cHHHHHhccC------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeec
Confidence 9984 9998886542 2489999999999999999999997 9999999999999999999999999999766
Q ss_pred CCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....++..|+|||....... ++.++|||||||++|||+||+.||....
T Consensus 151 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~--------~~~~~Dv~slG~~l~el~t~~~p~~~~~ 206 (287)
T cd07840 151 TKRNSADYTNRVITLWYRPPELLLGATR--------YGPEVDMWSVGCILAELFLGKPIFQGST 206 (287)
T ss_pred cCCCcccccccccccccCCceeeEcccc--------CChHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 332 233456778999997643221 4789999999999999999999986443
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=276.74 Aligned_cols=201 Identities=16% Similarity=0.234 Sum_probs=163.3
Q ss_pred CCCccceeecCCcceEEEEEEc---CCcEEEEEEeeccc---c-CHHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE---GGIPVVIKRIDLQS---V-KTEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~---~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~ 606 (766)
.|+..+.||+|+||.||+|+.. +++.||+|.+.... . ..+.+.+|++++++++||||+++++++... ++..+
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (316)
T cd07842 1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY 80 (316)
T ss_pred CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence 3677889999999999999953 58999999997633 1 246788999999999999999999988763 15799
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC----CCcEEec
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD----KFEVRLG 682 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~----~~~~kl~ 682 (766)
+||||+++ +|.+++...... ....+++.....++.|++.||+|||+. +|+||||||+||+++. ++.+||+
T Consensus 81 lv~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~ 154 (316)
T cd07842 81 LLFDYAEH-DLWQIIKFHRQA--KRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIG 154 (316)
T ss_pred EEEeCCCc-CHHHHHHhhccC--CCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEEC
Confidence 99999985 787777543221 113588999999999999999999997 8999999999999999 8999999
Q ss_pred cchhhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++..... .....++..|+|||....... ++.++|||||||++|||++|+.||...
T Consensus 155 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~~l~~l~~~~~~~~~~ 219 (316)
T cd07842 155 DLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARH--------YTKAIDIWAIGCIFAELLTLEPIFKGR 219 (316)
T ss_pred CCccccccCCCcccccccCCccccccccCHHHHhCCCC--------CCcHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 99998865322 123356788999997644321 478999999999999999999999533
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=291.94 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=159.3
Q ss_pred CCccceeecCCcceEEEEEE-cCC----cEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGG----IPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g----~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.....+||+|+||+||||.+ +.| .+||||++...... .+++++|+-+|.+++|||+++++|+|.. ..+.||
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~--s~~qlv 775 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCML--STLQLV 775 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhccc--chHHHH
Confidence 34568999999999999984 443 58999998665443 6789999999999999999999999976 358999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
++|||.|+|.++++.++. .+.-...+.+..|||+||.|||++ ++|||||.++|||+.+-..+||.|||+|+
T Consensus 776 tq~mP~G~LlDyvr~hr~------~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ 846 (1177)
T KOG1025|consen 776 TQLMPLGCLLDYVREHRD------NIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAK 846 (1177)
T ss_pred HHhcccchHHHHHHHhhc------cccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhh
Confidence 999999999999987653 477788899999999999999998 99999999999999999999999999999
Q ss_pred hcCCCCccce-----eeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 689 AQGGDAHQSR-----ITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 689 ~~~~~~~~~~-----~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
....+...+. ...-++|-|.+.... +|.++|||||||.+||++| |.+|++.
T Consensus 847 ll~~d~~ey~~~~gK~pikwmale~i~~~~---------~thqSDVWsfGVtiWElmTFGa~Py~g 903 (1177)
T KOG1025|consen 847 LLAPDEKEYSAPGGKVPIKWMALESIRIRK---------YTHQSDVWSFGVTIWELMTFGAKPYDG 903 (1177)
T ss_pred ccCcccccccccccccCcHHHHHHHhhccC---------CCchhhhhhhhhhHHHHHhcCCCccCC
Confidence 8754433211 122344444443332 6899999999999999998 8999864
|
|
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=268.18 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=165.7
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||+|.. .+|..||+|.+..... ..+.+.+|++++++++||||+++++.+.. ++..++|+|
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~-~~~~~lv~e 79 (257)
T cd08225 1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE-NGRLFIVME 79 (257)
T ss_pred CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheecc-CCeEEEEEe
Confidence 477889999999999999995 5688999999865422 34578899999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG~a~~ 689 (766)
|+++++|.+++.+... ..++|..+..++.|++.||+|||+. +|+||||||+||++++++ .+||+|||.+..
T Consensus 80 ~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~ 151 (257)
T cd08225 80 YCDGGDLMKRINRQRG-----VLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQ 151 (257)
T ss_pred cCCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchh
Confidence 9999999999975432 3479999999999999999999987 999999999999999885 479999999876
Q ss_pred cCCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ....++..|+|||...... ++.++|||||||+++||++|+.||...
T Consensus 152 ~~~~~~~~~~~~~~~~~~ape~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 205 (257)
T cd08225 152 LNDSMELAYTCVGTPYYLSPEICQNRP---------YNNKTDIWSLGCVLYELCTLKHPFEGN 205 (257)
T ss_pred ccCCcccccccCCCccccCHHHHcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 54321 2235778899999765433 478999999999999999999998543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=297.58 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=153.9
Q ss_pred HhCCCCccceeecCCcceEEEEEEc--CCcEEEEE------------------EeeccccCHHHHHHHHHHHhhcCCCCc
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE--GGIPVVIK------------------RIDLQSVKTEAYLLELDFFSKVSHARL 591 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~--~g~~vavK------------------~l~~~~~~~~~~~~E~~~l~~l~H~ni 591 (766)
..++|+..+.||+|+||+||+|... ++..+++| ++.......+.+.+|+++|++++||||
T Consensus 146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI 225 (501)
T PHA03210 146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI 225 (501)
T ss_pred hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence 3568999999999999999998743 22222222 111111123568899999999999999
Q ss_pred ccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCe
Q 004248 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSI 671 (766)
Q Consensus 592 v~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NI 671 (766)
|++++++.. ++..|+|+||+. ++|.+++...... ........+...|+.|++.||+|||+. +||||||||+||
T Consensus 226 v~l~~~~~~-~~~~~lv~e~~~-~~l~~~l~~~~~~--~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NI 298 (501)
T PHA03210 226 LKIEEILRS-EANTYMITQKYD-FDLYSFMYDEAFD--WKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENI 298 (501)
T ss_pred CcEeEEEEE-CCeeEEEEeccc-cCHHHHHhhcccc--ccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHE
Confidence 999998765 567899999996 5888877543211 011234566778999999999999997 999999999999
Q ss_pred eeCCCCcEEeccchhhhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 672 LLDDKFEVRLGSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 672 Ll~~~~~~kl~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
|++.++.+||+|||+++..... .....||..|+|||.+.... ++.++|||||||++|||++|+.|+
T Consensus 299 Ll~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvil~ell~~~~~p 368 (501)
T PHA03210 299 FLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDG---------YCEITDIWSCGLILLDMLSHDFCP 368 (501)
T ss_pred EECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCC---------CCcHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999866332 22346899999999886544 468999999999999999998654
|
|
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=280.32 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=163.5
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc---cCHHHHHHHHHHHhhc-CCCCcccceeEEEec-CCcE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS---VKTEAYLLELDFFSKV-SHARLVPLLGHCMER-ENEK 605 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~-~~~~ 605 (766)
..++|+..+.||+|+||.||+|.. .+|+.||||++.... .....+.+|+.+++++ +||||+++++++... ....
T Consensus 5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~ 84 (337)
T cd07852 5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI 84 (337)
T ss_pred hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence 346788889999999999999995 468899999985422 2245678899999999 999999999987643 2358
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||++ ++|.+++.+. .++|..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 85 ~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g 152 (337)
T cd07852 85 YLVFEYME-TDLHAVIRAN--------ILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFG 152 (337)
T ss_pred EEEecccc-cCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeecc
Confidence 99999998 5999888643 378999999999999999999987 99999999999999999999999999
Q ss_pred hhhhcCCC--------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 686 EVCAQGGD--------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~~--------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+++..... .....++..|+|||.+..... .+.++|||||||++|||+||+.||..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~sDi~slG~~l~el~tg~~pf~~ 215 (337)
T cd07852 153 LARSLSELEENPENPVLTDYVATRWYRAPEILLGSTR--------YTKGVDMWSVGCILGEMLLGKPLFPG 215 (337)
T ss_pred chhccccccccccCcchhcccccccccCceeeecccc--------ccccchHHHHHHHHHHHHhCCCCCCC
Confidence 99765321 123457888999997654321 46899999999999999999999853
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=265.39 Aligned_cols=194 Identities=24% Similarity=0.421 Sum_probs=162.4
Q ss_pred CccceeecCCcceEEEEEEcC-----CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 537 SDANLIKNGHSGDLFRGILEG-----GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+..+.||+|+||.||+|+... +..||+|.+..... ..+.+.+|++++++++||||+++++++.+ .+..++||
T Consensus 2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~i~ 80 (258)
T smart00219 2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTE-EEPLMIVM 80 (258)
T ss_pred cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcC-CCeeEEEE
Confidence 456889999999999999543 48899999976544 35689999999999999999999998776 46899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|.+++..... ..+++.++..++.|++.||+|||+. +++||||||+||++++++.+|++|||+++.
T Consensus 81 e~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~ 152 (258)
T smart00219 81 EYMEGGDLLDYLRKNRP-----KELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRD 152 (258)
T ss_pred eccCCCCHHHHHHhhhh-----ccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCcee
Confidence 99999999999975432 1289999999999999999999998 999999999999999999999999999976
Q ss_pred cCCCCc----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 690 QGGDAH----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 690 ~~~~~~----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
...... ...++..|++||...... ++.++||||+||++|||++ |+.||..
T Consensus 153 ~~~~~~~~~~~~~~~~~y~~Pe~~~~~~---------~~~~~Di~slG~i~~~l~~~g~~p~~~ 207 (258)
T smart00219 153 LYDDDYYKKKGGKLPIRWMAPESLKDGK---------FTSKSDVWSFGVLLWEIFTLGESPYPG 207 (258)
T ss_pred cccccccccccCCCcccccChHHhccCC---------CCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence 533211 122567899999774332 4789999999999999999 7888753
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=275.44 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=162.7
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC------
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE------ 602 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~------ 602 (766)
.++|+..++||+|+||.||+|+. .+++.||||++...... ...+.+|++++++++||||+++++++.+..
T Consensus 7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~ 86 (311)
T cd07866 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK 86 (311)
T ss_pred cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence 46899999999999999999995 56899999998654322 346789999999999999999999765432
Q ss_pred -CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 603 -NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 603 -~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
...++|+||+++ +|.+.+.... ..+++.++..++.|+++||+|||+. +|+||||||+||++++++.+||
T Consensus 87 ~~~~~lv~~~~~~-~l~~~~~~~~------~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l 156 (311)
T cd07866 87 RGSVYMVTPYMDH-DLSGLLENPS------VKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKI 156 (311)
T ss_pred CceEEEEEecCCc-CHHHHHhccc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEE
Confidence 247999999975 7877776432 2489999999999999999999997 9999999999999999999999
Q ss_pred ccchhhhhcCCCC--------------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 682 GSLSEVCAQGGDA--------------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 682 ~DFG~a~~~~~~~--------------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+|||+++...... ....++..|+|||....... ++.++|||||||++|||++|++||.
T Consensus 157 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~il~el~~g~~~~~ 228 (311)
T cd07866 157 ADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERR--------YTTAVDIWGIGCVFAEMFTRRPILQ 228 (311)
T ss_pred CcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCc--------cCchhHhHHHHHHHHHHHhCCCCCC
Confidence 9999997642211 12345778999998654321 4789999999999999999999985
Q ss_pred C
Q 004248 748 S 748 (766)
Q Consensus 748 ~ 748 (766)
.
T Consensus 229 ~ 229 (311)
T cd07866 229 G 229 (311)
T ss_pred C
Confidence 4
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-30 Score=286.53 Aligned_cols=211 Identities=18% Similarity=0.226 Sum_probs=182.3
Q ss_pred HHHHHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec--
Q 004248 526 YQQLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER-- 601 (766)
Q Consensus 526 ~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~-- 601 (766)
++.+...++.|++.++||+|.+|.||+++ .++|+.+|||++.......++...|.++++.. .|||++.++|++...
T Consensus 11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~ 90 (953)
T KOG0587|consen 11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDP 90 (953)
T ss_pred hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecC
Confidence 34444556778899999999999999999 78899999999988877788899999999988 699999999988642
Q ss_pred --CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 602 --ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 602 --~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
++++|||||||.+|+.-|++..-.+ ..+.|+.+..|+.++++|+.+||.. .+||||||=.|||++.++.+
T Consensus 91 ~~~DqLWLVMEfC~gGSVTDLVKn~~g-----~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~V 162 (953)
T KOG0587|consen 91 GNGDQLWLVMEFCGGGSVTDLVKNTKG-----NRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEV 162 (953)
T ss_pred CCCCeEEEEeeccCCccHHHHHhhhcc-----cchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcE
Confidence 4689999999999999999975443 4699999999999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 680 RLGSLSEVCAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 680 kl~DFG~a~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+.|||++...+ ....+.+||++|||||++.....-. ..|+.++|+||+|++..||.-|.+|+.+
T Consensus 163 KLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d----~tyd~R~D~WsLGITaIEladG~PPl~D 230 (953)
T KOG0587|consen 163 KLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPD----ATYDYRSDLWSLGITAIEMAEGAPPLCD 230 (953)
T ss_pred EEeeeeeeeeeecccccccCcCCCcccccceeeecccCCC----CCcccccchhhccceeehhcCCCCCccC
Confidence 999999987664 2345678999999999987654322 2378899999999999999999999853
|
|
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-30 Score=267.93 Aligned_cols=200 Identities=15% Similarity=0.208 Sum_probs=163.6
Q ss_pred CCCccceeecCCcceEEEEEEcC--CcEEEEEEeecccc-----------CHHHHHHHHHHHhh-cCCCCcccceeEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGILEG--GIPVVIKRIDLQSV-----------KTEAYLLELDFFSK-VSHARLVPLLGHCME 600 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~--g~~vavK~l~~~~~-----------~~~~~~~E~~~l~~-l~H~niv~l~~~~~~ 600 (766)
+|+..+.||+|+||.||+|.... ++.+|+|.+..... ..+++.+|+.++.+ ++||||+++++++.+
T Consensus 1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 80 (269)
T cd08528 1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE 80 (269)
T ss_pred CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence 47778999999999999999654 78999998853211 13457789998875 799999999998876
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
++..++||||+++++|.+++..... ....+++..++.++.|++.||.|||+. .+|+||||||+||++++++.+|
T Consensus 81 -~~~~~lv~e~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~~~~ 154 (269)
T cd08528 81 -NDRLYIVMDLIEGAPLGEHFNSLKE---KKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKVT 154 (269)
T ss_pred -CCeEEEEEecCCCCcHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCCcEE
Confidence 5689999999999999998854211 113589999999999999999999963 2799999999999999999999
Q ss_pred eccchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||.+...... .....++..|++||...... ++.++|||||||++|||++|+.||...
T Consensus 155 l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~---------~~~~~Dv~slG~ll~~l~~g~~p~~~~ 216 (269)
T cd08528 155 ITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEP---------YGEKADVWAFGCILYQMCTLQPPFYST 216 (269)
T ss_pred EecccceeecccccccccccCcccCcChhhhcCCC---------CchHHHHHHHHHHHHHHHhCCCccccc
Confidence 9999999765322 23445778899999876543 478999999999999999999998543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-30 Score=265.82 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=155.9
Q ss_pred ceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHH-hhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFF-SKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l-~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.||+|+||.||+|.. .+|+.||||.++..... ...+..|..++ ...+||||+++++++.. ++..|+|+||++
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~ 80 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQS-KDYLYLVMEYLN 80 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEc-CCeEEEEEeccC
Confidence 5689999999999985 56899999998654321 23455565554 44589999999997765 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.... .+++..+..++.|++.||.|||+. +|+||||||+||++++++.+||+|||+++....
T Consensus 81 ~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~- 149 (260)
T cd05611 81 GGDCASLIKTLG-------GLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE- 149 (260)
T ss_pred CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceeccc-
Confidence 999999997543 388999999999999999999997 999999999999999999999999999876432
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....++..|++||...... ++.++|||||||++|||+||+.||...
T Consensus 150 ~~~~~~~~~y~~pe~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 196 (260)
T cd05611 150 NKKFVGTPDYLAPETILGVG---------DDKMSDWWSLGCVIFEFLFGYPPFHAE 196 (260)
T ss_pred cccCCCCcCccChhhhcCCC---------CcchhhhHHHHHHHHHHHHCCCCCCCC
Confidence 22335677899999876543 368999999999999999999999543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-31 Score=279.30 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=170.3
Q ss_pred CCCccceeecCCcceEEEEEEcC-CcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~-g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+++.+..+|-|+||.|-...... ...+|+|.+++... +.+....|-.+|.+.+.|.||++|.-|.+ .+.+|+.|
T Consensus 421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd-~kyvYmLm 499 (732)
T KOG0614|consen 421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRD-SKYVYMLM 499 (732)
T ss_pred hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhcc-chhhhhhH
Confidence 44556789999999999888554 33589998876432 35678999999999999999999986655 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|-|-||+|+..|+.++. ++..+...|+..+.+|++|||++ +||.|||||+|.++|.+|.+||.|||+|+.
T Consensus 500 EaClGGElWTiLrdRg~-------Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKk 569 (732)
T KOG0614|consen 500 EACLGGELWTILRDRGS-------FDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKK 569 (732)
T ss_pred HhhcCchhhhhhhhcCC-------cccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHH
Confidence 99999999999987765 88888999999999999999998 999999999999999999999999999998
Q ss_pred c--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 Q--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+ +..+.+.+||+.|.|||++....+ +.++|.||+|+++||++||++||...
T Consensus 570 i~~g~KTwTFcGTpEYVAPEIILnKGH---------D~avDyWaLGIli~ELL~G~pPFs~~ 622 (732)
T KOG0614|consen 570 IGSGRKTWTFCGTPEYVAPEIILNKGH---------DRAVDYWALGILIYELLTGSPPFSGV 622 (732)
T ss_pred hccCCceeeecCCcccccchhhhccCc---------chhhHHHHHHHHHHHHHcCCCCCCCC
Confidence 7 456778999999999999887664 56889999999999999999999433
|
|
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=262.40 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=169.9
Q ss_pred CCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
+|+..+.||+|++|.||++... +++.||+|++..... ..+.+.+|++++++++||||+++++++.. ++..++++||+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~l~~e~~ 79 (253)
T cd05122 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLK-KDELWIVMEFC 79 (253)
T ss_pred CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEec-CCeEEEEEecC
Confidence 4778899999999999999964 789999999976554 35689999999999999999999997765 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||++++++.+||+|||.+.....
T Consensus 80 ~~~~L~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~ 150 (253)
T cd05122 80 SGGSLKDLLKSTN------QTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSD 150 (253)
T ss_pred CCCcHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccc
Confidence 9999999987642 2489999999999999999999997 999999999999999999999999999877644
Q ss_pred CC--ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 DA--HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~~--~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ....++..|++||...... .+.++||||||+++|||++|+.||...
T Consensus 151 ~~~~~~~~~~~~~~~PE~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 200 (253)
T cd05122 151 TKARNTMVGTPYWMAPEVINGKP---------YDYKADIWSLGITAIELAEGKPPYSEL 200 (253)
T ss_pred cccccceecCCcccCHHHHcCCC---------CCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 32 4456778899999875443 478999999999999999999998644
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-30 Score=278.55 Aligned_cols=197 Identities=18% Similarity=0.251 Sum_probs=164.4
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecC----Cc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERE----NE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~ 604 (766)
.++|...+.||+|+||.||+|+ ..+++.||||++.... ....++.+|+.++++++||||+++++++.... ..
T Consensus 4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 83 (337)
T cd07858 4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND 83 (337)
T ss_pred ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence 3568889999999999999998 4678999999986532 12456788999999999999999999775422 34
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+||||+. ++|.+++...+ .+++.....++.|++.||+|||+. +++||||||+||+++.++.+||+||
T Consensus 84 ~~lv~e~~~-~~L~~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Df 152 (337)
T cd07858 84 VYIVYELMD-TDLHQIIRSSQ-------TLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDF 152 (337)
T ss_pred EEEEEeCCC-CCHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcC
Confidence 799999997 68998886543 389999999999999999999997 9999999999999999999999999
Q ss_pred hhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+++..... .....++..|+|||....... ++.++|||||||++|||++|+.||..
T Consensus 153 g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~~g~~pf~~ 211 (337)
T cd07858 153 GLARTTSEKGDFMTEYVVTRWYRAPELLLNCSE--------YTTAIDVWSVGCIFAELLGRKPLFPG 211 (337)
T ss_pred ccccccCCCcccccccccccCccChHHHhcCCC--------CCCcccHHHHHHHHHHHHcCCCCCCC
Confidence 999865322 233467889999997654321 46899999999999999999999854
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-30 Score=269.08 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=164.0
Q ss_pred CCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC--HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
|+..+.||+|++|+||+|+.. +++.||||++...... .....+|+..+++++ ||||+++++++.. ++..++||||
T Consensus 1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-~~~~~lv~e~ 79 (283)
T cd07830 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRE-NDELYFVFEY 79 (283)
T ss_pred CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhc-CCcEEEEEec
Confidence 566789999999999999964 5889999998654332 334567999999999 9999999998766 6789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+ +|+|.+++..... ..++|.++..++.|++.||.|||+. +++|+||||+||++++++.+||+|||+++...
T Consensus 80 ~-~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~ 150 (283)
T cd07830 80 M-EGNLYQLMKDRKG-----KPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIR 150 (283)
T ss_pred C-CCCHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceecc
Confidence 9 7899999876532 3489999999999999999999997 99999999999999999999999999997663
Q ss_pred C--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 G--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
. ......++..|+|||.+..... ++.++|||||||+++||+||+.||..
T Consensus 151 ~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Di~s~G~~l~el~~g~~~~~~ 201 (283)
T cd07830 151 SRPPYTDYVSTRWYRAPEILLRSTS--------YSSPVDIWALGCIMAELYTLRPLFPG 201 (283)
T ss_pred CCCCcCCCCCcccccCceeeecCcC--------cCCccchhhHHHHHHHHHhCCCccCC
Confidence 3 2234557889999998754321 47899999999999999999999843
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-30 Score=271.24 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=160.9
Q ss_pred cceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 539 ANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
..+||+|+||.||+|.. .++..||||++...... .+.+.+|+.++++++||||+++++++.. .+..++||||+++++
T Consensus 25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~ 103 (292)
T cd06657 25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-GDELWVVMEFLEGGA 103 (292)
T ss_pred HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEe-CCEEEEEEecCCCCc
Confidence 46799999999999985 57899999998654333 5578999999999999999999997765 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC---
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--- 693 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--- 693 (766)
|.+++... .+++.....++.|++.||+|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 104 L~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~ 172 (292)
T cd06657 104 LTDIVTHT--------RMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 172 (292)
T ss_pred HHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccccc
Confidence 99987532 378999999999999999999997 9999999999999999999999999988755322
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.....++..|++||...... ++.++||||+||++|||++|+.||..
T Consensus 173 ~~~~~~~~~y~~pE~~~~~~---------~~~~~Dv~slGvil~el~tg~~p~~~ 218 (292)
T cd06657 173 RKSLVGTPYWMAPELISRLP---------YGPEVDIWSLGIMVIEMVDGEPPYFN 218 (292)
T ss_pred ccccccCccccCHHHhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 12235678899999875433 46799999999999999999999854
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=271.16 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=162.4
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc--CHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+.. +++.||||.++.... ...++.+|++++.+.. ||||++++++|.+ +...|+||
T Consensus 15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-~~~~~~v~ 93 (296)
T cd06618 15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFIT-DSDVFICM 93 (296)
T ss_pred chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeec-CCeEEEEe
Confidence 56788899999999999999965 489999999975432 2456778888777775 9999999998876 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++ +++.+++.... ..+++..+..++.|++.||+|||+. .+|+||||||+||++++++.+||+|||++..
T Consensus 94 e~~~-~~l~~l~~~~~------~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~~ 164 (296)
T cd06618 94 ELMS-TCLDKLLKRIQ------GPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGR 164 (296)
T ss_pred eccC-cCHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccchh
Confidence 9996 47877765432 2489999999999999999999963 2899999999999999999999999999876
Q ss_pred cCCC--CccceeeecccCCCCCCCCc-eeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGS-SGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~-~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....++..|+|||.+.... .+. ++.++|||||||++|||++|+.||..
T Consensus 165 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~------~~~~~Di~slG~il~el~~g~~p~~~ 220 (296)
T cd06618 165 LVDSKAKTRSAGCAAYMAPERIDPPDPNPK------YDIRADVWSLGISLVELATGQFPYKN 220 (296)
T ss_pred ccCCCcccCCCCCccccCHhhcCCCCCccc------cccchhHHHHHHHHHHHHhCCCCCCc
Confidence 5322 22234567899999876543 111 57899999999999999999999954
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-31 Score=251.60 Aligned_cols=208 Identities=18% Similarity=0.225 Sum_probs=175.8
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEecC-CcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMERE-NEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~-~~~~lV~ 609 (766)
.++|+..+++|+|.|++||.|. ..+.++++||.++.- +.+.+.||++||..++ |||||++++...+.. ....||+
T Consensus 37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV--kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiF 114 (338)
T KOG0668|consen 37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV--KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIF 114 (338)
T ss_pred cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH--HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHh
Confidence 4678889999999999999998 677889999998643 3567899999999997 999999999876543 3478999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~ 688 (766)
||+.+-|...+.. .++..++..++.++++||.|+|+. +|+|||+||.|++||. .-..+++|+|+|.
T Consensus 115 E~v~n~Dfk~ly~----------tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAE 181 (338)
T KOG0668|consen 115 EYVNNTDFKQLYP----------TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAE 181 (338)
T ss_pred hhhccccHHHHhh----------hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHh
Confidence 9999988776552 377778899999999999999998 9999999999999995 4679999999998
Q ss_pred hcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEEE
Q 004248 689 AQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKLC 763 (766)
Q Consensus 689 ~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~~ 763 (766)
... .+....+.+++|.-||.+..... ++..-|+|||||++.+|+..|.||+.+..+.+|+..|.|++
T Consensus 182 FYHp~~eYnVRVASRyfKGPELLVdy~~--------YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVL 250 (338)
T KOG0668|consen 182 FYHPGKEYNVRVASRYFKGPELLVDYQM--------YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVL 250 (338)
T ss_pred hcCCCceeeeeeehhhcCCchheeechh--------ccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHh
Confidence 763 33455677899999998754322 56678999999999999999999999999988888877654
|
|
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-30 Score=281.91 Aligned_cols=191 Identities=20% Similarity=0.319 Sum_probs=161.1
Q ss_pred ccceeecCCcceEEEEEEc--CC--cEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 538 DANLIKNGHSGDLFRGILE--GG--IPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~--~g--~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
..++||+|.||+|++|.|. .| ..||||.++..... ..+|++|+.+|.+|+|||+|+|||+..+ ....+|+|.
T Consensus 114 l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~--qp~mMV~EL 191 (1039)
T KOG0199|consen 114 LYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD--QPAMMVFEL 191 (1039)
T ss_pred HHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc--chhhHHhhh
Confidence 3578999999999999964 34 47999999766544 5689999999999999999999998875 578999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
++.|+|.+.|++... ..|-......|+.|||.||.||..+ +.|||||.++|+|+-..-.+||+|||+.+.++
T Consensus 192 aplGSLldrLrka~~-----~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg 263 (1039)
T KOG0199|consen 192 APLGSLLDRLRKAKK-----AILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALG 263 (1039)
T ss_pred cccchHHHHHhhccc-----cceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccC
Confidence 999999999987322 3477888899999999999999998 99999999999999999999999999999875
Q ss_pred CCCccce------eeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 692 GDAHQSR------ITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 692 ~~~~~~~------~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
.....+. .-..|.|||.+.... ++.++|||+|||++|||+| |..|+.
T Consensus 264 ~ned~Yvm~p~rkvPfAWCaPEsLrh~k---------FShaSDvWmyGVTiWEMFtyGEePW~ 317 (1039)
T KOG0199|consen 264 ENEDMYVMAPQRKVPFAWCAPESLRHRK---------FSHASDVWMYGVTIWEMFTYGEEPWV 317 (1039)
T ss_pred CCCcceEecCCCcCcccccCHhHhcccc---------ccccchhhhhhhhHHhhhccCCCCCC
Confidence 4332222 233678899876554 6889999999999999998 788984
|
|
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=275.56 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=160.5
Q ss_pred CCCC-ccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---------------HHHHHHHHHHHhhcCCCCccccee
Q 004248 534 GDFS-DANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---------------TEAYLLELDFFSKVSHARLVPLLG 596 (766)
Q Consensus 534 ~~~~-~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---------------~~~~~~E~~~l~~l~H~niv~l~~ 596 (766)
++|. ..+.||+|+||.||+|.. .+++.||||++...... ...+.+|++++++++||||+++++
T Consensus 8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~ 87 (335)
T PTZ00024 8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD 87 (335)
T ss_pred cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence 3454 347799999999999995 57899999998643221 124789999999999999999999
Q ss_pred EEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC
Q 004248 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK 676 (766)
Q Consensus 597 ~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~ 676 (766)
++.. ++..++||||++ |+|.+++.... .+++.....++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 88 ~~~~-~~~~~lv~e~~~-~~l~~~l~~~~-------~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~ 155 (335)
T PTZ00024 88 VYVE-GDFINLVMDIMA-SDLKKVVDRKI-------RLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSK 155 (335)
T ss_pred EEec-CCcEEEEEeccc-cCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCC
Confidence 8765 568999999997 69999986543 388999999999999999999987 99999999999999999
Q ss_pred CcEEeccchhhhhcCC-----------------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHH
Q 004248 677 FEVRLGSLSEVCAQGG-----------------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~~-----------------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~el 739 (766)
+.+|++|||.++.... ......++..|+|||...+... ++.++||||+||++|||
T Consensus 156 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Dv~slG~~l~el 227 (335)
T PTZ00024 156 GICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEK--------YHFAVDMWSVGCIFAEL 227 (335)
T ss_pred CCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCC--------CCcHHHHHHHHHHHHHH
Confidence 9999999999875431 1112345778999998754321 46899999999999999
Q ss_pred hcCCCCCCCC
Q 004248 740 IFNNHLNLSS 749 (766)
Q Consensus 740 ltG~~p~~~~ 749 (766)
+||+.||...
T Consensus 228 ~tg~~p~~~~ 237 (335)
T PTZ00024 228 LTGKPLFPGE 237 (335)
T ss_pred HhCCCCCCCC
Confidence 9999998543
|
|
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=273.87 Aligned_cols=194 Identities=20% Similarity=0.179 Sum_probs=158.2
Q ss_pred ceeecC--CcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNG--HSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G--~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
..||+| +||+||+|+. .+|+.||||.+...... .+.+.+|+.+++.++||||+++++++.. ++..++||||++
T Consensus 4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-~~~~~~v~e~~~ 82 (328)
T cd08226 4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTT-GSWLWVISPFMA 82 (328)
T ss_pred HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEec-CCceEEEEeccc
Confidence 456766 8999999995 57999999998754332 4578899999999999999999998765 567899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC-
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG- 692 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~- 692 (766)
+|+|.+++.+... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|++||+.+.....
T Consensus 83 ~~~l~~~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~ 154 (328)
T cd08226 83 YGSANSLLKTYFP-----EGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRN 154 (328)
T ss_pred CCCHHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhcc
Confidence 9999999876432 2489999999999999999999987 999999999999999999999999986543211
Q ss_pred --C-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 --D-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 --~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....++..|++||.......+ ++.++|||||||++|||++|+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~DiwslG~~l~el~~g~~p~~~~ 213 (328)
T cd08226 155 GQKAKVVYDFPQFSTSVLPWLSPELLRQDLYG-------YNVKSDIYSVGITACELATGRVPFQDM 213 (328)
T ss_pred CccccccccccccccCccCccChhhhcCCCCC-------CCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 0 0111234569999987654332 478999999999999999999999543
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=265.03 Aligned_cols=188 Identities=22% Similarity=0.218 Sum_probs=159.8
Q ss_pred eecCCcceEEEEEEc-CCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGILE-GGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||.||+|+.. +|+.||+|.+..... ..+.+.+|++++++++||||+++++.+.. ++..|+||||+++|+
T Consensus 1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~ 79 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG-KKNLYLVMEYLPGGD 79 (265)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec-CcEEEEEEecCCCCc
Confidence 689999999999965 599999999865433 24578999999999999999999986654 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC---
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--- 693 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--- 693 (766)
|.+++.+.. .+++..+..++.|++.||+|||+. +++||||+|+||++++++.+||+|||++......
T Consensus 80 L~~~l~~~~-------~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~ 149 (265)
T cd05579 80 LASLLENVG-------SLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQI 149 (265)
T ss_pred HHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCccc
Confidence 999997543 389999999999999999999987 9999999999999999999999999998764221
Q ss_pred --------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 --------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 --------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....++..|++||...... .+.++|||||||++||++||+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~Pe~~~~~~---------~~~~~Dv~slG~~~~~l~~g~~p~~~~ 204 (265)
T cd05579 150 NLNDDEKEDKRIVGTPDYIAPEVILGQG---------HSKTVDWWSLGCILYEFLVGIPPFHGE 204 (265)
T ss_pred ccccccccccCcccCccccCHHHhcCCC---------CCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 12234677899999875443 367999999999999999999998544
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=269.00 Aligned_cols=197 Identities=20% Similarity=0.287 Sum_probs=163.1
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|...+.||+|+||+||+|+. .+|+.||+|++...... .+.+.+|++++++++|||++++++++.+ .+..|+|||
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 101 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLK-EHTAWLVME 101 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEe-CCEEEEEEe
Confidence 55567899999999999985 56899999998654322 3468899999999999999999998876 567999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+. |++.+++.... ..++|.++..++.|++.|++|||+. +|+||||||+||++++++.+||+|||++...
T Consensus 102 ~~~-~~l~~~l~~~~------~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~ 171 (313)
T cd06633 102 YCL-GSASDLLEVHK------KPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKS 171 (313)
T ss_pred cCC-CCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCccc
Confidence 996 58888876433 2489999999999999999999987 9999999999999999999999999998654
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. .....++..|+|||.+.....+. ++.++|||||||++|||++|+.||...+
T Consensus 172 ~~-~~~~~~~~~y~aPE~~~~~~~~~------~~~~sDv~slGvil~el~~g~~p~~~~~ 224 (313)
T cd06633 172 SP-ANSFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFNMN 224 (313)
T ss_pred CC-CCCccccccccChhhccccCCCC------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 22 23346788899999874322122 5789999999999999999999986543
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=261.43 Aligned_cols=197 Identities=22% Similarity=0.278 Sum_probs=169.2
Q ss_pred CCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~lV~ 609 (766)
+|+..+.||+|++|.||+|... +++.|++|++..... ..+.+.+|++++++++||||+++++.+.... +..++|+
T Consensus 1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~ 80 (260)
T cd06606 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL 80 (260)
T ss_pred CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence 4777899999999999999965 789999999876543 3567999999999999999999999776531 5789999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|.+++.... .++|.++..++.|+++||+|||+. +++||||+|+||+++.++.+||+|||.+..
T Consensus 81 e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~ 150 (260)
T cd06606 81 EYVSGGSLSSLLKKFG-------KLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKR 150 (260)
T ss_pred EecCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEe
Confidence 9999999999997543 489999999999999999999997 999999999999999999999999999877
Q ss_pred cCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.... .....++..|.+||...... .+.++|||||||++|||++|+.||...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~y~~pE~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~~ 207 (260)
T cd06606 151 LGDIETGEGTGSVRGTPYWMAPEVIRGEE---------YGRAADIWSLGCTVIEMATGKPPWSELG 207 (260)
T ss_pred cccccccccccCCCCCccccCHhhhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 6433 23345778899999875543 4789999999999999999999996543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=270.09 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=148.5
Q ss_pred CCCCccceeecCCcceEEEEEEcC----CcEEEEEEeeccccC--H----------HHHHHHHHHHhhcCCCCcccceeE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSVK--T----------EAYLLELDFFSKVSHARLVPLLGH 597 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~--~----------~~~~~E~~~l~~l~H~niv~l~~~ 597 (766)
+.|...++||+|+||.||+|...+ +..+|+|........ . .....+...+..+.|+||++++++
T Consensus 12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~ 91 (294)
T PHA02882 12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC 91 (294)
T ss_pred CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence 568889999999999999999543 456666654322211 1 112334455667799999999986
Q ss_pred EEecCC---cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC
Q 004248 598 CMEREN---EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (766)
Q Consensus 598 ~~~~~~---~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~ 674 (766)
+..... ..++++|++.. ++.+.+.... ..++..+..++.|+++||+|||+. +|+||||||+|||++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~ 160 (294)
T PHA02882 92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRIK-------CKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVD 160 (294)
T ss_pred eeEecCCceEEEEEEehhcc-CHHHHHHhhc-------cCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEc
Confidence 654222 34778887753 6666664332 257888899999999999999997 999999999999999
Q ss_pred CCCcEEeccchhhhhcCC----------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 675 DKFEVRLGSLSEVCAQGG----------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 675 ~~~~~kl~DFG~a~~~~~----------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
.++.+||+|||+|+.... ......+|+.|+|||...+.. ++.++|||||||++|||+||+.
T Consensus 161 ~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~---------~~~~~DiwSlG~~l~el~~g~~ 231 (294)
T PHA02882 161 GNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGAC---------VTRRGDLESLGYCMLKWAGIKL 231 (294)
T ss_pred CCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCC---------CCcHHHHHHHHHHHHHHHhCCC
Confidence 999999999999976521 112235899999999875544 4789999999999999999999
Q ss_pred CCCCC
Q 004248 745 LNLSS 749 (766)
Q Consensus 745 p~~~~ 749 (766)
||...
T Consensus 232 P~~~~ 236 (294)
T PHA02882 232 PWKGF 236 (294)
T ss_pred CCCcc
Confidence 99544
|
|
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=272.14 Aligned_cols=191 Identities=20% Similarity=0.173 Sum_probs=153.6
Q ss_pred eecCCcceEEEEEEcCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChh
Q 004248 542 IKNGHSGDLFRGILEGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618 (766)
Q Consensus 542 ig~G~~g~Vy~~~~~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~ 618 (766)
+|.|+++.||++. .+++.||||++.... ...+.+.+|++++++++||||+++++++.+ .+..+++|||+++|+|.
T Consensus 10 ~~~~~~v~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~-~~~~~~~~e~~~~~~l~ 87 (314)
T cd08216 10 FEDLMIVHLAKHK-PTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIV-DSELYVVSPLMAYGSCE 87 (314)
T ss_pred hcCCceEEEEEec-CCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeec-CCeEEEEEeccCCCCHH
Confidence 3444444444444 378999999997542 224679999999999999999999997765 56799999999999999
Q ss_pred hhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC------
Q 004248 619 SSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG------ 692 (766)
Q Consensus 619 ~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~------ 692 (766)
+++.+... ..+++.....++.|++.||+|||+. +|+||||||+||+++.++.+|++|||.+.....
T Consensus 88 ~~l~~~~~-----~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~ 159 (314)
T cd08216 88 DLLKTHFP-----EGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQR 159 (314)
T ss_pred HHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeecccccccc
Confidence 99975432 2488999999999999999999998 999999999999999999999999998864421
Q ss_pred ----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 ----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
......++..|+|||.+.....+ ++.++|||||||++|||++|+.||...
T Consensus 160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~Diws~G~il~el~~g~~pf~~~ 213 (314)
T cd08216 160 VVHDFPKSSVKNLPWLSPEVLQQNLQG-------YNEKSDIYSVGITACELANGHVPFKDM 213 (314)
T ss_pred ccccccccccccccccCHHHhcCCCCC-------CCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence 11223457789999987654322 478999999999999999999999643
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=259.95 Aligned_cols=195 Identities=21% Similarity=0.326 Sum_probs=167.2
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|++|.||+|+. .+++.||+|.+..... ..+.+.+|++++++++|||++++++++.. ++..++|||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e 79 (254)
T cd06627 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIET-SDSLYIILE 79 (254)
T ss_pred CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEe-CCEEEEEEe
Confidence 477789999999999999985 4688999999976543 24679999999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++.... .+++..+..++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||.+...
T Consensus 80 ~~~~~~L~~~~~~~~-------~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~ 149 (254)
T cd06627 80 YAENGSLRQIIKKFG-------PFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKL 149 (254)
T ss_pred cCCCCcHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceec
Confidence 999999999987543 389999999999999999999987 9999999999999999999999999999866
Q ss_pred CCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ....++..|++||...... .+.++||||+|+++|||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~~y~~pe~~~~~~---------~~~~~Dv~~lG~~l~~l~~g~~p~~~~ 202 (254)
T cd06627 150 NDVSKDDASVVGTPYWMAPEVIEMSG---------ASTASDIWSLGCTVIELLTGNPPYYDL 202 (254)
T ss_pred CCCcccccccccchhhcCHhhhcCCC---------CCcchhHHHHHHHHHHHHhCCCCCCCc
Confidence 4322 2345678899999865433 367999999999999999999998543
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=262.63 Aligned_cols=200 Identities=21% Similarity=0.271 Sum_probs=168.2
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||+++ ..+++.+|+|++..... ...++.+|++++++++||||+++++++.. ....++|||
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e 79 (256)
T cd08530 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD-GNKLCIVME 79 (256)
T ss_pred CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhcc-CCEEEEEeh
Confidence 47788999999999999998 45788999999875432 24578899999999999999999997765 468999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++.+... ....+++..+..++.|++.||+|||+. +++||||||+||++++++.+|++|||+++..
T Consensus 80 ~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~ 153 (256)
T cd08530 80 YAPFGDLSKAISKRKK---KRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVL 153 (256)
T ss_pred hcCCCCHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhh
Confidence 9999999999876321 123589999999999999999999987 9999999999999999999999999999876
Q ss_pred CCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....++..|++||...... ++.++|+||+|+++|||++|+.||...+
T Consensus 154 ~~~~~~~~~~~~~~~~Pe~~~~~~---------~~~~~D~~slG~~~~~l~~g~~p~~~~~ 205 (256)
T cd08530 154 KKNMAKTQIGTPHYMAPEVWKGRP---------YSYKSDIWSLGCLLYEMATFAPPFEARS 205 (256)
T ss_pred ccCCcccccCCccccCHHHHCCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 433 22345678899999875433 4678999999999999999999995443
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=264.35 Aligned_cols=195 Identities=19% Similarity=0.256 Sum_probs=160.3
Q ss_pred CCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC---HHHHHHHHHHHhhc---CCCCcccceeEEEecCC----c
Q 004248 536 FSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK---TEAYLLELDFFSKV---SHARLVPLLGHCMEREN----E 604 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l---~H~niv~l~~~~~~~~~----~ 604 (766)
|+..+.||+|+||.||+|+.. +++.||+|+++..... ...+.+|+++++++ +||||+++++++...+. .
T Consensus 1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~ 80 (287)
T cd07838 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK 80 (287)
T ss_pred CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence 567889999999999999965 5899999999643222 34677888877766 59999999998876321 2
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.+++|||++ ++|.+++.+... ..++|.++..++.|+++||+|||+. +++||||||+||++++++.+||+||
T Consensus 81 ~~l~~e~~~-~~l~~~l~~~~~-----~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~df 151 (287)
T cd07838 81 LTLVFEHVD-QDLATYLSKCPK-----PGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADF 151 (287)
T ss_pred eEEEehhcc-cCHHHHHHHccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEecc
Confidence 899999998 489998875432 2489999999999999999999997 8999999999999999999999999
Q ss_pred hhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|++...... .....++..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 152 g~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~---------~~~~~Di~s~G~~l~~l~~~~~~~~~ 208 (287)
T cd07838 152 GLARIYSFEMALTSVVVTLWYRAPEVLLQSS---------YATPVDMWSVGCIFAELFRRRPLFRG 208 (287)
T ss_pred CcceeccCCcccccccccccccChHHhccCC---------CCCcchhhhHHHHHHHHHhCCCcccC
Confidence 998775322 22345678899999875443 46799999999999999999988854
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=273.71 Aligned_cols=196 Identities=20% Similarity=0.265 Sum_probs=166.1
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecC----CcEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERE----NEKF 606 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~~ 606 (766)
+|+..+.||+|+||.||+|+. .+++.||||++.... ...+.+.+|++++++++||||+++++++.... ...|
T Consensus 1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~ 80 (330)
T cd07834 1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY 80 (330)
T ss_pred CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence 477889999999999999995 458999999986543 22567999999999999999999999876532 3689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||++ ++|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 81 lv~e~~~-~~l~~~l~~~~-------~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~ 149 (330)
T cd07834 81 IVTELME-TDLHKVIKSPQ-------PLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGL 149 (330)
T ss_pred EEecchh-hhHHHHHhCCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCc
Confidence 9999998 58999886543 489999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+...... .....++..|+|||.+..... ++.++|||||||++|||++|+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~sDi~slG~il~~l~~g~~pf~~~ 210 (330)
T cd07834 150 ARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSR--------YTKAIDIWSVGCIFAELLTRKPLFPGR 210 (330)
T ss_pred eEeecccccccccccccccccCcCCceeeecccC--------CCcchhHHHHHHHHHHHHcCCCCcCCC
Confidence 9865322 234467889999998765421 578999999999999999999999544
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=269.44 Aligned_cols=195 Identities=23% Similarity=0.301 Sum_probs=161.8
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
|+..+.||+|+||.||+|+. .++..||+|.+..... ..+++.+|++++++++|||++++++++.. .+..++|||
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 95 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-EHTAWLVME 95 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEc-CCeeEEEEE
Confidence 66678899999999999995 5688999999864322 13568899999999999999999998776 567899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+. |++.+++.... ..+++.++..++.|++.|+.|||+. +++||||||+||+++.++.+||+|||++...
T Consensus 96 ~~~-~~l~~~~~~~~------~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~ 165 (308)
T cd06634 96 YCL-GSASDLLEVHK------KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM 165 (308)
T ss_pred ccC-CCHHHHHHHcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceee
Confidence 997 68888775432 2488999999999999999999987 9999999999999999999999999998765
Q ss_pred CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
... ....++..|+|||.......+. ++.++|||||||++|||++|+.||..
T Consensus 166 ~~~-~~~~~~~~y~aPE~~~~~~~~~------~~~~~Di~slG~il~el~~g~~p~~~ 216 (308)
T cd06634 166 APA-NXFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFN 216 (308)
T ss_pred cCc-ccccCCccccCHHHHhhcccCC------CCcccchHHHHHHHHHHHcCCCCCcc
Confidence 332 2345678899999864322221 47899999999999999999999854
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-30 Score=277.54 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=166.3
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecC-----
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERE----- 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----- 602 (766)
..++|+..+.||+|++|.||+|+. .+++.||||++..... ..+.+.+|+.++++++||||+++++++...+
T Consensus 13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 92 (343)
T cd07851 13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF 92 (343)
T ss_pred ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence 356788999999999999999995 4688999999864321 2456788999999999999999998665422
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
...++|+||+ +++|.+++... .+++.++..++.|+++||+|||+. +|+||||||+||++++++.+||+
T Consensus 93 ~~~~lv~e~~-~~~L~~~~~~~--------~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~ 160 (343)
T cd07851 93 QDVYLVTHLM-GADLNNIVKCQ--------KLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKIL 160 (343)
T ss_pred ccEEEEEecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEc
Confidence 1389999999 56999988642 389999999999999999999997 99999999999999999999999
Q ss_pred cchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||++...........++..|+|||....... ++.++|||||||++|||+||+.||...
T Consensus 161 dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DvwslGv~l~elltg~~pf~~~ 219 (343)
T cd07851 161 DFGLARHTDDEMTGYVATRWYRAPEIMLNWMH--------YNQTVDIWSVGCIMAELLTGKTLFPGS 219 (343)
T ss_pred cccccccccccccCCcccccccCHHHHhCCCC--------CCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999876555555677889999997653221 578999999999999999999999543
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-30 Score=294.93 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=158.8
Q ss_pred HHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccc--cCHHHHHHHHHHHhhcCCCCcccceeEEEec-----
Q 004248 530 LAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS--VKTEAYLLELDFFSKVSHARLVPLLGHCMER----- 601 (766)
Q Consensus 530 ~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~----- 601 (766)
-+...+|++.+++|+||||.|||++ .-||+.+|||+|.... .....+.+|++++++++|||||+++..+.+.
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~ 554 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT 554 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence 4566789999999999999999999 5689999999997664 2255789999999999999999887542110
Q ss_pred --------------------------------------------------------------------------------
Q 004248 602 -------------------------------------------------------------------------------- 601 (766)
Q Consensus 602 -------------------------------------------------------------------------------- 601 (766)
T Consensus 555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS 634 (1351)
T KOG1035|consen 555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS 634 (1351)
T ss_pred cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence
Q ss_pred -------------------------C--------CcEEEEEeeCCCCChhhhhhccCCCCCcCCCC-CHHHHHHHHHHHH
Q 004248 602 -------------------------E--------NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSL-DWITRLKIAIGAA 647 (766)
Q Consensus 602 -------------------------~--------~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l-~~~~~~~i~~~ia 647 (766)
+ ..+|+=||||+.-.+.++++++.. . .-...++++.+|+
T Consensus 635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~-------~~~~d~~wrLFreIl 707 (1351)
T KOG1035|consen 635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHF-------NSQRDEAWRLFREIL 707 (1351)
T ss_pred ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhccc-------chhhHHHHHHHHHHH
Confidence 0 125788999998777777765432 1 3455688999999
Q ss_pred HHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc----------C-----------CCCccceeeecccCC
Q 004248 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ----------G-----------GDAHQSRITRLLRLP 706 (766)
Q Consensus 648 ~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~----------~-----------~~~~~~~~t~~y~aP 706 (766)
.||+|+|+. +||||||||.||++|++..+||+|||+|+.. . ...+..+||..|+||
T Consensus 708 EGLaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAP 784 (1351)
T KOG1035|consen 708 EGLAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAP 784 (1351)
T ss_pred HHHHHHHhC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecH
Confidence 999999998 8999999999999999999999999999761 0 123456899999999
Q ss_pred CCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 707 QSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 707 e~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
|....... ..|+.|+|+||+|||++||+.
T Consensus 785 Ell~~~~~------~~Yn~KiDmYSLGIVlFEM~y 813 (1351)
T KOG1035|consen 785 ELLSDTSS------NKYNSKIDMYSLGIVLFEMLY 813 (1351)
T ss_pred HHhccccc------ccccchhhhHHHHHHHHHHhc
Confidence 98765432 127999999999999999996
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=275.49 Aligned_cols=196 Identities=17% Similarity=0.282 Sum_probs=160.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecC---------
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERE--------- 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~--------- 602 (766)
++|...+.||+|+||.||+|.. .+|+.||+|++...... .+.+.+|++++++++||||+++++++...+
T Consensus 5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (342)
T cd07854 5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS 84 (342)
T ss_pred cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence 5788899999999999999984 67899999998665443 567889999999999999999998654322
Q ss_pred ----CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CC
Q 004248 603 ----NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KF 677 (766)
Q Consensus 603 ----~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~ 677 (766)
...|+||||++ ++|.+++... .+++.....++.|++.||+|||+. +|+||||||+||+++. ++
T Consensus 85 ~~~~~~~~lv~e~~~-~~L~~~~~~~--------~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~ 152 (342)
T cd07854 85 LTELNSVYIVQEYME-TDLANVLEQG--------PLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDL 152 (342)
T ss_pred ccccceEEEEeeccc-ccHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCc
Confidence 24789999998 5998887532 388999999999999999999987 9999999999999984 56
Q ss_pred cEEeccchhhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+|++|||.++..... .....++..|+|||....... ++.++|||||||++|||++|+.||...
T Consensus 153 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwSlGvil~el~~g~~pf~~~ 222 (342)
T cd07854 153 VLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNN--------YTKAIDMWAAGCIFAEMLTGKPLFAGA 222 (342)
T ss_pred eEEECCcccceecCCccccccccccccccccccCHHHHhCccc--------cCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 7999999998754211 122356888999997643221 468999999999999999999999543
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=258.93 Aligned_cols=179 Identities=19% Similarity=0.180 Sum_probs=151.1
Q ss_pred CCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhc
Q 004248 545 GHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYR 623 (766)
Q Consensus 545 G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~ 623 (766)
|.||.||+++ ..+++.||+|++.... .+.+|...+....||||+++++++.+ .+..++||||+++|+|.+++.+
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~ 78 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSS----EYSRERLTIIPHCVPNMVCLHKYIVS-EDSVFLVLQHAEGGKLWSHISK 78 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchh----hhhhHHHHHHhcCCCceeehhhheec-CCeEEEEEecCCCCCHHHHHHH
Confidence 8899999999 4678999999986543 34456666666789999999997765 5689999999999999999975
Q ss_pred cCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCccceeeecc
Q 004248 624 KTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLL 703 (766)
Q Consensus 624 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y 703 (766)
.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|++|||.+...........++..|
T Consensus 79 ~~-------~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y 148 (237)
T cd05576 79 FL-------NIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMY 148 (237)
T ss_pred hc-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccc
Confidence 43 389999999999999999999987 99999999999999999999999999887664444444567789
Q ss_pred cCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 704 RLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 704 ~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+|||...... ++.++||||+||++|||++|+.|+.
T Consensus 149 ~aPE~~~~~~---------~~~~~DvwslG~il~el~~g~~~~~ 183 (237)
T cd05576 149 CAPEVGGISE---------ETEACDWWSLGAILFELLTGKTLVE 183 (237)
T ss_pred cCCcccCCCC---------CCchhhHHHHHHHHHHHHHCcchhh
Confidence 9999875433 4679999999999999999998864
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=266.78 Aligned_cols=195 Identities=19% Similarity=0.173 Sum_probs=162.1
Q ss_pred CCCccceeecCCcceEEEEEE----cCCcEEEEEEeecccc-----CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 535 DFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
+|+..+.||+|+||.||+|+. .+++.||||.++.... ..+.+.+|++++.++ +||||+++++.+.. ++.
T Consensus 1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~-~~~ 79 (288)
T cd05583 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT-DTK 79 (288)
T ss_pred CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec-CCE
Confidence 467789999999999999984 3578999999864321 145688999999999 59999999986644 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.++||||+++|+|.+++.... .+++.....++.|+++||+|||+. +++||||||+||+++.++.+||+||
T Consensus 80 ~~lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df 149 (288)
T cd05583 80 LHLILDYVNGGELFTHLYQRE-------HFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDF 149 (288)
T ss_pred EEEEEecCCCCcHHHHHhhcC-------CcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEEC
Confidence 899999999999999987543 388999999999999999999987 9999999999999999999999999
Q ss_pred hhhhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 685 SEVCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 685 G~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
|+++..... .....++..|++||.......+ .+.++||||||+++|||+||+.||.
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~Dv~slG~il~el~tg~~p~~ 209 (288)
T cd05583 150 GLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGG-------HDKAVDWWSLGVLTFELLTGASPFT 209 (288)
T ss_pred ccccccccccccccccccCCccccCHHHhcCCCCC-------CcchhhhHHHHHHHHHHHhCCCCcc
Confidence 998765221 1223467889999987554322 4679999999999999999999984
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=265.28 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=166.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~l 607 (766)
++|...+.||+|+||.||+|+. .+|+.||+|.+..... ..+.+.+|++++++++ ||||+++++++.. ++..++
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-~~~~~l 79 (280)
T cd05581 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQD-EENLYF 79 (280)
T ss_pred CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcC-CceEEE
Confidence 4688889999999999999995 4799999999865322 2457889999999998 9999999997655 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.+ .+++.++..++.|++.||+|||+. +++|+||||+||+++.++.++++|||++
T Consensus 80 v~e~~~~~~L~~~l~~~~-------~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~ 149 (280)
T cd05581 80 VLEYAPNGELLQYIRKYG-------SLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTA 149 (280)
T ss_pred EEcCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccc
Confidence 999999999999997643 499999999999999999999997 9999999999999999999999999998
Q ss_pred hhcCCCC-----------------------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 688 CAQGGDA-----------------------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 688 ~~~~~~~-----------------------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
....... ....++..|++||...... .+.++|||||||+++|+++|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~---------~~~~~Di~slG~~l~~l~~g~~ 220 (280)
T cd05581 150 KVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKP---------AGKSSDLWALGCIIYQMLTGKP 220 (280)
T ss_pred cccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCC---------CChhhhHHHHHHHHHHHHhCCC
Confidence 7653221 1224567899999765433 4789999999999999999999
Q ss_pred CCCCC
Q 004248 745 LNLSS 749 (766)
Q Consensus 745 p~~~~ 749 (766)
||...
T Consensus 221 p~~~~ 225 (280)
T cd05581 221 PFRGS 225 (280)
T ss_pred CCCCc
Confidence 99543
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-31 Score=259.83 Aligned_cols=207 Identities=17% Similarity=0.218 Sum_probs=169.2
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecC----CcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERE----NEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~~l 607 (766)
.+..+.||-|+||.||.... ++|+.||.|++..-. ...+++.+|++++.-.+|.|+...++.-.... .++|+
T Consensus 55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV 134 (449)
T KOG0664|consen 55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV 134 (449)
T ss_pred CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence 34568999999999999885 579999999985322 22568999999999999999999988643211 26899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|.|.|.. ||...|-.- +.++-...+-+..||.+||.|||+. +|.||||||.|.|++++...||||||+|
T Consensus 135 ~TELmQS-DLHKIIVSP-------Q~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLA 203 (449)
T KOG0664|consen 135 LTELMQS-DLHKIIVSP-------QALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLA 203 (449)
T ss_pred HHHHHHh-hhhheeccC-------CCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccc
Confidence 9999985 898888533 3578888888999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEE
Q 004248 688 CAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKL 762 (766)
Q Consensus 688 ~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~ 762 (766)
+..+.+ .+..+.|.+|+|||.+.+... |+.++||||.|||..|++-.|.-|. .....+|++.|.++
T Consensus 204 Rvee~d~~~hMTqEVVTQYYRAPEiLMGaRh--------Ys~AvDiWSVGCIFaELLgRrILFQ-Aq~PiqQL~lItdL 273 (449)
T KOG0664|consen 204 RTWDQRDRLNMTHEVVTQYYRAPELLMGARR--------YTGAVDIWSVGCIFAELLQRKILFQ-AAGPIEQLQMIIDL 273 (449)
T ss_pred cccchhhhhhhHHHHHHHHhccHHHhhcchh--------hcCccceehhhHHHHHHHhhhhhhh-ccChHHHHHHHHHH
Confidence 986432 455678999999999987665 7899999999999999998887764 33445666655443
|
|
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=256.67 Aligned_cols=200 Identities=21% Similarity=0.264 Sum_probs=169.5
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|+..+.||+|+||.||++.. .++..||+|++..... ..+++.+|++++++++|||++++++.+.. .+..++|+|
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~-~~~~~lv~e 79 (258)
T cd08215 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEE-KGKLCIVME 79 (258)
T ss_pred CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEec-CCEEEEEEE
Confidence 477889999999999999995 4689999999976433 25678999999999999999999997765 468999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++++|.+++.+... ....+++.++..++.+++.||+|||+. +++|+||||+||++++++.+||+|||.+...
T Consensus 80 ~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~ 153 (258)
T cd08215 80 YADGGDLSQKIKKQKK---EGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVL 153 (258)
T ss_pred ecCCCcHHHHHHHhhc---cCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeec
Confidence 9999999999976431 113589999999999999999999997 9999999999999999999999999999765
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... .....++..|+|||...... ++.++||||+|++++||++|+.||...+
T Consensus 154 ~~~~~~~~~~~~~~~y~~pe~~~~~~---------~~~~~Dv~slG~~~~~l~~g~~p~~~~~ 207 (258)
T cd08215 154 SSTVDLAKTVVGTPYYLSPELCQNKP---------YNYKSDIWSLGCVLYELCTLKHPFEGEN 207 (258)
T ss_pred ccCcceecceeeeecccChhHhccCC---------CCccccHHHHHHHHHHHHcCCCCCCCCc
Confidence 332 22346788899999765443 4679999999999999999999996543
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=264.44 Aligned_cols=195 Identities=19% Similarity=0.286 Sum_probs=164.4
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
|+..+.||+|++|.||+|+. .+++.+|+|++...... .+.+.+|++++++++||||+++++++.. ++..++|+||
T Consensus 1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e~ 79 (283)
T cd05118 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRH-KGDLYLVFEF 79 (283)
T ss_pred CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhcc-CCCEEEEEec
Confidence 56678999999999999985 57899999998654332 4678899999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++ +|.+++..+. ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.+....
T Consensus 80 ~~~-~l~~~l~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~ 149 (283)
T cd05118 80 MDT-DLYKLIKDRQ------RGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFG 149 (283)
T ss_pred cCC-CHHHHHHhhc------ccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecC
Confidence 985 9988887543 2489999999999999999999997 99999999999999999999999999987664
Q ss_pred CCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ....++..|++||....... .+.++||||+||++|||+||+.||...
T Consensus 150 ~~~~~~~~~~~~~~~~~PE~~~~~~~--------~~~~~Di~slG~~l~~l~tg~~~~~~~ 202 (283)
T cd05118 150 SPVRPYTHYVVTRWYRAPELLLGDKG--------YSTPVDIWSVGCIFAELLSRRPLFPGK 202 (283)
T ss_pred CCcccccCccCcccccCcHHHhcCCC--------CCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 322 23456788999998754311 578999999999999999999998543
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=270.83 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=160.0
Q ss_pred CCCccceeecCCcceEEEEEE-cC--CcEEEEEEeecccc---CHHHHHHHHHHHhhc-CCCCcccceeEEEec---CCc
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EG--GIPVVIKRIDLQSV---KTEAYLLELDFFSKV-SHARLVPLLGHCMER---ENE 604 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~--g~~vavK~l~~~~~---~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~---~~~ 604 (766)
+|+..+.||+|+||.||++.. .+ +..||||++..... ..+.+.+|+++++++ +||||+++++++... ...
T Consensus 1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~ 80 (332)
T cd07857 1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE 80 (332)
T ss_pred CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence 467788999999999999994 34 78999999864321 245788999999999 599999999865421 235
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+++||+. ++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+||
T Consensus 81 ~~~~~e~~~-~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Df 149 (332)
T cd07857 81 LYLYEELME-ADLHQIIRSGQ-------PLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDF 149 (332)
T ss_pred EEEEEeccc-CCHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcC
Confidence 789999997 69999886443 389999999999999999999997 9999999999999999999999999
Q ss_pred hhhhhcCC-------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 685 SEVCAQGG-------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~-------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+++.... ......++..|+|||....... ++.++||||+||++|||++|+.||...
T Consensus 150 g~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~--------~~~~~Di~slGv~l~~l~~g~~pf~~~ 213 (332)
T cd07857 150 GLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQS--------YTKAIDVWSVGCILAELLGRKPVFKGK 213 (332)
T ss_pred CCceecccccccccccccCcccCccccCcHHHhCCCC--------CCcHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 99975421 1223467889999997643221 478999999999999999999998543
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=277.34 Aligned_cols=213 Identities=18% Similarity=0.221 Sum_probs=156.1
Q ss_pred HhCCCCccceeecCCcceEEEEEE-----------------cCCcEEEEEEeeccccC-HHH--------------HHHH
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-----------------EGGIPVVIKRIDLQSVK-TEA--------------YLLE 579 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-----------------~~g~~vavK~l~~~~~~-~~~--------------~~~E 579 (766)
..++|+..++||+|+||+||+|.. ..++.||||++...... .++ +..|
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE 222 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE 222 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence 367899999999999999999963 23568999998653321 223 3457
Q ss_pred HHHHhhcCCCCc-----ccceeEEEec-------CCcEEEEEeeCCCCChhhhhhccCCCC-----------------Cc
Q 004248 580 LDFFSKVSHARL-----VPLLGHCMER-------ENEKFLVYKYMPNGDLSSSLYRKTNTE-----------------DD 630 (766)
Q Consensus 580 ~~~l~~l~H~ni-----v~l~~~~~~~-------~~~~~lV~Ey~~~GsL~~~l~~~~~~~-----------------~~ 630 (766)
+.++.+++|.++ ++++++|... +++.++||||+++|+|.++++...... ..
T Consensus 223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~ 302 (507)
T PLN03224 223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP 302 (507)
T ss_pred HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence 777888877654 6777776431 246899999999999999997532100 01
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC--C--ccceeeecccCC
Q 004248 631 LQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--A--HQSRITRLLRLP 706 (766)
Q Consensus 631 ~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--~--~~~~~t~~y~aP 706 (766)
...++|..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..... . ....+++.|+||
T Consensus 303 ~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aP 379 (507)
T PLN03224 303 QDKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPP 379 (507)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeCh
Confidence 12467889999999999999999997 8999999999999999999999999999754221 1 122347889999
Q ss_pred CCCCCCceeeee-----------e--eeecccccceecchHHHHHHhcCCC-CCC
Q 004248 707 QSSEQGSSGMVI-----------Y--LFIIFTIFHIYFHGNPLFSAIFNNH-LNL 747 (766)
Q Consensus 707 e~~~~~~~g~~~-----------~--~~~~~~~~Dv~s~Gvvl~elltG~~-p~~ 747 (766)
|.+......... + .+....+.||||+||++|||++|.. ||.
T Consensus 380 E~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~ 434 (507)
T PLN03224 380 EELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA 434 (507)
T ss_pred hhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence 976532211100 0 0112346899999999999999975 663
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=261.59 Aligned_cols=194 Identities=22% Similarity=0.283 Sum_probs=163.3
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
|+..+.||+|+||.||+|+. .+++.||+|.+.... ...+.+.+|++++++++||||+++++++.. .+..++||||
T Consensus 1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~~v~e~ 79 (282)
T cd07829 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHT-ERKLYLVFEY 79 (282)
T ss_pred CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhc-CCceEEEecC
Confidence 45678899999999999995 469999999997643 124678899999999999999999997765 4689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
++ ++|.+++.+.. ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||.++...
T Consensus 80 ~~-~~l~~~i~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~ 149 (282)
T cd07829 80 CD-MDLKKYLDKRP------GPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFG 149 (282)
T ss_pred cC-cCHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccC
Confidence 98 59999997642 2489999999999999999999998 99999999999999999999999999987653
Q ss_pred CC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 692 GD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 692 ~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. ......+..|+|||....... ++.++|||||||++|||++|+.||..
T Consensus 150 ~~~~~~~~~~~~~~~~aPE~~~~~~~--------~~~~~Dv~slG~~l~~l~~~~~~~~~ 201 (282)
T cd07829 150 IPLRTYTHEVVTLWYRAPEILLGSKH--------YSTAVDIWSVGCIFAEMITGKPLFPG 201 (282)
T ss_pred CCccccCccccCcCcCChHHhcCCcC--------CCccccHHHHHHHHHHHHhCCCCCCC
Confidence 32 223345678999998754321 57899999999999999999998854
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=274.54 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=163.1
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++.|.....+|.|+|+.|-++. ..+++..+||++.... .+-.+|+.++... +||||+++++.|.+ ..+.|+|||
T Consensus 321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~---~~~~~e~~~~~~~~~h~niv~~~~v~~~-~~~~~~v~e 396 (612)
T KOG0603|consen 321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA---DDNQDEIPISLLVRDHPNIVKSHDVYED-GKEIYLVME 396 (612)
T ss_pred chhhccccccCCCCccceeeeeccccccchhheeccccc---cccccccchhhhhcCCCcceeecceecC-Cceeeeeeh
Confidence 4557777789999999999998 6778999999997652 2234577666666 79999999998865 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee-CCCCcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL-DDKFEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl-~~~~~~kl~DFG~a~~ 689 (766)
++.+|.+.+.+...+. .. ..+..++.+++.|+.|||++ +|||||+||+|||+ ++.++++|+|||.++.
T Consensus 397 ~l~g~ell~ri~~~~~-------~~-~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~ 465 (612)
T KOG0603|consen 397 LLDGGELLRRIRSKPE-------FC-SEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSE 465 (612)
T ss_pred hccccHHHHHHHhcch-------hH-HHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhh
Confidence 9999998888865442 23 66778999999999999998 99999999999999 5899999999999998
Q ss_pred cCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 690 QGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 690 ~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
......+.+.|..|.|||+.... + +|++||||||||+||||++|+.||.....+
T Consensus 466 ~~~~~~tp~~t~~y~APEvl~~~--~-------yt~acD~WSLGvlLy~ML~G~tp~~~~P~~ 519 (612)
T KOG0603|consen 466 LERSCDTPALTLQYVAPEVLAIQ--E-------YTEACDWWSLGVLLYEMLTGRTLFAAHPAG 519 (612)
T ss_pred CchhhcccchhhcccChhhhccC--C-------CCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence 76665555778999999998733 2 599999999999999999999999644433
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-30 Score=255.81 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=170.0
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecC-----Cc
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERE-----NE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~~ 604 (766)
.+|.....+|.|.- .|..|. .-.++.||+|++.... ...++..+|..+|..++|+|||+++.++...+ .+
T Consensus 17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e 95 (369)
T KOG0665|consen 17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE 95 (369)
T ss_pred eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence 45677788898887 666665 3468899999985432 23567889999999999999999999775432 36
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+|||||. ++|...++- .++..+...|..|++.|+.|||+. +|+||||||+||++..+..+||.||
T Consensus 96 ~y~v~e~m~-~nl~~vi~~---------elDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~df 162 (369)
T KOG0665|consen 96 VYLVMELMD-ANLCQVILM---------ELDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDF 162 (369)
T ss_pred HHHHHHhhh-hHHHHHHHH---------hcchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccc
Confidence 899999997 599999872 278889999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccccccceeeEEE
Q 004248 685 SEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKL 762 (766)
Q Consensus 685 G~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~~~~~ 762 (766)
|+|+..+. ..+.++.|++|+|||++.+.. +.+.+||||.||++.||++|+.-| .+.+.+++|.|+
T Consensus 163 g~ar~e~~~~~mtpyVvtRyyrapevil~~~---------~ke~vdiwSvGci~gEli~~~Vlf----~g~d~idQ~~ki 229 (369)
T KOG0665|consen 163 GLARTEDTDFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGELILGTVLF----PGKDHIDQWNKI 229 (369)
T ss_pred hhhcccCcccccCchhheeeccCchheeccC---------CcccchhhhhhhHHHHHhhceEEe----cCchHHHHHHHH
Confidence 99987754 367789999999999987654 368999999999999999999888 566677777665
Q ss_pred Ee
Q 004248 763 CV 764 (766)
Q Consensus 763 ~~ 764 (766)
..
T Consensus 230 ~~ 231 (369)
T KOG0665|consen 230 IE 231 (369)
T ss_pred HH
Confidence 44
|
|
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=254.32 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=161.5
Q ss_pred eecCCcceEEEEEEc-CCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 542 IKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 542 ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
||+|+||.||++... +++.||+|.++..... .+.+.+|++++++++||||+++++.+.. ++..++||||+++++
T Consensus 1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~~~~~~ 79 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT-EEKLYLVLEYAPGGE 79 (250)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec-CCeeEEEEecCCCCc
Confidence 699999999999954 5899999998765432 4578999999999999999999987654 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC---
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD--- 693 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~--- 693 (766)
|.+++.... .+++.....++.|++.|+.|||+. +++|+||||+||+++.++.+||+|||.+......
T Consensus 80 L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~ 149 (250)
T cd05123 80 LFSHLSKEG-------RFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR 149 (250)
T ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCc
Confidence 999997543 389999999999999999999997 9999999999999999999999999998765332
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.....++..|++||...... .+.++|+||||+++||+++|+.||...+
T Consensus 150 ~~~~~~~~~~~~Pe~~~~~~---------~~~~~D~~slG~~~~~l~~g~~p~~~~~ 197 (250)
T cd05123 150 TNTFCGTPEYLAPEVLLGKG---------YGKAVDWWSLGVLLYEMLTGKPPFYAED 197 (250)
T ss_pred ccCCcCCccccChHHhCCCC---------CCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence 33445678899999875433 4678999999999999999999995443
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-28 Score=256.37 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=157.5
Q ss_pred CCCccceeecCCcceEEEEEEc-CCcEEEEEEeec---ccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDL---QSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~---~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
+|...+.||+|+||.||+++.. .+..+++|.++. ... ...++.+|+.++++++||||+++++++.+ .+..++
T Consensus 1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~l 79 (260)
T cd08222 1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLE-RDAFCI 79 (260)
T ss_pred CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhc-CCceEE
Confidence 4777899999999999999853 344555555532 111 23467789999999999999999997765 457899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++++|.+++++... ....++|.+++.++.|++.||+|||+. +++||||||+||++++ +.+||+|||++
T Consensus 80 v~e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~ 152 (260)
T cd08222 80 ITEYCEGRDLDCKLEELKH---TGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVS 152 (260)
T ss_pred EEEeCCCCCHHHHHHHHhh---cccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCce
Confidence 9999999999999875321 123589999999999999999999987 9999999999999975 56999999998
Q ss_pred hhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+..... .....++..|+|||...... ++.++||||||+++|||++|+.||..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~pe~~~~~~---------~~~~~Dv~slG~~~~~l~~~~~~~~~ 207 (260)
T cd08222 153 RLLMGSCDLATTFTGTPYYMSPEALKHQG---------YDSKSDIWSLGCILYEMCCLAHAFEG 207 (260)
T ss_pred eecCCCcccccCCCCCcCccCHHHHccCC---------CCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 765322 22344677899999765433 46789999999999999999999853
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=279.98 Aligned_cols=201 Identities=19% Similarity=0.309 Sum_probs=163.5
Q ss_pred CCCCccceeecCCcceEEEEEEc----C----CcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----G----GIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~----g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++....+.+|+|.||.|++|... . ...||||.++..... .+.+..|+++|+.+ +|||||.++|+|.. +
T Consensus 296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~-~ 374 (609)
T KOG0200|consen 296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQ-D 374 (609)
T ss_pred hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeecc-C
Confidence 33445569999999999999832 1 458999999764433 67899999999999 69999999999987 6
Q ss_pred CcEEEEEeeCCCCChhhhhhccC---CCCCc----C--CCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKT---NTEDD----L--QSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~---~~~~~----~--~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..++|+||++.|+|.++++.++ ..... . ..++..+.+.++.|||.|++||++. ++||||+.++|||+
T Consensus 375 ~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi 451 (609)
T KOG0200|consen 375 GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLI 451 (609)
T ss_pred CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEe
Confidence 78999999999999999998766 10011 1 2489999999999999999999998 89999999999999
Q ss_pred CCCCcEEeccchhhhhcCCCCc----cceeee--cccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGDAH----QSRITR--LLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLN 746 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~~~----~~~~t~--~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~ 746 (766)
.++..+||+|||+|+....... ...++. .+||||.+.... ++.|+|||||||+|||+.| |..|+
T Consensus 452 ~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~---------ft~kSDVWSfGI~L~EifsLG~~PY 522 (609)
T KOG0200|consen 452 TKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRV---------FTSKSDVWSFGILLWEIFTLGGTPY 522 (609)
T ss_pred cCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCc---------ccccchhhHHHHHHHHHhhCCCCCC
Confidence 9999999999999996532211 111112 389999886533 6899999999999999999 78888
Q ss_pred C
Q 004248 747 L 747 (766)
Q Consensus 747 ~ 747 (766)
.
T Consensus 523 p 523 (609)
T KOG0200|consen 523 P 523 (609)
T ss_pred C
Confidence 4
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=255.07 Aligned_cols=199 Identities=15% Similarity=0.147 Sum_probs=166.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCC--CC----cccceeEEEecCCcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSH--AR----LVPLLGHCMERENEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H--~n----iv~l~~~~~~~~~~~ 605 (766)
+++|.....+|+|.||.|-++.. ..+..||||+++.-..-++.-+-|+++++++.+ |+ +|.+.+++ +-.++.
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wF-dyrghi 166 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWF-DYRGHI 166 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhh-hccCce
Confidence 67899999999999999999984 458999999997554446778889999999942 33 67777744 446789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---------
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK--------- 676 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~--------- 676 (766)
++|+|.+. -+++++|..+.. .+++..++..++.|++++++|||+. +++|-||||+|||+-+.
T Consensus 167 CivfellG-~S~~dFlk~N~y-----~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k 237 (415)
T KOG0671|consen 167 CIVFELLG-LSTFDFLKENNY-----IPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPK 237 (415)
T ss_pred EEEEeccC-hhHHHHhccCCc-----cccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccC
Confidence 99999993 499999976543 5689999999999999999999997 99999999999998422
Q ss_pred -----------CcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCC
Q 004248 677 -----------FEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745 (766)
Q Consensus 677 -----------~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p 745 (766)
..+||.|||.|+......++.+.|+.|+|||++.+-.+ +.++||||+||||+|+.||..-
T Consensus 238 ~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGw---------S~pCDvWSiGCIL~ElytG~~L 308 (415)
T KOG0671|consen 238 KKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGW---------SQPCDVWSIGCILVELYTGETL 308 (415)
T ss_pred CccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCc---------CCccCceeeeeEEEEeecccee
Confidence 34899999999887777777889999999999987665 5699999999999999999988
Q ss_pred CCCCc
Q 004248 746 NLSSR 750 (766)
Q Consensus 746 ~~~~~ 750 (766)
|...+
T Consensus 309 FqtHe 313 (415)
T KOG0671|consen 309 FQTHE 313 (415)
T ss_pred cccCC
Confidence 85433
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=258.14 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=167.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCH---------HHHHHHHHHHhhcC---CCCcccceeEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKT---------EAYLLELDFFSKVS---HARLVPLLGHCME 600 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~---------~~~~~E~~~l~~l~---H~niv~l~~~~~~ 600 (766)
.+|...+.+|+|+||.|..|.. ++...|+||.+.+...-. -..-.|+.||..++ |+||++++++|.+
T Consensus 561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd 640 (772)
T KOG1152|consen 561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED 640 (772)
T ss_pred ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence 4688899999999999999984 457799999997654321 13456999999997 9999999996654
Q ss_pred cCCcEEEEEeeC-CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 601 RENEKFLVYKYM-PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 601 ~~~~~~lV~Ey~-~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
++.+||+||-- ++-||+++|..+.. +++.....|+.||+.|+++||+. +|||||||-+||.+|.+|-+
T Consensus 641 -dd~yyl~te~hg~gIDLFd~IE~kp~-------m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~ 709 (772)
T KOG1152|consen 641 -DDYYYLETEVHGEGIDLFDFIEFKPR-------MDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFV 709 (772)
T ss_pred -CCeeEEEecCCCCCcchhhhhhccCc-------cchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeE
Confidence 67899999954 56699999987654 99999999999999999999998 99999999999999999999
Q ss_pred Eeccchhhhhc-CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 680 RLGSLSEVCAQ-GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 680 kl~DFG~a~~~-~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
||.|||.|... .++....+||..|.|||.+.+..| .+..-|||++|++||.++...-||.
T Consensus 710 klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y--------~gk~qdiwalgillytivykenpyy 770 (772)
T KOG1152|consen 710 KLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKY--------LGKPQDIWALGILLYTIVYKENPYY 770 (772)
T ss_pred EEeeccchhhhcCCCcceeeeeccccchhhhCCCcc--------CCCcchhhhhhheeeEEEeccCCCc
Confidence 99999998765 556677899999999999987765 4567799999999999999998984
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-28 Score=275.99 Aligned_cols=210 Identities=16% Similarity=0.167 Sum_probs=145.0
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cC----CcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEE-----ec
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EG----GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM-----ER 601 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~----g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~-----~~ 601 (766)
..++|+..++||+|+||.||+|+. .+ +..||||++..... .+.+..| .+....+.+++.+...+. ..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~-~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA-VEIWMNE--RVRRACPNSCADFVYGFLEPVSSKK 206 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch-hHHHHHH--HHHhhchhhHHHHHHhhhccccccc
Confidence 467899999999999999999995 45 78999999754321 2222222 122223333333222111 23
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCC-------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCC
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTE-------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQA 668 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~-------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp 668 (766)
+.+.++||||+++|+|.+++....... .......+..+..++.|++.||+|||+. +||||||||
T Consensus 207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLKP 283 (566)
T PLN03225 207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVKP 283 (566)
T ss_pred CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCCH
Confidence 457999999999999999987542100 0001122344667999999999999997 999999999
Q ss_pred CCeeeCC-CCcEEeccchhhhhcCC----CCccceeeecccCCCCCCCCceeeee-------------eeeeccccccee
Q 004248 669 SSILLDD-KFEVRLGSLSEVCAQGG----DAHQSRITRLLRLPQSSEQGSSGMVI-------------YLFIIFTIFHIY 730 (766)
Q Consensus 669 ~NILl~~-~~~~kl~DFG~a~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~-------------~~~~~~~~~Dv~ 730 (766)
+|||+++ ++.+||+|||+|+.... ......+++.|+|||.+......... +...++.++|||
T Consensus 284 ~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVw 363 (566)
T PLN03225 284 QNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIY 363 (566)
T ss_pred HHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccH
Confidence 9999996 68999999999976522 22345678999999965432221110 112357789999
Q ss_pred cchHHHHHHhcCCCCCC
Q 004248 731 FHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 731 s~Gvvl~elltG~~p~~ 747 (766)
||||++|||+++..|++
T Consensus 364 SlGviL~el~~~~~~~~ 380 (566)
T PLN03225 364 SAGLIFLQMAFPNLRSD 380 (566)
T ss_pred HHHHHHHHHHhCcCCCc
Confidence 99999999999876653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-29 Score=265.34 Aligned_cols=293 Identities=24% Similarity=0.244 Sum_probs=227.5
Q ss_pred ccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccc
Q 004248 107 RFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL 186 (766)
Q Consensus 107 ~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 186 (766)
++...++..++.|++||||.|.++ .||..-+..-.++++|+|++|.|+..--..|.++.+|..|.|+.|+++...+..|
T Consensus 139 sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F 217 (873)
T KOG4194|consen 139 SVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF 217 (873)
T ss_pred cccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh
Confidence 344556777888888888888764 4443322224578888888888887777788888888888888888886666677
Q ss_pred cCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCE
Q 004248 187 GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVD 266 (766)
Q Consensus 187 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 266 (766)
.+|++|+.|+|..|++.-.---.|.+|++|+.|.|..|.+...-...|..|.++++|+|+.|+++..--.++.+|++|+.
T Consensus 218 k~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 218 KRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 77888888888888886333456788888888888888887655666788888888888888888777778888888889
Q ss_pred EEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCC
Q 004248 267 LDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNN 346 (766)
Q Consensus 267 L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 346 (766)
|+||+|.+...-++.+...++|+.|+|++|+++ .+++..|..++.|+.|+|++|.++..-...|..+++|+.|||++|.
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 999999888888888888888899999988887 5666677888888888999998888777888888889999999998
Q ss_pred CCCCCCcc--cccCCCCCcEEEccCCcCccC---CCcCCCCCCEEeccCCcCccccChhh
Q 004248 347 FTGPLPNS--RSNVNTSTVELNISQNMFYGG---LTPVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 347 l~g~~p~~--~~~~~~~l~~L~ls~N~l~g~---~~~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
+++.|.+. .+..+++|+.|++.+|++..- ....+..|+.|||.+|.+...-|+.+
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 88766542 345577888888888887531 22457888889999988876555544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-29 Score=263.57 Aligned_cols=286 Identities=26% Similarity=0.254 Sum_probs=192.0
Q ss_pred hhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCC
Q 004248 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQL 189 (766)
Q Consensus 110 ~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L 189 (766)
+..+.++++|+.+++..|.+. .||..... ..+|+.|+|.+|.|+.+-.+++..++.|+.||||.|.++..--.+|..-
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK 172 (873)
T ss_pred HHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence 456788999999999888774 67765433 6678888888888887777777888888888888888875444566666
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q 004248 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDL 269 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 269 (766)
.++++|+|++|+|+..--..|.++.+|..|.|+.|+++...+..|.+|++|+.|+|..|+|.-.--..|..|++|+.|.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 77888888888887766777778888888888888887555556666888888888888775332345666667777777
Q ss_pred cCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCC
Q 004248 270 SMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 270 s~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 349 (766)
..|.++..-...|..+.++++|+|+.|+++..-..++ -+++.|+.|+||+|.+..+-++.+.-.++|+.|||++|+++
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~- 330 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT- 330 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccc-cccchhhhhccchhhhheeecchhhhcccceeEeccccccc-
Confidence 7776666555666666666677776666653333333 35666666666666666666666666666666666666666
Q ss_pred CCCcccccCCCCCcEEEccCCcCcc---CCCcCCCCCCEEeccCCcCccccCh
Q 004248 350 PLPNSRSNVNTSTVELNISQNMFYG---GLTPVLGRFRLVDLSGNYFEGRVPE 399 (766)
Q Consensus 350 ~~p~~~~~~~~~l~~L~ls~N~l~g---~~~~~l~~l~~ldLs~N~l~g~~p~ 399 (766)
.++...+..+..|.+|+|++|.+.. .....+.+|+.|||++|.+++.|.+
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 3444444555556666666665432 2223445555566666655555543
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-29 Score=242.18 Aligned_cols=203 Identities=14% Similarity=0.241 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+.|.+.+.+|+|.||.+-.+. .++.+.+|+|.+.......++|.+|..---.| .|.|||.-|+..+++.+.+.+++||
T Consensus 24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~ 103 (378)
T KOG1345|consen 24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEF 103 (378)
T ss_pred hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeecc
Confidence 347778899999999999998 56788999999988777788999998765556 5899999999888877788899999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-C-CCcEEeccchhhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-D-KFEVRLGSLSEVCA 689 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~-~~~~kl~DFG~a~~ 689 (766)
+|.|||.+-+... .+.+...++++.|++.|++|||++ .+||||||.+||||- . ...+|+||||..+.
T Consensus 104 aP~gdL~snv~~~--------GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k 172 (378)
T KOG1345|consen 104 APRGDLRSNVEAA--------GIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRK 172 (378)
T ss_pred CccchhhhhcCcc--------cccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccc
Confidence 9999999887543 277888999999999999999998 999999999999994 3 35799999999877
Q ss_pred cCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 690 QGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 690 ~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
.+.......-+-.|.+||.......+... ..+.+|||.||+++|..+||+.|+.....
T Consensus 173 ~g~tV~~~~~~~~y~~pe~~~~~~ne~~~----~~ps~D~WqfGIi~f~cltG~~PWQka~~ 230 (378)
T KOG1345|consen 173 VGTTVKYLEYVNNYHAPELCDTVVNEKLV----VNPSTDIWQFGIIFFYCLTGKFPWQKASI 230 (378)
T ss_pred cCceehhhhhhcccCCcHHHhhccccceE----ecccccchheeeeeeeeecCCCcchhhhc
Confidence 65544433445678999866544433322 68899999999999999999999964433
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-27 Score=239.16 Aligned_cols=195 Identities=23% Similarity=0.299 Sum_probs=165.6
Q ss_pred CCccceeecCCcceEEEEEEcC-CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 536 FSDANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~-g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
|+..+.||+|++|.||+|...+ ++.+|+|.+..... ..+.+.+|++.+++++|+|++++++++.. ....++++||+
T Consensus 1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~-~~~~~~v~e~~ 79 (225)
T smart00221 1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFED-PEPLYLVMEYC 79 (225)
T ss_pred CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeec-CCceEEEEecc
Confidence 4567899999999999999654 89999999976543 35688999999999999999999998765 46799999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++++|.+++..... .+++.+...++.+++.++.|||.. +++|+|++|+||+++.++.++|+|||.+.....
T Consensus 80 ~~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~ 150 (225)
T smart00221 80 EGGDLFDYLRKKGG------KLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHR 150 (225)
T ss_pred CCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecC
Confidence 99999999975432 178999999999999999999997 999999999999999999999999999887643
Q ss_pred CC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 DA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. ....++..|++||... .... ++.++|||+||++++||++|+.||..
T Consensus 151 ~~~~~~~~~~~~~~~~~pe~~~-~~~~-------~~~~~Dv~~lG~~~~~l~~g~~pf~~ 202 (225)
T smart00221 151 DLAALLKTVKGTPFYLAPEVLL-GGKG-------YGEAVDIWSLGVILYELLWGPEPFSG 202 (225)
T ss_pred cccccccceeccCCcCCHhHhc-CCCC-------CCchhhHHHHHHHHHHHHHCCCCccc
Confidence 32 4456677899999864 1111 46799999999999999999999954
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=230.98 Aligned_cols=183 Identities=22% Similarity=0.248 Sum_probs=157.9
Q ss_pred CcceEEEEEEc-CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChhhhhh
Q 004248 546 HSGDLFRGILE-GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLY 622 (766)
Q Consensus 546 ~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~ 622 (766)
+||.||+|+.. +|+.||+|++...... .+.+.+|++.+++++|+||+++++++.. ....++|+||+++++|.+++.
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-~~~~~l~~e~~~~~~L~~~~~ 79 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFED-EDKLYLVMEYCDGGDLFDLLK 79 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheee-CCEEEEEEeCCCCCCHHHHHH
Confidence 58999999965 5899999999765433 5789999999999999999999998876 468999999999999999987
Q ss_pred ccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC--CCccceee
Q 004248 623 RKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG--DAHQSRIT 700 (766)
Q Consensus 623 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~--~~~~~~~t 700 (766)
.... +++.++..++.+++++++|||+. +|+|+||+|+||++++++.++++|||.+..... ......++
T Consensus 80 ~~~~-------~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 149 (244)
T smart00220 80 KRGR-------LSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGT 149 (244)
T ss_pred hccC-------CCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCC
Confidence 5432 88999999999999999999997 999999999999999999999999999987643 23445677
Q ss_pred ecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 701 RLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 701 ~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..|++||...... ++.++||||||++++||++|+.||..
T Consensus 150 ~~~~~pE~~~~~~---------~~~~~Di~slG~~l~~l~~~~~p~~~ 188 (244)
T smart00220 150 PEYMAPEVLLGKG---------YGKAVDVWSLGVILYELLTGKPPFPG 188 (244)
T ss_pred cCCCCHHHHccCC---------CCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 8899999775333 46799999999999999999999854
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-27 Score=253.26 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=170.6
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++|+....+|.|.||.||||+ ...++..|||.++..... ..-..+|+-+++..+|||||.++|-|.. .+..++.||
T Consensus 14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr-~dklwicME 92 (829)
T KOG0576|consen 14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLR-RDKLWICME 92 (829)
T ss_pred ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhh-hcCcEEEEE
Confidence 4678889999999999999999 577999999999876544 4556789999999999999999997765 467999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||.+|+|++..+-.+ ++++.++..++++..+|++|||+. +-+|||||=.|||+++.|.+|++|||.+..+
T Consensus 93 ycgggslQdiy~~Tg-------plselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqi 162 (829)
T KOG0576|consen 93 YCGGGSLQDIYHVTG-------PLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQI 162 (829)
T ss_pred ecCCCcccceeeecc-------cchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhh
Confidence 999999999876543 489999999999999999999998 8899999999999999999999999998766
Q ss_pred CC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 691 GG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 691 ~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+. ......||+++||||+-.-+..|. |..++|||+.|+...|+.--++|.
T Consensus 163 tati~KrksfiGtpywmapEvaaverkgg------ynqlcdiwa~gitAiel~eLqppl 215 (829)
T KOG0576|consen 163 TATIAKRKSFIGTPYWMAPEVAAVERKGG------YNQLCDIWALGITAIELGELQPPL 215 (829)
T ss_pred hhhhhhhhcccCCccccchhHHHHHhccc------ccccccccccccchhhhhhcCCcc
Confidence 43 345678999999999765554443 689999999999999998888775
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=229.67 Aligned_cols=213 Identities=20% Similarity=0.243 Sum_probs=170.4
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEEcC------CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEE
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHC 598 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~ 598 (766)
+++.....++....++-+|.||.||+|.+.+ .+.|-||.++....+ ...++.|.-.+..+.|||+.++.+++
T Consensus 277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ 356 (563)
T KOG1024|consen 277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS 356 (563)
T ss_pred HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence 3444445567777889999999999997543 456788888654433 56799999999999999999999999
Q ss_pred EecCCcEEEEEeeCCCCChhhhhhccCC-CCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 599 MERENEKFLVYKYMPNGDLSSSLYRKTN-TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 599 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~-~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
.+.....+++|.|+.-|+|..+|..-++ .....+.++-.+.+.+|.|++.|++|||++ +|||.||.++|++||+..
T Consensus 357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd~L 433 (563)
T KOG1024|consen 357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDDQL 433 (563)
T ss_pred eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhhcceehhhe
Confidence 8877788999999999999999984332 123346788889999999999999999998 999999999999999999
Q ss_pred cEEeccchhhhhcC-CCCc----cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCcc
Q 004248 678 EVRLGSLSEVCAQG-GDAH----QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSRF 751 (766)
Q Consensus 678 ~~kl~DFG~a~~~~-~~~~----~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~~ 751 (766)
++||+|=.++|..- .+.+ ......-||+||.+.... ++.++|||||||+||||+| |+.|+...++
T Consensus 434 qVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~---------yssasDvWsfGVllWELmtlg~~PyaeIDP 504 (563)
T KOG1024|consen 434 QVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSH---------YSSASDVWSFGVLLWELMTLGKLPYAEIDP 504 (563)
T ss_pred eEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhh---------hcchhhhHHHHHHHHHHHhcCCCCccccCH
Confidence 99999999998652 1111 011123478999887665 5789999999999999998 8999854433
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-26 Score=242.19 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=166.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC------CCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS------HARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~------H~niv~l~~~~~~~~~~~~ 606 (766)
+.|......|+|-|+.|.+|.. ..|..||||+|.......+.=++|+++|++|+ --|+++++-.|+. .++++
T Consensus 432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~h-knHLC 510 (752)
T KOG0670|consen 432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKH-KNHLC 510 (752)
T ss_pred ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhh-cceeE
Confidence 4577778889999999999994 45789999999877766677788999999995 3478999887665 57899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEeccch
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLGSLS 685 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFG 685 (766)
||+|-+. -+|.++|.+.+. ...|.......|+.|+..||..|... +|+|.||||.|||+++. ..+||||||
T Consensus 511 lVFE~Ls-lNLRevLKKyG~----nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDfG 582 (752)
T KOG0670|consen 511 LVFEPLS-LNLREVLKKYGR----NVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDFG 582 (752)
T ss_pred EEehhhh-chHHHHHHHhCc----ccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccCc
Confidence 9999886 499999987653 23488888999999999999999986 99999999999999975 569999999
Q ss_pred hhhhcC-CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 686 EVCAQG-GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 686 ~a~~~~-~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
.|.... ...+.+.++++|+|||++.+..|.| ..|+||.||.|||+.||+.-|
T Consensus 583 SA~~~~eneitPYLVSRFYRaPEIiLG~~yd~---------~iD~WSvgctLYElYtGkIlF 635 (752)
T KOG0670|consen 583 SASFASENEITPYLVSRFYRAPEIILGLPYDY---------PIDTWSVGCTLYELYTGKILF 635 (752)
T ss_pred cccccccccccHHHHHHhccCcceeecCcccC---------CccceeeceeeEEeeccceec
Confidence 998774 4567788899999999998877654 569999999999999999877
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=259.93 Aligned_cols=184 Identities=19% Similarity=0.218 Sum_probs=153.6
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...++||+|+||.||+|... +++.||||+++..... .+.+.+|+.+++.++||||+++++++.. .+..|+|
T Consensus 4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-~~~~~lV 82 (669)
T cd05610 4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQS-ANNVYLV 82 (669)
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEE-CCEEEEE
Confidence 57888999999999999999954 7899999999754322 3578899999999999999999986655 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++...+.|+.||+.||+|||.. +||||||||+|||++.++.+||+|||+++
T Consensus 83 mEy~~g~~L~~li~~~~-------~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~ 152 (669)
T cd05610 83 MEYLIGGDVKSLLHIYG-------YFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK 152 (669)
T ss_pred EeCCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence 99999999999997543 388999999999999999999997 99999999999999999999999999998
Q ss_pred hcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHH
Q 004248 689 AQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPL 736 (766)
Q Consensus 689 ~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl 736 (766)
.... ......+|+.|.+||.......+ ...+++|++|.-.
T Consensus 153 ~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~--------~~~s~~~s~g~~~ 195 (669)
T cd05610 153 VTLNRELNMMDILTTPSMAKPKNDYSRTPG--------QVLSLISSLGFNT 195 (669)
T ss_pred cccCCcccccccccCccccCccccccCCCC--------ceeeeeeecCcCC
Confidence 6532 22345678899999965443332 4567889998543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-25 Score=231.55 Aligned_cols=203 Identities=17% Similarity=0.180 Sum_probs=164.3
Q ss_pred HHHHhCCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEecCC
Q 004248 529 LLAATGDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMEREN 603 (766)
Q Consensus 529 l~~~~~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~ 603 (766)
+....+.|..+++||+|.|++||+|.+. ..+.||+|.+..... ..+..+|+++|..+. |.||+++.+ |+..++
T Consensus 31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~-p~ri~~El~~L~~~gG~~ni~~~~~-~~rnnd 108 (418)
T KOG1167|consen 31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS-PSRILNELEMLYRLGGSDNIIKLNG-CFRNND 108 (418)
T ss_pred hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC-chHHHHHHHHHHHhccchhhhcchh-hhccCC
Confidence 3445567889999999999999999842 468999999976554 346899999999995 899999998 555577
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEec
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLG 682 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~ 682 (766)
.+.+|+||++.-+..+++.. ++..++..+...+..||+|+|+. +||||||||+|+|.+.. +.-.|.
T Consensus 109 ~v~ivlp~~~H~~f~~l~~~----------l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~Lv 175 (418)
T KOG1167|consen 109 QVAIVLPYFEHDRFRDLYRS----------LSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLV 175 (418)
T ss_pred eeEEEecccCccCHHHHHhc----------CCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEE
Confidence 89999999999888888752 77888999999999999999998 99999999999999854 668899
Q ss_pred cchhhhhcC---------C-------C-------------------------------CccceeeecccCCCCCCCCcee
Q 004248 683 SLSEVCAQG---------G-------D-------------------------------AHQSRITRLLRLPQSSEQGSSG 715 (766)
Q Consensus 683 DFG~a~~~~---------~-------~-------------------------------~~~~~~t~~y~aPe~~~~~~~g 715 (766)
|||+|...+ . . .....||+.|+|||+......
T Consensus 176 DFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~- 254 (418)
T KOG1167|consen 176 DFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPR- 254 (418)
T ss_pred echhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccC-
Confidence 999997210 0 0 001357888888887654332
Q ss_pred eeeeeeecccccceecchHHHHHHhcCCCCCCCCccccc
Q 004248 716 MVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVK 754 (766)
Q Consensus 716 ~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~ 754 (766)
-++++||||-|||++-+++++.||+......+
T Consensus 255 -------QttaiDiws~GVI~Lslls~~~PFf~a~dd~~ 286 (418)
T KOG1167|consen 255 -------QTTAIDIWSAGVILLSLLSRRYPFFKAKDDAD 286 (418)
T ss_pred -------cCCccceeeccceeehhhccccccccCccccc
Confidence 47899999999999999999999975544433
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=228.43 Aligned_cols=134 Identities=22% Similarity=0.338 Sum_probs=115.2
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-----C---CCcccceeEEEec---
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-----H---ARLVPLLGHCMER--- 601 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-----H---~niv~l~~~~~~~--- 601 (766)
++|...++||=|.|++||.|. ..+.+.||+|+++..+.-.+....||++|++++ | .+||+|+++|...
T Consensus 78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpN 157 (590)
T KOG1290|consen 78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPN 157 (590)
T ss_pred ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCC
Confidence 678899999999999999998 577899999999866655778899999999983 3 3699999987643
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~ 675 (766)
+.++++|+||. |-+|..+|..... +.++....++|+.||+.||.|||++| +|||-||||+|||+..
T Consensus 158 G~HVCMVfEvL-GdnLLklI~~s~Y-----rGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~ 223 (590)
T KOG1290|consen 158 GQHVCMVFEVL-GDNLLKLIKYSNY-----RGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCS 223 (590)
T ss_pred CcEEEEEehhh-hhHHHHHHHHhCC-----CCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeec
Confidence 34799999999 4589999976543 34899999999999999999999997 9999999999999853
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-24 Score=227.04 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=124.4
Q ss_pred HhCCCCccceeecCCcceEEEEEEc--CCcEEEEEEeeccc------cCHHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE--GGIPVVIKRIDLQS------VKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~--~g~~vavK~l~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
..++|...+.||+|+||+||+|... +++.||||++.... ...+.|.+|+++|++++|+|+|+.+.. .+
T Consensus 16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~----~~ 91 (365)
T PRK09188 16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA----TG 91 (365)
T ss_pred ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE----cC
Confidence 3467999999999999999999853 57888999875331 124569999999999999999964321 13
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCC-CCCCeeeCCCCcEEec
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV-QASSILLDDKFEVRLG 682 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDl-Kp~NILl~~~~~~kl~ 682 (766)
..|+||||++|++|.. +.. .. ...++.++++||+|||+. +|+|||| ||+|||++.++++||+
T Consensus 92 ~~~LVmE~~~G~~L~~-~~~----------~~---~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLi 154 (365)
T PRK09188 92 KDGLVRGWTEGVPLHL-ARP----------HG---DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVI 154 (365)
T ss_pred CcEEEEEccCCCCHHH-hCc----------cc---hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEE
Confidence 5799999999999963 211 01 135788999999999997 9999999 9999999999999999
Q ss_pred cchhhhhcCCC-----------CccceeeecccCCCCCCC
Q 004248 683 SLSEVCAQGGD-----------AHQSRITRLLRLPQSSEQ 711 (766)
Q Consensus 683 DFG~a~~~~~~-----------~~~~~~t~~y~aPe~~~~ 711 (766)
|||+|+..... .+...+++.|.|||.+..
T Consensus 155 DFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~ 194 (365)
T PRK09188 155 DFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP 194 (365)
T ss_pred ECccceecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence 99999865322 134456777999996644
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-25 Score=243.78 Aligned_cols=192 Identities=17% Similarity=0.259 Sum_probs=149.1
Q ss_pred CCccceeecCCcce-EEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 536 FSDANLIKNGHSGD-LFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 536 ~~~~~~ig~G~~g~-Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
|...+++|.|+.|+ ||+|..+ |+.||||++-... ..-..||+..++.- +|||||+.++. ..++...|+..|.|.
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e~--~~~A~rEi~lL~eSD~H~NviRyyc~-E~d~qF~YIalELC~ 586 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEEF--FDFAQREIQLLQESDEHPNVIRYYCS-EQDRQFLYIALELCA 586 (903)
T ss_pred eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhHh--HHHHHHHHHHHHhccCCCceEEEEee-ccCCceEEEEehHhh
Confidence 45567899999885 7999876 5699999985332 23457899999988 59999998752 223457899999998
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---C--CcEEeccchhhh
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---K--FEVRLGSLSEVC 688 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~--~~~kl~DFG~a~ 688 (766)
. +|.+++..... +.. ...-.....+..|++.||++||+- +||||||||.||||+. + ..|+|+|||+++
T Consensus 587 ~-sL~dlie~~~~-d~~--~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsK 659 (903)
T KOG1027|consen 587 C-SLQDLIESSGL-DVE--MQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSK 659 (903)
T ss_pred h-hHHHHHhcccc-chh--hcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEeccccccc
Confidence 5 99999976411 111 111134567888999999999996 9999999999999986 3 469999999998
Q ss_pred hcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcC-CCCCC
Q 004248 689 AQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN-NHLNL 747 (766)
Q Consensus 689 ~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG-~~p~~ 747 (766)
..+.. .....||-.|+|||.+..... +.++||+|+|||+|..+|| ++||.
T Consensus 660 kl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~---------~~avDiFslGCvfyYvltgG~HpFG 716 (903)
T KOG1027|consen 660 KLAGGKSSFSRLSGGSGTSGWQAPEQLREDRK---------TQAVDIFSLGCVFYYVLTGGSHPFG 716 (903)
T ss_pred ccCCCcchhhcccCCCCcccccCHHHHhcccc---------CcccchhhcCceEEEEecCCccCCC
Confidence 87432 234568999999998865543 5688999999999999996 99994
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-23 Score=206.96 Aligned_cols=180 Identities=26% Similarity=0.337 Sum_probs=152.9
Q ss_pred eecCCcceEEEEEEc-CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChh
Q 004248 542 IKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618 (766)
Q Consensus 542 ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~ 618 (766)
||+|++|.||++... +++.+++|+....... .+.+.+|++.+++++|++|+++++++.. ....++++||+++++|.
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~e~~~~~~l~ 79 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED-ENHLYLVMEYCEGGSLK 79 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeec-CCeEEEEEecCCCCcHH
Confidence 689999999999965 4899999999765543 4679999999999999999999997765 46799999999999999
Q ss_pred hhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhhhcCCC---C
Q 004248 619 SSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVCAQGGD---A 694 (766)
Q Consensus 619 ~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~~~~~~---~ 694 (766)
+++.... ..+++..+..++.+++++++|||+. +++|+||+|.||+++. ++.++|+|||.+...... .
T Consensus 80 ~~~~~~~------~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~ 150 (215)
T cd00180 80 DLLKENE------GKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLL 150 (215)
T ss_pred HHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchh
Confidence 9997542 2489999999999999999999998 9999999999999999 899999999998766433 3
Q ss_pred ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHH
Q 004248 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739 (766)
Q Consensus 695 ~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~el 739 (766)
....+...|.+||....... .+.+.|+|++|++++||
T Consensus 151 ~~~~~~~~~~~pe~~~~~~~--------~~~~~D~~~lg~~~~~l 187 (215)
T cd00180 151 KTIVGTPAYMAPEVLLGKGY--------YSEKSDIWSLGVILYEL 187 (215)
T ss_pred hcccCCCCccChhHhcccCC--------CCchhhhHHHHHHHHHH
Confidence 33456778999997754411 46889999999999998
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-26 Score=241.47 Aligned_cols=280 Identities=28% Similarity=0.343 Sum_probs=187.7
Q ss_pred hhccCCCCCEEecCCCCCC-CCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCc-cccCC
Q 004248 112 ALVNLTHLASFNASRFLLP-GSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS-SLGQL 189 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~-g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~L 189 (766)
.+..|+.||++.+..|++- ..||+.++. |..|++||||+|++. ..|..+.+..++.+|+||+|+|. .||. .+-+|
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 3455666666666666552 346766665 777777777777776 45666777777777777777776 3443 34567
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCC-CCCccccCCCCCCCEEE
Q 004248 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA-SSIPAQLGDLDSLVDLD 268 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ 268 (766)
+.|-+||||+|++. .+|+.+..|.+|++|+|++|.+.-.--..+..+++|+.|.+++.+=+ ..+|.++..+.+|..+|
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 77777777777775 46666667777777777777654322233444556666666654322 35788888888888888
Q ss_pred ccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCC
Q 004248 269 LSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 269 Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
+|.|++. .+|+.+-++++|+.|+||+|.|+. +.... ....+|+.|+||.|+++ .+|+.+..+++|+.|.+.+|+++
T Consensus 229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~-~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTE-GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccccCCC-cchHHHhhhhhhheeccCcCceee-eeccH-HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 8888887 778888888888888888888863 22222 34567888888888887 46778888888888888888876
Q ss_pred C-CCCcccccCCCCCcEEEccCCcCccCCCcC---CCCCCEEeccCCcCccccChhhh
Q 004248 349 G-PLPNSRSNVNTSTVELNISQNMFYGGLTPV---LGRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 349 g-~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~---l~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
- -||. ..+.+..|..+..++|.+. -+|.. ...|+.|.|++|++- ++|+.++
T Consensus 305 FeGiPS-GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 305 FEGIPS-GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred ccCCcc-chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence 2 3553 3455667777777777664 33433 345677777777775 4666654
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-25 Score=238.83 Aligned_cols=299 Identities=27% Similarity=0.386 Sum_probs=237.8
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
-|.++|++++.. .|.- -|.....+++++.|.|.+..+ ..+|+.++. |.+|++|.+++|++. .+-..++.|+
T Consensus 8 FVrGvDfsgNDF--sg~~----FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 8 FVRGVDFSGNDF--SGDR----FPHDVEQMTQMTWLKLNRTKL-EQVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred eeecccccCCcC--CCCc----CchhHHHhhheeEEEechhhh-hhChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccch
Confidence 477788887542 1221 234677888999999888776 479999987 999999999999987 3456788899
Q ss_pred CCcEEEeecCcCCC-CCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCC-CCCCCCccEEE
Q 004248 167 NLTSLYLSDNGLTG-TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLN 244 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ 244 (766)
.|+.+++.+|++.. -+|..+..|..|..||||+|++. ..|..+..-+++-.|+||+|++. .||.. +.+|+.|-+||
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 99999999999853 37888999999999999999997 68999999999999999999998 55654 57899999999
Q ss_pred ccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc-cccCCCccCCCCcccEEEccCCCC
Q 004248 245 VSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS-GNLSVNLFPTVSQLQIIVLRQNGF 323 (766)
Q Consensus 245 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~-g~~~~~~~~~l~~L~~L~L~~N~l 323 (766)
||+|++. .+|..+..|..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|.++ ..+.+|..+|||.|++
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNL 234 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCC
Confidence 9999996 57778889999999999999876433344556788888999886544 4567665 7889999999999999
Q ss_pred CCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCcc-ccCh
Q 004248 324 TGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEG-RVPE 399 (766)
Q Consensus 324 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g-~~p~ 399 (766)
. ..|+.+.++++|+.|+||+|+++. +.. ......++..||+|+|+++. +|. .|++|+.|.+.+|+++- -||.
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCcc
Confidence 6 578899999999999999999983 321 12334578899999999974 443 46788889999998763 4787
Q ss_pred hhh
Q 004248 400 YVH 402 (766)
Q Consensus 400 ~~~ 402 (766)
.++
T Consensus 311 GIG 313 (1255)
T KOG0444|consen 311 GIG 313 (1255)
T ss_pred chh
Confidence 764
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=227.56 Aligned_cols=314 Identities=26% Similarity=0.394 Sum_probs=224.4
Q ss_pred CHHHHHHHHHHHHhCCCCC------CCCCCCCCCCCCcc----------------ceeecCCCEEEEEcCCCCcCCC--C
Q 004248 47 SRTELAALFELRSSLGLRR------RDWPRKVDPCLVWN----------------GVRCQNGSVVGINISGFRRTRL--G 102 (766)
Q Consensus 47 ~~~~~~aLl~~k~~l~~~~------~~W~~~~~~C~~W~----------------gv~C~~~~v~~l~l~~~~~~~~--~ 102 (766)
.++|.+.+++..+.|..+. ..|...+|+|- =+ -|.|.++.||.+...+...... +
T Consensus 61 ~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~-~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~~~~ 139 (754)
T PRK15370 61 SPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCI-LSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSASG 139 (754)
T ss_pred CHHHHHHHHHHHHHhcCCchhhccccccCCCCcccc-cCCcchhhheeeecCCceEEecCCCcccccccccccccccCCC
Confidence 4578899999998886432 35988888883 22 2788877787776655321111 0
Q ss_pred CCCC-ccc------------------hhhh-----ccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccC
Q 004248 103 SQNP-RFA------------------ADAL-----VNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVI 158 (766)
Q Consensus 103 ~~~~-~~~------------------~~~l-----~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~ 158 (766)
.... ... ...+ .-..+...|+++++.++ .+|..+ .++|+.|+|++|.++. +
T Consensus 140 ~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-L 214 (754)
T PRK15370 140 SKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-L 214 (754)
T ss_pred CCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-C
Confidence 0000 000 0011 11245678888888776 477655 3578999999999984 5
Q ss_pred CcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCC
Q 004248 159 PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLS 238 (766)
Q Consensus 159 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 238 (766)
|..+. ++|++|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|+|++|+++ .+|..+. +
T Consensus 215 P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~ 283 (754)
T PRK15370 215 PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E 283 (754)
T ss_pred Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C
Confidence 65554 58999999999998 5677654 47999999999998 6777764 58999999999998 5777664 5
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEc
Q 004248 239 KLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVL 318 (766)
Q Consensus 239 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L 318 (766)
+|+.|+|++|+|++ +|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+ .++|+.|++
T Consensus 284 sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~L 353 (754)
T PRK15370 284 ELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASL---PPELQVLDV 353 (754)
T ss_pred CCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhh---cCcccEEEC
Confidence 89999999999985 565443 478999999999985 555443 688999999999885 66544 258899999
Q ss_pred cCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcC-------CCCCCEEeccCC
Q 004248 319 RQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV-------LGRFRLVDLSGN 391 (766)
Q Consensus 319 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~-------l~~l~~ldLs~N 391 (766)
++|+|+. +|..+ .++|+.|+|++|+|+ .+|... ...|+.|++++|++. .+|.. ++++..++|.+|
T Consensus 354 s~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 354 SKNQITV-LPETL--PPTITTLDVSRNALT-NLPENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCCCCCc-CChhh--cCCcCEEECCCCcCC-CCCHhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence 9999985 45544 368999999999998 466433 246888999999987 44532 356788999999
Q ss_pred cCcc
Q 004248 392 YFEG 395 (766)
Q Consensus 392 ~l~g 395 (766)
.|+.
T Consensus 426 pls~ 429 (754)
T PRK15370 426 PFSE 429 (754)
T ss_pred CccH
Confidence 9873
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=193.31 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=108.6
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccC----------HHHH-----------------HHHHHHHhhcCCCCc
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK----------TEAY-----------------LLELDFFSKVSHARL 591 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~----------~~~~-----------------~~E~~~l~~l~H~ni 591 (766)
...||+|+||.||+|...+|+.||||+++..... ..+| .+|++.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v 81 (190)
T cd05147 2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI 81 (190)
T ss_pred CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3679999999999999879999999999754221 0122 349999999998887
Q ss_pred ccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhh-ccCCCCCeEecCCCCCC
Q 004248 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL-HHECTLPFVHRDVQASS 670 (766)
Q Consensus 592 v~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~iiHrDlKp~N 670 (766)
.....+.. ...++||||++++++....... ..+++.+...++.|++.+|+|+ |+. +|+||||||+|
T Consensus 82 ~~p~~~~~---~~~~iVmE~i~g~~l~~~~~~~-------~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~N 148 (190)
T cd05147 82 PCPEPILL---KSHVLVMEFIGDDGWAAPRLKD-------APLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYN 148 (190)
T ss_pred CCCcEEEe---cCCEEEEEEeCCCCCcchhhhc-------CCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHH
Confidence 54443222 2348999999988776543222 2388999999999999999999 565 89999999999
Q ss_pred eeeCCCCcEEeccchhhhhc
Q 004248 671 ILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 671 ILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++ ++.++|+|||+|...
T Consensus 149 Ili~-~~~v~LiDFG~a~~~ 167 (190)
T cd05147 149 LLYH-DGKLYIIDVSQSVEH 167 (190)
T ss_pred EEEE-CCcEEEEEccccccC
Confidence 9998 478999999999754
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-21 Score=219.39 Aligned_cols=240 Identities=30% Similarity=0.330 Sum_probs=136.5
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
..-..|+++.+.+. .+|+.+. ++|+.|++++|+++. +|. .+++|++|+|++|+|+ .+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence 44567899999886 6888764 478899999999885 554 2578999999999988 45643 35677888
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
|++|.++ .+|..+ ++|+.|+|++|+++ .+|.. +++|+.|+|++|++++ +|... .+|+.|++++|++++
T Consensus 269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc
Confidence 8888776 345432 45667777777776 34542 3567777777777764 33321 235555555565553
Q ss_pred cCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS 356 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 356 (766)
+|.. ..+|+.|++++|+|++ +|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|+|++ +|..
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~-LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l-- 400 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-- 400 (788)
T ss_pred -cccc---ccccceEecCCCccCC-CCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc--
Confidence 3321 1345556666655553 3321 1244445555555543 2221 1345555555555542 3321
Q ss_pred cCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccccChh
Q 004248 357 NVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEY 400 (766)
Q Consensus 357 ~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~p~~ 400 (766)
...+..|++++|.+++ +|....+|+.|+|++|+|+ .+|..
T Consensus 401 --~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~s 440 (788)
T PRK15387 401 --PSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPES 440 (788)
T ss_pred --ccCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChH
Confidence 1344455555555442 3433344444555555544 34443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-22 Score=240.67 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=111.2
Q ss_pred hcCC-CCcccceeEEEe------cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC
Q 004248 585 KVSH-ARLVPLLGHCME------RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657 (766)
Q Consensus 585 ~l~H-~niv~l~~~~~~------~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~ 657 (766)
.++| +||++++++|.. .....+.++||++ ++|.++|.... ..+++.+++.|+.||++||+|||++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~- 99 (793)
T PLN00181 28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLDNPD------RSVDAFECFHVFRQIVEIVNAAHSQ- 99 (793)
T ss_pred hhhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHhccc------ccccHHHHHHHHHHHHHHHHHHHhC-
Confidence 3455 578888886611 1235788899885 69999997432 2489999999999999999999997
Q ss_pred CCCeEecCCCCCCeeeCC-------------------CCcEEeccchhhhhcCCC-------------------Ccccee
Q 004248 658 TLPFVHRDVQASSILLDD-------------------KFEVRLGSLSEVCAQGGD-------------------AHQSRI 699 (766)
Q Consensus 658 ~~~iiHrDlKp~NILl~~-------------------~~~~kl~DFG~a~~~~~~-------------------~~~~~~ 699 (766)
+||||||||+||||+. ++.+|++|||+++..... .....+
T Consensus 100 --gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 177 (793)
T PLN00181 100 --GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAME 177 (793)
T ss_pred --CeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCC
Confidence 9999999999999954 456777788877642110 011357
Q ss_pred eecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 700 TRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 700 t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
|++|+|||.+.... ++.++|||||||++|||++|..|+.
T Consensus 178 t~~Y~APE~~~~~~---------~~~~sDVwSlGviL~ELl~~~~~~~ 216 (793)
T PLN00181 178 MSWYTSPEEDNGSS---------SNCASDVYRLGVLLFELFCPVSSRE 216 (793)
T ss_pred CcceEChhhhccCC---------CCchhhhhhHHHHHHHHhhCCCchh
Confidence 88999999876544 4789999999999999999998874
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-21 Score=188.41 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=111.1
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccC---------------------------HHHHHHHHHHHhhcCCCCc
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---------------------------TEAYLLELDFFSKVSHARL 591 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---------------------------~~~~~~E~~~l~~l~H~ni 591 (766)
...||+|+||.||+|...+|+.||||.++..... ...+.+|.+.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i 81 (190)
T cd05145 2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV 81 (190)
T ss_pred CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999778999999998754210 1124679999999999998
Q ss_pred ccceeEEEecCCcEEEEEeeCCCCChhhh-hhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCCCC
Q 004248 592 VPLLGHCMERENEKFLVYKYMPNGDLSSS-LYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQAS 669 (766)
Q Consensus 592 v~l~~~~~~~~~~~~lV~Ey~~~GsL~~~-l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlKp~ 669 (766)
.....+... ..++||||++++++... +.+ ..++..+...++.|++.++.|+|+ . +|+||||||+
T Consensus 82 ~~p~~~~~~---~~~lVmE~~~g~~~~~~~l~~--------~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~ 147 (190)
T cd05145 82 PVPEPILLK---KNVLVMEFIGDDGSPAPRLKD--------VPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEY 147 (190)
T ss_pred CCceEEEec---CCEEEEEEecCCCchhhhhhh--------ccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChh
Confidence 655544332 34899999998865443 322 136788889999999999999999 7 9999999999
Q ss_pred CeeeCCCCcEEeccchhhhhcC
Q 004248 670 SILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 670 NILl~~~~~~kl~DFG~a~~~~ 691 (766)
||+++ +++++|+|||+++...
T Consensus 148 NIll~-~~~~~liDFG~a~~~~ 168 (190)
T cd05145 148 NILYH-DGKPYIIDVSQAVELD 168 (190)
T ss_pred hEEEE-CCCEEEEEcccceecC
Confidence 99999 8999999999997653
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=225.58 Aligned_cols=279 Identities=19% Similarity=0.224 Sum_probs=172.6
Q ss_pred hhhccCCCCCEEecCCCC------CCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCc
Q 004248 111 DALVNLTHLASFNASRFL------LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS 184 (766)
Q Consensus 111 ~~l~~l~~L~~L~ls~n~------l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 184 (766)
.++..+.+|+.|.+..+. ....+|..+..-..+|+.|++.+|.+. .+|..| .+.+|+.|+|++|++. .+|.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 456667777777665432 223345444331234666666655553 344444 3455666666666554 3455
Q ss_pred cccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCC
Q 004248 185 SLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSL 264 (766)
Q Consensus 185 ~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 264 (766)
.+..+++|+.|+|++|...+.+|. ++.+++|+.|+|++|.....+|..++++++|+.|++++|.....+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 555566666666655543344442 5555566666666555444555555666666666665554444455443 45555
Q ss_pred CEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCC-----------------------------ccCCCCcccE
Q 004248 265 VDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN-----------------------------LFPTVSQLQI 315 (766)
Q Consensus 265 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~-----------------------------~~~~l~~L~~ 315 (766)
+.|++++|...+.+|.. .++|+.|++++|.+. .+|.. .+...++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 55555555444444432 234455555555443 22211 1122457899
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCcc
Q 004248 316 IVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 316 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g 395 (766)
|+|++|...+.+|..++++++|+.|++++|+..+.+|... .+++|+.|++++|.....+|....+++.|+|++|.++
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~- 859 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE- 859 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccccccccCEeECCCCCCc-
Confidence 9999999888899999999999999999987667888644 5688999999998777778877789999999999997
Q ss_pred ccChhh
Q 004248 396 RVPEYV 401 (766)
Q Consensus 396 ~~p~~~ 401 (766)
.+|.++
T Consensus 860 ~iP~si 865 (1153)
T PLN03210 860 EVPWWI 865 (1153)
T ss_pred cChHHH
Confidence 577765
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-24 Score=218.11 Aligned_cols=242 Identities=31% Similarity=0.477 Sum_probs=119.1
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
|..|.+|++++|.++ ..|++++.+..++.|+.++|+++ .+|+.++.+.+|..|+.++|.+. .+|++++.+..|+.|+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 444455555555544 23444455555555555555544 44455555555555555555544 3444444555555555
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
..+|+++ .+|++++++.+|..|++.+|++....|..+ +++.|++||...|-+. .+|+.++.+.+|+.|++..|++.
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 5555544 344445555555555555555543333322 2455555555554443 44555555555555555555543
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL 380 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l 380 (766)
.+| .|++++.|..|+++.|++.-.+.+-..++++|..|||..|++. +.|+.. ..+.+|..||+|+|.+++ +|..+
T Consensus 220 ~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sL 294 (565)
T KOG0472|consen 220 FLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSL 294 (565)
T ss_pred cCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCccc
Confidence 233 2345555555555555554433333445555555555555555 444332 233445555555555543 33333
Q ss_pred C--CCCEEeccCCcCc
Q 004248 381 G--RFRLVDLSGNYFE 394 (766)
Q Consensus 381 ~--~l~~ldLs~N~l~ 394 (766)
+ .|+.|-+.+|.+.
T Consensus 295 gnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 295 GNLHLKFLALEGNPLR 310 (565)
T ss_pred ccceeeehhhcCCchH
Confidence 3 3566777777764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-24 Score=216.83 Aligned_cols=248 Identities=29% Similarity=0.437 Sum_probs=219.7
Q ss_pred hhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCC
Q 004248 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLS 190 (766)
Q Consensus 111 ~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~ 190 (766)
..+.+|..|..+++.+|.+. ++|+.++. +..++.|+.++|+++ .+|+.++++.+|+.|+.++|.+. .+|++++.+.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~ 137 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLL 137 (565)
T ss_pred HhhhcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHh
Confidence 35778999999999999885 68889987 999999999999998 68899999999999999999998 7889999999
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q 004248 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLS 270 (766)
Q Consensus 191 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 270 (766)
.|+.|+..+|+++ ..|+.+.++.+|..|++.+|++.. +|+..-+++.|+.||...|-+. .+|..++.+.+|+-|+|.
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 9999999999998 689999999999999999999995 4555555999999999999885 789999999999999999
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCC
Q 004248 271 MNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350 (766)
Q Consensus 271 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 350 (766)
.|++. .+| +|.++..|.+|+++.|++. .+|......+.+|.+|||+.|+++. .|+.+.-+.+|.+||+|+|.+++.
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccC
Confidence 99997 667 8999999999999999997 6888888899999999999999985 677788899999999999999964
Q ss_pred CCcccccCCCCCcEEEccCCcC
Q 004248 351 LPNSRSNVNTSTVELNISQNMF 372 (766)
Q Consensus 351 ~p~~~~~~~~~l~~L~ls~N~l 372 (766)
.+ ... .+ .|..|-+-+|.+
T Consensus 291 p~-sLg-nl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 291 PY-SLG-NL-HLKFLALEGNPL 309 (565)
T ss_pred Cc-ccc-cc-eeeehhhcCCch
Confidence 44 333 33 677788888865
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-20 Score=219.80 Aligned_cols=272 Identities=24% Similarity=0.368 Sum_probs=207.9
Q ss_pred eeecCCCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCc
Q 004248 81 VRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPF 160 (766)
Q Consensus 81 v~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~ 160 (766)
..|-....+.+++++...+.+ +.. + .++|+.|++++|.+. .+|..+ .++|++|+|++|.|+. +|.
T Consensus 173 ~~Cl~~~~~~L~L~~~~LtsL---P~~-----I--p~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~Lts-LP~ 237 (754)
T PRK15370 173 RDCLKNNKTELRLKILGLTTI---PAC-----I--PEQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTS-IPA 237 (754)
T ss_pred HhhcccCceEEEeCCCCcCcC---Ccc-----c--ccCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCcccc-CCh
Confidence 356555678888887554322 211 1 246899999999987 688876 4589999999999984 576
Q ss_pred ccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCc
Q 004248 161 SLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKL 240 (766)
Q Consensus 161 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 240 (766)
.+. .+|+.|+|++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|+.|+|++|++++ +|..+. ++|
T Consensus 238 ~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL 306 (754)
T PRK15370 238 TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGI 306 (754)
T ss_pred hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhH
Confidence 553 47999999999998 6787775 58999999999998 5787764 589999999999984 676553 579
Q ss_pred cEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccC
Q 004248 241 QYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ 320 (766)
Q Consensus 241 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~ 320 (766)
+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+|+ .+|..+ .++|+.|+|++
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~ 376 (754)
T PRK15370 307 THLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSR 376 (754)
T ss_pred HHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCC
Confidence 999999999985 565543 689999999999985 676664 79999999999997 466544 25899999999
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc---cCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccc
Q 004248 321 NGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS---NVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGR 396 (766)
Q Consensus 321 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~---~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~ 396 (766)
|+|+..++ .+. .+|+.|++++|+|+ .+|.... ...+.+..|++.+|.++. ..+.+|+.+ ++.|.+.|.
T Consensus 377 N~Lt~LP~-~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~~L~~L-l~s~~~~gp 447 (754)
T PRK15370 377 NALTNLPE-NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQNMQRL-MSSVGYQGP 447 (754)
T ss_pred CcCCCCCH-hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHHHHHHh-hhcccccCC
Confidence 99996544 443 47999999999998 6665332 234677899999999874 234555555 555666554
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-20 Score=197.74 Aligned_cols=198 Identities=20% Similarity=0.216 Sum_probs=162.5
Q ss_pred CCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCC-CcccceeEEEecCCcEEEEEe
Q 004248 536 FSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHA-RLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~-niv~l~~~~~~~~~~~~lV~E 610 (766)
|...+.+|.|+||.||++... ..+|+|.+...... .+.|.+|+.+++.+.|+ +|+++.+++.. ....++++|
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 78 (384)
T COG0515 2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD-EGSLYLVME 78 (384)
T ss_pred ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEec-CCEEEEEEe
Confidence 566788999999999999977 78999999654432 56799999999999988 79999997743 445799999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG~a~~ 689 (766)
|+.++++.+++...... ..+.......++.|++.+++|+|+. +++|||+||+||+++..+ .+|++|||.++.
T Consensus 79 ~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~ 151 (384)
T COG0515 79 YVDGGSLEDLLKKIGRK----GPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKL 151 (384)
T ss_pred cCCCCcHHHHHHhcccc----cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCccee
Confidence 99999999777643210 2488889999999999999999998 899999999999999988 799999999975
Q ss_pred cCC---------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGG---------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~---------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ......+|..|++||........+ .+...|+||+|++++++++|+.||...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~------~~~~~D~~s~g~~~~~~~~~~~p~~~~ 214 (384)
T COG0515 152 LPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAY------ASSSSDIWSLGITLYELLTGLPPFEGE 214 (384)
T ss_pred cCCCCccccccccccccccccccCCHHHhcCCCCCC------CCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 532 235667899999999876531001 467899999999999999999997443
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-21 Score=190.24 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=128.6
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHH----H------HHHHHHHHhhcCCCCcccceeEEEecC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTE----A------YLLELDFFSKVSHARLVPLLGHCMERE 602 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~----~------~~~E~~~l~~l~H~niv~l~~~~~~~~ 602 (766)
.++|...+++|+|+||.||.+.. ++..+|||.+.......+ . +.+|++.+.+++||+|....+++...+
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~ 108 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE 108 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence 46799999999999999999655 577899999965443322 2 689999999999999999998755322
Q ss_pred -------CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC
Q 004248 603 -------NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675 (766)
Q Consensus 603 -------~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~ 675 (766)
+..++||||++|.+|.++.. ++. ....+++.++..+|+. +++|||+||+||++++
T Consensus 109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~-----------~~~----~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~ 170 (232)
T PRK10359 109 RKTLRYAHTYIMLIEYIEGVELNDMPE-----------ISE----DVKAKIKASIESLHQH---GMVSGDPHKGNFIVSK 170 (232)
T ss_pred cccccccCCeEEEEEEECCccHHHhhh-----------ccH----HHHHHHHHHHHHHHHc---CCccCCCChHHEEEeC
Confidence 35799999999999987631 222 2456899999999998 9999999999999999
Q ss_pred CCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh
Q 004248 676 KFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 676 ~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
++ ++++|||..+....+... +.+.... .++.++|+|||||.+.-..
T Consensus 171 ~g-i~liDfg~~~~~~e~~a~----------d~~vler--------~y~~~~di~~lg~~~~~~~ 216 (232)
T PRK10359 171 NG-LRIIDLSGKRCTAQRKAK----------DRIDLER--------HYGIKNEIKDLGYYLLIYK 216 (232)
T ss_pred CC-EEEEECCCcccccchhhH----------HHHHHHh--------HhcccccccceeEeehHHH
Confidence 88 999999987644211111 0011111 1356899999999887543
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-20 Score=180.01 Aligned_cols=183 Identities=13% Similarity=0.054 Sum_probs=133.1
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-----HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEe
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-----TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-----~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.....+++|+||+||.+.. ++.+++.+.+....-- ...|.+|+++|++++ |++|.+++++ +..+++||
T Consensus 5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~-----~~~~lvme 78 (218)
T PRK12274 5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW-----DGRHLDRS 78 (218)
T ss_pred ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE-----cCEEEEEe
Confidence 3467899999999997665 6778888887654331 235889999999995 5889888874 24699999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCC-CCCCeeeCCCCcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV-QASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDl-Kp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|++|.+|.+.+.. ....++.|++++|+|+|+. +|+|||| ||+|||++.++.++|+|||+|..
T Consensus 79 yI~G~~L~~~~~~--------------~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~ 141 (218)
T PRK12274 79 YLAGAAMYQRPPR--------------GDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVR 141 (218)
T ss_pred eecCccHHhhhhh--------------hhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCcee
Confidence 9999888654311 1134778999999999998 9999999 79999999999999999999985
Q ss_pred cCCCCc----------------cceeeecccCCCCCCCCceeeeeeeeecc-cccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGGDAH----------------QSRITRLLRLPQSSEQGSSGMVIYLFIIF-TIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~~~~----------------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~-~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
...... ....++.|.+|+-...-. +.+ ...++++-|.-+|.++||+.|+.+..
T Consensus 142 ~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~--------~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~ 211 (218)
T PRK12274 142 GNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLK--------RTSWIRELWFATGKPVYRFVTRRVLHWEDN 211 (218)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhc--------cchhHHHHHHHhcchHHHHHhccCCccccC
Confidence 432221 011233333333111000 011 46799999999999999999885443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=205.71 Aligned_cols=237 Identities=29% Similarity=0.342 Sum_probs=185.2
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
..-..|||++|.++ .+|..+. ++|+.|+|++|+++ .+|.. +++|++|+|++|+++. +|.. .++|+.|+|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 45678999999998 5787775 48999999999999 47753 5789999999999994 6653 468999999
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN 301 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~ 301 (766)
++|.++ .+|.. .++|+.|++++|+++. +|.. +++|+.|+|++|++++ +|... .+|+.|++++|++++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc-
Confidence 999998 46653 3678899999999984 5653 4789999999999986 45432 457889999999974
Q ss_pred cCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCCC
Q 004248 302 LSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLG 381 (766)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~ 381 (766)
+|. ...+|+.|+|++|+|++.++ . .++|+.|++++|+|++ +|.. ..+|..|++++|.+.+ +|...+
T Consensus 337 LP~----lp~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~-LP~l----~~~L~~LdLs~N~Lt~-LP~l~s 402 (788)
T PRK15387 337 LPT----LPSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTS-LPAL----PSGLKELIVSGNRLTS-LPVLPS 402 (788)
T ss_pred ccc----cccccceEecCCCccCCCCC-C---Ccccceehhhcccccc-Cccc----ccccceEEecCCcccC-CCCccc
Confidence 553 12589999999999997543 2 3678999999999994 7743 3578999999999985 777778
Q ss_pred CCCEEeccCCcCccccChhhhh-cccCCCcccCCCCC
Q 004248 382 RFRLVDLSGNYFEGRVPEYVHS-NASSLDSNCLQNVP 417 (766)
Q Consensus 382 ~l~~ldLs~N~l~g~~p~~~~~-~~~~l~~n~l~~~~ 417 (766)
+|+.|++++|+|++ +|..... ....+++|.+...|
T Consensus 403 ~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred CCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccC
Confidence 99999999999985 6754211 11256677777554
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=179.60 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=106.5
Q ss_pred CCccceeecCCcceEEEEEEcCCcEEEEEEeecccc-CHHHHHHHHHHHhhc-----CCCCcccceeEEEecC--CcEE-
Q 004248 536 FSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV-KTEAYLLELDFFSKV-----SHARLVPLLGHCMERE--NEKF- 606 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l-----~H~niv~l~~~~~~~~--~~~~- 606 (766)
+...+.||+|+||.||+ ...++.. +||++..... ..+++.+|+++++++ .||||++++|++.++. +.++
T Consensus 4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~ 81 (210)
T PRK10345 4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD 81 (210)
T ss_pred cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence 45578999999999996 3334444 7998876433 356799999999999 5799999999876643 2333
Q ss_pred EEEee--CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHh-hhhccCCCCCeEecCCCCCCeeeCC----CCcE
Q 004248 607 LVYKY--MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL-SYLHHECTLPFVHRDVQASSILLDD----KFEV 679 (766)
Q Consensus 607 lV~Ey--~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL-~yLH~~~~~~iiHrDlKp~NILl~~----~~~~ 679 (766)
+|+|| +++|+|.+++.+. .+++. ..++.+++.++ +|||++ +||||||||+|||++. +.++
T Consensus 82 ~I~e~~G~~~~tL~~~l~~~--------~~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~ 148 (210)
T PRK10345 82 VIADFDGKPSITLTEFAEQC--------RYEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIP 148 (210)
T ss_pred EEecCCCCcchhHHHHHHcc--------cccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcE
Confidence 78999 6689999999642 14554 35678888888 999998 9999999999999974 3479
Q ss_pred Eecc-chhhh
Q 004248 680 RLGS-LSEVC 688 (766)
Q Consensus 680 kl~D-FG~a~ 688 (766)
+|+| ||...
T Consensus 149 ~LiDg~G~~~ 158 (210)
T PRK10345 149 VVCDNIGEST 158 (210)
T ss_pred EEEECCCCcc
Confidence 9999 55443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=213.87 Aligned_cols=269 Identities=23% Similarity=0.268 Sum_probs=197.4
Q ss_pred cCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 115 ~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
...+|+.|++++|.+. .+|..+. .+++|+.|+|++|...+.+| .++.+++|+.|+|++|.....+|..+.++++|+.
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 4578899999998774 5676664 48999999999887666777 4888999999999998877789999999999999
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
|++++|...+.+|..+ ++++|+.|+|++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++..
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccch
Confidence 9999876656788766 7899999999998766667653 467889999999885 566655 577788887776432
Q ss_pred -------CccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCC
Q 004248 275 -------SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347 (766)
Q Consensus 275 -------~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 347 (766)
....|......++|+.|++++|...+.+|.. +.++++|+.|++++|...+.+|..+ ++++|+.|++++|..
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 1112222334467888888888777777765 4778888888888876555566655 678888888888766
Q ss_pred CCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccC-CcCccccChh
Q 004248 348 TGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSG-NYFEGRVPEY 400 (766)
Q Consensus 348 ~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~-N~l~g~~p~~ 400 (766)
...+|.. ..+++.|+|++|.+. .+|. .+++|+.|+|++ |++.+ +|..
T Consensus 838 L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~-l~~~ 888 (1153)
T PLN03210 838 LRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR-VSLN 888 (1153)
T ss_pred ccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc-cCcc
Confidence 6566642 356778888888776 3453 467788888887 45543 5443
|
syringae 6; Provisional |
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-19 Score=189.31 Aligned_cols=198 Identities=16% Similarity=0.092 Sum_probs=152.4
Q ss_pred CCCccceeecCCcceEEEEEEcC--CcEEEEEEeeccccC-HHHHHHHHHHHhhcCC----CCcccceeEEEecCCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGILEG--GIPVVIKRIDLQSVK-TEAYLLELDFFSKVSH----ARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~--g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H----~niv~l~~~~~~~~~~~~l 607 (766)
.|...+.||+|+||.||++.... ...+|+|........ ...+..|+.++..+.+ +++.++++.....+...|+
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i 98 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI 98 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence 78899999999999999999544 357888877654322 2368889999999873 5778888755323457899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-----CcEEec
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-----FEVRLG 682 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-----~~~kl~ 682 (766)
||+.+ |.+|.++...... ..++-.+...|+.|++.+|+++|+. ++|||||||+|+.+... ..+.+.
T Consensus 99 VM~l~-G~sL~dl~~~~~~-----~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~ll 169 (322)
T KOG1164|consen 99 VMSLL-GPSLEDLRKRNPP-----GRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLL 169 (322)
T ss_pred EEecc-CccHHHHHHhCCC-----CCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEE
Confidence 99988 5699997754431 3589999999999999999999998 99999999999999865 469999
Q ss_pred cchhhh--hc-CCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVC--AQ-GGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~--~~-~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+|+ .. ... .....||..|.++....+.. .+.+-|+||++-++.|+..|..|+...
T Consensus 170 DfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e---------~~r~DDles~~Y~l~el~~g~LPW~~~ 240 (322)
T KOG1164|consen 170 DFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIE---------QGRRDDLESLFYMLLELLKGSLPWEAL 240 (322)
T ss_pred ecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCc---------cCCchhhhhHHHHHHHHhcCCCCCccc
Confidence 999998 32 111 11234666776666544443 467889999999999999999998443
Q ss_pred c
Q 004248 750 R 750 (766)
Q Consensus 750 ~ 750 (766)
+
T Consensus 241 ~ 241 (322)
T KOG1164|consen 241 E 241 (322)
T ss_pred c
Confidence 3
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-19 Score=177.46 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=91.3
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~ 694 (766)
|+|.++++.++ ..++|.++..|+.||++||+|||++ + ||+|||++.++.+|+ ||.++......
T Consensus 1 GsL~~~l~~~~------~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~ 63 (176)
T smart00750 1 VSLADILEVRG------RPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQ 63 (176)
T ss_pred CcHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeecccc
Confidence 78999997543 2499999999999999999999987 3 999999999999999 99988764332
Q ss_pred ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 695 ~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..+|+.|+|||.+.... ++.|+|||||||++|||+||+.||...
T Consensus 64 --~~g~~~y~aPE~~~~~~---------~~~~~DiwSlG~il~elltg~~p~~~~ 107 (176)
T smart00750 64 --SRVDPYFMAPEVIQGQS---------YTEKADIYSLGITLYEALDYELPYNEE 107 (176)
T ss_pred --CCCcccccChHHhcCCC---------CcchhhHHHHHHHHHHHHhCCCCcccc
Confidence 25789999999986554 468999999999999999999999543
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-20 Score=203.16 Aligned_cols=185 Identities=17% Similarity=0.142 Sum_probs=152.9
Q ss_pred eeecCCcceEEEEE----EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEeeC
Q 004248 541 LIKNGHSGDLFRGI----LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~----~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|+|+||.|+.+. .+.|.-+|+|.+.+.... ......|..++..++ ||.+|+++. +++.+...+++++|.
T Consensus 1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhy-afqt~~kl~l~ld~~ 79 (612)
T KOG0603|consen 1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHY-AFQTDGKLYLILDFL 79 (612)
T ss_pred CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeee-eeccccchhHhhhhc
Confidence 36899999999765 344778899988654322 225566888899997 999999985 556678899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
.+|+|...+..... +++.....+...+|.|++++|.. +|+|||+|++||+++.+|++|+.|||+.+..-+
T Consensus 80 rgg~lft~l~~~~~-------f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~ 149 (612)
T KOG0603|consen 80 RGGDLFTRLSKEVM-------FDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVK 149 (612)
T ss_pred ccchhhhccccCCc-------hHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHh
Confidence 99999988865443 77777788888999999999997 999999999999999999999999999987632
Q ss_pred CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... +||..|||||+..+ ....+|+|||||+++||+||-.||..
T Consensus 150 ~~~~-cgt~eymApEI~~g-----------h~~a~D~ws~gvl~felltg~~pf~~ 193 (612)
T KOG0603|consen 150 EKIA-CGTYEYRAPEIING-----------HLSAADWWSFGVLAFELLTGTLPFGG 193 (612)
T ss_pred hhhc-ccchhhhhhHhhhc-----------cCCcccchhhhhhHHHHhhCCCCCch
Confidence 2222 88999999999862 35788999999999999999999964
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-21 Score=213.25 Aligned_cols=264 Identities=27% Similarity=0.339 Sum_probs=174.0
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++|+.|+.++|.+....+... -.+|+++|+++|++++ +|+.++.+.+|+.|+..+|+|+ .+|..+...++|+.|+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeeccccc---cccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 344555555555542222211 2355666666666654 3456666666666666666664 4566666666666666
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCC-CCCC-CccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLS-KLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
+.+|.+. .+|.....+++|++|||..|++. .+|+.+ ..+. +|+.|+.+.|.+....-..=..++.|+.|++.+|.|
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 6666665 45555566666666666666665 344322 1122 245555555555422211112345688888889998
Q ss_pred CccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcc
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 354 (766)
+...-+.+.+.++|+.|+|++|.+. .+|...+.++..|+.|+||+|+++. +|+.+.+++.|++|...+|++. .+|+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fPe- 447 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFPE- 447 (1081)
T ss_pred cccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-echh-
Confidence 8877777888889999999999885 6787778888899999999999975 4588888899999999999888 6663
Q ss_pred cccCCCCCcEEEccCCcCcc-CCCcCC--CCCCEEeccCCc
Q 004248 355 RSNVNTSTVELNISQNMFYG-GLTPVL--GRFRLVDLSGNY 392 (766)
Q Consensus 355 ~~~~~~~l~~L~ls~N~l~g-~~~~~l--~~l~~ldLs~N~ 392 (766)
......++.+|+|.|+++- .+|..+ ++|++|||++|.
T Consensus 448 -~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 -LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 3566788899999998864 344322 689999999997
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=176.57 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=111.2
Q ss_pred CCCccceeecCCcceEEEEE--EcCCcEEEEEEeeccccC-------------------------HHHHHHHHHHHhhcC
Q 004248 535 DFSDANLIKNGHSGDLFRGI--LEGGIPVVIKRIDLQSVK-------------------------TEAYLLELDFFSKVS 587 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~--~~~g~~vavK~l~~~~~~-------------------------~~~~~~E~~~l~~l~ 587 (766)
.|+..+.||+|+||.||+|. ..+|+.||||.++..... ...+.+|++++.++.
T Consensus 29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~ 108 (237)
T smart00090 29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY 108 (237)
T ss_pred hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999998 578999999998753210 123578999999997
Q ss_pred CCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC-eEecCC
Q 004248 588 HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP-FVHRDV 666 (766)
Q Consensus 588 H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~-iiHrDl 666 (766)
|.. +.....+.. ...++||||+++++|........ .+...+...++.|++.+++|||+. + |+||||
T Consensus 109 ~~~-i~~p~~~~~--~~~~lV~E~~~g~~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Di 175 (237)
T smart00090 109 EAG-VPVPKPIAW--RRNVLVMEFIGGDGLPAPRLKDV-------EPEEEEEFELYDDILEEMRKLYKE---GELVHGDL 175 (237)
T ss_pred hcC-CCCCeeeEe--cCceEEEEEecCCcccccccccC-------CcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCC
Confidence 643 222222222 23589999999988876543221 245556778999999999999998 8 999999
Q ss_pred CCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 667 QASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 667 Kp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
||+||+++ ++++||+|||.+...+.
T Consensus 176 kp~NIli~-~~~i~LiDFg~a~~~~~ 200 (237)
T smart00090 176 SEYNILVH-DGKVVIIDVSQSVELDH 200 (237)
T ss_pred ChhhEEEE-CCCEEEEEChhhhccCC
Confidence 99999999 88999999999876543
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=167.10 Aligned_cols=206 Identities=16% Similarity=0.127 Sum_probs=150.5
Q ss_pred HHHHHHHhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCC-CcccceeEEEecCC
Q 004248 526 YQQLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHA-RLVPLLGHCMEREN 603 (766)
Q Consensus 526 ~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~-niv~l~~~~~~~~~ 603 (766)
.+++..+ +.|..+++||.|+||.+|.|. ..+|..||||.=+.. ....+...|.++.+.++|- -|-.+..|..+ +.
T Consensus 8 ~~~~iv~-gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~-a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e-~~ 84 (341)
T KOG1163|consen 8 LEELIVG-GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK-AKHPQLLYESKVYRILQGGVGIPHIRHYGTE-KD 84 (341)
T ss_pred hhhheec-cceEEEEeecCCchhheeeeeeccCCceEEEEeeccc-CCCcchhHHHHHHHHhccCCCCchhhhhccc-cc
Confidence 3444433 579999999999999999998 788999999975433 2344677899999998763 34444443333 45
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEE
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVR 680 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~k 680 (766)
.-.+|||.. |.+|+++..--. ..++..+.+-+|-|++.-++|+|.+ ++|||||||+|.|..-+ ..+.
T Consensus 85 ynvlVMdLL-GPsLEdLfnfC~------R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~ 154 (341)
T KOG1163|consen 85 YNVLVMDLL-GPSLEDLFNFCS------RRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLY 154 (341)
T ss_pred cceeeeecc-CccHHHHHHHHh------hhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEE
Confidence 678999998 569999875321 2488889999999999999999998 89999999999998743 4588
Q ss_pred eccchhhhhcCCCCc----------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 681 LGSLSEVCAQGGDAH----------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 681 l~DFG~a~~~~~~~~----------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
++|||+|+...+..+ .-.||..|.+-.... ..+-+.+-|+=|+|-||...--|..||..-.
T Consensus 155 LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~---------g~eqSRRDDmeSvgYvLmYfnrG~LPWQglk 225 (341)
T KOG1163|consen 155 LIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHL---------GIEQSRRDDMESVGYVLMYFNRGSLPWQGLK 225 (341)
T ss_pred EEeccchhhhccccccccCccccCCccceeeeehhhhhhh---------hhhhhhhhhhhhhcceeeeeecCCCcccccc
Confidence 999999987633221 123444443322111 1234667899999999999999999996544
Q ss_pred ccc
Q 004248 751 FGV 753 (766)
Q Consensus 751 ~~~ 753 (766)
...
T Consensus 226 a~t 228 (341)
T KOG1163|consen 226 AAT 228 (341)
T ss_pred hhh
Confidence 443
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-18 Score=168.14 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=111.8
Q ss_pred HHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-----------------------HHHHHHHHHHHh
Q 004248 528 QLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-----------------------TEAYLLELDFFS 584 (766)
Q Consensus 528 ~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-----------------------~~~~~~E~~~l~ 584 (766)
++.+...-|...+.||+|+||.||+|..++|+.||||+++..... ...+.+|..++.
T Consensus 9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 88 (198)
T cd05144 9 TLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALK 88 (198)
T ss_pred HHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHH
Confidence 444444347778999999999999999888999999987643210 123678999999
Q ss_pred hcCCCC--cccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeE
Q 004248 585 KVSHAR--LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFV 662 (766)
Q Consensus 585 ~l~H~n--iv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ii 662 (766)
++.|++ +.+.++ ....++||||+++++|.+.... .....++.+++.++.++|+. +|+
T Consensus 89 ~l~~~~i~v~~~~~-----~~~~~lv~e~~~g~~L~~~~~~-------------~~~~~~~~~i~~~l~~lh~~---gi~ 147 (198)
T cd05144 89 ALYEEGFPVPKPID-----WNRHAVVMEYIDGVELYRVRVL-------------EDPEEVLDEILEEIVKAYKH---GII 147 (198)
T ss_pred HHHHcCCCCCceee-----cCCceEEEEEeCCcchhhcccc-------------ccHHHHHHHHHHHHHHHHHC---CCC
Confidence 998884 334333 2346999999999998765421 23456888999999999997 999
Q ss_pred ecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 663 HRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 663 HrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
||||||+||++++++++||+|||.+...+
T Consensus 148 H~Dl~p~Nill~~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 148 HGDLSEFNILVDDDEKIYIIDWPQMVSTD 176 (198)
T ss_pred cCCCCcccEEEcCCCcEEEEECCccccCC
Confidence 99999999999999999999999986553
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-19 Score=203.30 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=153.0
Q ss_pred CccceeecCCcceEEEEEE-cCCcEEEEEEee----ccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 537 SDANLIKNGHSGDLFRGIL-EGGIPVVIKRID----LQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~----~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
...+++|.|++|.|+.+.. ...+..+.|... ..... ...+..|..+-..++|||++..+..+.+. ...+-+
T Consensus 321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~-~~~~~~ 399 (601)
T KOG0590|consen 321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEI-DGILQS 399 (601)
T ss_pred CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhc-ccchhh
Confidence 3468899999998888873 334445555332 11111 12366788888899999999888766653 344555
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++ ||..++.... .+.-.++..++.|+..|+.|+|+. +|.|||+|++|++++.+|.+||+|||.+.
T Consensus 400 mE~~~~-Dlf~~~~~~~-------~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~ 468 (601)
T KOG0590|consen 400 MEYCPY-DLFSLVMSNG-------KLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAAS 468 (601)
T ss_pred hhcccH-HHHHHHhccc-------ccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcce
Confidence 999999 9999997642 377888899999999999999998 99999999999999999999999999886
Q ss_pred hcC--C-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 689 AQG--G-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 689 ~~~--~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
... . .....+|+..|.|||++.+..|.. ...||||.|||+..|++|+.||......
T Consensus 469 vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydp--------r~vDiwS~~ii~~~m~~~~~~Wk~a~~~ 531 (601)
T KOG0590|consen 469 VFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDP--------RAVDVWSCGIIYICMILGRFPWKVAKKS 531 (601)
T ss_pred eeccCcchhhhhhcCcccCCcCcCcccccccccCc--------chhhhhhccceEEEEecCCCcccccccc
Confidence 542 1 134567899999999998887753 5789999999999999999999544444
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-17 Score=168.26 Aligned_cols=133 Identities=19% Similarity=0.227 Sum_probs=111.8
Q ss_pred ceeecCCcceEEEEEEcCCcEEEEEEeeccccC---------HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---------TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+.||+|++|.||+|.. +|..|+||+....... ..++.+|++++..++|++|.....++.. .+..++|||
T Consensus 2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-~~~~~lv~e 79 (211)
T PRK14879 2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVD-PENFIIVME 79 (211)
T ss_pred cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEe-CCCCEEEEE
Confidence 5799999999999987 6678999986532211 2468899999999999998877776655 456899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|++|++|.+++... .+ ++..++.+++.+|+++|+. +++|||+||+||+++ ++.++|+|||.++.
T Consensus 80 ~~~G~~L~~~~~~~----------~~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~ 143 (211)
T PRK14879 80 YIEGEPLKDLINSN----------GM-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF 143 (211)
T ss_pred EeCCcCHHHHHHhc----------cH-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence 99999999988532 22 7889999999999999997 999999999999999 78999999999875
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-20 Score=205.77 Aligned_cols=265 Identities=29% Similarity=0.398 Sum_probs=211.9
Q ss_pred CCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEE
Q 004248 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 195 (766)
-.+|++++++.|.+. .+|+|++. +.+|+.|+..+|+++ .+|..+...++|++|....|.+. -+|+....+++|++|
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 357899999999986 58899886 999999999999995 78888999999999999999998 688888899999999
Q ss_pred EccCCCCCCCCCc-ccCCCCC-CCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCc
Q 004248 196 DLSRNSLTGNIPT-SFGLLKN-LSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273 (766)
Q Consensus 196 ~Ls~N~l~~~~p~-~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 273 (766)
||..|++. .+|+ .|..+.. |+.|+.+.|.+....-.+=..++.|+.|++.+|.++...-..+.+.+.|+.|+|++|+
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99999997 4555 3444443 7888888888874322222356789999999999998777778899999999999999
Q ss_pred CCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCC-CCC
Q 004248 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG-PLP 352 (766)
Q Consensus 274 l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~~p 352 (766)
+.......+.++..|++|+||+|.++ .+|..+ .++..|++|...+|++...| .+..+++|+.+|+|.|+|+- .+|
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv-a~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTV-ANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHH-HhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhh
Confidence 97544456789999999999999997 677655 78899999999999997654 78899999999999999983 334
Q ss_pred cccccCCCCCcEEEccCCcC---ccCCCcCCCCCCEEeccCC
Q 004248 353 NSRSNVNTSTVELNISQNMF---YGGLTPVLGRFRLVDLSGN 391 (766)
Q Consensus 353 ~~~~~~~~~l~~L~ls~N~l---~g~~~~~l~~l~~ldLs~N 391 (766)
... ..++|++||+++|.- .-.-.+.+..+...++.-|
T Consensus 471 ~~~--p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 471 EAL--PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhC--CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 321 227899999999963 2233344555666666655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-19 Score=196.12 Aligned_cols=234 Identities=26% Similarity=0.269 Sum_probs=116.7
Q ss_pred ccCCCCCEEecCCCCCCCC----CchhhhhCCCCCCEEEccCCCCCc------cCCcccCCCCCCcEEEeecCcCCCCCC
Q 004248 114 VNLTHLASFNASRFLLPGS----IPDWLGQQLPTLQALDLRSCSISG------VIPFSLGNLTNLTSLYLSDNGLTGTIP 183 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~----ip~~~~~~l~~L~~L~Ls~N~l~g------~~p~~l~~l~~L~~L~Ls~N~l~~~~p 183 (766)
..+.+|+.++++++.+... ++..+. ..++|++|+++++.+.+ .++..+..+++|+.|+|++|.+.+..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3444566666666655332 333332 25556666666665542 223345556666666666666654444
Q ss_pred ccccCCCC---CCEEEccCCCCCC----CCCcccCCC-CCCCEEeccCCcCCCC----CCCCCCCCCCccEEEccCCCCC
Q 004248 184 SSLGQLSV---LSVLDLSRNSLTG----NIPTSFGLL-KNLSSLDISSNYLTGS----IPPGLGTLSKLQYLNVSNNSLA 251 (766)
Q Consensus 184 ~~l~~L~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 251 (766)
..+..+.+ |++|++++|++++ .+...+..+ ++|+.|+|++|.+++. ++..+..+++|++|++++|.++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 44444443 6666666666552 122233444 5666666666666532 2223444555666666666665
Q ss_pred CC----CccccCCCCCCCEEEccCCcCCcc----CCcccCCCCCCCEEEccCccCccccCCCcc----CCCCcccEEEcc
Q 004248 252 SS----IPAQLGDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQKFVIGNNFLSGNLSVNLF----PTVSQLQIIVLR 319 (766)
Q Consensus 252 ~~----~p~~l~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~----~~l~~L~~L~L~ 319 (766)
+. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+. .....|+.|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 31 222334445666666666665432 223344555566666666655431111111 112455555555
Q ss_pred CCCCCC----CCCcccCCCCCCCEEEccCCCCC
Q 004248 320 QNGFTG----PPPDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 320 ~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
+|.++. .+...+..+++|+++|+++|.++
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 555541 12233344455555555555555
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=167.34 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=146.5
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEec-CCcEEEEEee
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMER-ENEKFLVYKY 611 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~-~~~~~lV~Ey 611 (766)
+|...++||+|+||+.+.|+ +-+++.||||.=.. +....+...|.+..+.|. .+.|-..+. +.. +.+-.||+|.
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPr-kS~APQLrdEYr~YKlL~g~~GIP~vYY--FGqeG~~NiLVidL 105 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPR-KSEAPQLRDEYRTYKLLGGTEGIPQVYY--FGQEGKYNILVIDL 105 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEeccc-cCCcchHHHHHHHHHHHcCCCCCCceee--eccccchhhhhhhh
Confidence 58889999999999999999 77899999997533 233446777888777775 577776653 332 3456899999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-----cEEeccchh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-----EVRLGSLSE 686 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-----~~kl~DFG~ 686 (766)
. |.+|+|+..--+ ..++..+...||.|++.-++|+|++ ..|.|||||+|.||..-+ .+.+.|||+
T Consensus 106 L-GPSLEDLFD~Cg------R~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGm 175 (449)
T KOG1165|consen 106 L-GPSLEDLFDLCG------RRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGM 175 (449)
T ss_pred h-CcCHHHHHHHhc------CcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccc
Confidence 8 569998875433 3489999999999999999999998 899999999999997543 488999999
Q ss_pred hhhcCCCCc----------cceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 687 VCAQGGDAH----------QSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 687 a~~~~~~~~----------~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
|+.+.++.+ .-.||..||+--+-.+.. -+.+-|.=|+|-|.+..+-|..||.
T Consensus 176 AK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrE---------QSRRDDLEaLGHvFmYFLRGsLPWQ 237 (449)
T KOG1165|consen 176 AKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGRE---------QSRRDDLEALGHVFMYFLRGSLPWQ 237 (449)
T ss_pred hhhhcCccccccCccccccccccceeeeEeeccccch---------hhhhhhHHHhhhhhhhhccCCCccc
Confidence 997643322 224555555543332222 3567899999999999999999994
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-20 Score=188.27 Aligned_cols=272 Identities=21% Similarity=0.211 Sum_probs=143.5
Q ss_pred CEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeec-CcCCCCCCccccCCCCCCEEEcc
Q 004248 120 ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSD-NGLTGTIPSSLGQLSVLSVLDLS 198 (766)
Q Consensus 120 ~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls 198 (766)
..++|..|.++ .||+..++.+++|+.||||+|.|+.+-|.+|.++.+|..|-+.+ |+|+...-..|++|..|+.|.+.
T Consensus 70 veirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 45566666663 56666666677777777777777777777777777776665555 77775444567777777777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCC-CCCCCCCccEEEccCCCCC------------CCCccccCCCCCCC
Q 004248 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP-GLGTLSKLQYLNVSNNSLA------------SSIPAQLGDLDSLV 265 (766)
Q Consensus 199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~------------~~~p~~l~~l~~L~ 265 (766)
-|++.-...+.|..|++|..|.+.+|.+. .++. .|..+.+++.+.+..|.+. ...|.+++...-..
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 77777666667777777777777777776 3444 6677777777777766632 11222222222222
Q ss_pred EEEccCCcCCccCCcccCC-CCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccC
Q 004248 266 DLDLSMNSLSGSVPSELRG-LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344 (766)
Q Consensus 266 ~L~Ls~N~l~g~~p~~l~~-l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 344 (766)
...+.++++...-+..|.. +.++..-..+.....+.-|..-|..+++|+.|+|++|+++++-+.+|.....++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 2223333222211111110 001100011111222233333445555555555555555555555555555555555555
Q ss_pred CCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCc
Q 004248 345 NNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFE 394 (766)
Q Consensus 345 N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~ 394 (766)
|++. .+....+.....|..|+|.+|+++.-.|. .+..|..|+|-.|.|.
T Consensus 308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 5554 22222233334444455555544433222 2334445555555543
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-19 Score=171.45 Aligned_cols=194 Identities=18% Similarity=0.310 Sum_probs=151.1
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCC
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
..+|.+...|+.|+|+++++ .+++|.+..+... .++|..|.-.++-..||||.+++|.|.. .....++..|||.|
T Consensus 195 ~tkl~e~hsgelwrgrwqgn-divakil~vr~~t~risrdfneefp~lrifshpnilpvlgacns-ppnlv~isq~mp~g 272 (448)
T KOG0195|consen 195 ITKLAESHSGELWRGRWQGN-DIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNS-PPNLVIISQYMPFG 272 (448)
T ss_pred hhhhccCCCcccccccccCc-chhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccC-CCCceEeeeeccch
Confidence 34678888999999998855 4566776544332 4679999999999999999999999976 45689999999999
Q ss_pred ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec--cchhhhhcCCC
Q 004248 616 DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGD 693 (766)
Q Consensus 616 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~--DFG~a~~~~~~ 693 (766)
+|+.+||+... ...+..+.+++|.+||+|++|||+- .|-|..--+.+..|+||++.++||+ |--++- ...
T Consensus 273 slynvlhe~t~-----vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsf--qe~ 344 (448)
T KOG0195|consen 273 SLYNVLHEQTS-----VVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSF--QEV 344 (448)
T ss_pred HHHHHHhcCcc-----EEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeee--ecc
Confidence 99999997654 3478889999999999999999985 4445555789999999999999884 311111 111
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.....+.+++||.+....... --.++|+|||.++++|+.|...||.+..
T Consensus 345 --gr~y~pawmspealqrkped~------n~raadmwsfaillwel~trevpfadls 393 (448)
T KOG0195|consen 345 --GRAYSPAWMSPEALQRKPEDL------NIRAADMWSFAILLWELNTREVPFADLS 393 (448)
T ss_pred --ccccCcccCCHHHHhcCchhc------chhhhhHHHHHHHHHHhhccccccccCC
Confidence 122357899999887665444 2368999999999999999999996443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-19 Score=193.26 Aligned_cols=202 Identities=24% Similarity=0.281 Sum_probs=120.6
Q ss_pred EecCCCCCC-CCCchhhhhCCCCCCEEEccCCCCCcc----CCcccCCCCCCcEEEeecCcCCC------CCCccccCCC
Q 004248 122 FNASRFLLP-GSIPDWLGQQLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTG------TIPSSLGQLS 190 (766)
Q Consensus 122 L~ls~n~l~-g~ip~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~L~ 190 (766)
|+|..+.+. +..+..+. .+.+|+.|++++|.++.. ++..+...++|++|+++++.+.+ .++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~-~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLP-KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHH-HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 456666665 33444443 377789999999888543 55566777888888888887762 2334566677
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCC---CCEEeccCCcCCC----CCCCCCCCC-CCccEEEccCCCCCCC----Ccccc
Q 004248 191 VLSVLDLSRNSLTGNIPTSFGLLKN---LSSLDISSNYLTG----SIPPGLGTL-SKLQYLNVSNNSLASS----IPAQL 258 (766)
Q Consensus 191 ~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l 258 (766)
+|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888877655555554444 7777777777762 222334455 6777777777777642 23344
Q ss_pred CCCCCCCEEEccCCcCCcc----CCcccCCCCCCCEEEccCccCccccCC---CccCCCCcccEEEccCCCCC
Q 004248 259 GDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQKFVIGNNFLSGNLSV---NLFPTVSQLQIIVLRQNGFT 324 (766)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~g~~~~---~~~~~l~~L~~L~L~~N~l~ 324 (766)
..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.-.. ..+..+++|+.|++++|.++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 5556677777777766632 223344445666666666655422110 01233344555555555444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-19 Score=166.61 Aligned_cols=156 Identities=31% Similarity=0.554 Sum_probs=80.1
Q ss_pred ccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCC
Q 004248 114 VNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 193 (766)
.++++++.|.+|+|.++ .+|+.+.. |.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 34444445555555543 34444443 555555555555554 34445555555555555555554 4555555555555
Q ss_pred EEEccCCCCCC-CCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 004248 194 VLDLSRNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 194 ~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 272 (766)
+|||++|++.. .+|..|..++.|+.|+|++|.+. .+|+.++++++|+.|.+.+|.+- .+|.+++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 55555555432 34555555555555555555554 44555555555555555555543 34555555555555555555
Q ss_pred cCC
Q 004248 273 SLS 275 (766)
Q Consensus 273 ~l~ 275 (766)
+++
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 554
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=189.48 Aligned_cols=137 Identities=21% Similarity=0.211 Sum_probs=110.2
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEE-eeccc--------cCHHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKR-IDLQS--------VKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~-l~~~~--------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
...|...++||+|+||.||+|...+.. +++|+ +.... ...+++.+|++++++++|++++....++.. +.
T Consensus 332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-~~ 409 (535)
T PRK09605 332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD-PE 409 (535)
T ss_pred ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe-CC
Confidence 344566799999999999999876544 44443 22111 113568899999999999999887776665 45
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++||||+++++|.+++. .+..++.+++++|.|||+. +|+|||+||+|||+ +++.++|+|
T Consensus 410 ~~~lv~E~~~g~~L~~~l~---------------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liD 470 (535)
T PRK09605 410 EKTIVMEYIGGKDLKDVLE---------------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLID 470 (535)
T ss_pred CCEEEEEecCCCcHHHHHH---------------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEe
Confidence 6799999999999998874 3467899999999999997 99999999999999 678999999
Q ss_pred chhhhhc
Q 004248 684 LSEVCAQ 690 (766)
Q Consensus 684 FG~a~~~ 690 (766)
||+++..
T Consensus 471 FGla~~~ 477 (535)
T PRK09605 471 FGLGKYS 477 (535)
T ss_pred CcccccC
Confidence 9999764
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-17 Score=163.29 Aligned_cols=130 Identities=19% Similarity=0.202 Sum_probs=105.5
Q ss_pred eeecCCcceEEEEEEcCCcEEEEEEeecccc---------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 541 LIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~---------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.||+|+||.||+|.. +|..|++|....... ..+++.+|++++..++|+++.....++.. ++..++||||
T Consensus 1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~-~~~~~lv~e~ 78 (199)
T TIGR03724 1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVD-PDNKTIVMEY 78 (199)
T ss_pred CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-CCCCEEEEEE
Confidence 489999999999984 567899998643211 12567889999999999886655554544 4567999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
++|++|.+++.... . .++.+++++|+++|+. +++|||+||+||+++ ++.+++.|||.++..
T Consensus 79 ~~g~~l~~~~~~~~--------~------~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~ 139 (199)
T TIGR03724 79 IEGKPLKDVIEEGN--------D------ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS 139 (199)
T ss_pred ECCccHHHHHhhcH--------H------HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence 99999998875321 0 7899999999999997 999999999999999 899999999998753
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-19 Score=161.25 Aligned_cols=126 Identities=33% Similarity=0.529 Sum_probs=55.5
Q ss_pred CcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccC
Q 004248 168 LTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247 (766)
Q Consensus 168 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 247 (766)
.+.|-||+|+++ .+|+.+..|.+|++|++++|+++ .+|.+++.+++|+.|+++-|++. .+|.+|+.++.|+.|||.+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 333344444443 33334444444444444444443 34444444444444444444443 3444444444444444444
Q ss_pred CCCCC-CCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCcc
Q 004248 248 NSLAS-SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNF 297 (766)
Q Consensus 248 N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~ 297 (766)
|+++. .+|..|..++.|+.|+|++|.|. .+|..++++++|+.|.+..|.
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 44432 23444444444555555555543 344444444444444444433
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-17 Score=168.30 Aligned_cols=208 Identities=20% Similarity=0.174 Sum_probs=133.8
Q ss_pred CCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCC-----------CCcccceeEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSH-----------ARLVPLLGHCM 599 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H-----------~niv~l~~~~~ 599 (766)
+...+.||.|+++.||.++. ++|+.+|||........ .+++.+|.-....+.+ .-++++ +...
T Consensus 14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~-d~~~ 92 (288)
T PF14531_consen 14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPL-DLLR 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---S-EEEE
T ss_pred EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeee-EEEE
Confidence 34568899999999999996 56999999988543322 4567777755555433 222222 2111
Q ss_pred --------ecC--C------cEEEEEeeCCCCChhhhhh---ccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC
Q 004248 600 --------ERE--N------EKFLVYKYMPNGDLSSSLY---RKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP 660 (766)
Q Consensus 600 --------~~~--~------~~~lV~Ey~~~GsL~~~l~---~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ 660 (766)
+.. . ..+++|+-+. +||.+++. .... ....+....|..+..|+++.+++||+. +
T Consensus 93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~-~dL~~~~~~l~~~~~---~~~~l~~~arl~lT~Q~I~lvA~Lh~~---G 165 (288)
T PF14531_consen 93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQ-GDLQDLVEALFSRAQ---THSPLAFAARLSLTVQMIRLVANLHSY---G 165 (288)
T ss_dssp ETTS-SEEEECETTEEEEEESEEEEEE--S-EEHHHHHHHHHHHTT---TSHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred EcCCCcceecCCCCccceeehhhhccchhh-hcHHHHHHHHhhccc---ccchhHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 101 1 2367888885 69988754 2221 112355677888889999999999998 9
Q ss_pred eEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh
Q 004248 661 FVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 661 iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
+||+||||+|++++.+|.++|+||+.....+........+..|.+||....... +......+|.+.|.|++|+++|.|.
T Consensus 166 lVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~-~~~~~~~~t~~~DaW~LG~~ly~lW 244 (288)
T PF14531_consen 166 LVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQ-FGQNNAPYTFATDAWQLGITLYSLW 244 (288)
T ss_dssp EEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTS-CHHSEEEE-HHHHHHHHHHHHHHHH
T ss_pred eEecccceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcc-cCcccceeeeccCHHHHHHHHHHHH
Confidence 999999999999999999999999987766544333344567888885432110 1112234799999999999999999
Q ss_pred cCCCCCCCCccc
Q 004248 741 FNNHLNLSSRFG 752 (766)
Q Consensus 741 tG~~p~~~~~~~ 752 (766)
+|+.||....+.
T Consensus 245 C~~lPf~~~~~~ 256 (288)
T PF14531_consen 245 CGRLPFGLSSPE 256 (288)
T ss_dssp HSS-STCCCGGG
T ss_pred HccCCCCCCCcc
Confidence 999999654443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=181.24 Aligned_cols=157 Identities=38% Similarity=0.629 Sum_probs=89.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CCCCCCCCCCC----CccceeecCCCEEEEEcCCCCcCCCCCCCCccchhhhccCCC
Q 004248 44 RLSSRTELAALFELRSSLGLRR-RDWPRKVDPCL----VWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTH 118 (766)
Q Consensus 44 ~~~~~~~~~aLl~~k~~l~~~~-~~W~~~~~~C~----~W~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~ 118 (766)
..+.++|.+||+++|+++.... .+|+. |+|+ .|.||.|.....+ +
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~g--~~C~p~~~~w~Gv~C~~~~~~------------~---------------- 416 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLRFGWNG--DPCVPQQHPWSGADCQFDSTK------------G---------------- 416 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcccCCCCC--CCCCCcccccccceeeccCCC------------C----------------
Confidence 3456789999999999987543 48963 6774 7999999521000 0
Q ss_pred CCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEcc
Q 004248 119 LASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198 (766)
Q Consensus 119 L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 198 (766)
...++.|+|++|.++|.+|..++++++|+.|+|++|+++|.+|..++++++|+.|+|+
T Consensus 417 ----------------------~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs 474 (623)
T PLN03150 417 ----------------------KWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474 (623)
T ss_pred ----------------------ceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC
Confidence 0112334444444444444444555555555555555555555555555555555555
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCC-CCccEEEccCCCCCC
Q 004248 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL-SKLQYLNVSNNSLAS 252 (766)
Q Consensus 199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ 252 (766)
+|+++|.+|..++++++|+.|+|++|+++|.+|..++.+ .++..+++.+|....
T Consensus 475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 555555555555555555555555555555555555432 345566777775443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-18 Score=178.83 Aligned_cols=258 Identities=21% Similarity=0.255 Sum_probs=195.8
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccC-CCCCCCCCcccCCCCCCCEEec
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR-NSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L 221 (766)
.-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|+.|.+|.+|..|-+.+ |+|+...-..|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 346799999999999999999999999999999999988999999999988877665 9998766678999999999999
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCC------------ccCCcccCCCCCCC
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS------------GSVPSELRGLRSLQ 289 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------g~~p~~l~~l~~L~ 289 (766)
.-|++.-...+.|..|++|..|.+.+|.+...--..+..+.+++.+.+..|.+- ...|..+++.+-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999999888888999999999999999997443348889999999999999843 12333344444444
Q ss_pred EEEccCccCccccCCCccC-CCCcccEEEccCCCCCCC-CCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEc
Q 004248 290 KFVIGNNFLSGNLSVNLFP-TVSQLQIIVLRQNGFTGP-PPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNI 367 (766)
Q Consensus 290 ~L~ls~N~l~g~~~~~~~~-~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~l 367 (766)
-..+.++.+. .++..-|. .+..+..-..+.....++ +...|..+++|+.|+|++|++++.-+ ..+.....+++|.|
T Consensus 228 p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-hhhcchhhhhhhhc
Confidence 3444444432 22222121 111221111222323333 44579999999999999999996555 45567789999999
Q ss_pred cCCcCc---cCCCcCCCCCCEEeccCCcCccccChhhh
Q 004248 368 SQNMFY---GGLTPVLGRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 368 s~N~l~---g~~~~~l~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
..|++. +.....+..|+.|+|++|+++-..|..+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 999874 56677889999999999999988787663
|
|
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-16 Score=155.81 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHH----------------------HHHHHHHHhhcCCCC--c
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEA----------------------YLLELDFFSKVSHAR--L 591 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~----------------------~~~E~~~l~~l~H~n--i 591 (766)
.+.||+|+||.||+|...+|+.||||++...... ... ...|.+.+.++.+.. +
T Consensus 2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~ 81 (187)
T cd05119 2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV 81 (187)
T ss_pred CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 4679999999999999888999999998653221 111 135666677765543 3
Q ss_pred ccceeEEEecCCcEEEEEeeCCCCChhhh-hhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCCCC
Q 004248 592 VPLLGHCMERENEKFLVYKYMPNGDLSSS-LYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQAS 669 (766)
Q Consensus 592 v~l~~~~~~~~~~~~lV~Ey~~~GsL~~~-l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlKp~ 669 (766)
.+.++ + ...++||||+++|++... +.... .. .+...++.+++.++.++|. . +|+||||||+
T Consensus 82 ~~~~~-~----~~~~lv~e~~~g~~~~~~~l~~~~--------~~-~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~ 144 (187)
T cd05119 82 PKPID-L----NRHVLVMEFIGGDGIPAPRLKDVR--------LL-EDPEELYDQILELMRKLYREA---GLVHGDLSEY 144 (187)
T ss_pred CceEe-c----CCCEEEEEEeCCCCccChhhhhhh--------hc-ccHHHHHHHHHHHHHHHhhcc---CcCcCCCChh
Confidence 33332 1 246899999999664322 21110 11 5567899999999999998 6 9999999999
Q ss_pred CeeeCCCCcEEeccchhhhhc
Q 004248 670 SILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 670 NILl~~~~~~kl~DFG~a~~~ 690 (766)
||+++ ++.++++|||.+...
T Consensus 145 Nili~-~~~~~liDfg~a~~~ 164 (187)
T cd05119 145 NILVD-DGKVYIIDVPQAVEI 164 (187)
T ss_pred hEEEE-CCcEEEEECcccccc
Confidence 99999 899999999998654
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=143.21 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=111.9
Q ss_pred ccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCC--CCcccceeEEEecCCcEEEEEeeCCCC
Q 004248 538 DANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSH--ARLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
+.+.||+|.++.||++...+ ..+++|....... ..++.+|+.++..++| .++.+++++... .+..+++|||++++
T Consensus 2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~-~~~~~~v~e~~~g~ 78 (155)
T cd05120 2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK-GADREREVAILQLLARKGLPVPKVLASGES-DGWSYLLMEWIEGE 78 (155)
T ss_pred cceecccccccceEEEEecC-CeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCccEEEEEecCCe
Confidence 45789999999999999765 7899999865433 5679999999999987 488888875543 46789999999987
Q ss_pred ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 616 DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 616 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
.+..+ ++.....++.+++++++++|....++++|||+||+||++++.+.+++.|||.++.
T Consensus 79 ~~~~~--------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~ 138 (155)
T cd05120 79 TLDEV--------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY 138 (155)
T ss_pred ecccC--------------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence 66543 4556778899999999999986445799999999999999989999999998864
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-16 Score=169.76 Aligned_cols=155 Identities=20% Similarity=0.319 Sum_probs=125.7
Q ss_pred HhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCe-
Q 004248 583 FSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF- 661 (766)
Q Consensus 583 l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i- 661 (766)
|+.+.|.|+.+++|.+... ...+.|.+||+.|+|.+.+.... ..++|.....+.++|+.||+|+|+- +|
T Consensus 1 l~~l~h~n~~~f~g~~~~~-~~~~~i~~~c~rGsl~D~i~~~~------~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~ 70 (484)
T KOG1023|consen 1 LRQLDHDNLNKFIGASVDG-PEMIVIWEYCSRGSLLDILSNED------IKLDYFFILSFIRDISKGLAYLHNS---PIG 70 (484)
T ss_pred CcccchhhhhhheeeEecC-CceEEEEeeecCccHHhHHhccc------cCccHHHHHHHHHHHHHHHHHHhcC---cce
Confidence 4678999999999999974 78999999999999999997632 4599999999999999999999985 44
Q ss_pred EecCCCCCCeeeCCCCcEEeccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHH
Q 004248 662 VHRDVQASSILLDDKFEVRLGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPL 736 (766)
Q Consensus 662 iHrDlKp~NILl~~~~~~kl~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl 736 (766)
.|+.++++|+++|....+|++|||+.....+ ..+...-...|.|||.+........ ....+.++||||||+++
T Consensus 71 ~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~--~~~~~~~gdiYs~~ii~ 148 (484)
T KOG1023|consen 71 YHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSL--ESALTQKGDIYSFGIIM 148 (484)
T ss_pred eeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccc--cccccccCCeehHHHHH
Confidence 8999999999999999999999999876531 1222223446899998765432221 01147899999999999
Q ss_pred HHHhcCCCCCCCC
Q 004248 737 FSAIFNNHLNLSS 749 (766)
Q Consensus 737 ~elltG~~p~~~~ 749 (766)
+|+++.+.||...
T Consensus 149 ~ei~~r~~~~~~~ 161 (484)
T KOG1023|consen 149 YEILFRSGPFDLR 161 (484)
T ss_pred HHHHhccCccccc
Confidence 9999999999653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-17 Score=183.96 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=148.1
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeeccc--cCHHHHHHHHHH--HhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQS--VKTEAYLLELDF--FSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~--~~~~~~~~E~~~--l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+|...+-+|++.|=+|.||+.+.|. |+||++-+.. ...+.|.++++- ..-++|||.+++... ...+...|+|-+
T Consensus 24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~-~~t~kAAylvRq 101 (1431)
T KOG1240|consen 24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKV-LVTDKAAYLVRQ 101 (1431)
T ss_pred ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHH-HHhhHHHHHHHH
Confidence 5667789999999999999988886 9999885443 223445443332 455689999998764 333456799999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|..+ +|+|.|..+. .+...+.+-||.|+..|+.-+|.. +|.|+|||.+||||++..-+.|+||.--+..
T Consensus 102 yvkh-nLyDRlSTRP-------FL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPt 170 (1431)
T KOG1240|consen 102 YVKH-NLYDRLSTRP-------FLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPT 170 (1431)
T ss_pred HHhh-hhhhhhccch-------HHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCc
Confidence 9986 9999986553 377788888999999999999997 9999999999999999999999999865532
Q ss_pred --C-CCCc-------cceeeecccCCCCCCCCceeee--e-eeeecccccceecchHHHHHHhc-CCCCC
Q 004248 691 --G-GDAH-------QSRITRLLRLPQSSEQGSSGMV--I-YLFIIFTIFHIYFHGNPLFSAIF-NNHLN 746 (766)
Q Consensus 691 --~-~~~~-------~~~~t~~y~aPe~~~~~~~g~~--~-~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~ 746 (766)
. +... ++..-..|.|||.+.... |+. . .-+..+++.||+|.|||++|+++ |++||
T Consensus 171 YLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~-~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF 239 (1431)
T KOG1240|consen 171 YLPEDNPADFTFFFDTSRRRTCYIAPERFVSAL-GKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLF 239 (1431)
T ss_pred cCCCCCcccceEEEecCCceeeecChHhhhccc-cccccCCcccccChhhhhhhhhHHHHHHHhcCCCcc
Confidence 1 1111 112233699999664422 111 1 12237899999999999999998 67777
|
|
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=153.54 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=105.8
Q ss_pred cceee-cCCcceEEEEEEcCCcEEEEEEeeccc--------------cCHHHHHHHHHHHhhcCCCCc--ccceeEEEec
Q 004248 539 ANLIK-NGHSGDLFRGILEGGIPVVIKRIDLQS--------------VKTEAYLLELDFFSKVSHARL--VPLLGHCMER 601 (766)
Q Consensus 539 ~~~ig-~G~~g~Vy~~~~~~g~~vavK~l~~~~--------------~~~~~~~~E~~~l~~l~H~ni--v~l~~~~~~~ 601 (766)
..+|| .|+.|+||++... +..+|||+..... ....++.+|++++.+++|++| ++.+++....
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~ 114 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR 114 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence 46788 8999999999875 6689999875321 113468899999999998885 6677654432
Q ss_pred CCc---EEEEEeeCCC-CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 602 ENE---KFLVYKYMPN-GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 602 ~~~---~~lV~Ey~~~-GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
... .++||||+++ ++|.+++.+. .++.. .+.+++.++.+||+. +|+||||||+|||++.++
T Consensus 115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~--------~l~~~----~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~ 179 (239)
T PRK01723 115 HGLFYRADILIERIEGARDLVALLQEA--------PLSEE----QWQAIGQLIARFHDA---GVYHADLNAHNILLDPDG 179 (239)
T ss_pred cCcceeeeEEEEecCCCCCHHHHHhcC--------CCCHH----HHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCC
Confidence 222 3599999997 6899888532 14433 356899999999998 999999999999999999
Q ss_pred cEEeccchhhhhc
Q 004248 678 EVRLGSLSEVCAQ 690 (766)
Q Consensus 678 ~~kl~DFG~a~~~ 690 (766)
.++|+|||.++..
T Consensus 180 ~v~LIDfg~~~~~ 192 (239)
T PRK01723 180 KFWLIDFDRGELR 192 (239)
T ss_pred CEEEEECCCcccC
Confidence 9999999988653
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-16 Score=180.83 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=144.4
Q ss_pred HhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC---CCCcccceeEEEecCCcEEEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS---HARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~~~~~~lV 608 (766)
..+.|.+.+.||+|+||+||+|...+|+.||+|.=+..... +|.-=.+++.+|+ -+-|.++...+.. .+.-++|
T Consensus 696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W--EfYI~~q~~~RLk~~~~~~~~~~~~a~~~-~~~S~lv 772 (974)
T KOG1166|consen 696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW--EFYICLQVMERLKPQMLPSIMHISSAHVF-QNASVLV 772 (974)
T ss_pred cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce--eeeehHHHHHhhchhhhcchHHHHHHHcc-CCcceee
Confidence 34567788999999999999999777999999986543321 2322334555555 1233444432322 3457999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-------CCcEEe
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-------KFEVRL 681 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-------~~~~kl 681 (766)
+||.+.|+|.+++...+ .++|.-.+.++.|+++-+++||.. +|||+||||+|.||.. ..-++|
T Consensus 773 ~ey~~~Gtlld~~N~~~-------~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~l 842 (974)
T KOG1166|consen 773 SEYSPYGTLLDLINTNK-------VMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYL 842 (974)
T ss_pred eeccccccHHHhhccCC-------CCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEE
Confidence 99999999999997443 389999999999999999999998 9999999999999942 245899
Q ss_pred ccchhhhhc---CC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 682 GSLSEVCAQ---GG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 682 ~DFG~a~~~---~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
+|||.+-.. .+ .......|-.+-.+|...+..+. ..+|.|.+..+++-|+.|+.
T Consensus 843 IDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWt---------Yq~DyfGlAa~~h~mLFG~y 901 (974)
T KOG1166|consen 843 IDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWT---------YQIDYFGLAATVHVMLFGKY 901 (974)
T ss_pred EecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCc---------hhhhhHHHHHHHHHHHHHHH
Confidence 999988543 11 23445567777888888777764 47899999999999999983
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-15 Score=174.10 Aligned_cols=162 Identities=21% Similarity=0.262 Sum_probs=116.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
..+|+.++.|-.|+||.||..+. .+.+.+|+ ++.++.. +.| ||..+-+ ..+.|
T Consensus 82 e~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~l----ilR-----------nilt~a~-------npfvv--- 135 (1205)
T KOG0606|consen 82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQNL----ILR-----------NILTFAG-------NPFVV--- 135 (1205)
T ss_pred ccccceeEeeccCCCCceeeeeccccccchhh-cccccch----hhh-----------ccccccC-------Cccee---
Confidence 35788999999999999999984 46788998 4433221 111 1222211 12333
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
||=.+.+...+. ++- +.+.+++|+|+. +|+|||+||+|.+|+.-|++|+.|||+.+...
T Consensus 136 ---gDc~tllk~~g~-------lPv--------dmvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GL 194 (1205)
T KOG0606|consen 136 ---GDCATLLKNIGP-------LPV--------DMVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGL 194 (1205)
T ss_pred ---chhhhhcccCCC-------Ccc--------hhhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhh
Confidence 444444433221 221 227899999997 99999999999999999999999999987421
Q ss_pred -------------CC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 692 -------------GD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 692 -------------~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.+ ....++|+.|.|||++....|| ..+|+|++|+|+||-+-|+.||+...
T Consensus 195 ms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgyg---------kpvdwwamGiIlyeFLVgcvpffGdt 262 (1205)
T KOG0606|consen 195 MSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYG---------KPVDWWAMGIILYEFLVGCVPFFGDT 262 (1205)
T ss_pred hhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccC---------CCccHHHHHHHHHHHheeeeeccCCC
Confidence 01 1235899999999999877665 56799999999999999999997653
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-15 Score=162.43 Aligned_cols=185 Identities=19% Similarity=0.182 Sum_probs=130.7
Q ss_pred ccceeecCCcceEEEEEEcC----CcEEEEEEeeccc-cCHHHHHHHHHHHhhcCCCCccccee-----E--EEe----c
Q 004248 538 DANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQS-VKTEAYLLELDFFSKVSHARLVPLLG-----H--CME----R 601 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~-----~--~~~----~ 601 (766)
..+-.++.++|.+...+... ...++.|+.+.+. .......+++..+....|.+..-+.+ . ... .
T Consensus 248 ~~k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~~~s~~~d~~~s~~~~~~~~~v~~ 327 (516)
T KOG1033|consen 248 ISKSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHSNRSILEDLRPSLFESSKRNKVGK 327 (516)
T ss_pred ccccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccCCcccccCCCCchhhhcccccccc
Confidence 34455666667666655222 3445555554443 22223344555555554444333322 0 000 0
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
....|+.|++|...+|.+||.+++. ....+|...+.++.|++.|++| + +.+|||+||.||....+.++||
T Consensus 328 ~~~lyI~Mn~c~~~tledWl~rr~~----~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kI 397 (516)
T KOG1033|consen 328 KVYLYIQMNLCEKETLEDWLRRRRT----GEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKI 397 (516)
T ss_pred ccchhhhhhhhhhhhHHHHhhCCCc----ccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhh
Confidence 1247899999999999999975543 1347888899999999999999 4 7999999999999999999999
Q ss_pred ccchhhhhcCC---------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 682 GSLSEVCAQGG---------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 682 ~DFG~a~~~~~---------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
+|||+...... +.+...||.+||+||.+.+.. |+.|+||||+|++++|+++
T Consensus 398 gDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~---------y~~kvdIyaLGlil~EL~~ 457 (516)
T KOG1033|consen 398 GDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQ---------YSEKVDIYALGLILAELLI 457 (516)
T ss_pred hhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhh---------hhhhcchhhHHHHHHHHHH
Confidence 99999876522 235568999999999987666 4689999999999999998
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-15 Score=169.79 Aligned_cols=207 Identities=16% Similarity=0.131 Sum_probs=160.2
Q ss_pred CCCccceeecCCcceEEEEEE--cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL--EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV 608 (766)
.|...+.||+|+|+.|-.... .....+|+|.+...... .++...|..+-..+. |+|++++++...+ .+..+++
T Consensus 21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~-~~~~~~~ 99 (601)
T KOG0590|consen 21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSS-PRSYLLS 99 (601)
T ss_pred cccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCC-Ccccccc
Confidence 456667799999999988874 34567788877544322 334455887777776 9999999996554 5678999
Q ss_pred EeeCCCCChhhhh-hccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhc-cCCCCCeEecCCCCCCeeeCCCC-cEEeccch
Q 004248 609 YKYMPNGDLSSSL-YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH-HECTLPFVHRDVQASSILLDDKF-EVRLGSLS 685 (766)
Q Consensus 609 ~Ey~~~GsL~~~l-~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG 685 (766)
+||.++|++.+.+ +... ...+......+..|+..|+.|+| +. ++.|||+||+|.+++..+ ..|++|||
T Consensus 100 ~~~s~g~~~f~~i~~~~~------~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~ 170 (601)
T KOG0590|consen 100 LSYSDGGSLFSKISHPDS------TGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFG 170 (601)
T ss_pred cCcccccccccccccCCc------cCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCch
Confidence 9999999999988 4322 13556667789999999999999 65 899999999999999999 99999999
Q ss_pred hhhhcCC-C-----Ccccee-eecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcccccccee
Q 004248 686 EVCAQGG-D-----AHQSRI-TRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTT 758 (766)
Q Consensus 686 ~a~~~~~-~-----~~~~~~-t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~~~~~~~ 758 (766)
+|..... . ....+| +..|+|||......+ ..+..|+||.|+++.-+++|..|++...........
T Consensus 171 ~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~--------~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~ 242 (601)
T KOG0590|consen 171 LATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAY--------RGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSS 242 (601)
T ss_pred hhccccccCCcceeeecccCCCCCCCCcccccchhh--------cCCCcccccccccccccccCCCCcccccccccccee
Confidence 9976633 1 223467 899999998876432 357899999999999999999998655555444444
Q ss_pred e
Q 004248 759 I 759 (766)
Q Consensus 759 ~ 759 (766)
|
T Consensus 243 ~ 243 (601)
T KOG0590|consen 243 W 243 (601)
T ss_pred e
Confidence 3
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-14 Score=146.86 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=105.9
Q ss_pred CCCCcccceeEEEec--------------------------CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHH
Q 004248 587 SHARLVPLLGHCMER--------------------------ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRL 640 (766)
Q Consensus 587 ~H~niv~l~~~~~~~--------------------------~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~ 640 (766)
+|||||++.++|.+. ....|+||.-.+. +|.+++..+. .+...+.
T Consensus 274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~--------~s~r~~~ 344 (598)
T KOG4158|consen 274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH--------RSYRTGR 344 (598)
T ss_pred CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC--------CchHHHH
Confidence 699999998875432 1247999988875 9999997543 4555667
Q ss_pred HHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC--CCC--cEEeccchhhhhcCC---------CCccceeeecccCCC
Q 004248 641 KIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD--DKF--EVRLGSLSEVCAQGG---------DAHQSRITRLLRLPQ 707 (766)
Q Consensus 641 ~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~--~~~--~~kl~DFG~a~~~~~---------~~~~~~~t~~y~aPe 707 (766)
-+..|+.+|+.|||.+ +|.|||+|++|||+. +|+ ...|+|||.+-..+. ..-...|....||||
T Consensus 345 ~~laQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPE 421 (598)
T KOG4158|consen 345 VILAQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPE 421 (598)
T ss_pred HHHHHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchh
Confidence 7888999999999998 999999999999994 444 367899998743211 111123445679999
Q ss_pred CCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 708 SSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 708 ~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+.... .|..+ ..--.|+|.|+.|.+.||+++..-||.+
T Consensus 422 i~ta~-PGp~a--vvny~kAD~WA~GalaYEIfg~~NPFY~ 459 (598)
T KOG4158|consen 422 IATAV-PGPNA--VVNYEKADTWAAGALAYEIFGRSNPFYK 459 (598)
T ss_pred hhhcC-CCCce--eeccchhhhhhhhhhHHHHhccCCcccc
Confidence 65321 11111 0023699999999999999999999964
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=153.31 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=102.1
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccC-----------------------------------------HHHHH
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-----------------------------------------TEAYL 577 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-----------------------------------------~~~~~ 577 (766)
.+.||.|++|.||+|++.+|+.||||+.+..... .-+|.
T Consensus 122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~ 201 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR 201 (437)
T ss_pred CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence 3689999999999999999999999998643100 00255
Q ss_pred HHHHHHhhcC----CCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHH-Hhhh
Q 004248 578 LELDFFSKVS----HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE-GLSY 652 (766)
Q Consensus 578 ~E~~~l~~l~----H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~-gL~y 652 (766)
+|++.+.+++ |.+-|.+-..|.+.....++||||++|++|.++...... .. .+..++..+++ .+..
T Consensus 202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~------~~---~~~~ia~~~~~~~l~q 272 (437)
T TIGR01982 202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA------GL---DRKALAENLARSFLNQ 272 (437)
T ss_pred HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc------CC---CHHHHHHHHHHHHHHH
Confidence 6776666652 333333333343323457999999999999987653211 12 24556776666 4678
Q ss_pred hccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 653 LHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 653 LH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+|+. +++|+|+||.||++++++++++.|||++...+
T Consensus 273 l~~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~ 308 (437)
T TIGR01982 273 VLRD---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLS 308 (437)
T ss_pred HHhC---CceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence 8887 99999999999999999999999999987653
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.8e-15 Score=157.18 Aligned_cols=175 Identities=38% Similarity=0.546 Sum_probs=139.2
Q ss_pred cCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 115 ~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
.|+.-...|++.|.+. .+|..... +-.|+.|.|..|.+. .+|..++++..|++|||+.|+++ .+|..++.|+ |++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 4455556778888774 57776655 677888888888887 67888888888888888888887 6787787775 788
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|.++..| .|..||+|.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 888888886 68888888888888888888887 67888888888888888888886 466677755 488888888888
Q ss_pred CccCCcccCCCCCCCEEEccCccCc
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
+ .+|-.|.+|+.|++|-|.+|.+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC
Confidence 7 78888888888888888888876
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-12 Score=145.53 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=95.4
Q ss_pred CCCccceeecCCcceEEEEEEcC-CcEEEEEEeecccc---------------------------C--------HH----
Q 004248 535 DFSDANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSV---------------------------K--------TE---- 574 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~-g~~vavK~l~~~~~---------------------------~--------~~---- 574 (766)
+|+. +.||+|++|.||+|++.+ |+.||||+++.+.. . .+
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ 199 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHD 199 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHH
Confidence 4666 789999999999999876 99999999964310 0 01
Q ss_pred --HHHHHHHHHhhcC----CCCcccceeEEEecCCcEEEEEeeCCCCChhhh--hhccCCCCCcCCCCCHHHHHHHHHHH
Q 004248 575 --AYLLELDFFSKVS----HARLVPLLGHCMERENEKFLVYKYMPNGDLSSS--LYRKTNTEDDLQSLDWITRLKIAIGA 646 (766)
Q Consensus 575 --~~~~E~~~l~~l~----H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~--l~~~~~~~~~~~~l~~~~~~~i~~~i 646 (766)
+|.+|+..+.+++ +.+.|.+-.++++-..+.++||||++|+.+.++ +...+. +...+.......++.|+
T Consensus 200 ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~---d~~~la~~~v~~~~~Qi 276 (537)
T PRK04750 200 ELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGT---DMKLLAERGVEVFFTQV 276 (537)
T ss_pred hhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence 2455665555553 444444444444333467899999999999874 222110 00112233333344444
Q ss_pred HHHhhhhccCCCCCeEecCCCCCCeeeCCCC----cEEeccchhhhhcC
Q 004248 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKF----EVRLGSLSEVCAQG 691 (766)
Q Consensus 647 a~gL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~kl~DFG~a~~~~ 691 (766)
. .+ +++|+|+||.||+++.++ ++++.|||++...+
T Consensus 277 f-------~~---GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~ 315 (537)
T PRK04750 277 F-------RD---GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN 315 (537)
T ss_pred H-------hC---CeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence 3 33 899999999999999988 99999999987653
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-14 Score=153.73 Aligned_cols=177 Identities=37% Similarity=0.540 Sum_probs=148.0
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+..-...||+.|++. .+|..+..+..|+.|.|..|.+. .+|..+++|..|++|||+.|+++ .+|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 556677899999997 67888888889999999999987 78999999999999999999997 6888888876 89999
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..| .|..||+|+|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 9999987 78888998889999999999986 67888999999999999999987 567777755 4788888888886
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPP 327 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~ 327 (766)
.||.. |..++.|++|.|.+|.++..+
T Consensus 225 ~iPv~-fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 225 YLPVD-FRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred ecchh-hhhhhhheeeeeccCCCCCCh
Confidence 56655 477788888888888776543
|
|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-12 Score=122.67 Aligned_cols=132 Identities=16% Similarity=0.075 Sum_probs=98.0
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChh
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLS 618 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~ 618 (766)
.+.++.|.++.||++... +..|++|...........+.+|+++++.+.+.++++-+-.+.. ...++||||++|.++.
T Consensus 3 ~~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~e~i~G~~l~ 79 (170)
T cd05151 3 ISPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLITEFIEGSELL 79 (170)
T ss_pred eeecCCcccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEEEecCCCccc
Confidence 467899999999999865 6789999875443233457889999999977666654322322 3458999999998775
Q ss_pred hhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC--CCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 619 SSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC--TLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 619 ~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
+.- . ....++.+++++|+.||+.. ...++|+|+||.||+++ ++.+++.|||.+..
T Consensus 80 ~~~------------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~ 136 (170)
T cd05151 80 TED------------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM 136 (170)
T ss_pred ccc------------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence 430 0 11245678999999999862 22369999999999999 67899999998753
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-12 Score=143.55 Aligned_cols=198 Identities=36% Similarity=0.503 Sum_probs=131.1
Q ss_pred EEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCC-CCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 146 ALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLS-VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 146 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
.|+++.|.+...+ ..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666663322 23445567777777777776 5666666664 7777777777776 45566677777777777777
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~ 304 (766)
+++ .+|...+.+++|+.|++++|+++ .+|..++.+..|++|.+++|++. .++..+.++.++..+.+.+|++... +
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~- 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P- 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c-
Confidence 776 55655556777777777777775 45555555556777777777533 4555666777777777777766431 1
Q ss_pred CccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCc
Q 004248 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPN 353 (766)
Q Consensus 305 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 353 (766)
.....+++++.|++++|.++...+ +..+.+|+.||+++|.++..+|.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 223566667777777777765544 67777788888888877766654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-12 Score=142.21 Aligned_cols=201 Identities=34% Similarity=0.525 Sum_probs=165.1
Q ss_pred EEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC-CCcEEEeecCcCCCCCCccccCCCCCCEEEccC
Q 004248 121 SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT-NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199 (766)
Q Consensus 121 ~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 199 (766)
.++++.|.+...+.... .++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+.++++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~--~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELL--ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhh--cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 57777777644444332 3678999999999998 5666677775 9999999999998 6777889999999999999
Q ss_pred CCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCC
Q 004248 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279 (766)
Q Consensus 200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 279 (766)
|+++ .+|...+.+++|+.|++++|+++ .+|..+..+..|++|.+++|.+. .++..+.++.++..|.+.+|++. .++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 9998 57777668999999999999998 67877777778999999999643 46677889999999999999986 347
Q ss_pred cccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccC
Q 004248 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLW 332 (766)
Q Consensus 280 ~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 332 (766)
..++.+++++.|++++|.++. ++. +..+.+|+.|++++|.++..+|....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred chhccccccceeccccccccc-ccc--ccccCccCEEeccCccccccchhhhc
Confidence 788899999999999999984 333 57889999999999999988776543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-12 Score=147.62 Aligned_cols=113 Identities=38% Similarity=0.617 Sum_probs=104.8
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEcc
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 246 (766)
.++.|+|++|.++|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCC-CCCCEEEccCCcCCccCC
Q 004248 247 NNSLASSIPAQLGDL-DSLVDLDLSMNSLSGSVP 279 (766)
Q Consensus 247 ~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~~p 279 (766)
+|+++|.+|..++.+ .++..+++.+|......|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999998764 577899999997654433
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=117.63 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=110.1
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCC--cccceeEEEecC--CcEEEEEeeC
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHAR--LVPLLGHCMERE--NEKFLVYKYM 612 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~~--~~~~lV~Ey~ 612 (766)
.+.++.|.++.||++...+|+.+++|....... ...++.+|+++++.+++.+ +.+++.+..... +..++||||+
T Consensus 3 ~~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i 82 (223)
T cd05154 3 VRQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV 82 (223)
T ss_pred ceecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence 467899999999999987778999999765433 2457899999999997644 566666543321 2568999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC-----------------------------------
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC----------------------------------- 657 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~----------------------------------- 657 (766)
+|+++.+.+.. ..++..++..++.+++++|.+||+..
T Consensus 83 ~G~~l~~~~~~--------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (223)
T cd05154 83 DGRVLRDRLLR--------PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEP 154 (223)
T ss_pred CCEecCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhccccc
Confidence 99888776531 13678888888999999999998521
Q ss_pred ------------------CCCeEecCCCCCCeeeCC--CCcEEeccchhhhh
Q 004248 658 ------------------TLPFVHRDVQASSILLDD--KFEVRLGSLSEVCA 689 (766)
Q Consensus 658 ------------------~~~iiHrDlKp~NILl~~--~~~~kl~DFG~a~~ 689 (766)
...++|+|++|.||+++. ++.+.|.||+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~ 206 (223)
T cd05154 155 PAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL 206 (223)
T ss_pred HHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence 235799999999999998 66789999998753
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-10 Score=110.71 Aligned_cols=134 Identities=12% Similarity=0.100 Sum_probs=96.0
Q ss_pred ceeecCCcceEEEEEEcC-------CcEEEEEEeecccc----------------------C-HHHH----HHHHHHHhh
Q 004248 540 NLIKNGHSGDLFRGILEG-------GIPVVIKRIDLQSV----------------------K-TEAY----LLELDFFSK 585 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~-------g~~vavK~l~~~~~----------------------~-~~~~----~~E~~~l~~ 585 (766)
..||.|.-+.||.|...+ +..+|||..+.... . .+.+ .+|.+.|.+
T Consensus 3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r 82 (197)
T cd05146 3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR 82 (197)
T ss_pred CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999998543 57999998743110 0 1123 379999999
Q ss_pred cCC--CCcccceeEEEecCCcEEEEEeeCCCCChhh-hhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhh-ccCCCCCe
Q 004248 586 VSH--ARLVPLLGHCMERENEKFLVYKYMPNGDLSS-SLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL-HHECTLPF 661 (766)
Q Consensus 586 l~H--~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~-~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~i 661 (766)
+.. -++-+.+++ ...++||||+.++.+.. .+.. ..++..+...+..+++.+|.+| |+. +|
T Consensus 83 l~~~Gv~vP~pi~~-----~~~~lvME~Ig~~~~~~~~Lkd--------~~~~~~~~~~i~~~i~~~l~~l~H~~---gl 146 (197)
T cd05146 83 MQKAGIPCPEVVVL-----KKHVLVMSFIGDDQVPAPKLKD--------AKLNDEEMKNAYYQVLSMMKQLYKEC---NL 146 (197)
T ss_pred HHHcCCCCCeEEEe-----cCCEEEEEEcCCCCccchhhhc--------cccCHHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 853 455555542 24589999998754432 2221 1244556677889999999999 665 99
Q ss_pred EecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 662 VHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 662 iHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||+|+++.||+++ ++.+.|+|||-+...
T Consensus 147 VHGDLs~~NIL~~-~~~v~iIDF~qav~~ 174 (197)
T cd05146 147 VHADLSEYNMLWH-DGKVWFIDVSQSVEP 174 (197)
T ss_pred ecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence 9999999999997 468999999987544
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown. |
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.7e-11 Score=129.29 Aligned_cols=195 Identities=21% Similarity=0.181 Sum_probs=144.9
Q ss_pred HHHhCCCCccceeecCCcceEEEEEE--cCCcEEEEEEeeccccC---HHHHHHHHHHHhhc-CCCCcccceeEEEecCC
Q 004248 530 LAATGDFSDANLIKNGHSGDLFRGIL--EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKV-SHARLVPLLGHCMEREN 603 (766)
Q Consensus 530 ~~~~~~~~~~~~ig~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 603 (766)
...+.+|..+..||.|.|+.||+... .++..+++|.+...... ...-..|+-+...+ .|.++++.+..+.+ ..
T Consensus 261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~-~r 339 (524)
T KOG0601|consen 261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ-LR 339 (524)
T ss_pred eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccc-cc
Confidence 34566899999999999999999873 56889999988654332 22224566666666 58888887775655 34
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEec
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLG 682 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~ 682 (766)
..|+=-|||+++++...+.-. ..++...++++..|++.++.++|+. .++|+|+||+||++..+ +.-+++
T Consensus 340 ~~~ip~e~~~~~s~~l~~~~~-------~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~ 409 (524)
T KOG0601|consen 340 QGYIPLEFCEGGSSSLRSVTS-------QMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLG 409 (524)
T ss_pred cccCchhhhcCcchhhhhHHH-------HhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhcc
Confidence 678999999999987665221 3478888899999999999999986 99999999999999886 888999
Q ss_pred cchhhhhcCCCC-ccceeeecc-cCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 683 SLSEVCAQGGDA-HQSRITRLL-RLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 683 DFG~a~~~~~~~-~~~~~t~~y-~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
|||.+....-.. ....+.+.| .++...+... +-.+.|++|||.-+.|.++|.+
T Consensus 410 ~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~---------~~~~~~~~sl~~~~~e~~~~~~ 464 (524)
T KOG0601|consen 410 DFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYP---------HLSKADIFSLGLSVDEAITGSP 464 (524)
T ss_pred ccccccccceecccccccccccccchhhccccc---------cccccccccccccccccccCcc
Confidence 999986432111 112234555 3444444333 3578999999999999999874
|
|
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-10 Score=117.53 Aligned_cols=151 Identities=18% Similarity=0.263 Sum_probs=110.2
Q ss_pred HHhhcCCCCcccceeEEEecC----CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC
Q 004248 582 FFSKVSHARLVPLLGHCMERE----NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657 (766)
Q Consensus 582 ~l~~l~H~niv~l~~~~~~~~----~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~ 657 (766)
-+-.+.|.|||+++.|+.+.. .+..++.|||+.|++.++|++.+. ....+....-.+++.||..||.|||+ |
T Consensus 120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~---~~~a~~~~~wkkw~tqIlsal~yLhs-~ 195 (458)
T KOG1266|consen 120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKK---NQKALFQKAWKKWCTQILSALSYLHS-C 195 (458)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHH---hhhhhhHHHHHHHHHHHHhhhhhhhc-c
Confidence 445567999999999775421 257899999999999999986543 22346777778899999999999998 7
Q ss_pred CCCeEecCCCCCCeeeCCCCcEEeccchhh------hhc-CCCCccceeeecccCCCCCCCCceeeeeeeeeccccccee
Q 004248 658 TLPFVHRDVQASSILLDDKFEVRLGSLSEV------CAQ-GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIY 730 (766)
Q Consensus 658 ~~~iiHrDlKp~NILl~~~~~~kl~DFG~a------~~~-~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~ 730 (766)
.|+|+|+++..+-|.+..+|-+|++--.-. +.. ........+-+.|.+||.-... . .+..+|||
T Consensus 196 ~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~t--n-------~~~a~dIy 266 (458)
T KOG1266|consen 196 DPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTT--N-------TTGASDIY 266 (458)
T ss_pred CCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCccc--c-------cccchhhh
Confidence 899999999999999999999998531110 000 0111122344567777642211 1 46789999
Q ss_pred cchHHHHHHhcCCCC
Q 004248 731 FHGNPLFSAIFNNHL 745 (766)
Q Consensus 731 s~Gvvl~elltG~~p 745 (766)
+||...+||..|..-
T Consensus 267 ~fgmcAlemailEiq 281 (458)
T KOG1266|consen 267 KFGMCALEMAILEIQ 281 (458)
T ss_pred hhhHHHHHHHHheec
Confidence 999999999998754
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-10 Score=122.00 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=117.9
Q ss_pred EEcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCC
Q 004248 554 ILEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQ 632 (766)
Q Consensus 554 ~~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~ 632 (766)
+..++.+|.|...+..... .+...+-++.|+.+|||||+++++. ++.++..|+|+|-+. -|..++.+
T Consensus 33 ~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t-~e~~~~~ylvTErV~--Pl~~~lk~--------- 100 (690)
T KOG1243|consen 33 RKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDT-TEEEGTLYLVTERVR--PLETVLKE--------- 100 (690)
T ss_pred eeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhh-hcccCceEEEeeccc--cHHHHHHH---------
Confidence 3667889999988655442 3456778899999999999999984 444678999999885 57777754
Q ss_pred CCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC---ccceeeecccCCCCC
Q 004248 633 SLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA---HQSRITRLLRLPQSS 709 (766)
Q Consensus 633 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~---~~~~~t~~y~aPe~~ 709 (766)
+......-.+.||+.||.|||++| +++|++|--.-|++++.|+.||++|-++....+.. .....-.-|..|+.+
T Consensus 101 -l~~~~v~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~ 177 (690)
T KOG1243|consen 101 -LGKEEVCLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI 177 (690)
T ss_pred -hHHHHHHHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc
Confidence 233444556789999999999875 89999999999999999999999998775432111 110001112333322
Q ss_pred CCCceeeeeeeeecccccceecchHHHHHHhcC
Q 004248 710 EQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN 742 (766)
Q Consensus 710 ~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG 742 (766)
.... -..|.|-|||+++|++.|
T Consensus 178 ~~s~-----------~s~D~~~Lg~li~el~ng 199 (690)
T KOG1243|consen 178 DPSE-----------WSIDSWGLGCLIEELFNG 199 (690)
T ss_pred Cccc-----------cchhhhhHHHHHHHHhCc
Confidence 2111 235999999999999999
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-11 Score=125.54 Aligned_cols=190 Identities=25% Similarity=0.247 Sum_probs=86.3
Q ss_pred CCCCCCEEEccCCCCCccC--CcccCCCCCCcEEEeecCcCCCCCCccc-cCCCCCCEEEccCCCCCCC-CCcccCCCCC
Q 004248 140 QLPTLQALDLRSCSISGVI--PFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNSLTGN-IPTSFGLLKN 215 (766)
Q Consensus 140 ~l~~L~~L~Ls~N~l~g~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~ 215 (766)
.|++++.||||.|-|.... -.....|++|+.|+|+.|++.-...+.. ..+++|+.|.|+.|.++-. +-.....+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 3566666666666554321 1223455566666666665542221111 1344555555555555421 1112233455
Q ss_pred CCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCCEEEccCCcCCcc-CCcccCCCCCCCEEEc
Q 004248 216 LSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI-PAQLGDLDSLVDLDLSMNSLSGS-VPSELRGLRSLQKFVI 293 (766)
Q Consensus 216 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~-~p~~l~~l~~L~~L~l 293 (766)
|+.|+|..|...+.-......+..|+.|||++|++-... -...+.++.|+.|+++.+.+... .|+. .
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~---------- 292 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-E---------- 292 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc-c----------
Confidence 555555555322122222233445555555555543211 02234455555555555544321 1111 0
Q ss_pred cCccCccccCCCccCCCCcccEEEccCCCCCCCC-CcccCCCCCCCEEEccCCCCCC
Q 004248 294 GNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPP-PDVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 294 s~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g 349 (766)
.........+|+.|+++.|++.... -..+..+++|+.|....|.|+-
T Consensus 293 ---------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 293 ---------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ---------chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 0000123345666666666653211 1234456777888888888763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-11 Score=124.56 Aligned_cols=186 Identities=30% Similarity=0.348 Sum_probs=132.0
Q ss_pred hccCCCCCEEecCCCCCCCCCc-hhhhhCCCCCCEEEccCCCCCccCCccc-CCCCCCcEEEeecCcCCCC-CCccccCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIP-DWLGQQLPTLQALDLRSCSISGVIPFSL-GNLTNLTSLYLSDNGLTGT-IPSSLGQL 189 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip-~~~~~~l~~L~~L~Ls~N~l~g~~p~~l-~~l~~L~~L~Ls~N~l~~~-~p~~l~~L 189 (766)
...+++++.||||+|.|..--| -.+..+|++|+.|+|+.|.+.-...... ..+++|+.|.|+.|.|+-. +-..+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4578999999999998764322 2344569999999999999875444332 3578999999999999832 23345678
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCC--CCCCCCCCccEEEccCCCCCCC-Cccc-----cCCC
Q 004248 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP--PGLGTLSKLQYLNVSNNSLASS-IPAQ-----LGDL 261 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l 261 (766)
++|+.|+|..|...+.-......+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.+... .|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 89999999999644444445667889999999999987 344 4578899999999999988753 2332 3456
Q ss_pred CCCCEEEccCCcCCcc-CCcccCCCCCCCEEEccCccCc
Q 004248 262 DSLVDLDLSMNSLSGS-VPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 262 ~~L~~L~Ls~N~l~g~-~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
++|++|+++.|++..- .-..+..+++|+.|.+..|.++
T Consensus 301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7888888888887421 1122334455555555555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-11 Score=117.52 Aligned_cols=201 Identities=22% Similarity=0.261 Sum_probs=122.6
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEcc-CCCCCCCCCcccCCCCCCCEE
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS-RNSLTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L 219 (766)
+.+|..+.+|.+.-..+. .....-+.|+++...+..++ ..|.-+ -...+..+.-+ ..-.+|..-..+...+.|+.|
T Consensus 213 f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~-~~~~l~-pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQ-DVPSLL-PETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hhhhheeeeeccchhhee-ceeecCchhheeeeeccccc-cccccc-chhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 456666666666532211 11122355666666655443 122111 11111111111 112234444445556677788
Q ss_pred eccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc
Q 004248 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 220 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
|||+|.++ .+.++..-+++++.|++|+|.+... ..+..+++|+.||||+|.++ .+..+-..+.+++.|.|+.|.+.
T Consensus 290 DLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 290 DLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred cccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh
Confidence 88888777 5666666777888888888877632 23667778888888888776 34445556777888888888764
Q ss_pred cccCCCccCCCCcccEEEccCCCCCCCC-CcccCCCCCCCEEEccCCCCCCCC
Q 004248 300 GNLSVNLFPTVSQLQIIVLRQNGFTGPP-PDVLWSMPQLRLLDISRNNFTGPL 351 (766)
Q Consensus 300 g~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~ 351 (766)
. ++ -...+.+|..||+++|++...- -..++++|.|++|.|.+|.+.+..
T Consensus 366 ~-LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 366 T-LS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred h-hh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 2 11 1356678888999999886432 245889999999999999998643
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-11 Score=117.55 Aligned_cols=207 Identities=21% Similarity=0.208 Sum_probs=135.7
Q ss_pred CCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccC---CcCCCCCCCCC
Q 004248 158 IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS---NYLTGSIPPGL 234 (766)
Q Consensus 158 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~---N~l~~~~p~~l 234 (766)
+|-.+.-+.+|+.+.+|.+.-. .+-+-...-+.|+++...+.-++ ..|. +--.+.+. |.+. .-.+|..-..+
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~--D~~~~E~~t~~G~~~~~~ 280 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILA--DPSGSEPSTSNGSALVSA 280 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-cccc-ccchhhhc--CccCCCCCccCCceEEec
Confidence 3444555667777777776533 12222223356778777655443 1221 11112222 2221 12234443445
Q ss_pred CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCccc
Q 004248 235 GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQ 314 (766)
Q Consensus 235 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~ 314 (766)
.....|+.||||+|.++ .+.++..-++.++.|++|+|.+.. + ..+..+++|+.||||+|.++... . +-..+-+++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~-G-wh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECV-G-WHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhh-h-hHhhhcCEe
Confidence 55678999999999997 567778888999999999999973 3 34889999999999999987322 1 224677899
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCC
Q 004248 315 IIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGL 376 (766)
Q Consensus 315 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~ 376 (766)
.|.|++|.+... +.++.+-+|..||+++|++...-.-...+.++-|..+.|-+|.+.+..
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999999988532 346677889999999999973222223455567788888999887643
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-10 Score=133.34 Aligned_cols=199 Identities=17% Similarity=0.110 Sum_probs=140.1
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+++...+-+-+|+++.++-+. ...|...++|...... ...++.+++-.+.-..+||-+++...- +......+||
T Consensus 804 d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s-~~~rsP~~L~ 882 (1205)
T KOG0606|consen 804 DGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPS-FPCRSPLPLV 882 (1205)
T ss_pred ccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCC-CCCCCCcchh
Confidence 456666788899999999887 3335444444432211 112334444444444566777765543 1224578999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
++|..+|+|...++..+. .+.+....+...+.++++|||.. .++|||+||.|+++..++..+++|||...
T Consensus 883 ~~~~~~~~~~Skl~~~~~-------~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~ 952 (1205)
T KOG0606|consen 883 GHYLNGGDLPSKLHNSGC-------LSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLS 952 (1205)
T ss_pred hHHhccCCchhhhhcCCC-------cccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCcccccc
Confidence 999999999999987653 33333445566778899999986 68999999999999999999999998433
Q ss_pred hcC------------------------------C----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchH
Q 004248 689 AQG------------------------------G----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGN 734 (766)
Q Consensus 689 ~~~------------------------------~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gv 734 (766)
..+ . ......+|+-|.+||...+..+|+ .+|+|+.|+
T Consensus 953 ~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs---------~ad~~~~g~ 1023 (1205)
T KOG0606|consen 953 KVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGS---------AADWWSSGV 1023 (1205)
T ss_pred ccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCC---------cchhhhhhh
Confidence 210 0 012245688899999888777654 669999999
Q ss_pred HHHHHhcCCCCCCCCccc
Q 004248 735 PLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 735 vl~elltG~~p~~~~~~~ 752 (766)
+++|.++|.+||......
T Consensus 1024 ~l~e~l~g~pp~na~tpq 1041 (1205)
T KOG0606|consen 1024 CLFEVLTGIPPFNAETPQ 1041 (1205)
T ss_pred hhhhhhcCCCCCCCcchh
Confidence 999999999999655443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-10 Score=108.51 Aligned_cols=109 Identities=32% Similarity=0.435 Sum_probs=29.8
Q ss_pred ccCCCCCCEEEccCCCCCCCCCcccC-CCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCcccc-CCCCC
Q 004248 186 LGQLSVLSVLDLSRNSLTGNIPTSFG-LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL-GDLDS 263 (766)
Q Consensus 186 l~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~ 263 (766)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|||++|.++. + +.+..+++|++|++++|+++. ++..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 3445567777777777763 2 2444 46677777777777763 3 246667777777777777764 33233 24667
Q ss_pred CCEEEccCCcCCccC-CcccCCCCCCCEEEccCccCc
Q 004248 264 LVDLDLSMNSLSGSV-PSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 264 L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~ls~N~l~ 299 (766)
|++|+|++|++...- -..+..+++|+.|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777765321 123344555555555555443
|
|
| >COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.9e-09 Score=98.16 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=93.9
Q ss_pred ceeecCCcceEEEEEEcCCcEEEEEEe-ecccc--------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 540 NLIKNGHSGDLFRGILEGGIPVVIKRI-DLQSV--------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g~~vavK~l-~~~~~--------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
..+++|+-+.+|.+.+.+ ..+++|.- ++.-. ..++..+|++++.+++---|-.-.=+.++ .+...++||
T Consensus 2 ~~i~~GAEa~i~~~~~~g-~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD-~~~~~I~me 79 (204)
T COG3642 2 DLIKQGAEAIIYLTDFLG-LPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVD-PDNGLIVME 79 (204)
T ss_pred chhhCCcceeEEeeeccC-cceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCEEEEE
Confidence 357899999999997643 34666643 22111 13567889999999864433222222333 456789999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|++|-.|.+.+... +..++..|-+-+.-||.. +|||+|+.++||.+..+. +.+.|||++..
T Consensus 80 ~I~G~~lkd~l~~~--------------~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~ 140 (204)
T COG3642 80 YIEGELLKDALEEA--------------RPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEF 140 (204)
T ss_pred EeCChhHHHHHHhc--------------chHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCcccc
Confidence 99998888888542 245666777777889998 999999999999998765 99999999864
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-10 Score=109.28 Aligned_cols=101 Identities=34% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCC-CCCCCccEEEccCCCCCCCC-ccccCCCCCCCE
Q 004248 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSI-PAQLGDLDSLVD 266 (766)
Q Consensus 189 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~ 266 (766)
+.+|+.|||++|.++. ++ .+..+++|+.|++++|+++. +++.+ ..+++|+.|+|++|++...- -..+..+++|++
T Consensus 41 l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 4444444444444442 21 23444444555555554442 22222 13444555555555443211 123445566666
Q ss_pred EEccCCcCCccCC---cccCCCCCCCEEE
Q 004248 267 LDLSMNSLSGSVP---SELRGLRSLQKFV 292 (766)
Q Consensus 267 L~Ls~N~l~g~~p---~~l~~l~~L~~L~ 292 (766)
|+|.+|.++..-- ..+..+++|+.||
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666666653210 1234455555554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-10 Score=128.42 Aligned_cols=242 Identities=28% Similarity=0.293 Sum_probs=144.4
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+..++.+++..|.+.. +-..+..+++|+.|+|.+|++.. +...+..+++|++|+|++|+|+... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 5566667777777763 23346677778888888887774 3333666777888888888877543 355666677888
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
+++|.++.. ..+..+++|+.+++++|.+...-+ . ...+.+|+.+++.+|.+.. ...+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 888877632 345567778888888887765433 1 4566777777788777652 223334444555566777665
Q ss_pred cccCCCccCCCC--cccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCC-
Q 004248 300 GNLSVNLFPTVS--QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGL- 376 (766)
Q Consensus 300 g~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~- 376 (766)
-.-+. ..+. +|+.+++++|.+.... ..+..+..+..||+++|++...-. ......+..+..+.|.+....
T Consensus 222 ~~~~l---~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 222 KLEGL---NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred eccCc---ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc---ccccchHHHhccCcchhcchhh
Confidence 22111 1122 2677788888776432 455667778888888887763221 122233444555555543210
Q ss_pred ------CcCCCCCCEEeccCCcCccccC
Q 004248 377 ------TPVLGRFRLVDLSGNYFEGRVP 398 (766)
Q Consensus 377 ------~~~l~~l~~ldLs~N~l~g~~p 398 (766)
-.....++.+.+..|......+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhccccccccccccccccccCccccccc
Confidence 1123445556666666554433
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=118.26 Aligned_cols=190 Identities=17% Similarity=0.137 Sum_probs=142.6
Q ss_pred CCccceeec--CCcceEEEEEE---cCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEE
Q 004248 536 FSDANLIKN--GHSGDLFRGIL---EGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVS-HARLVPLLGHCMERENEKF 606 (766)
Q Consensus 536 ~~~~~~ig~--G~~g~Vy~~~~---~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~ 606 (766)
|.....+|. |.+|.||++.. .++..+|+|+-+..- ....+=.+|+..-.+++ |+|.|+.+..+.+ .+..+
T Consensus 116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~-~~~lf 194 (524)
T KOG0601|consen 116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG-SGILF 194 (524)
T ss_pred cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc-CCcce
Confidence 556678999 99999999985 568899999843211 11233456777667774 9999997775544 56789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHH----HhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEe
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE----GLSYLHHECTLPFVHRDVQASSILLDDK-FEVRL 681 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~----gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl 681 (766)
+-+|++. .+|.++.+.... .++....+.+..+..+ |+.++|.. .|+|-|+||.||...++ ...++
T Consensus 195 iqtE~~~-~sl~~~~~~~~~------~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~ 264 (524)
T KOG0601|consen 195 IQTELCG-ESLQSYCHTPCN------FLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKL 264 (524)
T ss_pred eeecccc-chhHHhhhcccc------cCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeec
Confidence 9999996 688888765322 2555666667777777 99999997 99999999999999998 88999
Q ss_pred ccchhhhhcCCCC-cc-------ceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 682 GSLSEVCAQGGDA-HQ-------SRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 682 ~DFG~a~~~~~~~-~~-------~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+|||+...+++.. .. ..+...|++||...+. ++.+.|+||+|.|.+|..+|-.+.
T Consensus 265 ~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l----------~~~~~di~sl~ev~l~~~l~~~~~ 327 (524)
T KOG0601|consen 265 TDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGL----------ATFASDIFSLGEVILEAILGSHLP 327 (524)
T ss_pred CCcceeEEccCCccccceeeeecCCCCceEeChhhhccc----------cchHhhhcchhhhhHhhHhhcccc
Confidence 9999988764321 11 1244568999987543 468899999999999999987665
|
|
| >KOG3087 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=94.43 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=99.4
Q ss_pred ccceeecCCcceEEEEEEcCCcEEEEEEe-ecccc--------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 538 DANLIKNGHSGDLFRGILEGGIPVVIKRI-DLQSV--------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~~g~~vavK~l-~~~~~--------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
...++-+|+-+.|+++..+ |+...||.- .+... .+++..+|++++.+++---|.--.-++.+ ...-.++
T Consensus 11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D-~~~~~i~ 88 (229)
T KOG3087|consen 11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFID-TYGGQIY 88 (229)
T ss_pred cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe-cCCCeEE
Confidence 4678999999999999876 556666643 22211 14578899999999864333222222333 2345799
Q ss_pred EeeCCC-CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc---EEeccc
Q 004248 609 YKYMPN-GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE---VRLGSL 684 (766)
Q Consensus 609 ~Ey~~~-GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~---~kl~DF 684 (766)
|||+++ -++.+++...... ...-+....++..|-+.+.-||.. .|||+||..+||++.+++. +.+.||
T Consensus 89 ME~~~g~~~vk~~i~~~~~~-----~~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdf 160 (229)
T KOG3087|consen 89 MEFIDGASTVKDFILSTMED-----ESEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDF 160 (229)
T ss_pred EEeccchhHHHHHHHHHccC-----cccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEee
Confidence 999986 3788888654321 122223367788888899999998 9999999999999986654 579999
Q ss_pred hhhhh
Q 004248 685 SEVCA 689 (766)
Q Consensus 685 G~a~~ 689 (766)
|++..
T Consensus 161 gls~~ 165 (229)
T KOG3087|consen 161 GLSSV 165 (229)
T ss_pred cchhc
Confidence 99754
|
|
| >PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.1e-08 Score=99.88 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=99.1
Q ss_pred ceeecCCcceEEEEEEcCCcEEEEEEeecccc------------CHHHHHHHHHHHhhcCCCC--cccceeEEEec----
Q 004248 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV------------KTEAYLLELDFFSKVSHAR--LVPLLGHCMER---- 601 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~------------~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~---- 601 (766)
+.+-+-....|++... +|+.+.||+...... ....+.+|.+.+.++.... +.+.+++....
T Consensus 28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~ 106 (268)
T PRK15123 28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA 106 (268)
T ss_pred cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence 4444444455777655 567899997633220 1124889999998884333 33445444321
Q ss_pred CCcEEEEEeeCCCC-ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-----
Q 004248 602 ENEKFLVYKYMPNG-DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD----- 675 (766)
Q Consensus 602 ~~~~~lV~Ey~~~G-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~----- 675 (766)
....++|+|++++- +|.+++..... ...+...+..++.+++..+.-||.. +|+|+|++++|||++.
T Consensus 107 ~~~s~LVte~l~~~~sL~~~~~~~~~-----~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~ 178 (268)
T PRK15123 107 TRTSFIITEDLAPTISLEDYCADWAT-----NPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGR 178 (268)
T ss_pred cceeEEEEeeCCCCccHHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCC
Confidence 12478999999975 79988853211 1245667778999999999999998 9999999999999985
Q ss_pred --CCcEEeccchhhhh
Q 004248 676 --KFEVRLGSLSEVCA 689 (766)
Q Consensus 676 --~~~~kl~DFG~a~~ 689 (766)
++.+.++||+.++.
T Consensus 179 ~~~~~~~LIDl~r~~~ 194 (268)
T PRK15123 179 EEDLKLSVIDLHRAQI 194 (268)
T ss_pred CCCceEEEEECCcccc
Confidence 46799999998753
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-10 Score=115.20 Aligned_cols=239 Identities=23% Similarity=0.305 Sum_probs=134.1
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCC----Cchhhh------hCCCCCCEEEccCCCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGS----IPDWLG------QQLPTLQALDLRSCSIS 155 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~----ip~~~~------~~l~~L~~L~Ls~N~l~ 155 (766)
..++.|+|+|+.. |.--.......+.+.++|+..++|+. ++|. +|+.+- ...++|++||||.|-|.
T Consensus 30 ~s~~~l~lsgnt~---G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGNTF---GTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred CceEEEeccCCch---hHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3578999998532 22111222345777888998888864 5554 343221 13678999999999886
Q ss_pred ccCCcc----cCCCCCCcEEEeecCcCCCCC-------------CccccCCCCCCEEEccCCCCCCC----CCcccCCCC
Q 004248 156 GVIPFS----LGNLTNLTSLYLSDNGLTGTI-------------PSSLGQLSVLSVLDLSRNSLTGN----IPTSFGLLK 214 (766)
Q Consensus 156 g~~p~~----l~~l~~L~~L~Ls~N~l~~~~-------------p~~l~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~ 214 (766)
-.-+.. +..++.|++|+|.+|.+.-.- ..-.+.-+.|+++...+|++... +...|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 443333 456788899999888875211 11233445677777777776421 112344556
Q ss_pred CCCEEeccCCcCCCC----CCCCCCCCCCccEEEccCCCCCCC----CccccCCCCCCCEEEccCCcCCccCCcccCCCC
Q 004248 215 NLSSLDISSNYLTGS----IPPGLGTLSKLQYLNVSNNSLASS----IPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLR 286 (766)
Q Consensus 215 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 286 (766)
.|+.+.++.|.+... +...+..++.|+.|||.+|-|+.. +...+..+++|++|++++|.+...-...|.
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~--- 262 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV--- 262 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH---
Confidence 667777776665311 112345566666666666666532 222344455666666666655432111110
Q ss_pred CCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCC----CCcccCCCCCCCEEEccCCCCC
Q 004248 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGP----PPDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 287 ~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
..+-...++|+.|.|.+|.++.. +...+...+.|..|+|+.|.+.
T Consensus 263 -----------------~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 -----------------DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred -----------------HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 00001234566666666666532 2233445778888888888883
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-09 Score=120.18 Aligned_cols=246 Identities=27% Similarity=0.287 Sum_probs=149.0
Q ss_pred cCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 115 ~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
.++.+..+++..|.+.- +-..+. .+.+|+.|+|..|.|.... ..+..+++|++|+|++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~-~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLS-KLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccc-cccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhh
Confidence 44555555666665532 111122 3778888888888887543 22677888888888888887543 3566777888
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCC-CCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCc
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 273 (766)
|++++|.++. ...+..+++|+.+++++|.+...-+ . ...+.+|+.+++.+|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 8888888873 2355668888888888888874333 1 46777888888888887532 233344455555777777
Q ss_pred CCccCCcccCCCC--CCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCC
Q 004248 274 LSGSVPSELRGLR--SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351 (766)
Q Consensus 274 l~g~~p~~l~~l~--~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 351 (766)
++-.-+ +..+. .|+.+++++|.+.-. + .....+..+..|++.+|++...- .+...+.+..+.+..|.+....
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRS-P-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccc-c-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence 763222 12222 267777777777521 1 12355667777788777776432 2344556666777777765221
Q ss_pred ---CcccccCCCCCcEEEccCCcCccCC
Q 004248 352 ---PNSRSNVNTSTVELNISQNMFYGGL 376 (766)
Q Consensus 352 ---p~~~~~~~~~l~~L~ls~N~l~g~~ 376 (766)
..........+....+..|......
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hhhccccccccccccccccccCcccccc
Confidence 1111223345555666666555433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.2e-09 Score=122.87 Aligned_cols=248 Identities=25% Similarity=0.265 Sum_probs=121.6
Q ss_pred CCCEEecCCCCC-CCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 118 HLASFNASRFLL-PGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 118 ~L~~L~ls~n~l-~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
.|++|-+..|.. ...++..++..++.|++|||++|.=-+.+|..+++|-+|++|+|++..++ .+|..+.+|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 455555555541 34455555555666666666666655566666666666666666666666 5666666666666666
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCC--CCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCC----EEEcc
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLT--GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLV----DLDLS 270 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls 270 (766)
+..+.....+|.....|++|++|.+..-... ...-..+.++..|+.|....... .+-..+..++.|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 6666554445555555666666666543311 11112223334444333322211 0001111222222 12222
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCccCccccCCC-------c-cCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEc
Q 004248 271 MNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN-------L-FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342 (766)
Q Consensus 271 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~-------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 342 (766)
.+.. ...+..+..+.+|+.|.+.+..++...... . |.++.++...+.... ..+.+..-.++|+.|.+
T Consensus 703 ~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~----r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 703 GCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML----RDLTWLLFAPHLTSLSL 777 (889)
T ss_pred cccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc----cccchhhccCcccEEEE
Confidence 2222 134556677888888888877765221110 0 111111111111111 12334445688999999
Q ss_pred cCCCCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004248 343 SRNNFTGPLPNSRSNVNTSTVELNISQNMFYG 374 (766)
Q Consensus 343 s~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g 374 (766)
........+.... .....+..+-+..+.+.+
T Consensus 778 ~~~~~~e~~i~~~-k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 778 VSCRLLEDIIPKL-KALLELKELILPFNKLEG 808 (889)
T ss_pred ecccccccCCCHH-HHhhhcccEEeccccccc
Confidence 8776654433221 222333334444444444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-09 Score=81.98 Aligned_cols=59 Identities=41% Similarity=0.579 Sum_probs=30.6
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCC
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS 201 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 201 (766)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444455555555555555554
|
... |
| >PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-08 Score=93.82 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=81.1
Q ss_pred eEEEEEEcCCcEEEEEEeecccc----------------------C-----HHHHHHHHHHHhhcCCCC--cccceeEEE
Q 004248 549 DLFRGILEGGIPVVIKRIDLQSV----------------------K-----TEAYLLELDFFSKVSHAR--LVPLLGHCM 599 (766)
Q Consensus 549 ~Vy~~~~~~g~~vavK~l~~~~~----------------------~-----~~~~~~E~~~l~~l~H~n--iv~l~~~~~ 599 (766)
.||.|...+|..||||.-+.... . .....+|.+.|.++..-. +-+.++ +
T Consensus 1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~-~- 78 (188)
T PF01163_consen 1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYD-Y- 78 (188)
T ss_dssp EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEE-E-
T ss_pred CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEE-E-
Confidence 48999999999999998753210 0 124678999999997664 445553 2
Q ss_pred ecCCcEEEEEeeCC--CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhh-ccCCCCCeEecCCCCCCeeeCCC
Q 004248 600 ERENEKFLVYKYMP--NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL-HHECTLPFVHRDVQASSILLDDK 676 (766)
Q Consensus 600 ~~~~~~~lV~Ey~~--~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~iiHrDlKp~NILl~~~ 676 (766)
. ...+||||++ |..+..+.... ++......++.+++..+..+ |.. +|||+|+.+.||+++++
T Consensus 79 ~---~~~ivME~I~~~G~~~~~l~~~~---------~~~~~~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~ 143 (188)
T PF01163_consen 79 N---RNVIVMEYIGEDGVPLPRLKDVD---------LSPEEPKELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG 143 (188)
T ss_dssp E---TTEEEEE--EETTEEGGCHHHCG---------GGGSTHHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT
T ss_pred e---CCEEEEEecCCCccchhhHHhcc---------ccchhHHHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc
Confidence 2 2489999999 54454433211 11334456777888866665 565 99999999999999987
Q ss_pred CcEEeccchhhhhc
Q 004248 677 FEVRLGSLSEVCAQ 690 (766)
Q Consensus 677 ~~~kl~DFG~a~~~ 690 (766)
.+.|+|||-+...
T Consensus 144 -~~~iIDf~qav~~ 156 (188)
T PF01163_consen 144 -KVYIIDFGQAVDS 156 (188)
T ss_dssp -CEEE--GTTEEET
T ss_pred -eEEEEecCcceec
Confidence 9999999987544
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A. |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.7e-09 Score=81.39 Aligned_cols=59 Identities=49% Similarity=0.594 Sum_probs=29.5
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCc
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 225 (766)
+|++|+|++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333444555555555555555554444445555555555555544
|
... |
| >KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=101.37 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=125.9
Q ss_pred ceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEe---cCCcEEEEEeeCCC-CChhhhh
Q 004248 548 GDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCME---RENEKFLVYKYMPN-GDLSSSL 621 (766)
Q Consensus 548 g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~---~~~~~~lV~Ey~~~-GsL~~~l 621 (766)
.+.||+. ..||..++.||+.-.+.. ......-++.++++.|+|||++.+++.. .+..+.+||+|.|+ ++|.++-
T Consensus 290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~ 369 (655)
T KOG3741|consen 290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY 369 (655)
T ss_pred ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence 5689998 578999999999433222 2233445778999999999999987652 13468999999996 5787765
Q ss_pred hccC-CC-------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 622 YRKT-NT-------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 622 ~~~~-~~-------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
.... .. .......+++..+.|+.|++.||.++|+. +..-+-+.+++||++.+.+++|+.-|+......+
T Consensus 370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d 446 (655)
T KOG3741|consen 370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQED 446 (655)
T ss_pred ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeecCC
Confidence 3221 11 22334678899999999999999999997 8888999999999999999999877765544332
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
.. |.++. -.+-|.=.||.+++.|.||..
T Consensus 447 ~~-----------~~le~------------~Qq~D~~~lG~ll~aLAt~~~ 474 (655)
T KOG3741|consen 447 PT-----------EPLES------------QQQNDLRDLGLLLLALATGTE 474 (655)
T ss_pred CC-----------cchhH------------HhhhhHHHHHHHHHHHhhccc
Confidence 21 11111 134577789999999999953
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-08 Score=121.37 Aligned_cols=126 Identities=36% Similarity=0.455 Sum_probs=64.4
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCc--CCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG--LTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
..+...+-+|.+. .++... ..++|++|-+..|. +....+..|..++.|++|||++|.=-+.+|.++++|-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4445555555443 122221 12245555555554 3222222344555666666665554455566666666666666
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccC
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSM 271 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 271 (766)
|++..+. .+|.++++|.+|.+|++..+.-...+|.....+++|++|.+..
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 6665555 4555666666666666655554444444444455666655543
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-08 Score=115.85 Aligned_cols=90 Identities=8% Similarity=-0.166 Sum_probs=65.5
Q ss_pred HhhhhccCCCCCeEecCCCCC-CeeeCCCCcEEeccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeee
Q 004248 649 GLSYLHHECTLPFVHRDVQAS-SILLDDKFEVRLGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFI 722 (766)
Q Consensus 649 gL~yLH~~~~~~iiHrDlKp~-NILl~~~~~~kl~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~ 722 (766)
+..|.|.. ..-.|++.+|. |++++.+...++.|||.++.... ......||+.|+|||.+.+..
T Consensus 488 ~~~~~~~~--~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~--------- 556 (669)
T cd05610 488 GSQSGSYP--AITPTQKPRPHGNLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKP--------- 556 (669)
T ss_pred ccccCCCc--ccCCCCCCCCCCceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCC---------
Confidence 34455532 22345666666 66777777788999998876521 233457899999999886544
Q ss_pred cccccceecchHHHHHHhcCCCCCCCC
Q 004248 723 IFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 723 ~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++.++|||||||++|||+||+.||...
T Consensus 557 ~~~~~DiwSlG~il~ElltG~~pf~~~ 583 (669)
T cd05610 557 HGPAVDWWALGVCLFEFLTGIPPFNDE 583 (669)
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 367999999999999999999999543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-09 Score=117.89 Aligned_cols=126 Identities=29% Similarity=0.360 Sum_probs=68.7
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCCEEEc
Q 004248 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPA-QLGDLDSLVDLDL 269 (766)
Q Consensus 191 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L 269 (766)
.|.+.+.++|.+. .+..++.-++.|+.|||++|+++.. +.+..|++|++|||++|.+.. +|. ....+. |..|.|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence 4555566666665 4455555566666666666666532 245566666666666666653 232 122222 666666
Q ss_pred cCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCC
Q 004248 270 SMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGF 323 (766)
Q Consensus 270 s~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l 323 (766)
++|.++.. ..+.+|++|+.||++.|-|++.-....+..+..|+.|.|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66665522 23455666666666666665433222233455556666666654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-08 Score=102.82 Aligned_cols=188 Identities=19% Similarity=0.228 Sum_probs=132.5
Q ss_pred hhhccCCCCCEEecCCCCCCCCCchhhh---hCCCCCCEEEccCCCCCcc-------------CCcccCCCCCCcEEEee
Q 004248 111 DALVNLTHLASFNASRFLLPGSIPDWLG---QQLPTLQALDLRSCSISGV-------------IPFSLGNLTNLTSLYLS 174 (766)
Q Consensus 111 ~~l~~l~~L~~L~ls~n~l~g~ip~~~~---~~l~~L~~L~Ls~N~l~g~-------------~p~~l~~l~~L~~L~Ls 174 (766)
..+...++|+.+|||+|.|.-.-++.+. +++..|+.|.|.+|.+.-. .....++-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3566677999999999999766555432 3488999999999998521 11234556789999999
Q ss_pred cCcCCCC----CCccccCCCCCCEEEccCCCCCCC----CCcccCCCCCCCEEeccCCcCCCC----CCCCCCCCCCccE
Q 004248 175 DNGLTGT----IPSSLGQLSVLSVLDLSRNSLTGN----IPTSFGLLKNLSSLDISSNYLTGS----IPPGLGTLSKLQY 242 (766)
Q Consensus 175 ~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~ 242 (766)
+|++... +...|...+.|+.+.++.|.+.-. +-..|..+++|+.|||.+|-|+-. +...+..++.|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 9998632 233566778999999999987521 223567899999999999998732 3455677889999
Q ss_pred EEccCCCCCCCCcccc-----CCCCCCCEEEccCCcCCcc----CCcccCCCCCCCEEEccCccC
Q 004248 243 LNVSNNSLASSIPAQL-----GDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQKFVIGNNFL 298 (766)
Q Consensus 243 L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~ls~N~l 298 (766)
|++++|.+...-...+ ...++|+.|.|.+|.++.. +-..+...+.|..|+|+.|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999999975432222 2367888888888887632 112233345555555555555
|
|
| >COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.2e-07 Score=89.56 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=91.0
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeecccc-----------------------CHHHHHHHHHHHhhcCCC--Cc
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV-----------------------KTEAYLLELDFFSKVSHA--RL 591 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~-----------------------~~~~~~~E~~~l~~l~H~--ni 591 (766)
...+.||.|.-+.||.|..+.|.++|||.=+.... .+....+|.++|.++... .|
T Consensus 94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V 173 (304)
T COG0478 94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV 173 (304)
T ss_pred hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence 34589999999999999999999999996432111 022467899999999654 56
Q ss_pred ccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHH-HHHHHHHHHhhhhccCCCCCeEecCCCCCC
Q 004248 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRL-KIAIGAAEGLSYLHHECTLPFVHRDVQASS 670 (766)
Q Consensus 592 v~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~-~i~~~ia~gL~yLH~~~~~~iiHrDlKp~N 670 (766)
-+-++ -+...+||||++|-.|...=-. .-..+... .|+.++..+. + . +|||+|+.+=|
T Consensus 174 P~P~~-----~nRHaVvMe~ieG~eL~~~r~~---------~en~~~il~~il~~~~~~~---~-~---GiVHGDlSefN 232 (304)
T COG0478 174 PKPIA-----WNRHAVVMEYIEGVELYRLRLD---------VENPDEILDKILEEVRKAY---R-R---GIVHGDLSEFN 232 (304)
T ss_pred CCccc-----cccceeeeehcccceeecccCc---------ccCHHHHHHHHHHHHHHHH---H-c---CccccCCchhe
Confidence 66665 2356899999998555432100 01112222 2333333332 3 3 89999999999
Q ss_pred eeeCCCCcEEeccchhhhh
Q 004248 671 ILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 671 ILl~~~~~~kl~DFG~a~~ 689 (766)
|+++++|.+.+.||--+..
T Consensus 233 IlV~~dg~~~vIDwPQ~v~ 251 (304)
T COG0478 233 ILVTEDGDIVVIDWPQAVP 251 (304)
T ss_pred EEEecCCCEEEEeCccccc
Confidence 9999999999999976543
|
|
| >PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=85.69 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhcCCC--CcccceeEEEecC---CcEEEEEeeCCCC-ChhhhhhccCCCCCcCCCCCHHHHHHHHHHH
Q 004248 573 TEAYLLELDFFSKVSHA--RLVPLLGHCMERE---NEKFLVYKYMPNG-DLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646 (766)
Q Consensus 573 ~~~~~~E~~~l~~l~H~--niv~l~~~~~~~~---~~~~lV~Ey~~~G-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i 646 (766)
..+..+|...+.+++.. .+.+.+++..... ...++|+|++++- +|.+++..... .+...+..++.++
T Consensus 55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~-------~~~~~~~~ll~~l 127 (206)
T PF06293_consen 55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ-------LDPSQRRELLRAL 127 (206)
T ss_pred chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc-------cchhhHHHHHHHH
Confidence 45688899888888533 3445555544321 1358999999974 79998865321 4566778899999
Q ss_pred HHHhhhhccCCCCCeEecCCCCCCeeeCCCC---cEEeccchhhhhc
Q 004248 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKF---EVRLGSLSEVCAQ 690 (766)
Q Consensus 647 a~gL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl~DFG~a~~~ 690 (766)
++.++-||+. +|+|+|+++.|||++.+. ++.+.||+-++..
T Consensus 128 ~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~ 171 (206)
T PF06293_consen 128 ARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR 171 (206)
T ss_pred HHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence 9999999998 999999999999999887 7999999987643
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.1e-09 Score=115.51 Aligned_cols=126 Identities=36% Similarity=0.400 Sum_probs=75.2
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCC-CCCCCCccEEEc
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNV 245 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L 245 (766)
.|.+.+.++|.+. .+..++.-++.|+.|||++|+++.. ..+..|++|++|||++|.+. .+|.. ...+ +|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 3555666666665 4555666666777777777777632 25666777777777777776 34432 1222 3777777
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCCccCC-cccCCCCCCCEEEccCccCc
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP-SELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~ 299 (766)
++|.++.. ..+.+|.+|+.||+++|-+.+.-- ..+..|..|+.|+|.+|.+.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77766532 235567777777777776654211 22344556666777777653
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.4e-07 Score=65.21 Aligned_cols=36 Identities=33% Similarity=0.798 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCC-C---CCCCCCC--CCCCCCccceeec
Q 004248 48 RTELAALFELRSSLGL-R---RRDWPRK--VDPCLVWNGVRCQ 84 (766)
Q Consensus 48 ~~~~~aLl~~k~~l~~-~---~~~W~~~--~~~C~~W~gv~C~ 84 (766)
++|++||++||+++.. . +.+|+.. .+|| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-eeccEEeC
Confidence 5799999999999974 3 5899876 4655 89999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172 | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.2e-06 Score=83.54 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=82.5
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCc--ccceeEEEecCCcEEEEEeeCCCCC
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL--VPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~ni--v~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
-..||+|..+.||+. .|..+++|...... ...+..+|.++++.+..-.+ .+.++++.. .+...+|||+++|.+
T Consensus 6 ~~~i~~G~t~~~y~~---~~~~~VlR~~~~~~-~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~-~~~~glv~e~i~G~~ 80 (226)
T TIGR02172 6 WTQTGEGGNGESYTH---KTGKWMLKLYNPGF-DKETIKREFDASRKVFSLGIPTPHPFDLVED-GGRLGLIYELIVGKR 80 (226)
T ss_pred heeecCCCCcceeEe---cCCCEEEEeCCCCC-CHHHHHHHHHHHHHHHHcCCCCCceEEEEec-CCeeeeeeeecCCcc
Confidence 367999999999984 24567788775432 34567899999999864444 445554433 456789999999863
Q ss_pred -hhhh---------------------hhccCCCCCcCCCCCHHHHHH-HHH----------HHHH-Hhhhhcc-CCCCCe
Q 004248 617 -LSSS---------------------LYRKTNTEDDLQSLDWITRLK-IAI----------GAAE-GLSYLHH-ECTLPF 661 (766)
Q Consensus 617 -L~~~---------------------l~~~~~~~~~~~~l~~~~~~~-i~~----------~ia~-gL~yLH~-~~~~~i 661 (766)
+... ||.-.. . ......+.. +-. .+.. ..++|.. ...+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~---~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 155 (226)
T TIGR02172 81 SFSRIISDNPSRLEEIAKIFAEMAKKLHSTKC---D--TSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTC 155 (226)
T ss_pred chhhhhcCCHHHHHHHHHHHHHHHHHHhCCCC---C--CCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCce
Confidence 2111 111100 0 011111100 000 0000 1122211 113467
Q ss_pred EecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 662 VHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 662 iHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
+|+|+.|.||++++++ +.|.||+.+.
T Consensus 156 ~HgD~~~~Nii~~~~~-~~iIDwe~a~ 181 (226)
T TIGR02172 156 LHGDFQIGNLITSGKG-TYWIDLGDFG 181 (226)
T ss_pred EecCCCCCcEEEcCCC-cEEEechhcC
Confidence 8999999999999888 9999999875
|
This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636. |
| >COG0661 AarF Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=95.27 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=93.3
Q ss_pred ceeecCCcceEEEEEEcCCcEEEEEEeeccccC-------------------------------HH----------HHHH
Q 004248 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-------------------------------TE----------AYLL 578 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-------------------------------~~----------~~~~ 578 (766)
+.|+.++-|.||+|++.+|+.||||+.+.+-.. .+ ++.+
T Consensus 131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~ 210 (517)
T COG0661 131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR 210 (517)
T ss_pred CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence 679999999999999999999999998642110 00 2456
Q ss_pred HHHHHhhcC-----CCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHH-hhh
Q 004248 579 ELDFFSKVS-----HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG-LSY 652 (766)
Q Consensus 579 E~~~l~~l~-----H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~g-L~y 652 (766)
|..-+.+++ .|++ ++=..|++-.++..|+|||++|-.+.+...-+.. .++ +..++..++++ +..
T Consensus 211 EA~n~~~~~~nf~~~~~v-~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~------g~d---~k~ia~~~~~~f~~q 280 (517)
T COG0661 211 EAANAERFRENFKDDPDV-YVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSA------GID---RKELAELLVRAFLRQ 280 (517)
T ss_pred HHHHHHHHHHHcCCCCCe-EeceeehhccCCcEEEEEeeCCEecccHHHHHhc------CCC---HHHHHHHHHHHHHHH
Confidence 666666652 3433 2223344434567999999999888887422111 133 33344433332 122
Q ss_pred hccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 653 LHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 653 LH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+-.+ ++.|.|..|.||+++.++++-+-|||+....+
T Consensus 281 ~~~d---gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~ 316 (517)
T COG0661 281 LLRD---GFFHADPHPGNILVRSDGRIVLLDFGIVGRLD 316 (517)
T ss_pred HHhc---CccccCCCccceEEecCCcEEEEcCcceecCC
Confidence 2223 89999999999999999999999999986553
|
|
| >PRK09902 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=78.08 Aligned_cols=155 Identities=10% Similarity=0.081 Sum_probs=108.9
Q ss_pred cHHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeecc-------ccCHHHHHHHHHHHhhcCC--CCcccce
Q 004248 525 TYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQ-------SVKTEAYLLELDFFSKVSH--ARLVPLL 595 (766)
Q Consensus 525 ~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~-------~~~~~~~~~E~~~l~~l~H--~niv~l~ 595 (766)
+++.+-....+..+.-=-|+||-+-|++-..++. .+-+|+-... ...+..|.+|...+.++.. -.+.+..
T Consensus 9 ~f~~~w~~~~~wve~pN~~rgG~SgV~r~~~~g~-~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv 87 (216)
T PRK09902 9 EFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGK-KLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV 87 (216)
T ss_pred hHHHHHhCCCceecCCCcCCCCcceEEEEEeCCc-EEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc
Confidence 3444544444443333346788888998766544 6888987411 1236789999999999853 2344444
Q ss_pred eEEEecC----CcEEEEEeeCCC-CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCC
Q 004248 596 GHCMERE----NEKFLVYKYMPN-GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASS 670 (766)
Q Consensus 596 ~~~~~~~----~~~~lV~Ey~~~-GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~N 670 (766)
++.... -..+||+|-+++ -||.+++.+..- ...+...+..+..+|++.++-||+. ++.|+|+-+.|
T Consensus 88 -f~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~-----~~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~kh 158 (216)
T PRK09902 88 -FGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAV-----SPYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRH 158 (216)
T ss_pred -eeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCc-----CCcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhh
Confidence 332111 136899998874 489888864321 2467778889999999999999998 99999999999
Q ss_pred eeeCCCCc--EEeccchhhhh
Q 004248 671 ILLDDKFE--VRLGSLSEVCA 689 (766)
Q Consensus 671 ILl~~~~~--~kl~DFG~a~~ 689 (766)
|+++.++. +++.||--++.
T Consensus 159 Ill~~~g~~~v~lIDlEk~r~ 179 (216)
T PRK09902 159 IYVKTEGKAEAGFLDLEKSRR 179 (216)
T ss_pred eeecCCCCeeEEEEEhhccch
Confidence 99986666 99999986653
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-07 Score=101.41 Aligned_cols=182 Identities=13% Similarity=-0.006 Sum_probs=127.4
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCC-cccceeEEEecCCcEEEEEeeCCCC
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR-LVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~n-iv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
...+-.++|+++++||.+-...+....|.+... ....-++++|.+++||| .|+.++-+. .+...+++++|+.+|
T Consensus 245 ~~fh~fvK~altknpKkRptaeklL~h~fvs~~----l~~rl~~eLLdK~n~P~~~v~~~~d~~-~E~~~~i~~~i~s~~ 319 (829)
T KOG0576|consen 245 EFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT----LSRRLAIELLDKVNNPNPVVRYLEDYD-GEDYLWIPMRICSTG 319 (829)
T ss_pred HHHHHHHHHHhcCCCccCCChhhheeceeeccc----hhhHHHHHHHHHccCCCCcccccccCC-cccccchhhhhhcCC
Confidence 334557899999999987322233336655432 44566899999999999 666555343 255789999999987
Q ss_pred -ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC-
Q 004248 616 -DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD- 693 (766)
Q Consensus 616 -sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~- 693 (766)
+-...... ....+...+...+.+.-.++++|+|+. .=+||| ||+..+ +..|..||+.+..+...
T Consensus 320 rs~~~~~~~------se~~~~~~~~~~~~r~et~~l~~l~~~---~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~ 385 (829)
T KOG0576|consen 320 RSSALEMTV------SEIALEQYQFAYPLRKETRPLAELHSS---YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTM 385 (829)
T ss_pred ccccccCCh------hhHhhhhhhhhhhhhhhcccccccccc---cccCcc----cccccc-cccccccccCCcccCccc
Confidence 22211111 112344555566677788999999985 358999 887765 68899999998776544
Q ss_pred -CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 694 -AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 694 -~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
.....+++..++||...... +..+.|+|+.|+-..+|.-|-+|-
T Consensus 386 ~~~t~~~~~~~~~pev~~~~~---------~~~~p~~~~~~~~~~~~ap~~pPr 430 (829)
T KOG0576|consen 386 KPRTAIGTPEPLAPEVIQENT---------IDGCPDSGSLAVSAIQMAPGLPPR 430 (829)
T ss_pred ccccCCCCCCCCCchhhcccc---------cccCCCccCCCcchhhcCCCCCCC
Confidence 45567888999999776555 467889999999888888887764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 766 | ||||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 5e-23 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 1e-22 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 2e-19 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 3e-19 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 8e-14 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-13 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 9e-13 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 1e-12 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 1e-12 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 2e-11 | ||
| 1qpd_A | 279 | Structural Analysis Of The Lymphocyte-specific Kina | 2e-08 | ||
| 2zm1_A | 285 | Crystal Structure Of Imidazo Pyrazin 1 Bound To The | 6e-08 | ||
| 3kxz_A | 287 | The Complex Crystal Structure Of Lck With A Probe M | 6e-08 | ||
| 3kmm_A | 288 | Structure Of Human Lck Kinase With A Small Molecule | 6e-08 | ||
| 3bys_A | 277 | Co-Crystal Structure Of Lck And Aminopyrimidine Ami | 7e-08 | ||
| 2pl0_A | 289 | Lck Bound To Imatinib Length = 289 | 7e-08 | ||
| 3ppz_A | 309 | Crystal Structure Of Ctr1 Kinase Domain In Complex | 7e-08 | ||
| 2ofu_A | 273 | X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam | 7e-08 | ||
| 2ofv_A | 277 | Crystal Structure Of Aminoquinazoline 1 Bound To Lc | 7e-08 | ||
| 1qpe_A | 279 | Structural Analysis Of The Lymphocyte-Specific Kina | 7e-08 | ||
| 3lck_A | 271 | The Kinase Domain Of Human Lymphocyte Kinase (Lck), | 8e-08 | ||
| 3bym_A | 272 | X-Ray Co-Crystal Structure Aminobenzimidazole Triaz | 8e-08 | ||
| 2of2_A | 271 | Crystal Structure Of Furanopyrimidine 8 Bound To Lc | 9e-08 | ||
| 2og8_A | 265 | Crystal Structure Of Aminoquinazoline 36 Bound To L | 1e-07 | ||
| 3q6w_A | 307 | Structure Of Dually-phosphorylated Met Receptor Kin | 2e-07 | ||
| 3p86_A | 309 | Crystal Structure Of Ctr1 Kinase Domain Mutant D676 | 2e-07 | ||
| 2wd1_A | 292 | Human C-Met Kinase In Complex With Azaindole Inhibi | 2e-07 | ||
| 2g15_A | 318 | Structural Characterization Of Autoinhibited C-Met | 2e-07 | ||
| 4gg5_A | 319 | Crystal Structure Of Cmet In Complex With Novel Inh | 2e-07 | ||
| 3q6u_A | 308 | Structure Of The Apo Met Receptor Kinase In The Dua | 3e-07 | ||
| 3mpm_A | 267 | Lck Complexed With A Pyrazolopyrimidine Length = 26 | 3e-07 | ||
| 2rfn_A | 310 | X-ray Structure Of C-met With Inhibitor. Length = 3 | 3e-07 | ||
| 3i5n_A | 309 | Crystal Structure Of C-Met With Triazolopyridazine | 3e-07 | ||
| 2wgj_A | 306 | X-Ray Structure Of Pf-02341066 Bound To The Kinase | 3e-07 | ||
| 3lq8_A | 302 | Structure Of The Kinase Domain Of C-Met Bound To Xl | 3e-07 | ||
| 3f66_A | 298 | Human C-Met Kinase In Complex With Quinoxaline Inhi | 3e-07 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-07 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 6e-06 | ||
| 3dtc_A | 271 | Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp | 6e-07 | ||
| 3c1x_A | 373 | Crystal Structure Of The Tyrosine Kinase Domain Of | 7e-07 | ||
| 3a4p_A | 319 | Human C-Met Kinase Domain Complexed With 6-Benzylox | 7e-07 | ||
| 3gvu_A | 292 | The Crystal Structure Of Human Abl2 In Complex With | 7e-07 | ||
| 3dkc_A | 317 | Sgx Clone 5698a65kfg1h1 Length = 317 | 8e-07 | ||
| 1r0p_A | 312 | Crystal Structure Of The Tyrosine Kinase Domain Of | 8e-07 | ||
| 3cth_A | 314 | Crystal Structure Of The Tyrosine Kinase Domain Of | 8e-07 | ||
| 3qti_A | 314 | C-Met Kinase In Complex With Nvp-Bvu972 Length = 31 | 8e-07 | ||
| 3dkg_A | 317 | Sgx Clone 5698a109kfg1h1 Length = 317 | 8e-07 | ||
| 2f4j_A | 287 | Structure Of The Kinase Domain Of An Imatinib-Resis | 1e-06 | ||
| 2v7a_A | 286 | Crystal Structure Of The T315i Abl Mutant In Comple | 1e-06 | ||
| 4hct_A | 269 | Crystal Structure Of Itk In Complex With Compound 5 | 1e-06 | ||
| 3qrj_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain T | 2e-06 | ||
| 3qri_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain I | 2e-06 | ||
| 3v5j_A | 266 | Crystal Structure Of Interleukin-2 Inducible T-Cell | 2e-06 | ||
| 1sm2_A | 264 | Crystal Structure Of The Phosphorylated Interleukin | 2e-06 | ||
| 2h8h_A | 535 | Src Kinase In Complex With A Quinazoline Inhibitor | 2e-06 | ||
| 3qgw_A | 286 | Crystal Structure Of Itk Kinase Bound To An Inhibit | 2e-06 | ||
| 2hyy_A | 273 | Human Abl Kinase Domain In Complex With Imatinib (S | 2e-06 | ||
| 2hz0_A | 270 | Abl Kinase Domain In Complex With Nvp-Aeg082 Length | 2e-06 | ||
| 2hzi_A | 277 | Abl Kinase Domain In Complex With Pd180970 Length = | 2e-06 | ||
| 2g2f_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 2e-06 | ||
| 3pyy_A | 298 | Discovery And Characterization Of A Cell-Permeable, | 2e-06 | ||
| 2e2b_A | 293 | Crystal Structure Of The C-Abl Kinase Domain In Com | 2e-06 | ||
| 1opl_A | 537 | Structural Basis For The Auto-Inhibition Of C-Abl T | 2e-06 | ||
| 2gqg_A | 278 | X-Ray Crystal Structure Of Dasatinib (Bms-354825) B | 2e-06 | ||
| 2fo0_A | 495 | Organization Of The Sh3-Sh2 Unit In Active And Inac | 2e-06 | ||
| 1fmk_A | 452 | Crystal Structure Of Human Tyrosine-Protein Kinase | 2e-06 | ||
| 2hiw_A | 287 | Crystal Structure Of Inactive Conformation Abl Kina | 2e-06 | ||
| 1y57_A | 452 | Structure Of Unphosphorylated C-Src In Complex With | 2e-06 | ||
| 2g1t_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 2e-06 | ||
| 2bdf_A | 279 | Src Kinase In Complex With Inhibitor Ap23451 Length | 3e-06 | ||
| 3oy3_A | 284 | Crystal Structure Of Abl T315i Mutant Kinase Domain | 3e-06 | ||
| 2z60_A | 288 | Crystal Structure Of The T315i Mutant Of Abl Kinase | 3e-06 | ||
| 1fpu_A | 293 | Crystal Structure Of Abl Kinase Domain In Complex W | 3e-06 | ||
| 1ksw_A | 452 | Structure Of Human C-Src Tyrosine Kinase (Thr338gly | 3e-06 | ||
| 2qoh_A | 288 | Crystal Structure Of Abl Kinase Bound With Ppy-a Le | 3e-06 | ||
| 3oxz_A | 284 | Crystal Structure Of Abl Kinase Domain Bound With A | 3e-06 | ||
| 1opk_A | 495 | Structural Basis For The Auto-Inhibition Of C-Abl T | 4e-06 | ||
| 3dk7_A | 277 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 4e-06 | ||
| 3dk3_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 5e-06 | ||
| 3t9t_A | 267 | Crystal Structure Of Btk Mutant (F435t,K596r) Compl | 5e-06 | ||
| 3oez_A | 286 | Crystal Structure Of The L317i Mutant Of The Chicke | 6e-06 | ||
| 3kmw_A | 271 | Crystal Structure Of The IlkALPHA-Parvin Core Compl | 6e-06 | ||
| 1yoj_A | 283 | Crystal Structure Of Src Kinase Domain Length = 283 | 7e-06 | ||
| 3dk6_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 7e-06 | ||
| 1yi6_A | 276 | C-Term Tail Segment Of Human Tyrosine Kinase (258-5 | 8e-06 | ||
| 1yol_A | 283 | Crystal Structure Of Src Kinase Domain In Complex W | 8e-06 | ||
| 3dqw_A | 286 | C-Src Kinase Domain Thr338ile Mutant In Complex Wit | 9e-06 | ||
| 3u4w_A | 275 | Src In Complex With Dna-Templated Macrocyclic Inhib | 9e-06 | ||
| 3g6h_A | 286 | Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma | 1e-05 | ||
| 2oiq_A | 286 | Crystal Structure Of Chicken C-Src Kinase Domain In | 1e-05 | ||
| 3d7u_B | 277 | Structural Basis For The Recognition Of C-Src By It | 1e-05 | ||
| 3svv_A | 286 | Crystal Structure Of T338c C-Src Covalently Bound T | 1e-05 | ||
| 2ptk_A | 453 | Chicken Src Tyrosine Kinase Length = 453 | 1e-05 | ||
| 3k54_A | 283 | Structures Of Human Bruton's Tyrosine Kinase In Act | 2e-05 | ||
| 3gen_A | 283 | The 1.6 A Crystal Structure Of Human Bruton's Tyros | 2e-05 | ||
| 2qq7_A | 286 | Crystal Structure Of Drug Resistant Src Kinase Doma | 2e-05 | ||
| 3geq_A | 286 | Structural Basis For The Chemical Rescue Of Src Kin | 2e-05 | ||
| 3oct_A | 265 | Crystal Structure Of Bruton's Tyrosine Kinase Mutan | 2e-05 | ||
| 3pix_A | 274 | Crystal Structure Of Btk Kinase Domain Complexed Wi | 2e-05 | ||
| 3ocs_A | 271 | Crystal Structure Of Bruton's Tyrosine Kinase In Co | 2e-05 | ||
| 4gs6_A | 315 | Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz | 2e-05 | ||
| 2hwo_A | 286 | Crystal Structure Of Src Kinase Domain In Complex W | 2e-05 | ||
| 3p08_A | 267 | Crystal Structure Of The Human Btk Kinase Domain Le | 2e-05 | ||
| 1k2p_A | 263 | Crystal Structure Of Bruton's Tyrosine Kinase Domai | 2e-05 | ||
| 2eva_A | 307 | Structural Basis For The Interaction Of Tak1 Kinase | 2e-05 | ||
| 3miy_A | 266 | X-Ray Crystal Structure Of Itk Complexed With Sunit | 3e-05 | ||
| 3d7t_A | 269 | Structural Basis For The Recognition Of C-Src By It | 3e-05 | ||
| 1byg_A | 278 | Kinase Domain Of Human C-Terminal Src Kinase (Csk) | 4e-05 | ||
| 3d7u_A | 263 | Structural Basis For The Recognition Of C-Src By It | 4e-05 | ||
| 2x7f_A | 326 | Crystal Structure Of The Kinase Domain Of Human Tra | 5e-05 | ||
| 1k9a_A | 450 | Crystal Structure Analysis Of Full-Length Carboxyl- | 6e-05 | ||
| 3a4o_X | 286 | Lyn Kinase Domain Length = 286 | 9e-05 | ||
| 3omv_A | 307 | Crystal Structure Of C-Raf (Raf-1) Length = 307 | 1e-04 | ||
| 1mqb_A | 333 | Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro | 2e-04 | ||
| 3dak_A | 290 | Crystal Structure Of Domain-Swapped Osr1 Kinase Dom | 2e-04 | ||
| 2hk5_A | 270 | Hck Kinase In Complex With Lck Targetted Inhibitor | 3e-04 | ||
| 2vwi_A | 303 | Structure Of The Osr1 Kinase, A Hypertension Drug T | 3e-04 | ||
| 3nyx_A | 302 | Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T | 3e-04 | ||
| 1ad5_A | 438 | Src Family Kinase Hck-Amp-Pnp Complex Length = 438 | 3e-04 | ||
| 3nz0_A | 302 | Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3 | 3e-04 | ||
| 3kmu_A | 271 | Crystal Structure Of The IlkALPHA-Parvin Core Compl | 3e-04 | ||
| 1qcf_A | 454 | Crystal Structure Of Hck In Complex With A Src Fami | 4e-04 | ||
| 4e4l_A | 302 | Jak1 Kinase (Jh1 Domain) In Complex With Compound 3 | 4e-04 | ||
| 3sxr_A | 268 | Crystal Structure Of Bmx Non-Receptor Tyrosine Kina | 4e-04 | ||
| 3eyg_A | 290 | Crystal Structures Of Jak1 And Jak2 Inhibitor Compl | 4e-04 | ||
| 1u5q_A | 348 | Crystal Structure Of The Tao2 Kinase Domain: Activa | 5e-04 | ||
| 2p0c_A | 313 | Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro | 5e-04 | ||
| 4f1o_A | 287 | Crystal Structure Of The L1180t Mutant Roco4 Kinase | 5e-04 | ||
| 4f1m_A | 287 | Crystal Structure Of The G1179s Roco4 Kinase Domain | 5e-04 | ||
| 2zv7_A | 279 | Lyn Tyrosine Kinase Domain, Apo Form Length = 279 | 5e-04 | ||
| 4f0f_A | 287 | Crystal Structure Of The Roco4 Kinase Domain Bound | 5e-04 | ||
| 2gcd_A | 309 | Tao2 Kinase Domain-Staurosporine Structure Length = | 6e-04 | ||
| 3lxn_A | 318 | Structural And Thermodynamic Characterization Of Th | 7e-04 |
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285 | Back alignment and structure |
|
| >pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287 | Back alignment and structure |
|
| >pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288 | Back alignment and structure |
|
| >pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277 | Back alignment and structure |
|
| >pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289 | Back alignment and structure |
|
| >pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273 | Back alignment and structure |
|
| >pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277 | Back alignment and structure |
|
| >pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271 | Back alignment and structure |
|
| >pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272 | Back alignment and structure |
|
| >pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271 | Back alignment and structure |
|
| >pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265 | Back alignment and structure |
|
| >pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307 | Back alignment and structure |
|
| >pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292 | Back alignment and structure |
|
| >pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318 | Back alignment and structure |
|
| >pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308 | Back alignment and structure |
|
| >pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267 | Back alignment and structure |
|
| >pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310 | Back alignment and structure |
|
| >pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309 | Back alignment and structure |
|
| >pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306 | Back alignment and structure |
|
| >pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302 | Back alignment and structure |
|
| >pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271 | Back alignment and structure |
|
| >pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373 | Back alignment and structure |
|
| >pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292 | Back alignment and structure |
|
| >pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312 | Back alignment and structure |
|
| >pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314 | Back alignment and structure |
|
| >pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314 | Back alignment and structure |
|
| >pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287 | Back alignment and structure |
|
| >pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286 | Back alignment and structure |
|
| >pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269 | Back alignment and structure |
|
| >pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277 | Back alignment and structure |
|
| >pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277 | Back alignment and structure |
|
| >pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266 | Back alignment and structure |
|
| >pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264 | Back alignment and structure |
|
| >pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535 | Back alignment and structure |
|
| >pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273 | Back alignment and structure |
|
| >pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270 | Back alignment and structure |
|
| >pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277 | Back alignment and structure |
|
| >pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298 | Back alignment and structure |
|
| >pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293 | Back alignment and structure |
|
| >pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537 | Back alignment and structure |
|
| >pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278 | Back alignment and structure |
|
| >pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452 | Back alignment and structure |
|
| >pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287 | Back alignment and structure |
|
| >pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452 | Back alignment and structure |
|
| >pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279 | Back alignment and structure |
|
| >pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284 | Back alignment and structure |
|
| >pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288 | Back alignment and structure |
|
| >pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452 | Back alignment and structure |
|
| >pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288 | Back alignment and structure |
|
| >pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284 | Back alignment and structure |
|
| >pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495 | Back alignment and structure |
|
| >pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277 | Back alignment and structure |
|
| >pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267 | Back alignment and structure |
|
| >pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286 | Back alignment and structure |
|
| >pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Mgatp) Length = 271 | Back alignment and structure |
|
| >pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283 | Back alignment and structure |
|
| >pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276 | Back alignment and structure |
|
| >pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283 | Back alignment and structure |
|
| >pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286 | Back alignment and structure |
|
| >pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275 | Back alignment and structure |
|
| >pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286 | Back alignment and structure |
|
| >pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286 | Back alignment and structure |
|
| >pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277 | Back alignment and structure |
|
| >pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286 | Back alignment and structure |
|
| >pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453 | Back alignment and structure |
|
| >pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283 | Back alignment and structure |
|
| >pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283 | Back alignment and structure |
|
| >pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286 | Back alignment and structure |
|
| >pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265 | Back alignment and structure |
|
| >pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274 | Back alignment and structure |
|
| >pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271 | Back alignment and structure |
|
| >pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315 | Back alignment and structure |
|
| >pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267 | Back alignment and structure |
|
| >pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263 | Back alignment and structure |
|
| >pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307 | Back alignment and structure |
|
| >pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266 | Back alignment and structure |
|
| >pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269 | Back alignment and structure |
|
| >pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278 | Back alignment and structure |
|
| >pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263 | Back alignment and structure |
|
| >pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450 | Back alignment and structure |
|
| >pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286 | Back alignment and structure |
|
| >pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307 | Back alignment and structure |
|
| >pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333 | Back alignment and structure |
|
| >pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290 | Back alignment and structure |
|
| >pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270 | Back alignment and structure |
|
| >pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303 | Back alignment and structure |
|
| >pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438 | Back alignment and structure |
|
| >pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302 | Back alignment and structure |
|
| >pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex (Apo) Length = 271 | Back alignment and structure |
|
| >pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454 | Back alignment and structure |
|
| >pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268 | Back alignment and structure |
|
| >pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290 | Back alignment and structure |
|
| >pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348 | Back alignment and structure |
|
| >pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313 | Back alignment and structure |
|
| >pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287 | Back alignment and structure |
|
| >pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279 | Back alignment and structure |
|
| >pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309 | Back alignment and structure |
|
| >pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 2e-75
Identities = 109/420 (25%), Positives = 169/420 (40%), Gaps = 65/420 (15%)
Query: 46 SSRTELAALFELRSSL--GLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFR-RTRLG 102
S E+ L + L DW +PC ++GV C++ V I++S
Sbjct: 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPCT-FDGVTCRDDKVTSIDLSSKPLNVGFS 67
Query: 103 SQNPRF--------------------------------------------AADALVNLTH 118
+ + +L + +
Sbjct: 68 AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127
Query: 119 LASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSL---GNLTNLTSLYLSD 175
L N S L G +L +L+ LDL + SISG L L +S
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 176 NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLG 235
N ++G + + + L LD+S N+ + IP G L LDIS N L+G +
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 236 TLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG-LRSLQKFVIG 294
T ++L+ LN+S+N IP L SL L L+ N +G +P L G +L +
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 295 NNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGP-PPDVLWSMPQLRLLDISRNNFTGPLPN 353
N G + + S L+ + L N F+G P D L M L++LD+S N F+G LP
Sbjct: 303 GNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 354 SRSNVNTSTVELNISQNMFYGGLTPVLGRFRL-----VDLSGNYFEGRVPEYVHSNASSL 408
S +N++ S + L++S N F G + P L + + L N F G++P + SN S L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSEL 420
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 6e-73
Identities = 99/308 (32%), Positives = 142/308 (46%), Gaps = 9/308 (2%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS 174
L L + + G IPD+L TL LDL G +P G+ + L SL LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 175 DNGLTGTIP-SSLGQLSVLSVLDLSRNSLTGNIPTSFG-LLKNLSSLDISSNYLTGSIPP 232
N +G +P +L ++ L VLDLS N +G +P S L +L +LD+SSN +G I P
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 233 GLG--TLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
L + LQ L + NN IP L + LV L LS N LSG++PS L L L+
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350
+ N L G + L V L+ ++L N TG P L + L + +S N TG
Sbjct: 447 LKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPVLGRF---RLVDLSGNYFEGRVPEYVHSNASS 407
+P + L +S N F G + LG +DL+ N F G +P + +
Sbjct: 506 IPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 408 LDSNCLQN 415
+ +N +
Sbjct: 565 IAANFIAG 572
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 2e-68
Identities = 89/314 (28%), Positives = 135/314 (42%), Gaps = 28/314 (8%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT-NLTSLYL 173
+ + L S S G +P ++ L+ LDL SG +P SL NL+ +L +L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 174 SDNGLTGTIPSSLGQ--LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
S N +G I +L Q + L L L N TG IP + L SL +S NYL+G+IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
LG+LSKL+ L + N L IP +L + +L L L N L+G +PS L +L
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351
+ NN L+G + + + L I+ L N F+G P L L LD++ N F G +
Sbjct: 496 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 352 PNS---------------------RSNVNTSTVELNISQNMFYGGLTPVLGRF---RLVD 387
P + +++ + F G + L R +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 388 LSGNYFEGRVPEYV 401
++ + G
Sbjct: 615 ITSRVYGGHTSPTF 628
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 1e-67
Identities = 88/301 (29%), Positives = 135/301 (44%), Gaps = 15/301 (4%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS 174
L S + G + + + L+ LD+ S + S IP LG+ + L L +S
Sbjct: 176 GCGELKHLAISGNKISGDVD--VSR-CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDIS 231
Query: 175 DNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL 234
N L+G ++ + L +L++S N G IP LK+L L ++ N TG IP L
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289
Query: 235 -GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE-LRGLRSLQKFV 292
G L L++S N ++P G L L LS N+ SG +P + L +R L+
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLW--SMPQLRLLDISRNNFTGP 350
+ N SG L +L + L + L N F+GP L L+ L + N FTG
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPVLGRF---RLVDLSGNYFEGRVPEYVHSNASS 407
+P + SN + V L++S N G + LG R + L N EG +P+ + +
Sbjct: 410 IPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKT 467
Query: 408 L 408
L
Sbjct: 468 L 468
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 8e-67
Identities = 96/294 (32%), Positives = 141/294 (47%), Gaps = 13/294 (4%)
Query: 113 LVNLT-HLASFNASRFLLPGSIPDWLGQ-QLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
L NL+ L + + S G I L Q TLQ L L++ +G IP +L N + L S
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L+LS N L+GTIPSSLG LS L L L N L G IP +K L +L + N LTG I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
P GL + L ++++SNN L IP +G L++L L LS NS SG++P+EL RSL
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRN--NFT 348
+ N +G + +F Q + N G + + + + N F
Sbjct: 543 LDLNTNLFNGTIPAAMF-----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 349 GPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLV---DLSGNYFEGRVPE 399
G + + ++ NI+ ++ G +P + D+S N G +P+
Sbjct: 598 GIRSEQLNRL-STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 1e-60
Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 12/294 (4%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
L N + L S + S L G+IP LG L L+ L L + G IP L + L +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L L N LTG IPS L + L+ + LS N LTG IP G L+NL+ L +S+N +G+I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
P LG L +L+++ N +IPA + ++ N ++G ++ ++
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKE 586
Query: 291 FVIGNNF--LSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
N G S L +S + + G + + LD+S N +
Sbjct: 587 CHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 349 GPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLV---DLSGNYFEGRVPE 399
G +P ++ LN+ N G + +G R + DLS N +GR+P+
Sbjct: 646 GYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 1e-47
Identities = 73/289 (25%), Positives = 109/289 (37%), Gaps = 54/289 (18%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
L N T+L + S L G IP W+G+ L L L L + S SG IP LG+ +L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY--LTGSI 230
L+ N GTIP+++ + S ++ N + G + N G
Sbjct: 545 LNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
L LS N+++ + S++ LD+S N LSG +P E+ + L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF- 659
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350
L NL N +G PD + + L +LD+S N G
Sbjct: 660 ------IL--NLG----------------HNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPE 399
+P + S + T +DLS N G +PE
Sbjct: 696 IPQAMSALTMLTE----------------------IDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 5e-43
Identities = 57/242 (23%), Positives = 94/242 (38%), Gaps = 32/242 (13%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS 174
L +LA S G+IP LG +L LDL + +G IP ++ + ++
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGK----IA 566
Query: 175 DNGLTGTIPSSLGQLSVLSVLDLSRN--SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
N + G + + + N G L + +I+S G P
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
+ +L++S N L+ IP ++G + L L+L N +SGS+P E+ LR L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL- 685
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352
+LS N G P + ++ L +D+S NN +GP+P
Sbjct: 686 --------DLS----------------SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 353 NS 354
Sbjct: 722 EM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 7e-43
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 12/202 (5%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS 174
+ L + + L G+IP + +Q + + I+G + N + +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 175 DNG--LTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
N G L +LS + +++ G+ +F ++ LD+S N L+G IP
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
+G++ L LN+ +N ++ SIP ++GDL L LDLS N L G +P + L L +
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 293 IGNNFLSGNLSVNLFPTVSQLQ 314
+ NN LSG + P + Q +
Sbjct: 711 LSNNNLSGPI-----PEMGQFE 727
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 4e-71
Identities = 88/330 (26%), Positives = 130/330 (39%), Gaps = 42/330 (12%)
Query: 45 LSSRTELAALFELRSSLG--LRRRDWPRKVDPC-LVWNGVRCQNGSVVGINISGFRRTRL 101
L + + AL +++ LG W D C W GV C
Sbjct: 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLC------------------ 43
Query: 102 GSQNPRFAADALVNLTHLASFNASRFLLPGS--IPDWLGQQLPTLQALDLRS-CSISGVI 158
D + + + S LP IP L LP L L + ++ G I
Sbjct: 44 ---------DTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93
Query: 159 PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218
P ++ LT L LY++ ++G IP L Q+ L LD S N+L+G +P S L NL
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 219 LDISSNYLTGSIPPGLGTLSKL-QYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS 277
+ N ++G+IP G+ SKL + +S N L IP +L +L +DLS N L G
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212
Query: 278 VPSELRGLRSLQKFVIGNNFLSGNLS--VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP 335
++ QK + N L+ +L L + LR N G P L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 336 QLRLLDISRNNFTGPLPNSRSNVNTSTVEL 365
L L++S NN G +P +
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 8e-60
Identities = 70/305 (22%), Positives = 122/305 (40%), Gaps = 59/305 (19%)
Query: 112 ALVNLTHLASFNAS----RFLLPGSIPDWLGQQLPTLQALDLRSCSISGV--IPFSLGNL 165
L N T L+S+ + G + D Q + LDL ++ IP SL NL
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANL 75
Query: 166 TNLTSLYLSD-NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
L LY+ N L G IP ++ +L+ L L ++ +++G IP +K L +LD S N
Sbjct: 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLV-DLDLSMNSLSGSVPSELR 283
L+G++PP + +L L + N ++ +IP G L + +S N L+G +P
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF- 194
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
NL+ L + L +N G + S + + ++
Sbjct: 195 ----------------ANLN---------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 344 RNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHS 403
+N+ L ++ +S+N+ +DL N G +P+ + +
Sbjct: 230 KNSLAFDLG-----------KVGLSKNLNG------------LDLRNNRIYGTLPQGL-T 265
Query: 404 NASSL 408
L
Sbjct: 266 QLKFL 270
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG 177
+LA + SR +L G G Q + L S++ + +G NL L L +N
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255
Query: 178 LTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
+ GT+P L QL L L++S N+L G IP G L+ ++N P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
+ +L + + G++P L Q L L +L++ ++ G IP GNL
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297
Query: 173 LSDN-GLTGTIPSS 185
++N L G+ +
Sbjct: 298 YANNKCLCGSPLPA 311
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-47
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 523 SFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDL---QSVKTEAYLLE 579
F+ ++L A+ +FS+ N++ G G +++G L G V +KR+ Q + + + E
Sbjct: 19 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQ-FQTE 77
Query: 580 LDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITR 639
++ S H L+ L G CM E+ LVY YM NG ++S L + + LDW R
Sbjct: 78 VEMISMAVHRNLLRLRGFCMT-PTERLLVYPYMANGSVASCLRER---PESQPPLDWPKR 133
Query: 640 LKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
+IA+G+A GL+YLH C +HRDV+A++ILLD++FE +G
Sbjct: 134 QRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG 176
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 4e-47
Identities = 67/203 (33%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 503 PAGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVV 562
S +S L AT +F LI +G G +++G+L G V
Sbjct: 8 ATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVA 67
Query: 563 IKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSL 621
+KR +S + E + E++ S H LV L+G C E NE L+YKYM NG+L L
Sbjct: 68 LKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-RNEMILIYKYMENGNLKRHL 126
Query: 622 YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
Y S+ W RL+I IGAA GL YLH +HRDV++ +ILLD+ F ++
Sbjct: 127 YGSDL---PTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKI 180
Query: 682 ---GSLSEVCAQGGDAHQSRITR 701
G +S+ + H S T
Sbjct: 181 TDFG-ISKKGTELDQTHLS--TV 200
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 7e-47
Identities = 49/340 (14%), Positives = 97/340 (28%), Gaps = 39/340 (11%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
A++ LT L F + + NL +LT
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT--------GNIPTSFGLLKNLSSLDIS 222
+ + + +P+ L L + +++++ N + + + + I
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313
Query: 223 SNYL-TGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE 281
N L T + L + KL L N L +PA G L L+L+ N ++ +
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANF 372
Query: 282 LRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP------ 335
++ +N L ++ +VS + I N +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432
Query: 336 -QLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF-------YGGLTPVLGRF---R 384
+ +++S N + S + +N+ NM
Sbjct: 433 INVSSINLSNNQISKFPKELFST-GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491
Query: 385 LVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVPNQ 419
+DL N ++ + L N P Q
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 1e-45
Identities = 67/433 (15%), Positives = 128/433 (29%), Gaps = 78/433 (18%)
Query: 67 DWPRKVDPCL--VWNGVRC-QNGSVVGINISGFRRT---------------------RLG 102
+W + + GV NG V G+++ GF +
Sbjct: 59 NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118
Query: 103 SQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLG-QQLPTLQALDLRSCSISGVIPFS 161
F + R + D+ + L + S I S
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178
Query: 162 LGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG----------------- 204
T + N +T + ++ +L+ L + +
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Query: 205 --NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS--------SI 254
+ LK+L+ +++ + +P L L ++Q +NV+ N S
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 255 PAQLGDLDSLVDLDLSMNSL-SGSVPSELRGLRSLQKFVIGNNFLSGNLS--VNLFPTVS 311
A + + + + N+L + V + L+ ++ L N L G L +
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE----I 353
Query: 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVN-TSTVELNISQN 370
+L + L N T P + Q+ L + N +PN + + ++ S N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYN 412
Query: 371 MFYG-------GLTPVLGRF---RLVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQN 415
L P + ++LS N E + S S L N L
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTE 471
Query: 416 VPNQRTLVDCSSF 428
+P + +F
Sbjct: 472 IPKNSLKDENENF 484
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-41
Identities = 46/255 (18%), Positives = 93/255 (36%), Gaps = 30/255 (11%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLG-QQLPTLQALDLRSCSISGV-------IPFSLGNLT 166
+ + + + L IP+ + + + A+D I V + +
Sbjct: 375 FTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG-------NIPTSFGLLKNLSSL 219
N++S+ LS+N ++ S LS ++L N LT + +F L+S+
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493
Query: 220 DISSNYLTGSIPP--GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDL------DLSM 271
D+ N LT + TL L +++S NS S P Q + +L D
Sbjct: 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQG 551
Query: 272 NSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVL 331
N P + SL + IG+N + ++ + P + ++ ++ N +
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP---NISVLDIKDNPNISIDLSYV 607
Query: 332 WSMPQLRLLDISRNN 346
+ + + +
Sbjct: 608 CPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 6e-41
Identities = 44/261 (16%), Positives = 86/261 (32%), Gaps = 42/261 (16%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGV-IPFSLGNLTNLTSLYLSDNGLTG-------TIP 183
IP ++ L + + F +++ ++++ S N + +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 184 SSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG-------SIPPGLGT 236
+ + +S ++LS N ++ F LSS+++ N LT
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 237 LSKLQYLNVSNNSLASSIPA--QLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIG 294
L +++ N L + + + L LV +DLS NS S P++ +L+ F I
Sbjct: 487 TYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544
Query: 295 NNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354
N + N P+ + P L L I N+ +
Sbjct: 545 NQRD-------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584
Query: 355 RSNVNTSTVELNISQNMFYGG 375
+ + L+I N
Sbjct: 585 ---ITPNISVLDIKDNPNISI 602
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-26
Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 12/152 (7%)
Query: 131 GSIPDWLGQQLPTLQALDLRSCSISGVIP-FSLGNLTNLTSLYLSDNGLTGTIPSSLGQL 189
+ L ++DLR ++ + F L L + LS N + P+
Sbjct: 478 KDENENFKN-TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535
Query: 190 SVLSVL------DLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYL 243
S L D N P L +L+ L I SN + + + + L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVL 592
Query: 244 NVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275
++ +N S + + L +
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 1e-46
Identities = 55/276 (19%), Positives = 101/276 (36%), Gaps = 13/276 (4%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+PD L + L+L + + + + LTSL + N ++ P +L +
Sbjct: 18 QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L VL+L N L+ +F NL+ L + SN + L L++S+N L+
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Query: 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELR--GLRSLQKFVIGNNFLSGNLSVNLFPT 309
S+ L++L +L LS N + EL SL+K + +N + S F
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHA 193
Query: 310 VSQLQIIVLRQNGFTGPPPDVL---WSMPQLRLLDISRNNFTGPLPNSRSNVNTST-VEL 365
+ +L + L + L + +R L +S + + + + + L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253
Query: 366 NISQNMFYGGLTPVLGRF---RLVDLSGNYFEGRVP 398
++S N L N +
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 1e-45
Identities = 65/296 (21%), Positives = 111/296 (37%), Gaps = 15/296 (5%)
Query: 110 ADALVNLTHLASFNASR-FLLPGSIPDWLGQQLPT--LQALDLRSCSISGVIPFSLGNLT 166
++ L +L + S F ++ + L L L+L IS + + L
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 167 NLTSLYLSDNGLTGTIP-SSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
+L L L N + + L + + LS N SF L+ +L L +
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465
Query: 226 LTG--SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS-------- 275
L S P L L L++SNN++A+ L L+ L LDL N+L+
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525
Query: 276 GSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP 335
G L+GL L + +N + V +F + +L+II L N P V +
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
Query: 336 QLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGN 391
L+ L++ +N T + EL++ N F + ++ +
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 6e-43
Identities = 60/290 (20%), Positives = 108/290 (37%), Gaps = 19/290 (6%)
Query: 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202
+ + D ++ +P L TN+T L L+ N L ++ + S L+ LD+ N++
Sbjct: 5 SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 203 TGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLD 262
+ P L L L++ N L+ + L L++ +NS+
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 263 SLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV--SQLQIIVLRQ 320
+L+ LDLS N LS + L +LQ+ ++ NN + L S L+ + L
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSS 180
Query: 321 NGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS--RSNVNTSTVELNISQNMFYGGLTP 378
N P ++ +L L ++ L NTS L++S +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 379 VLGRFRLV-----DLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVPN 418
+ DLS N V + L + N +Q++ +
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFS 289
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-40
Identities = 61/349 (17%), Positives = 109/349 (31%), Gaps = 31/349 (8%)
Query: 108 FAADALVNLTHLASFNASRFLLPGSIPDWLGQ--QLPTLQALDLRSCSISGVIPFSLGNL 165
F+ + L + L S+ + L +++ L L + +S + L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245
Query: 166 --TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223
TNLT L LS N L S L L L N++ S L N+ L++
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 224 NY---------LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274
++ L L L++LN+ +N + L +L L LS +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 275 SGSVPSEL----RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG-PPPD 329
S + L + N +S + + F + L+++ L N
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
Query: 330 VLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRF------ 383
+ + + +S N + NS + S L + + + F
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALK-NVDSSPSPFQPLRNL 482
Query: 384 RLVDLSGNYFEGRVPEYVHSNAS----SLDSNCLQNVPNQRTLVDCSSF 428
++DLS N + + L N L + F
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-36
Identities = 53/249 (21%), Positives = 86/249 (34%), Gaps = 13/249 (5%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
DA L HL + + + + L + + L + S + +L
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Query: 171 LYLSDNGLTG--TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT- 227
L L L + PS L L++LDLS N++ L+ L LD+ N L
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518
Query: 228 -------GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPS 280
G L LS L LN+ +N DL L +DL +N+L+ S
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
Query: 281 ELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLL 340
SL+ + N ++ P L + +R N F + W + +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF---VNWI 635
Query: 341 DISRNNFTG 349
+ + N
Sbjct: 636 NETHTNIPE 644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 3e-36
Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 13/238 (5%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
+ S LT +P L + ++VL+L+ N L +F L+SLD+ N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 226 LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGL 285
++ P L L+ LN+ +N L+ +L +L L NS+ +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 286 RSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVL--WSMPQLRLLDIS 343
++L + +N LS + + LQ ++L N + L ++ L+ L++S
Sbjct: 121 KNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179
Query: 344 RNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRF------RLVDLSGNYFEG 395
N P + L ++ LT L R + LS +
Sbjct: 180 SNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 15/195 (7%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSIS--------GVIPFS 161
L +L + S + D L + L L+ LDL+ +++ G +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDML-EGLEKLEILDLQHNNLARLWKHANPGGPIYF 531
Query: 162 LGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221
L L++L L L NG L L ++DL N+L + F +L SL++
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591
Query: 222 SSNYLTGSIPPGLGT-LSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSV-- 278
N +T G L L++ N + + ++ + + ++ LS
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC 651
Query: 279 --PSELRGLRSLQKF 291
P G ++ F
Sbjct: 652 NTPPHYHG-FPVRLF 665
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 7e-44
Identities = 61/306 (19%), Positives = 103/306 (33%), Gaps = 22/306 (7%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
IPD L + + LDL + + +S + L L LS + + LS
Sbjct: 21 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
LS L L+ N + +F L +L L L +G L L+ LNV++N +
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 252 S-SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310
S +P +L +L LDLS N + ++LR L + + + LS N + P
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGA 196
Query: 311 ---SQLQIIVLRQNGFTGP-PPDVLWSMPQLRLLDISRNNFTG--PLPNSRSNVNTSTVE 364
+L + LR N + + + L + + F L +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 365 LNISQN------MFYGGLTPVLGRFRLV---DLSGNYFEGRVPEYVHSNASSLD--SNCL 413
L I + + + + V L E + L+ +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 414 QNVPNQ 419
P
Sbjct: 317 GQFPTL 322
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-41
Identities = 69/318 (21%), Positives = 107/318 (33%), Gaps = 32/318 (10%)
Query: 106 PRFAADALVNLTHL--ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLG 163
+F AL L +L F + L L + + L S +I V FS
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-- 301
Query: 164 NLTNLTSLYLSDNGLT-------------------GTIPSSLGQLSVLSVLDLSRNSLT- 203
L L + G S L L LDLSRN L+
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 204 -GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ-LGDL 261
G S +L LD+S N + + L +L++L+ +++L L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 262 DSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQN 321
+L+ LD+S + GL SL+ + N N ++F + L + L Q
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 322 GFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYG----GLT 377
P S+ L++L++S NNF S L+ S N L
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQ 539
Query: 378 PVLGRFRLVDLSGNYFEG 395
++L+ N F
Sbjct: 540 HFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-39
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 7/238 (2%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFS-LGNLTNL 168
+ + T L + S + ++LG L L+ LD + ++ + FS +L NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNI-PTSFGLLKNLSSLDISSNYLT 227
L +S LS L VL ++ NS N P F L+NL+ LD+S L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 228 GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGL-R 286
P +LS LQ LN+S+N+ S L+SL LD S+N + S EL+
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 287 SLQKFVIGNNFLSGNLSVNLFPT-VSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
SL + N + F + + +++ P MP + L+I+
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 4e-37
Identities = 52/263 (19%), Positives = 87/263 (33%), Gaps = 20/263 (7%)
Query: 164 NLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223
+ N+T + IP +L LDLS N L SF L LD+S
Sbjct: 6 VVPNIT-YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61
Query: 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELR 283
+ +LS L L ++ N + S L SL L +L+ +
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL---- 339
L++L++ + +N + F ++ L+ + L N L + Q+ L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 340 LDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV----LGRFRLVDLSGNYFEG 395
LD+S N P + + L + N + L + L F
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHK--LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 396 RVPEYVHSNASSLDSNCLQNVPN 418
N D + L+ + N
Sbjct: 240 ------EGNLEKFDKSALEGLCN 256
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-33
Identities = 66/335 (19%), Positives = 115/335 (34%), Gaps = 40/335 (11%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGV-IPFSLGNLTNL 168
A L+ L A L +G L TL+ L++ I +P NLTNL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSV----LDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
L LS N + + L L + + LDLS N + P +F + L L + +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210
Query: 225 YLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGD---LDSLVDLDLSMNSLS----- 275
+ + ++ + L+ L+ + + + D L+ L +L + L+
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 276 -GSVPSELRGLRSLQKFVIGNNFLSG----------------NLSVNLFPTVSQLQIIVL 318
+ L ++ F + + + N FPT+ + L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Query: 319 RQNGFTGPPPDVLWSMPQLRLLDISRN--NFTGPLPNSRSNVNTSTVELNISQNMFYGGL 376
G +P L LD+SRN +F G S TS L++S N +
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVI-TM 388
Query: 377 TPVLGRF---RLVDLSGNYFEGRVPEYVHSNASSL 408
+ +D + + V + +L
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 3e-42
Identities = 49/340 (14%), Positives = 94/340 (27%), Gaps = 41/340 (12%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
A+ LT L + + + S NL +LT
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG---------NIPTSFGLLKNLSSLDI 221
+ L + +P L L L L+++ N + + +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 222 SSNYLTG-SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPS 280
N L L + KL L+ +N + + A G L DL L N + +P
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA-FGTNVKLTDLKLDYNQIE-EIPE 612
Query: 281 EL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+ ++ +N L ++ +V + + N ++ SM +
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Query: 340 -----LDISRNNFTGPLPNSRSNVNTSTVELNISQNMF-------YGGLTPVLGRF---R 384
+ +S N + + + +S N+
Sbjct: 673 INASTVTLSYNEIQKFPTELFAT-GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 385 LVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVPNQ 419
+DL N ++ + L NC + P Q
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 2e-36
Identities = 42/275 (15%), Positives = 84/275 (30%), Gaps = 41/275 (14%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGV-IPFSLGNLTNLT 169
+A L + IP+ ++ L + + F+ ++ +
Sbjct: 589 EAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647
Query: 170 SLYLSDNGLTGTIPSSLGQLSV-----LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
S+ S N + + + S + LS N + F +S++ +S+N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 225 YLT-------GSIPPGLGTLSKLQYLNVSNNSLASSIPAQL--GDLDSLVDLDLSMNSLS 275
+T L +++ N L +S+ L L ++D+S N S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS 766
Query: 276 GSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP 335
S P++ L+ F + N P + + P
Sbjct: 767 -SFPTQPLNSSQLKAF---------GIRHQRD----------AEGNRILRQWPTGITTCP 806
Query: 336 QLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
L L I N+ + + L+I+ N
Sbjct: 807 SLIQLQIGSNDIRK-VDEKLT---PQLYILDIADN 837
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 4e-33
Identities = 57/377 (15%), Positives = 113/377 (29%), Gaps = 62/377 (16%)
Query: 101 LGSQNPRFAADALVNLTHLASFNASRFL-LPGSIPDWLGQQLPTLQALDLRSCSISGVIP 159
L +N R+ + + N H ++N ++ L + G P + L L G +P
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG-LLKNLSS 218
++G LT L L + T + + + + ++ + + F + L+
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400
Query: 219 LDISSNYLTG----------------------------SIPPGLGTLSKLQYLNVSNNSL 250
D+ + + I + L+KLQ + +N+
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460
Query: 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310
A D + + L+ L + N L L+ +
Sbjct: 461 TYDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-L 514
Query: 311 SQLQIIVLRQNGFTGPP---------PDVLWSMPQLRLLDISRNNFTGPLPNSRSNVN-T 360
+LQ + + N D + P++++ + NN P S S
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMV 573
Query: 361 STVELNISQNMF-----YGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL-----DS 410
L+ N +G + + L N E +PE + +
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNV----KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSH 628
Query: 411 NCLQNVPNQRTLVDCSS 427
N L+ +PN
Sbjct: 629 NKLKYIPNIFNAKSVYV 645
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-31
Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 25/229 (10%)
Query: 113 LVNLTHLASFNASRFLL---PGSIPDWLGQ-QLPTLQALDLRSCSISGVIPFSLGNLTNL 168
++ + S + S + +I + + + L I + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 169 TSLYLSDNGLT-------GTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGL--LKNLSSL 219
+++ LS+N +T + +L+ +DL N LT + F L LS++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLN------VSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
D+S N + S P S+L+ N + P + SL+ L + N
Sbjct: 759 DVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817
Query: 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNG 322
+ V +L L I +N ++ V + + VL +
Sbjct: 818 IR-KVDEKL--TPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 8e-28
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 22/205 (10%)
Query: 108 FAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSIS-------GVIPF 160
+ + ++ S + + + + L + ++
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFAT-GSPISTIILSNNLMTSIPENSLKPKDG 722
Query: 161 SLGNLTNLTSLYLSDNGLTGTIPSSL--GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218
+ N LT++ L N LT ++ L LS +D+S N + PT L +
Sbjct: 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780
Query: 219 LDI------SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272
I N + P G+ T L L + +N + + +L L LD++ N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN 837
Query: 273 SL-SGSVPSELRGLRSLQKFVIGNN 296
S V S + + ++ +
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-22
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 14/163 (8%)
Query: 131 GSIPDWLGQQLPTLQALDLRSCSISGVIP-FSLGNLTNLTSLYLSDNGLTGTIPSSLGQL 189
L +DLR ++ + F L L+++ +S N + + P+
Sbjct: 718 KPKDGNYKN-TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNS 775
Query: 190 SVLSVLDLSR------NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYL 243
S L + N + PT +L L I SN + + L +L L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYIL 832
Query: 244 NVSNNSLAS-SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGL 285
++++N S + + +++ + L + + G+
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGM-YVLLYDKTQDIRGCDALGI 874
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 1e-40
Identities = 60/326 (18%), Positives = 112/326 (34%), Gaps = 20/326 (6%)
Query: 106 PRFAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN 164
+ +L + P G ++++++L+ + +
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFE---GLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
+ L L L+ L+ +PS L LS L L LS N S +L+ L I N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 225 YLTGSIPPG-LGTLSKLQYLNVSNNSLASS--IPAQLGDLDSLVDLDLSMNSLSGSVPSE 281
+ G L L L+ L++S++ + +S QL +L L L+LS N
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 282 LRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLD 341
+ L+ + L + + F + L+++ L + + +P L+ L+
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 342 ISRNNFTGPLPNSRSNVN--TSTVELNISQNMFYGGLTPV----LGRFRLVDLSGNYFEG 395
+ N+F +++ L +S + L VDLS N
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLTS 514
Query: 396 RVPEYVHSNASS----LDSNCLQNVP 417
S+ L SN + +
Sbjct: 515 -SSIEALSHLKGIYLNLASNHISIIL 539
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 3e-39
Identities = 56/245 (22%), Positives = 88/245 (35%), Gaps = 8/245 (3%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSI--SGVIPFSLGNLTNL 168
+ N L + + + L L+ LDL I S L NL++L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSNYLT 227
SL LS N + + L +LDL+ L S F L L L++S + L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 228 GSIPPGLGTLSKLQYLNVSNNSLASSI---PAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
S L LQ+LN+ N L L L L LS LS
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344
L+ + + +N L+ S+ + + + L N + P +L + Q R +++ +
Sbjct: 499 LKMMNHVDLSHNRLTS-SSIEALSHLKGIYLN-LASNHISIILPSLLPILSQQRTINLRQ 556
Query: 345 NNFTG 349
N
Sbjct: 557 NPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-37
Identities = 59/267 (22%), Positives = 101/267 (37%), Gaps = 11/267 (4%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVI-PFSLGNLTNLT 169
LV L+ L S ++ P+L L ++ + + L NL NL
Sbjct: 295 SGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 170 SLYLSDNGLT--GTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT 227
L LS + + L LS L L+LS N +F L LD++ L
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Query: 228 GSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG---SVPSELR 283
L L+ LN+S++ L S L +L L+L N + L+
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
L L+ V+ LS + + F ++ + + L N T + L + + L +++
Sbjct: 474 TLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLA 531
Query: 344 RNNFTGPLPNSRSNVNTSTVELNISQN 370
N+ + LP+ + +N+ QN
Sbjct: 532 SNHISIILPSLLPI-LSQQRTINLRQN 557
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 5e-37
Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 18/299 (6%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
IP L + + L+ + + + L NLT L L+ + +
Sbjct: 26 EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L L L+ N L T+ K L L ++ L L+ L + +N ++
Sbjct: 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142
Query: 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVI--GNNFLSGNLSVNLFPT 309
S + + L LD N++ ++ L+ + N ++G + F +
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDS 201
Query: 310 VSQLQIIVLRQNGFTGPPPDVLW--SMPQLRLLDISRNNFTGPLPNS-RSNVNTSTVELN 366
+ Q + L ++ L L + P S +N
Sbjct: 202 -AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 367 ISQNMFYGGLTPVLGRF---RLVDLSGNYFEGRVPEYVHSNAS----SLDSNCLQNVPN 418
+ ++ F+ + F + +DL+ + +P + ++ L +N +N+
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-30
Identities = 56/245 (22%), Positives = 88/245 (35%), Gaps = 11/245 (4%)
Query: 108 FAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFS-LGNLT 166
L NL+HL S N S + ++ P L+ LDL + S NL
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS---LDISS 223
L L LS + L + L L L+L N L+ L L +S
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485
Query: 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELR 283
L+ +L + ++++S+N L SS L L + L+L+ N +S +PS L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
L + + N L S F L+ + + P LR + +S
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYF-----LEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599
Query: 344 RNNFT 348
+
Sbjct: 600 DVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-27
Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 10/246 (4%)
Query: 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS 253
+ L IP L + L+ S N L L L +L+++ +
Sbjct: 16 TYNCENLGLN-EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 254 IPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313
L L L+ N L + L G ++L+ +S + L
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTL 131
Query: 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNV-NTSTVELNISQNMF 372
+ + L N + + +L++LD N S++ + + LN++ N
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 373 YG--GLTPVLGRFRLVDLSGNYFEGRVPE-YVHSNASSLDSNCLQNVPNQRTLVDCSSFY 429
G F+ ++ G + + +S SL ++ + + F
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED--MDDEDISPAVFE 249
Query: 430 AARGLS 435
+S
Sbjct: 250 GLCEMS 255
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-39
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 20/171 (11%)
Query: 523 SFTYQQLLAATGDFSD------ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKT--- 573
SF++ +L T +F + N + G G +++G + V +K++ T
Sbjct: 14 SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNT-TVAVKKLAAMVDITTEE 72
Query: 574 --EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDL 631
+ + E+ +K H LV LLG + ++ LVY YMPNG L L D
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSD-GDDLCLVYVYMPNGSLLDRLSCL----DGT 127
Query: 632 QSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L W R KIA GAA G+++LH +HRD+++++ILLD+ F ++
Sbjct: 128 PPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKIS 175
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-37
Identities = 60/306 (19%), Positives = 108/306 (35%), Gaps = 23/306 (7%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+PD + + + +DL + + +S N + L L LS + + L
Sbjct: 25 KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
LS L L+ N + P SF L +L +L L +G L L+ LNV++N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 252 S-SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV----IGNNFLSGNLSVNL 306
S +PA +L +LV +DLS N + ++L+ LR + + N + +
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200
Query: 307 FPTVSQLQIIVLRQNGFTG-PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSN-------V 358
F + L + LR N + L ++ L + + F
Sbjct: 201 FQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259
Query: 359 NTSTVELNISQNMFYGGLTPVLGRF---RLVDLSGNYFEGRVPEYVHSNASSLD--SNCL 413
+ + E ++ + + L+G + H SL L
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319
Query: 414 QNVPNQ 419
+ P
Sbjct: 320 KQFPTL 325
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 8e-36
Identities = 62/260 (23%), Positives = 102/260 (39%), Gaps = 13/260 (5%)
Query: 138 GQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDL 197
+ Q+L + C + F +L L SL L+ N + I L LS LDL
Sbjct: 303 VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDL 357
Query: 198 SRNSLTGNIPTSFGLLK--NLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP 255
SRN+L+ + S+ L +L LD+S N + L +LQ+L+ +++L
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416
Query: 256 AQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQ 314
L+ L+ LD+S + GL SL + N N N+F + L
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Query: 315 IIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYG 374
+ L + V ++ +L+LL++S NN + + S L+ S N
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIET 535
Query: 375 ---GLTPVLGRFRLVDLSGN 391
L +L+ N
Sbjct: 536 SKGILQHFPKSLAFFNLTNN 555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-31
Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%)
Query: 108 FAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFS-LGNL 165
++ +L HL SFN + + L LQ LD + ++ V FS +L
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-----IMSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSL 423
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSN 224
L L +S L+ L+ L ++ NS N ++ F NL+ LD+S
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
L TL +LQ LN+S+N+L + L SL LD S N + S
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Query: 285 LRSLQKFVIGNNFLS 299
+SL F + NN ++
Sbjct: 544 PKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-31
Identities = 50/275 (18%), Positives = 89/275 (32%), Gaps = 20/275 (7%)
Query: 156 GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKN 215
G + + + N+T D L+ +P + S +DLS N L SF
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 216 LSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275
L LD+S + L L L ++ N + S P L SL +L L+
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 276 GSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP 335
+ L +L+K + +NF+ F ++ L + L N + L +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 336 QLRL----LDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV----LGRFRLVD 387
+ LD+S N + EL + N + L +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQ--AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235
Query: 388 LSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTL 422
L F+ N + + ++ + +
Sbjct: 236 LILGEFKD------ERNLEIFEPSIMEGLCDVTID 264
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-25
Identities = 53/329 (16%), Positives = 96/329 (29%), Gaps = 30/329 (9%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT- 169
+ L L N + + L L +DL I + L L
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181
Query: 170 ---SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIP-TSFGLLKNLSSLDISSNY 225
SL +S N + I Q L L L N + NI T L L +
Sbjct: 182 VNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240
Query: 226 LTGSIP---PGLGTLSKLQYLNV-----SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS 277
+ L + + + + S + L ++ + L+ S+
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY- 299
Query: 278 VPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQL 337
++ Q I L +++L L+ + L N + ++P L
Sbjct: 300 -LEDVPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNKGSISFK--KVALPSL 352
Query: 338 RLLDISRNNFTGPLPNSRSNVN-TSTVELNISQNMFY--GGLTPVLGRFRLVDLSGNYFE 394
LD+SRN + S S++ S L++S N L + +D + +
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412
Query: 395 GRVPEYVHSNASSL-----DSNCLQNVPN 418
+ L + +
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-20
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 3/164 (1%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ LT L + + + + L LDL C + + L L
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
L +S N L S QL LS LD S N + + K+L+ ++++N +
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-C 559
Query: 230 IPPGLGTLSKLQYLNVSNNSLASSIPAQLGDL--DSLVDLDLSM 271
I L ++ ++ A ++ ++D + S
Sbjct: 560 ICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 29/238 (12%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
PD + L LQ + + + + +P ++ L +L L+ N L +P+S+ L+
Sbjct: 95 QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151
Query: 192 LSVLDLSRNSLTGNIPTSFG---------LLKNLSSLDISSNYLTGSIPPGLGTLSKLQY 242
L L + +P L NL SL + + S+P + L L+
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210
Query: 243 LNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF-VIGNNFLS-- 299
L + N+ L S++ + L L +LDL + + P G L++ + + L
Sbjct: 211 LKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 300 ----GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPN 353
L+ QL+ + LR P ++ +P ++ + + +
Sbjct: 270 PLDIHRLT--------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 34/277 (12%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQ-QLPTLQALDLRSCSISGVIPFSLGNLTNLTSL 171
N + + L + D L P AL+LRS + P L++L +
Sbjct: 52 QANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109
Query: 172 YLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
+ GL +P ++ Q + L L L+RN L +P S L L L I + +P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167
Query: 232 PGLG---------TLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL 282
L L LQ L + + S+PA + +L +L L + + LS ++ +
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAI 225
Query: 283 RGLRSLQKFVI-GNNFLS------GNLSVNLFPTVSQLQIIVLR-QNGFTGPPPDVLWSM 334
L L++ + G L G + L+ ++L+ + P D + +
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGR--------APLKRLILKDCSNLLTLPLD-IHRL 276
Query: 335 PQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM 371
QL LD+ LP+ + + + + + ++
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHL 312
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 3e-34
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 14/205 (6%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN------ 164
D + L + +R L ++P + L L+ L +R+C +P L +
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 165 ---LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221
L NL SL L G+ ++P+S+ L L L + + L+ + + L L LD+
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236
Query: 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE 281
+ PP G + L+ L + + S ++P + L L LDL +PS
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 282 LRGLRSLQKFVIGNNFLSGNLSVNL 306
+ L + ++ + L L +
Sbjct: 297 IAQLPANCIILVPPH-LQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-29
Identities = 38/252 (15%), Positives = 74/252 (29%), Gaps = 48/252 (19%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLT-----------------NLTSLYLSDNGLTG- 180
+ L + + L N + +
Sbjct: 9 HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68
Query: 181 -TIPSSLGQLSV--LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL 237
L + L+L L P L +L + I + L +P +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126
Query: 238 SKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL---------RGLRSL 288
+ L+ L ++ N L ++PA + L+ L +L + +P L +GL +L
Sbjct: 127 AGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185
Query: 289 QKFVIGNNFLS------GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342
Q + + NL L+ + +R + + P + +P+L LD+
Sbjct: 186 QSLRLEWTGIRSLPASIANL--------QNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236
Query: 343 SRNNFTGPLPNS 354
P
Sbjct: 237 RGCTALRNYPPI 248
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 8/165 (4%)
Query: 101 LGSQNPRFAADALVNLTHL-ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIP 159
L S + LVNL L + R S+P + L L++L +R+ +S +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIAN-LQNLKSLKIRNSPLSA-LG 222
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
++ +L L L L P G + L L L S +P L L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSL 264
D+ +P + L + V + A + +
Sbjct: 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 35/239 (14%)
Query: 161 SLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGL-------- 212
+ + +LY + L Q D +R S
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66
Query: 213 -------------LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
+L++ S L P LS LQ++ + L +P +
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQ 124
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF-VIGNNFLS------GNLSV-NLFPTVS 311
L L L+ N L ++P+ + L L++ + L+ + +
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
LQ + L G P + ++ L+ L I + + L + ++ EL++
Sbjct: 184 NLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSA-LGPAIHHL-PKLEELDLRGC 239
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 18/145 (12%), Positives = 35/145 (24%), Gaps = 7/145 (4%)
Query: 228 GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRS 287
GS S + L ++ L + D + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 288 LQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
Q L + T + LR P + + L+ + I
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGL 116
Query: 348 TGPLPNSRSNVNTSTVELNISQNMF 372
LP++ L +++N
Sbjct: 117 ME-LPDTMQQF-AGLETLTLARNPL 139
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-34
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 13/248 (5%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLT--GTIPSSL 186
+P IP + L+L S + + LT LT L LS NGL+ G S
Sbjct: 22 VPTGIP-------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 187 GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNV 245
+ L LDLS N + + ++F L+ L LD + L + +L L YL++
Sbjct: 75 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133
Query: 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE-LRGLRSLQKFVIGNNFLSGNLSV 304
S+ + L SL L ++ NS + + LR+L + L LS
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192
Query: 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVE 364
F ++S LQ++ + N F + L++LD S N+ + +S
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252
Query: 365 LNISQNMF 372
LN++QN F
Sbjct: 253 LNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 13/242 (5%)
Query: 158 IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT--GNIPTSFGLLKN 215
+P + ++ T L L N L +L+ L+ L LS N L+ G S +
Sbjct: 22 VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79
Query: 216 LSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ--LGDLDSLVDLDLSMNS 273
L LD+S N + ++ L +L++L+ +++L + L +L+ LD+S
Sbjct: 80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH 137
Query: 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWS 333
+ GL SL+ + N N ++F + L + L Q P S
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 334 MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF----YGGLTPVLGRFRLVDLS 389
+ L++L++S NNF + S L+ S N L ++L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 390 GN 391
N
Sbjct: 257 QN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 96 FRRTRLGSQNPRFAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS- 153
F+ + L + +L NL +L S +R + + L +L+ L + S
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVLKMAGNSF 162
Query: 154 ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLL 213
+P L NLT L LS L P++ LS L VL++S N+ + L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 214 KNLSSLDISSNYLTGSIPPGL--GTLSKLQYLNVSNNSLA 251
+L LD S N++ + S L +LN++ N A
Sbjct: 223 NSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 8e-34
Identities = 59/309 (19%), Positives = 118/309 (38%), Gaps = 47/309 (15%)
Query: 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFS---------- 161
L + + + SI + L L+ L+L I+ + P S
Sbjct: 39 TQEELESITKLVVAGEKV-ASIQGI--EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYI 95
Query: 162 ----------LGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211
L NLTNL LYL+++ ++ S L L+ + L+L N ++
Sbjct: 96 GTNKITDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLS 152
Query: 212 LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSM 271
+ L+ L ++ + + P + L+ L L+++ N + P L L SL +
Sbjct: 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 272 NSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVL 331
N ++ + + + L IGNN ++ ++ +SQL + + N + +
Sbjct: 209 NQITDI--TPVANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQISDINA--V 261
Query: 332 WSMPQLRLLDISRNNFTGPLPNSRSNVN--TSTVELNISQNMFYGGLTPVLGRF---RLV 386
+ +L++L++ N + S +N + L ++ N V+G +
Sbjct: 262 KDLTKLKMLNVGSNQISDI-----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316
Query: 387 DLSGNYFEG 395
LS N+
Sbjct: 317 FLSQNHITD 325
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-33
Identities = 57/262 (21%), Positives = 109/262 (41%), Gaps = 24/262 (9%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
AL NLT+L + + P L L + +L+L + + L N+T L
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP--LAN-LTKMYSLNLGANHNLSDLS-PLSNMTGLNY 159
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L ++++ + P + L+ L L L+ N + P L +L N +T
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
P + +++L L + NN + P L +L L L++ N +S + ++ L L+
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG- 349
+G+N +S +++ +SQL + L N +V+ + L L +S+N+ T
Sbjct: 270 LNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 350 -PLPNSRSNVNTSTVELNISQN 370
PL + + + +
Sbjct: 327 RPLAS-----LSKMDSADFANQ 343
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-32
Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 24/246 (9%)
Query: 128 LLPGSIPDWLG-QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL 186
LP I L L+ S++ V+ L ++T L ++ + +
Sbjct: 7 TLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGI 62
Query: 187 GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246
L+ L L+L+ N +T P L L++L I +N +T L L+ L+ L ++
Sbjct: 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118
Query: 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
++++ P L +L + L+L N S S L + L + + + V
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK---DVTP 172
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG--PLPNSRSNVNTSTVE 364
++ L + L N P L S+ L N T P+ N T
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN-----MTRLNS 225
Query: 365 LNISQN 370
L I N
Sbjct: 226 LKIGNN 231
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-29
Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 16/206 (7%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT 203
L I+ + P +L L +T + +L ++ L ++ +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 204 GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDS 263
+I L NL L+++ N +T P L L KL L + N + + I A L +L +
Sbjct: 58 -SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI-TDISA-LQNLTN 111
Query: 264 LVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGF 323
L +L L+ +++S S L L + +G N +LS ++ L + + ++
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167
Query: 324 TGPPPDVLWSMPQLRLLDISRNNFTG 349
P + ++ L L ++ N
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIED 191
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-28
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
L +L I+ + P + N+T L SL + +N +T P L LS L+ L++
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
N ++ + L L L++ SN ++ L LS+L L ++NN L + +
Sbjct: 252 TNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVI 307
Query: 259 GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299
G L +L L LS N ++ L L + N +
Sbjct: 308 GGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-26
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
L +LT L F A + P + + L +L + + I+ + P L NL+ LT
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VAN-MTRLNSLKIGNNKITDLSP--LANLSQLTW 247
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L + N ++ +++ L+ L +L++ N ++ + L L+SL +++N L
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275
+G L+ L L +S N + P L L + D + +
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 7e-33
Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 7/264 (2%)
Query: 109 AADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNL 168
A NL +L + L IP + L L LD+ I ++ + +L NL
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG 228
SL + DN L + L+ L L L + +LT + L L L + +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN- 189
Query: 229 SIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE-LRGLR 286
+I L +L+ L +S+ ++ +L L ++ +L+ +VP +R L
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248
Query: 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNN 346
L+ + N +S + ++ + +LQ I L P + LR+L++S N
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 347 FTGPLPNSRSNVNTSTVELNISQN 370
T L S + + L + N
Sbjct: 308 LTT-LEESVFHSVGNLETLILDSN 330
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-32
Identities = 77/340 (22%), Positives = 130/340 (38%), Gaps = 37/340 (10%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
++ P L+ L+L +S V P + NL NL +L L N L LS
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSL 250
L+ LD+S N + + F L NL SL++ N L I L+ L+ L + +L
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL 164
Query: 251 ASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPT 309
+SIP + L L L+ L L +++ + L L+ I + ++ N
Sbjct: 165 -TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Query: 310 VSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS-RSNVNTSTVELN-- 366
++ L + + T P + + LR L++S N + + + ++L
Sbjct: 224 LN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282
Query: 367 ----ISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTL 422
+ F G L R++++SGN ++L+ + +V N TL
Sbjct: 283 QLAVVEPYAFRG-----LNYLRVLNVSGNQL------------TTLEESVFHSVGNLETL 325
Query: 423 V--------DCSSFYAARGLSFDNFGRPNATQPPPPETSG 454
+ DC + R NF R T P G
Sbjct: 326 ILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQG 365
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 9e-32
Identities = 54/239 (22%), Positives = 98/239 (41%), Gaps = 4/239 (1%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
L++L + S + + D++ Q L L++L++ + + + L +L
Sbjct: 97 LGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
L L LT +L L L VL L ++ SF L L L+IS +
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 230 IPPGLGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSL 288
+ P L L++++ +L +++P + L L L+LS N +S S L L L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 289 QKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
Q+ + L+ + F ++ L+++ + N T V S+ L L + N
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 67/305 (21%), Positives = 107/305 (35%), Gaps = 34/305 (11%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P IP + LDL I + + +L L L++N ++ P +
Sbjct: 26 VPEGIP-------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78
Query: 189 LSVLSVLDLSRNSLTGNIPT-SFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVS 246
L L L L N L IP F L NL+ LDIS N + + + L L+ L V
Sbjct: 79 LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVG 136
Query: 247 NNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN 305
+N L I + L+SL L L +L+ L L L + + ++ +
Sbjct: 137 DNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDY 194
Query: 306 LFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVEL 365
F + +L+++ + + L L I+ N T +P L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFL 253
Query: 366 NISQN--------MFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL-----DSNC 412
N+S N M + L R + + L G V Y + L N
Sbjct: 254 NLSYNPISTIEGSMLHE-----LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307
Query: 413 LQNVP 417
L +
Sbjct: 308 LTTLE 312
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 3e-20
Identities = 53/275 (19%), Positives = 97/275 (35%), Gaps = 34/275 (12%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+AL +L L + +I D+ ++L L+ L++ + + NLT
Sbjct: 169 TEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
SL ++ LT ++ L L L+LS N ++ + L L + + L
Sbjct: 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-V 286
Query: 230 IPPG-LGTLSKLQYLNVSNNSLASSIPAQL-GDLDSLVDLDLSMNSLS------------ 275
+ P L+ L+ LNVS N L +++ + + +L L L N L+
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR 345
Query: 276 -------GSV----PSELRG--LRSLQKFVIGNNFLSGNLSVNLFP----TVSQLQIIVL 318
P ++G + ++ N F + V + +
Sbjct: 346 WRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQF 405
Query: 319 RQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPN 353
PPP +LW P+ L+ N P+
Sbjct: 406 VCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 8e-33
Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 8/203 (3%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
P+++ L + +IS V S ++YL++N +T G S + LDL
Sbjct: 96 LVGPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 199 RNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ 257
N + N L L++ N++ + + +KL+ L++S+N L + + +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL-AFMGPE 209
Query: 258 LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIV 317
+ + L N L + LR ++L+ F + N + F ++Q +
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
Query: 318 LRQNGFTGPPPDVLWSMPQLRLL 340
+ + ++P L
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHY 291
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 49/295 (16%), Positives = 103/295 (34%), Gaps = 22/295 (7%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+I + + Q + + S+ + + N+ L LS N L+ + L +
Sbjct: 1 AIHE-IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L +L+LS N L L L +LD+++NY+ + ++ L+ +NN++
Sbjct: 60 LELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELLV----GPSIETLHAANNNI- 111
Query: 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVS 311
S + ++ L+ N ++ + +Q + N + L +
Sbjct: 112 SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM 371
L+ + L+ N V +L+ LD+S N + + +++ N
Sbjct: 170 TLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSA-AGVTWISLRNNK 225
Query: 372 FYGGLTPVLGRF---RLVDLSGNYFEGRVPEYVHSNA---SSLDSNCLQNVPNQR 420
+ L DL GN F S ++ ++ + Q
Sbjct: 226 L-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 6e-32
Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 25/291 (8%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
L LT+L S A+ + P L L L L + + + +LTNLT
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKDIGTLA--SLTNLTD 247
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L L++N ++ P L L+ L+ L L N ++ P L L++L+++ N L
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303
Query: 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
P + L L YL + N+++ P + L L L N +S S L L ++
Sbjct: 304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 357
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350
G+N +S + ++++ + L +T P + + + + +N
Sbjct: 358 LSAGHNQIS---DLTPLANLTRITQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGAL 411
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRL---VDLSGNYFEGRVP 398
+ + + S E +I+ N+ V F + F G V
Sbjct: 412 IAPATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 7e-31
Identities = 55/259 (21%), Positives = 101/259 (38%), Gaps = 24/259 (9%)
Query: 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSL 171
L + + ++ L + L I + + L NLT +
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQI 73
Query: 172 YLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
S+N LT P L L+ L + ++ N + P L NL+ L + +N +T P
Sbjct: 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129
Query: 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
L L+ L L +S+N++ S I A L L SL L L L +L++
Sbjct: 130 --LKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351
I +N +S +++ ++ L+ ++ N + P L + L L ++ N
Sbjct: 183 DISSNKVS---DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG 237
Query: 352 PNSRSNVNTSTVELNISQN 370
+ T+ +L+++ N
Sbjct: 238 TLAS---LTNLTDLDLANN 253
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 43/251 (17%)
Query: 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIP------------------ 183
P A + I+ + F+ L L +T T+
Sbjct: 2 PLGSATITQDTPINQI--FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK 59
Query: 184 --SSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQ 241
+ L+ L+ ++ S N LT P L L + +++N + P L L+ L
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115
Query: 242 YLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN 301
L + NN + P L +L +L L+LS N++S S L GL SLQ+ GN
Sbjct: 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLK 171
Query: 302 LSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG--PLPNSRSNVN 359
NL + L+ + + N + L + L L + N + PL
Sbjct: 172 PLANL----TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI-----L 220
Query: 360 TSTVELNISQN 370
T+ EL+++ N
Sbjct: 221 TNLDELSLNGN 231
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-31
Identities = 64/312 (20%), Positives = 113/312 (36%), Gaps = 33/312 (10%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTI-PSSLGQLSVLSVLDL 197
Q L T + L L I V S L L L L TI + L L +LDL
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 198 SRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG--LGTLSKLQYLNVSNNSLAS-SI 254
+ + P +F L +L L + L+ ++ L L L++S N + S +
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 255 PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLR--SLQKFVIGNNFLSGNLSVNLFPTVSQ 312
G L+SL +D S N + EL L+ +L F + N L +SV+ ++
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200
Query: 313 LQIIVLR-----------------QNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSR 355
+ +VL N + L + +N P N+
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260
Query: 356 SNVNTSTVE-LNISQNMFY---GGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL--- 408
+ + S+V L++S + + L ++++L+ N ++ + +L
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVL 319
Query: 409 --DSNCLQNVPN 418
N L + +
Sbjct: 320 NLSYNLLGELYS 331
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 66/398 (16%), Positives = 132/398 (33%), Gaps = 60/398 (15%)
Query: 138 GQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDL 197
G +++ LDL + + L +L L L+ N + + L L VL+L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 198 SRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ 257
S N L ++F L ++ +D+ N++ L KLQ L++ +N+L +
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----- 376
Query: 258 LGDLDSLVDLDLSMNSLSG---------------------SVPSELRGLRSLQKFVIGNN 296
+ + S+ D+ LS N L + L + LQ ++ N
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436
Query: 297 FLSGNLSVNLFPTVSQLQIIVLRQNGF-----TGPPPDVLWSMPQLRLLDISRNNFTGPL 351
S L+ + L +N T DV + L++L ++ N L
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-L 495
Query: 352 PNSRSNVNTSTVELNISQNMF-YGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASS-LD 409
P + T+ L+++ N + ++D+S N P+ S + +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555
Query: 410 SNCL-----------------QNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQPPPPET 452
N + + C + G+S + E
Sbjct: 556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL---------STEG 606
Query: 453 SGDSNRKIIVLSAVLGGFGLIVLLVLLALLALCFCKKR 490
+ + ++ + + L L+ +L + +
Sbjct: 607 CDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGF 644
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 9e-29
Identities = 67/321 (20%), Positives = 119/321 (37%), Gaps = 30/321 (9%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL--TNLTSLY 172
N + + S L + +I + L +++ L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSL-ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
LS + L L VL+L+ N + +F L NL L++S N L +
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYS 331
Query: 233 G-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
L K+ Y+++ N +A L+ L LDL N+L + + + S+
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDI 386
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG-PPPDVLWSMPQLRLLDISRNNFTGP 350
FLSGN V L +I L +N L +P L++L +++N F+
Sbjct: 387 -----FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPV--------LGRFRLVDLSGNYFEGRVPEYVH 402
+ + N S +L + +NM L +++ L+ NY +P V
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVF 500
Query: 403 SNASSL-----DSNCLQNVPN 418
S+ ++L +SN L + +
Sbjct: 501 SHLTALRGLSLNSNRLTVLSH 521
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-28
Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 20/263 (7%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
+A L +L N S LL G + LP + +DL+ I+ + + L L +
Sbjct: 308 EAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG-S 229
L L DN LT ++ + + + LS N L + + + +S N L
Sbjct: 367 LDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLD 417
Query: 230 IPPGLGTLSKLQYLNVSNNSLAS-SIPAQLGDLDSLVDLDLSMNSLSGSVPSEL-----R 283
I L + LQ L ++ N +S S + SL L L N L + +EL
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
GL LQ + +N+L+ +L +F ++ L+ + L N T + L L +LDIS
Sbjct: 478 GLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDIS 534
Query: 344 RNNFTGPLPNSRSNVNTSTVELN 366
RN P P+ +++ + N
Sbjct: 535 RNQLLAPNPDVFVSLSVLDITHN 557
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 9e-28
Identities = 74/346 (21%), Positives = 124/346 (35%), Gaps = 36/346 (10%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
A + L L P +I + LP L+ LDL S I + P + L +L
Sbjct: 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100
Query: 170 SLYLSDNGLTGTI--PSSLGQLSVLSVLDLSRNSLTG-NIPTSFGLLKNLSSLDISSNYL 226
L L GL+ + L L+ LDLS+N + + SFG L +L S+D SSN +
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Query: 227 TGSIPPGLGTLS--KLQYLNVSNNSLASSIPAQLGDLD------SLVDLDLSMN------ 272
L L L + +++ NSL S + G L LD+S N
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220
Query: 273 ------SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP--TVSQLQIIVLRQNGFT 324
++S S L + G + + + N F S ++ + L
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 325 GPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN---MFYGGLTPVLG 381
V ++ L++L+++ N + + + LN+S N Y L
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338
Query: 382 RFRLVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVPNQRTL 422
+ +DL N+ + + L N L + ++
Sbjct: 339 KVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 9e-27
Identities = 67/345 (19%), Positives = 113/345 (32%), Gaps = 28/345 (8%)
Query: 107 RFAADALVNLTHLASFNASR-FLLPGSIPDWLGQQLPTLQALDLRSCSISGV-IPFSLGN 164
DA L HL L + D + L L LDL I + + S G
Sbjct: 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSV--LSVLDLSRNSLTGNIPTSFGLLKN------L 216
L +L S+ S N + L L LS L+ NSL + +G N L
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206
Query: 217 SSLDISSNYLT------------GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLD-- 262
LD+S N T S L + +++ L
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266
Query: 263 SLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNG 322
S+ LDLS + L+ L+ + N ++ ++ F + LQ++ L N
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNL 325
Query: 323 FTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGR 382
+ +P++ +D+ +N+ + + L++ N +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNAL--TTIHFIPS 382
Query: 383 FRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPNQRTLVDCSS 427
+ LSGN + +N L N L+N+ L+
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 5e-13
Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 9/159 (5%)
Query: 241 QYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300
+ +L + +P L++ L LS N + S L LQ +G+ +
Sbjct: 7 RIAFYRFCNL-TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62
Query: 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNT 360
+ F + L+I+ L + PD + L L + + + N
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 361 STVE-LNISQNMFY----GGLTPVLGRFRLVDLSGNYFE 394
+ L++S+N L + +D S N
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-31
Identities = 49/294 (16%), Positives = 104/294 (35%), Gaps = 22/294 (7%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+I + + Q + + S+ + + N+ L LS N L+ + L +
Sbjct: 1 AIHE-IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L +L+LS N L L L +LD+++NY+ L ++ L+ +NN++
Sbjct: 60 LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI- 111
Query: 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVS 311
S + ++ L+ N ++ + +Q + N + L +
Sbjct: 112 SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM 371
L+ + L+ N V+ +L+ LD+S N + + +++ N
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAF-MGPEFQSA-AGVTWISLRNNK 225
Query: 372 FYGGLTPVLGRF---RLVDLSGNYFEGRVPEYV---HSNASSLDSNCLQNVPNQ 419
+ L DL GN F + ++ ++ + Q
Sbjct: 226 L-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-25
Identities = 34/289 (11%), Positives = 76/289 (26%), Gaps = 9/289 (3%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ + + + L TL+ L+L+ I V L
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLK 194
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
+L LS N L + + ++ + L N L I + +NL D+ N
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252
Query: 230 IPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289
+ + + V+ ++ + L +L+
Sbjct: 253 TLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311
Query: 290 KFVIGNNFLSGNLSVNL---FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNN 346
+ G+ + L ++ + I + + V L+ +
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
Query: 347 FTGPLPNSR-SNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFE 394
+ N R ++ + T +L+ +E
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 12/173 (6%), Positives = 39/173 (22%), Gaps = 6/173 (3%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTG----TIPSSLG 187
+ ++ + + L L + G +
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333
Query: 188 QLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247
+ +D + I + +L+ L + G ++L
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393
Query: 248 NSLASSIPAQLGDLDSLVDLDLSMNSLS-GSVPSELRGLRSLQKFVIGNNFLS 299
+ + L L + V + +++ + + + +
Sbjct: 394 VGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 13/222 (5%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P IP Q + L IS V S NLT L+L N L ++
Sbjct: 26 VPVGIP-------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 189 LSVLSVLDLSRNSLTGNIP-TSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVS 246
L++L LDLS N+ ++ +F L L +L + L + PG L+ LQYL +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137
Query: 247 NNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN 305
+N+L ++P DL +L L L N +S RGL SL + ++ N ++ ++ +
Sbjct: 138 DNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195
Query: 306 LFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
F + +L + L N + P + L + L+ L ++ N +
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 7/208 (3%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
++L N ++ +S L++L L N L +F L L LD+S N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 226 LTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSE-L 282
S+ P L +L L++ L + L +L L L N+L ++P +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149
Query: 283 RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342
R L +L + N +S ++ F + L ++L QN P + +L L +
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 343 SRNNFTGPLPNSRSNVNTSTVELNISQN 370
NN + LP + L ++ N
Sbjct: 209 FANNLSA-LPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
L L + + R L + L + L LQ L L+ ++ + + +L NLT
Sbjct: 98 PATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
L+L N ++ + L L L L +N + P +F L L +L + +N L+ +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215
Query: 230 IPPG-LGTLSKLQYLNVSNNSL 250
+P L L LQYL +++N
Sbjct: 216 LPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 31/209 (14%)
Query: 214 KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
+ + L ++P G+ + Q + + N ++ A +L L L N
Sbjct: 11 EPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
Query: 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWS 333
L+ + GL L++ + +N ++ F + +L + L + G P +
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 334 MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYF 393
+ L+ L + N + + F LG + L GN
Sbjct: 128 LAALQYLYLQDNALQ-----------------ALPDDTFRD-----LGNLTHLFLHGNRI 165
Query: 394 EGRVPEYVHSNASSL-----DSNCLQNVP 417
VPE SL N + +V
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVAHVH 193
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-30
Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 8/212 (3%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
+ L L+ L L I + + L NL +L L DN LT + LS L L L
Sbjct: 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144
Query: 199 RNSLTGNIPT-SFGLLKNLSSLDISS-NYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIP 255
N + +IP+ +F + +L LD+ L+ I G LS L+YLN++ +L IP
Sbjct: 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNL-REIP 201
Query: 256 AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQI 315
L L L +LDLS N LS P +GL LQK + + + + N F + L
Sbjct: 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259
Query: 316 IVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
I L N T P D+ + L + + N +
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-30
Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 14/246 (5%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P I + L+L I + S +L +L L LS N + +
Sbjct: 58 VPDGIS-------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSN 247
L+ L+ L+L N LT +F L L L + +N + SIP + L+ L++
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169
Query: 248 NSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
S I L +L L+L+M +L +P+ L L L + + N LS +
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGS 226
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELN 366
F + LQ + + Q+ + ++ L ++++ NN T LP+ ++
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIH 285
Query: 367 ISQNMF 372
+ N +
Sbjct: 286 LHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 97 RRTRLGSQNP--RFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSI 154
RR LG + A L++L N + L IP+ L L LDL +
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP--LIKLDELDLSGNHL 219
Query: 155 SGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLK 214
S + P S L +L L++ + + ++ L L ++L+ N+LT F L
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279
Query: 215 NLSSLDISSN 224
+L + + N
Sbjct: 280 HLERIHLHHN 289
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 3e-30
Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 17/250 (6%)
Query: 103 SQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSL 162
S++ + V + + +F L + L ++ + + + + V
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 163 GNLTNLTSLYLSDNGLTGTI---PSSLGQLSVLSVLDLSRNSLT--GNIPTSFGLLKNLS 217
+L +L L LS+N + + G L L LS+N L LKNL+
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390
Query: 218 SLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS 277
SLDIS N +P K+++LN+S+ + + +L LD+S N+L S
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKT--CIPQTLEVLDVSNNNLD-S 445
Query: 278 VPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQL 337
L L+ L I N L L L ++ + +N P + + L
Sbjct: 446 FSLFLPRLQEL---YISRNKLK-TLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 338 RLLDISRNNF 347
+ + + N +
Sbjct: 500 QKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 4e-28
Identities = 61/313 (19%), Positives = 102/313 (32%), Gaps = 30/313 (9%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
SIP L +++LDL I+ + L NL L L + + + L
Sbjct: 19 SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSL 250
L LDLS N L+ + FG L +L L++ N L L+ LQ L + N
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 251 ASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPT 309
S I L SL +L++ SL L+ +R + + + + L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADI 194
Query: 310 VSQLQIIVLRQNGFTGPPPDV-----------LWSMPQLRLLDISRNNFTGPLPNSRSNV 358
+S ++ + LR + L D S N L
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254
Query: 359 NTSTVELNISQ----NMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASS------- 407
+ ++ N + LG+ V + + Y S S
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 408 --LDSNCLQNVPN 418
++++ + VP
Sbjct: 315 ITVENSKVFLVPC 327
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-27
Identities = 49/262 (18%), Positives = 95/262 (36%), Gaps = 19/262 (7%)
Query: 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG 177
L + + + T++ L + + + L + + + ++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 178 LTGTIPSSLGQLSVLSVLDLSRNSLTGNI---PTSFGLLKNLSSLDISSNYLTGSIPPGL 234
+ S L L LDLS N + G +L +L +S N+L S+
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTG 380
Query: 235 GT---LSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
L L L++S N+ +P + + L+LS + V + + ++L+
Sbjct: 381 EILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVL 436
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351
+ NN L + S+ L +LQ + + +N P L P L ++ ISRN
Sbjct: 437 DVSNNNLD-SFSLFL----PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVP 489
Query: 352 PNSRSNVNTSTVELNISQNMFY 373
TS ++ + N +
Sbjct: 490 DGIFDR-LTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-23
Identities = 62/361 (17%), Positives = 118/361 (32%), Gaps = 58/361 (16%)
Query: 109 AADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNL 168
NLT+L + I L +L L++++ S+ SL ++ ++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL--------- 219
L L + + LS + L+L +L + + + S +
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234
Query: 220 -------------------------DISSNYLTGSIPPGLGTLSK--------LQYLNVS 246
D + N L P +S+ ++ L++
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN- 305
L + L+ + + + + + S + L+SL+ + N + N
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 306 -LFPTVSQLQIIVLRQNGFT--GPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTST 362
LQ +VL QN ++L ++ L LDISRN F P+P+S
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-EKM 412
Query: 363 VELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVP 417
LN+S T + ++D+S N + L N L+ +P
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLKTLP 467
Query: 418 N 418
+
Sbjct: 468 D 468
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 3e-18
Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 25/202 (12%)
Query: 192 LSVLDLSRNSLT---GNIPTS------------------FGLLKNLSSLDISSNYLTGSI 230
V D S T + + NL L + S+ + +I
Sbjct: 7 SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65
Query: 231 PPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG-SVPSELRGLRSL 288
+L L++L++S+N L+S + G L SL L+L N V S L +L
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 289 QKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
Q IGN + F ++ L + ++ L S+ + L + +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 349 GPLPNSRSNVNTSTVELNISQN 370
L +++ L +
Sbjct: 186 FLLEIFADILSSVR-YLELRDT 206
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 12/233 (5%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT 203
Q L+L +C F L +L L + N S + L L LDLSRN L+
Sbjct: 306 WQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLS 360
Query: 204 --GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ--LG 259
G S +L LD+S N + ++ L +L++L+ +++L +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFL 418
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L +L+ LD+S + GL SL+ + N N ++F + L + L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF 372
Q P S+ L++L+++ N +P+ + TS ++ + N +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-29
Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 28/309 (9%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P ++P + + LDL + + +S + L L LS + +
Sbjct: 22 IPDNLP-------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248
LS LS L L+ N + +F L +L L L +G L L+ LNV++N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 249 SLAS-SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN----LS 303
+ S +P +L +L LDLS N + ++LR L + + + LS N +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQ 193
Query: 304 VNLFPTVSQLQIIVLRQNGFTGP-PPDVLWSMPQLRLLDISRNNFTG-------PLPNSR 355
F + L + LR N + + + L + + F
Sbjct: 194 PGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 356 SNVNTSTVELNISQNMFYG----GLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLD-- 409
N + E ++ +Y L L L E + L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312
Query: 410 SNCLQNVPN 418
+ P
Sbjct: 313 NCKFGQFPT 321
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 9e-29
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 6/199 (3%)
Query: 138 GQQLPTLQALDLRSCSIS--GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195
LP+L+ LDL +S G S T+L L LS NG+ T+ S+ L L L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401
Query: 196 DLSRNSLTGNIPTS-FGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI 254
D ++L S F L+NL LDIS + + LS L+ L ++ NS +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 255 PAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313
+L +L LDLS L P+ L SLQ + +N L ++ +F ++ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 314 QIIVLRQNGFTGPPPDVLW 332
Q I L N + P + +
Sbjct: 521 QKIWLHTNPWDCSCPRIDY 539
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-25
Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 19/258 (7%)
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG 228
+ + IP +L LDLS N L SF L LD+S +
Sbjct: 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 229 SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSL 288
+LS L L ++ N + S L SL L +L+ + L++L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 289 QKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL----LDISR 344
++ + +N + F ++ L+ + L N L + Q+ L LD+S
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 345 NNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV----LGRFRLVDLSGNYFEGRVPEY 400
N P + + L + N + L + L F
Sbjct: 187 NPMNFIQPGAFKEIRLHK--LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----- 239
Query: 401 VHSNASSLDSNCLQNVPN 418
N D + L+ + N
Sbjct: 240 -EGNLEKFDKSALEGLCN 256
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 1e-17
Identities = 48/333 (14%), Positives = 94/333 (28%), Gaps = 70/333 (21%)
Query: 100 RLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGV-- 157
+ L L F G++ + L L L + ++ +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVH-RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 158 ----IPFSLGNLTNLTSLYLSDNGLTGTIPSS-LGQLSVLSVLDLSRNSLTGNIPTSFGL 212
I LTN++S L + S L +++
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------TLK 323
Query: 213 LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA--SSIPAQLGDLDSLVDLDLS 270
LK+L L +SN + + L L++L++S N L+ SL LDLS
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 271 MNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV 330
N + ++ S GL L+ ++ L ++F ++ L + + +
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 331 LWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSG 390
+ L +L ++G
Sbjct: 441 FNGLSSLEVLK----------------------------------------------MAG 454
Query: 391 NYFEGRVPEYVHSNASSL-----DSNCLQNVPN 418
N F+ + + +L L+ +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 96 FRRTRLGSQNPRFAADALVNLTHL-ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSI 154
F+ + L + +L NL +L S +R G L +L+ L + S
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSF 457
Query: 155 SGVI-PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLL 213
P L NLT L LS L P++ LS L VL+++ N L F L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 214 KNLSSLDISSNYLTGSIP 231
+L + + +N S P
Sbjct: 518 TSLQKIWLHTNPWDCSCP 535
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 29/276 (10%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P +P P LDL++ I+ + NL NL +L L +N ++ P +
Sbjct: 46 VPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSN 247
L L L LS+N L +P + K L L + N +T + L+++ + +
Sbjct: 99 LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGT 154
Query: 248 NSLASS-IPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN 305
N L SS I + L + ++ +++ ++P L SL + + N ++ +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAA 210
Query: 306 LFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVEL 365
++ L + L N + L + P LR L ++ N +P ++ + +
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD-HKYIQVV 268
Query: 366 NISQNMF---------YGGLTPVLGRFRLVDLSGNY 392
+ N G + V L N
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 23/249 (9%)
Query: 109 AADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNL 168
+ A L L S+ L +P+ + TLQ L + I+ V L +
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQM 147
Query: 169 TSLYLSDNGLTGTI--PSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
+ L N L + + + LS + ++ ++T IP GL +L+ L + N +
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKI 204
Query: 227 TGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRG 284
T + L L+ L L +S NS+ S++ L + L +L L+ N L VP L
Sbjct: 205 T-KVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFPTV------SQLQIIVLRQN--GFTGPPPDVLWSMPQ 336
+ +Q + NN +S + N F + + L N + P +
Sbjct: 262 HKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320
Query: 337 LRLLDISRN 345
+ +
Sbjct: 321 RAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 36/259 (13%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
+ L L +N +T L L L L N ++ P +F L L L +S N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 226 LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSV--PSELR 283
L +P + LQ L V N + + L+ ++ ++L N L S +
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
G++ L I + ++ + L P+ L + L N T L + L L +S
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 344 RNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHS 403
N+ + + R + L+ N +VP +
Sbjct: 225 FNSIS-----------------AVDNGSLAN-----TPHLRELHLNNNKLV-KVPGGLAD 261
Query: 404 NAS----SLDSNCLQNVPN 418
+ L +N + + +
Sbjct: 262 HKYIQVVYLHNNNISAIGS 280
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 62/260 (23%), Positives = 96/260 (36%), Gaps = 42/260 (16%)
Query: 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
+L + SD GL +P L ++LDL N +T F LKNL +L + +N +
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 227 TGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE-LRG 284
+ I PG L KL+ L +S N L +P ++ +L +L + N ++ V G
Sbjct: 89 S-KISPGAFAPLVKLERLYLSKNQL-KELPEKM--PKTLQELRVHENEIT-KVRKSVFNG 143
Query: 285 LRSLQKFVIGNNFL-SGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
L + +G N L S + F + +L I + T P + P L L +
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLD 200
Query: 344 RNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHS 403
N T + G L + LS N V +
Sbjct: 201 GNKIT-----------------KVDAASLKG-----LNNLAKLGLSFNSIS-AVDNGSLA 237
Query: 404 NASSL-----DSNCLQNVPN 418
N L ++N L VP
Sbjct: 238 NTPHLRELHLNNNKLVKVPG 257
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-29
Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 8/219 (3%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
I + L L+ L L SI + + L +L +L L DN LT + LS
Sbjct: 89 MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148
Query: 192 LSVLDLSRNSLTGNIPT-SFGLLKNLSSLDISS-NYLTGSIPPG-LGTLSKLQYLNVSNN 248
L L L N + +IP+ +F + +L LD+ L I G L L+YLN+
Sbjct: 149 LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMC 206
Query: 249 SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308
++ +P L L L +L++S N P GL SL+K + N+ +S + N F
Sbjct: 207 NI-KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFD 263
Query: 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
++ L + L N + P D+ + L L + N +
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 7e-29
Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 14/246 (5%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P IP + L+L +I + + +L +L L L N + +
Sbjct: 69 VPQGIP-------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSN 247
L+ L+ L+L N LT +F L L L + +N + SIP + L L++
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180
Query: 248 NSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
I L +L L+L M ++ +P+ L L L++ + N +
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGS 237
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELN 366
F +S L+ + + + + + + L L+++ NN + LP+ VEL+
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELH 296
Query: 367 ISQNMF 372
+ N +
Sbjct: 297 LHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%)
Query: 97 RRTRLGSQNP--RFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSI 154
R LG + A L +L N + +P+ L L+ L++
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP--LVGLEELEMSGNHF 230
Query: 155 SGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLK 214
+ P S L++L L++ ++ ++ ++ L+ L L+L+ N+L+ F L+
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290
Query: 215 NLSSLDISSN 224
L L + N
Sbjct: 291 YLVELHLHHN 300
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 9e-29
Identities = 62/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%)
Query: 108 FAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTN 167
+ + L + + +P L ++ L+L I + ++
Sbjct: 36 YFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 94
Query: 168 LTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT 227
+ LY+ N + P + +L+VL L RN L+ F L++L +S+N L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 228 GSIPPGLGT-LSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLR 286
I + LQ L +S+N L + + L + SL ++S N L S L
Sbjct: 155 -RIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLL-----STLAIPI 205
Query: 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNN 346
++++ +N ++ + + +L I+ L+ N T L + P L +D+S N
Sbjct: 206 AVEELDASHNSIN-VVRGPVN---VELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNE 259
Query: 347 FTGPLPNSRSNVNTSTVELNISQN-------MFYGGLTPVLGRFRLVDLSGNYFEGRVPE 399
+ L IS N + +++DLS N+ V
Sbjct: 260 LEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHLL-HVER 312
Query: 400 YVHSNAS----SLDSNCLQNVP 417
LD N + +
Sbjct: 313 NQPQFDRLENLYLDHNSIVTLK 334
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 20/239 (8%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
N L + + S L I D Q +LQ L L S ++ L + +L
Sbjct: 134 RGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLF 189
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
+S N L+ +L + LD S NS+ + + L+ L + N LT
Sbjct: 190 HANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNLTD- 240
Query: 230 IPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289
L L +++S N L + + L L +S N L ++ + + +L+
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298
Query: 290 KFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
+ +N L ++ N +L+ + L N L+ L +S N++
Sbjct: 299 VLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 32/291 (10%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
Q + + + F L N + ++ + + L + +L+L+
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQ 257
+ +F + L + N + +PP + L L + N L SS+P
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SSLPRG 135
Query: 258 L-GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQII 316
+ + L L +S N+L + SLQ + +N L+ ++ ++L P L
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP---SLFHA 191
Query: 317 VLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGL 376
+ N + L + LD S N+ + VN L + N L
Sbjct: 192 NVSYNLLS-----TLAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNN----L 238
Query: 377 TPV-----LGRFRLVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVP 417
T VDLS N E ++ + L +N L +
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALN 288
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200
++ LD SI+ V LT L L N LT + L L +DLS N
Sbjct: 204 PIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 258
Query: 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGD 260
L + F ++ L L IS+N L ++ + L+ L++S+N L +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQ 316
Query: 261 LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQI 315
D L +L L NS+ S L++L + +N N LF V++ +
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRALFRNVARPAV 368
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-19
Identities = 40/240 (16%), Positives = 83/240 (34%), Gaps = 12/240 (5%)
Query: 181 TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSK 239
I S+L V + + + L N + ++ + +P L + +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70
Query: 240 LQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299
++ LN+++ + ++ L + N++ P + + L V+ N LS
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Query: 300 GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVN 359
+L +F +L + + N D + L+ L +S N T + ++
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLI 185
Query: 360 TSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLD--SNCLQNVP 417
S N+S N+ + +D S N V V+ + L N L +
Sbjct: 186 PSLFHANVSYNLL--STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTA 242
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 5/209 (2%)
Query: 212 LLKNLSSLDISSNYLTGSIPPGL--GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDL 269
L + D+ + T + G TL+ + + N+++ A L + L+L
Sbjct: 17 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76
Query: 270 SMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD 329
+ + ++QK +G N + L ++F V L ++VL +N + P
Sbjct: 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Query: 330 VLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLS 389
+ + P+L L +S NN + + TS L +S N ++ ++S
Sbjct: 136 IFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194
Query: 390 GNYFEGRVPEYVHSNASSLDSNCLQNVPN 418
N + + N + V
Sbjct: 195 YNLLS-TLAIPIAVEELDASHNSINVVRG 222
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 11/179 (6%)
Query: 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
I + L D+ + M + E L + + N+ + L L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELN 366
+ Q++++ L ++ L + N LP L
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLV 123
Query: 367 ISQN---MFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVP 417
+ +N G+ + + +S N E R+ + +SL SN L +V
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD 181
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 70/322 (21%), Positives = 113/322 (35%), Gaps = 47/322 (14%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQL------------PTLQALDLRSCSISGVI 158
N+ + + + P G+Q L+L + +S +
Sbjct: 28 VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86
Query: 159 PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218
P +L SL S N LT +P L L V + + +L+ P L
Sbjct: 87 PELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEY 135
Query: 219 LDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSV 278
L +S+N L +P L S L+ ++V NNSL +P SL + N L
Sbjct: 136 LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSL-KKLPDLPP---SLEFIAAGNNQL--EE 187
Query: 279 PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR 338
EL+ L L NN L L L+ IV N P L ++P L
Sbjct: 188 LPELQNLPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNILEELPE--LQNLPFLT 240
Query: 339 LLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVP 398
+ N LP+ ++ LN+ N L + +D+S N F +
Sbjct: 241 TIYADNNLLKT-LPDLPPSLE----ALNVRDNYL-TDLPELPQSLTFLDVSENIFS-GLS 293
Query: 399 EYVHSNAS-SLDSNCLQNVPNQ 419
E + + SN ++++ +
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDL 315
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 6e-25
Identities = 51/244 (20%), Positives = 87/244 (35%), Gaps = 40/244 (16%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV----- 194
LQ S +++ +P N+ + T Y + + P G+ ++V
Sbjct: 9 SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 195 --------LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246
L+L+ L+ ++P +L SL S N LT +P +L L N +
Sbjct: 68 CLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122
Query: 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
+L+ P L L +S N L +P EL+ L+ + NN L L
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-----KL 168
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELN 366
L+ I N P L ++P L + N+ LP+ ++ +
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKK-LPDLPLSLE----SIV 221
Query: 367 ISQN 370
N
Sbjct: 222 AGNN 225
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 50/258 (19%), Positives = 94/258 (36%), Gaps = 41/258 (15%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
L NL L + A LL ++PD L+AL++R ++ +P +LT L
Sbjct: 233 LQNLPFLTTIYADNNLL-KTLPDLPPS----LEALNVRDNYLTD-LPELPQSLTFLDVSE 286
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
+GL+ P+ L L+ S N + ++ L +L L++S+N L +P
Sbjct: 287 NIFSGLSELPPN-------LYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLI-ELPA 334
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
+L+ L S N L + +P +L L + N L P + L+
Sbjct: 335 LPP---RLERLIASFNHL-AEVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLR--- 383
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352
+ + L+ + + N P + L ++ P
Sbjct: 384 ------MNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDPYE 433
Query: 353 NSRSNVNTSTVELNISQN 370
+ T +E ++ ++
Sbjct: 434 FAHE--TTDKLEDDVFEH 449
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 5e-17
Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 33/179 (18%)
Query: 137 LGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196
L + P L L+ S I + +L L +S+N L +P+ +L L
Sbjct: 292 LSELPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLI-ELPALPPRLERL---I 343
Query: 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL----------------SKL 240
S N L +P L +NL L + N L P ++ L
Sbjct: 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNL 398
Query: 241 QYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299
+ L+V N L P S+ DL ++ + L+ V ++
Sbjct: 399 KQLHVETNPL-REFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 19/172 (11%)
Query: 521 GESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLEL 580
G + L + + G G +++ L V +K +Q ++ E+
Sbjct: 11 GVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNE-YVAVKIFPIQDKQSWQNEYEV 69
Query: 581 DFFSKVSHARLVPLLGHCMEREN---EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWI 637
+ H ++ +G + + +L+ + G LS L + W
Sbjct: 70 YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANV--------VSWN 121
Query: 638 TRLKIAIGAAEGLSYLHHE-------CTLPFVHRDVQASSILLDDKFEVRLG 682
IA A GL+YLH + HRD+++ ++LL + +
Sbjct: 122 ELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA 173
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-27
Identities = 60/287 (20%), Positives = 108/287 (37%), Gaps = 34/287 (11%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+P L ++ L+L I + ++ + LY+ N + P + +
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSL 250
L+VL L RN L+ F L++L +S+N L I + LQ L +S+N L
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 183
Query: 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310
+ + L + SL ++S N L S L ++++ +N ++ + +
Sbjct: 184 -THVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV-- 232
Query: 311 SQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
+L I+ L+ N T L + P L +D+S N + L IS N
Sbjct: 233 -ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNN 288
Query: 371 -------MFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDS 410
+ +++DLS N+ +V N D
Sbjct: 289 RLVALNLYGQP-----IPTLKVLDLSHNHL-----LHVERNQPQFDR 325
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 20/239 (8%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
N L + + S L I D Q +LQ L L S ++ V L + +L
Sbjct: 140 RGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 195
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
+S N L+ +L + LD S NS+ + + L+ L + N LT
Sbjct: 196 HANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNLTD- 246
Query: 230 IPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289
L L +++S N L + + L L +S N L ++ + + +L+
Sbjct: 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304
Query: 290 KFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
+ +N L ++ N +L+ + L N L+ L +S N++
Sbjct: 305 VLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 54/291 (18%), Positives = 97/291 (33%), Gaps = 32/291 (10%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
Q + + + F L N + ++ + + L + +L+L+
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQ 257
+ +F + L + N + +PP + L L + N L SS+P
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SSLPRG 141
Query: 258 L-GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQII 316
+ + L L +S N+L + SLQ + +N L+ ++ ++L P L
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP---SLFHA 197
Query: 317 VLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGL 376
+ N + L + LD S N+ R VN L + N L
Sbjct: 198 NVSYNLLS-----TLAIPIAVEELDASHNSIN----VVRGPVNVELTILKLQHNN----L 244
Query: 377 TPV-----LGRFRLVDLSGNYFEGRVPEYVHSNASSL-----DSNCLQNVP 417
T VDLS N E ++ + L +N L +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALN 294
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200
++ LD SI+ V LT L L N LT + L L +DLS N
Sbjct: 210 PIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264
Query: 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGD 260
L + F ++ L L IS+N L ++ + L+ L++S+N L +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQ 322
Query: 261 LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ 320
D L +L L NS+ S L++L + +N N LF V++ + Q
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRALFRNVARPAVDDADQ 379
Query: 321 N 321
+
Sbjct: 380 H 380
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 3e-18
Identities = 40/240 (16%), Positives = 83/240 (34%), Gaps = 12/240 (5%)
Query: 181 TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSK 239
I S+L V + + + L N + ++ + +P L + +
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76
Query: 240 LQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299
++ LN+++ + ++ L + N++ P + + L V+ N LS
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136
Query: 300 GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVN 359
+L +F +L + + N D + L+ L +S N T + ++
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLI 191
Query: 360 TSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLD--SNCLQNVP 417
S N+S N+ + +D S N V V+ + L N L +
Sbjct: 192 PSLFHANVSYNLL--STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTA 248
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 5/210 (2%)
Query: 212 LLKNLSSLDISSNYLTGSIPPGL--GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDL 269
L + D+ + T + G TL+ + + N+++ A L + L+L
Sbjct: 23 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82
Query: 270 SMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD 329
+ + ++QK +G N + L ++F V L ++VL +N + P
Sbjct: 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 330 VLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLS 389
+ + P+L L +S NN + + TS L +S N ++ ++S
Sbjct: 142 IFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200
Query: 390 GNYFEGRVPEYVHSNASSLDSNCLQNVPNQ 419
N + + N + V
Sbjct: 201 YNLLS-TLAIPIAVEELDASHNSINVVRGP 229
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 12/190 (6%)
Query: 237 LSKLQYLNV-SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGN 295
+ Q NV I + L D+ + M + E L + + N
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60
Query: 296 NFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSR 355
+ + L L + Q++++ L ++ L + N LP
Sbjct: 61 STMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHV 118
Query: 356 SNVNTSTVELNISQN---MFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSL---- 408
L + +N G+ + + +S N E R+ + +SL
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 177
Query: 409 -DSNCLQNVP 417
SN L +V
Sbjct: 178 LSSNRLTHVD 187
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 4e-27
Identities = 51/222 (22%), Positives = 86/222 (38%), Gaps = 17/222 (7%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ 188
+P I P LDL++ IS + L +L +L L +N ++ +
Sbjct: 48 VPKEIS-------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSN 247
L L L +S+N L IP L +L L I N + +P G L + + +
Sbjct: 101 LRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156
Query: 248 NSLASS-IPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
N L +S D L L +S L+ +P +L +L + + +N + + +
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELED 212
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
S+L + L N L +P LR L + N +
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 14/163 (8%)
Query: 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202
L L + ++G+ L L+L N + L + S L L L N +
Sbjct: 173 KLNYLRISEAKLTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 203 TGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ----- 257
S L L L + +N L+ +P GL L LQ + + N++ + +
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPV 287
Query: 258 --LGDLDSLVDLDLSMNSLSGSV--PSELRGLRSLQKFVIGNN 296
+ L N + P+ R + GN
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 11/141 (7%)
Query: 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200
TL L L I + L + L L L N + SL L L L L N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251
Query: 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-------LGTLSKLQYLNVSNNSLA-S 252
L+ +P LK L + + +N +T + + +++ NN +
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309
Query: 253 SIPAQL-GDLDSLVDLDLSMN 272
+ + + +
Sbjct: 310 EVQPATFRCVTDRLAIQFGNY 330
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 9e-27
Identities = 76/314 (24%), Positives = 121/314 (38%), Gaps = 54/314 (17%)
Query: 125 SRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS 184
R + + L L ++ ++ +P L ++T+L + DN LT ++P+
Sbjct: 26 GRAAVVQKMRACLNNGNAVL---NVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA 78
Query: 185 SLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL------- 237
+ L L++S N LT ++P L LS +L ++P GL L
Sbjct: 79 LPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQL 133
Query: 238 -------SKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290
LQ L+VS+N L +S+PA L L N L+ S+P GL+ L
Sbjct: 134 TSLPVLPPGLQELSVSDNQL-ASLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQELS- 187
Query: 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350
+S N +L S+L + N T P L+ L +S N T
Sbjct: 188 -------VSDNQLASLPTLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS- 235
Query: 351 LPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNAS---- 406
LP S + EL +S N L + + + N R+PE + +S
Sbjct: 236 LPVLPSELK----ELMVSGNRL-TSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289
Query: 407 SLDSNCLQNVPNQR 420
+L+ N L Q
Sbjct: 290 NLEGNPLSERTLQA 303
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 8e-26
Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 48/269 (17%)
Query: 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSD 175
H+ + L S+P + L+ L++ ++ +P L L+
Sbjct: 60 PAHITTLVIPDNNLT-SLPALPPE----LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113
Query: 176 NGLTGTIPSSLGQLSV--------------LSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221
L +PS L +L + L L +S N L ++P L L
Sbjct: 114 THLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPS---ELCKLWA 168
Query: 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE 281
+N LT S+P LQ L+VS+N L +S+P +L L + + SL P+
Sbjct: 169 YNNQLT-SLPMLPS---GLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSL----PAL 219
Query: 282 LRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLD 341
GL+ L +SGN +L S+L+ +++ N T P L L
Sbjct: 220 PSGLKELI--------VSGNRLTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLS 267
Query: 342 ISRNNFTGPLPNSRSNVNTSTVELNISQN 370
+ RN T LP S + +S +N+ N
Sbjct: 268 VYRNQLTR-LPESLIH-LSSETTVNLEGN 294
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 2e-18
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
S+P + L L + ++ +P + L L +S N LT ++P +L
Sbjct: 195 SLPTLPSE----LYKLWAYNNRLT-SLP---ALPSGLKELIVSGNRLT-SLPVLPSELKE 245
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L +S N LT ++P L SL + N LT +P L LS +N+ N L+
Sbjct: 246 L---MVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297
Query: 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289
L ++ S + + S R R+L
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 6e-26
Identities = 55/277 (19%), Positives = 89/277 (32%), Gaps = 23/277 (8%)
Query: 90 GINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQL--PTLQAL 147
G ++ + + D + +L+ L +P I + L LQ L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 148 DLRSCSISGVIPFSLGNLT--NLTSLYLSDNGLTG--TIPSSLGQLSV--LSVLDLSRNS 201
L + ++G P L T +L L L + + L Q L VL +++
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 202 LTGNIPTSFGLLKNLSSLDISSNYLTGSIP----PGLGTLSKLQYLNVSNNSLAS---SI 254
+ LS+LD+S N G LQ L + N + +
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220
Query: 255 PAQLGDLDSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313
A L LDLS NSL + + L + L + L +L
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPA---KL 276
Query: 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350
++ L N P +PQ+ L + N F
Sbjct: 277 SVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 2e-19
Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 17/270 (6%)
Query: 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS 201
P +C + + G + L D + + + L L +
Sbjct: 20 PKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAAR 79
Query: 202 LTGNIPTSFGLLKNLSS---LDISSNYLTGSIPPGLG--TLSKLQYLNVSNNSLASSIPA 256
+ I + +S L + + +TG+ PP L T L LN+ N S ++ A
Sbjct: 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDA 138
Query: 257 QLGDLDSLVDLDLSMNSLSGSV-----PSELRGLRSLQKFVIGNNFLSGNLSVN---LFP 308
L +L + L + S++ + ++R +L + +N G +
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198
Query: 309 TVSQLQIIVLRQNGFT---GPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVEL 365
LQ++ LR G G + + QL+ LD+S N+ + + L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 366 NISQNMFYGGLTPVLGRFRLVDLSGNYFEG 395
N+S + + ++DLS N +
Sbjct: 259 NLSFTGLKQVPKGLPAKLSVLDLSYNRLDR 288
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 6e-26
Identities = 59/279 (21%), Positives = 107/279 (38%), Gaps = 29/279 (10%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS-SLG 187
+P + +++LDL + I+ + L NL +L L+ NG+ TI S
Sbjct: 46 IPSGLT-------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFS 97
Query: 188 QLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSNYLTGSIPPG--LGTLSKLQYLN 244
L L LDLS N L+ N+ +S F L +L+ L++ N ++ L+KLQ L
Sbjct: 98 SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILR 155
Query: 245 VSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303
V N + I + L L +L++ + L P L+ ++++ ++ L
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214
Query: 304 VNLFPTVSQLQIIVLRQNGFTGPPP--------DVLWSMPQLRLLDISRNNFTGPLPNSR 355
S ++ + LR + L R + I+ + +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274
Query: 356 SNVNTSTVELNISQN---MFYGGLTPVLGRFRLVDLSGN 391
+ +EL S+N G+ L + + L N
Sbjct: 275 Q--ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 54/252 (21%), Positives = 90/252 (35%), Gaps = 13/252 (5%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
I + Q+ LQAL L S I+ + S +L +L L LS N L+ S LS
Sbjct: 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 192 LSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNS 249
L+ L+L N TS F L L L + + I L+ L+ L + +
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 250 LASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGN------- 301
L S P L + ++ L L M + S++ + + L
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244
Query: 302 LSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTS 361
N + + + +L + L L+ SRN +P+ + TS
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKS-VPDGIFDRLTS 302
Query: 362 TVELNISQNMFY 373
++ + N +
Sbjct: 303 LQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 11/174 (6%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+LT L I L L+ L++ + + P SL ++ N++
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPT--------SFGLLKNLSSLDI 221
L L + + S + L+L L + S ++ I
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSL 274
+ L + L +S L L S N L S+P L SL + L N
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 17/219 (7%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
+L+ S++ + L ++ + +++ + ++ + L ++ L L+
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N LT +I LKNL L + N + + L L KL+ L++ +N + S I L
Sbjct: 75 NKLT-DI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGI-SDING-LV 128
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L L L L N + + + L L L + +N +S + +++LQ + L
Sbjct: 129 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLS 183
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNV 358
+N + L + L +L++ N +SN+
Sbjct: 184 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-23
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 24/235 (10%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
+L ++ + + I V + L N+T L+L+ N LT L L L L L
Sbjct: 41 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDE 96
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N + ++ +S LK L SL + N ++ I L L +L+ L + NN + + I L
Sbjct: 97 NKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI-TDITV-LS 150
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L L L L N +S + L GL LQ + N +S + + L ++ L
Sbjct: 151 RLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELF 205
Query: 320 QNGFTGPPPD---VLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM 371
P + L ++ D S P S+ + N+ ++
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVT-----PEIISDDGDYE-KPNVKWHL 254
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 99.4 bits (247), Expect = 9e-22
Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 24/229 (10%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT 203
+ S I + P L +T + +L+ + + + + +
Sbjct: 1 MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 204 GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDS 263
++ L N++ L ++ N LT I P L L L +L + N + + + L DL
Sbjct: 57 -SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKI-KDLSS-LKDLKK 110
Query: 264 LVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGF 323
L L L N + S + L L L+ +GNN ++ + + +++L + L N
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI 165
Query: 324 TGPPPDVLWSMPQLRLLDISRNNFT--GPLPNSRSNVNTSTVELNISQN 370
+ P L + +L+ L +S+N+ + L + L +
Sbjct: 166 SDIVP--LAGLTKLQNLYLSKNHISDLRALAG-----LKNLDVLELFSQ 207
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 1e-20
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 15/216 (6%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
Q LP + L L ++ + P L NL NL L+L +N + + SSL L L L L
Sbjct: 62 QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLE 117
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
N ++ +I L L SL + +N +T I L L+KL L++ +N + S I L
Sbjct: 118 HNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI-SDIVP-L 171
Query: 259 GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVL 318
L L +L LS N + S L GL++L + + N +N + +
Sbjct: 172 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKN 228
Query: 319 RQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354
+ P+++ ++ + S
Sbjct: 229 TDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 7/117 (5%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170
L LT L + + + I L LQ L L IS + L L NL
Sbjct: 147 TVLSRLTKLDTLSLEDNQI-SDIVPL--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDV 201
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT 227
L L + L V + + + SL S + ++ +
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD--GDYEKPNVKWHLPE 256
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-25
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
+ ++ L + + + P + L+NL L + +T +L L+ L++LD+S
Sbjct: 63 EYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
++ +I T L ++S+D+S N I P L TL +L+ LN+ + + +
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--I 177
Query: 259 GDLDSLVDLDLSMNSLSG 276
D L L ++ G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 8e-21
Identities = 33/190 (17%), Positives = 74/190 (38%), Gaps = 11/190 (5%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
+ L + + Q++ L+ + L+ ++T ++ T N+ L
Sbjct: 17 IPDSTFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDL 71
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
I++ + T + P + LS L+ L + + S L L SL LD+S ++ S+
Sbjct: 72 TINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+++ L + + N ++ T+ +L+ + ++ +G + P+L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185
Query: 340 LDISRNNFTG 349
L G
Sbjct: 186 LYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 23/157 (14%), Positives = 58/157 (36%), Gaps = 11/157 (7%)
Query: 237 LSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNN 296
+ +S A+ A ++SL + L+ +++ + + +++ I N
Sbjct: 22 FKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNI 76
Query: 297 FLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS 356
+ + N +S L+ + + T L + L LLDIS + + +
Sbjct: 77 HAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 357 NVNTSTVELNISQNMFYGGLTPV--LGRFRLVDLSGN 391
+++S N + P+ L + +++ +
Sbjct: 134 T-LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 23/260 (8%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
+L + + +A + +I Q L L L+L+ I+ + P NLT +T L
Sbjct: 37 QADLDGITTLSAFGTGV-TTIEGV--QYLNNLIGLELKDNQITDLAPLK--NLTKITELE 91
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
LS N L S++ L + LDL+ +T P L NL L + N +T +I P
Sbjct: 92 LSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP 146
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
L L+ LQYL++ N + S + L +L L L N +S S L L +L +
Sbjct: 147 -LAGLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADDNKISDI--SPLASLPNLIEVH 201
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL- 351
+ NN +S V+ S L I+ L T P L + ++ + P+
Sbjct: 202 LKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGPSGAPIA 255
Query: 352 PNSRSNVNTSTVELNISQNM 371
P + S+ N + N++ N+
Sbjct: 256 PATISD-NGTYASPNLTWNL 274
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 17/209 (8%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
L + +++ + + +L +T+L G+T TI + L+ L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N +T ++ L ++ L++S N L ++ + L ++ L++++ + + + L
Sbjct: 73 NQIT-DLA-PLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQI-TDVTP-LA 126
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L +L L L +N ++ S L GL +LQ IGN +S + +S+L +
Sbjct: 127 GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKAD 181
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
N + P L S+P L + + N +
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQIS 208
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 22/213 (10%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
F L N + + +T + L ++ L +T I L NL L
Sbjct: 13 FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
++ N +T + P L L+K+ L +S N L ++ A + L S+ LDL+ ++
Sbjct: 69 ELKDNQIT-DLAP-LKNLTKITELELSGNPL-KNVSA-IAGLQSIKTLDLTSTQITD--V 122
Query: 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+ L GL +LQ + N ++ +++ ++ LQ + + + P L ++ +L
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177
Query: 340 LDISRNNFTG--PLPNSRSNVNTSTVELNISQN 370
L N + PL + + +E+++ N
Sbjct: 178 LKADDNKISDISPLAS-----LPNLIEVHLKNN 205
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
L LQ L + + +S + P L NL+ LT+L DN ++ S L L L + L
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLK 203
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
N ++ ++ NL + +++ +T L V S A PA +
Sbjct: 204 NNQIS-DVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATI 259
Query: 259 GDLDSLVDLDLSMNSLS 275
D + +L+ N S
Sbjct: 260 SDNGTYASPNLTWNLTS 276
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 43/261 (16%), Positives = 90/261 (34%), Gaps = 33/261 (12%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLY 172
+L+ + +N W + ++ L + + L
Sbjct: 10 NFSLSQNSFYNTISGTYADYFSAW--DKWEKQALPGENRNEAVSLLKECL--INQFSELQ 65
Query: 173 LSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP 232
L+ L+ ++P +L ++VL++++N+L ++P +L LD N L+ ++P
Sbjct: 66 LNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPE 117
Query: 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV 292
L++L+V NN L + +P L ++ N L+ +P L L
Sbjct: 118 LPA---SLKHLDVDNNQL-TMLPELPA---LLEYINADNNQLT-MLPELPTSLEVL---- 165
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV--LWSMPQLRL-LDISRNNFTG 349
+ N L L+ + + N P + + N T
Sbjct: 166 ----SVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221
Query: 350 PLPNSRSNVNTSTVELNISQN 370
+P + + T + + N
Sbjct: 222 -IPENILS-LDPTCTIILEDN 240
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 2e-17
Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 24/184 (13%)
Query: 111 DALVNLTHL-ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ +L HL N L P+ L+ ++ + ++ ++P T+L
Sbjct: 117 ELPASLKHLDVDNNQLTML-----PELPAL----LEYINADNNQLT-MLPELP---TSLE 163
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS----LDISSNY 225
L + +N LT +P L LD+S N L ++P + N
Sbjct: 164 VLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR 218
Query: 226 LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGL 285
+T IP + +L + + +N L+S I L + D S S +
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
Query: 286 RSLQ 289
R L
Sbjct: 278 RPLA 281
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 10/130 (7%)
Query: 111 DALVNLTHLASFNASRFLLPGSIPDWLGQ---QLPTLQALDLRSCSISGVIPFSLGNLTN 167
+ +L L + S LL S+P + T R I+ IP ++ +L
Sbjct: 177 ELPESLEAL---DVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231
Query: 168 LTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT 227
++ L DN L+ I SL Q + R + + + D + +
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN--TLHRPLADAVTAWFP 289
Query: 228 GSIPPGLGTL 237
+ + +
Sbjct: 290 ENKQSDVSQI 299
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 535 DFSDANL---IKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSH 588
DF N + HSG+L++G +G +V+K + ++ K+ + E SH
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQG-NDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSH 66
Query: 589 ARLVPLLGHCMERENEKF-LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAA 647
++P+LG C L+ +MP G L + L+ TN +D +K A+ A
Sbjct: 67 PNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTN-----FVVDQSQAVKFALDMA 121
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
G+++LH + + S+++D+ R+
Sbjct: 122 RGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARIS 155
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 535 DFSDANLIKN---GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
D+ + + + G G + + V IK+I+ +S + +A+++EL S+V+H +
Sbjct: 6 DYKEIEVEEVVGRGAFGVVCKAKWRA-KDVAIKQIESESER-KAFIVELRQLSRVNHPNI 63
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V L G C+ N LV +Y G L + L+ + + ++G++
Sbjct: 64 VKLYGACL---NPVCLVMEYAEGGSLYNVLHGAEPLPY----YTAAHAMSWCLQCSQGVA 116
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEV 679
YLH +HRD++ ++LL V
Sbjct: 117 YLHSMQPKALIHRDLKPPNLLLVAGGTV 144
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 1e-22
Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 14/228 (6%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSS-LG 187
+P +P L + + + +L + +S N + I +
Sbjct: 24 IPSDLP-------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76
Query: 188 QLSVLSVLDLSR-NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGT-LSKLQYLNV 245
L L + + + N+L P +F L NL L IS+ + +P + L++
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135
Query: 246 SNNSLASSIPAQL--GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303
+N +I G V L L+ N + S G + + + NN L L
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELP 194
Query: 304 VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351
++F S I+ + + P L ++ +LR L
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 8/145 (5%)
Query: 106 PRFAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN 164
P + L N + + + L + L L I + +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES---VILWLNKNGIQEIHNSAFNG 176
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
+N L S +LD+SR + ++P+ L+NL L S
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARST 233
Query: 225 YLTGSIPPGLGTLSKLQYLNVSNNS 249
Y +P L L L +++ S
Sbjct: 234 YNLKKLPT-LEKLVALMEASLTYPS 257
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 20/224 (8%)
Query: 130 PGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQ 188
P ++P + + LDL + + +S + L L LS + TI
Sbjct: 23 PDNLP-------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQS 74
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSN 247
LS LS L L+ N + +F L +L L L S+ G L L+ LNV++
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133
Query: 248 NSLASSIPAQL-GDLDSLVDLDLSMNSLSGSVPSE-LRGLRSLQKFVIGNNFLSGN---- 301
N + S + +L +L LDLS N + S+ LR L + + + LS N
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP-LLNLSLDLSLNPMNF 191
Query: 302 LSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRN 345
+ F + +L+ + L N P + + L+ + + N
Sbjct: 192 IQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 16/214 (7%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSN 224
+ +L LS N L S L VLDLSR + I + L +LS+L ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 225 YLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQL-GDLDSLVDLDLSMNSLSGSVPSE- 281
+ S+ G LS LQ L +L +S+ G L +L +L+++ N + S
Sbjct: 87 PIQ-SLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143
Query: 282 -LRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR----QNGFTGPPPDVLWSMPQ 336
L +L+ + +N + ++ + Q+ ++ L N P +
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIR 201
Query: 337 LRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
L+ L + N +P+ + TS ++ + N
Sbjct: 202 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 29/171 (16%)
Query: 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-----TEAYLL 578
+ + LI G G +++G L PV +K + + Y +
Sbjct: 3 AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRV 61
Query: 579 ELDFFSKVSHARLVPLLGHCMER----ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSL 634
+ H + + E LV +Y PNG L L T
Sbjct: 62 -----PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT--------S 108
Query: 635 DWITRLKIAIGAAEGLSYLHHE------CTLPFVHRDVQASSILLDDKFEV 679
DW++ ++A GL+YLH E HRD+ + ++L+ +
Sbjct: 109 DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTC 159
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 8/167 (4%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+ L L+L ++ + G L L +L LS N L ++P L
Sbjct: 45 TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPA 101
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSL 250
L+VLD+S N LT + L L L + N L ++PPGL KL+ L+++NN+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160
Query: 251 ASSIPAQLGD-LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNN 296
+ +PA L + L++L L L NSL ++P G L + N
Sbjct: 161 -TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 1e-20
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 139 QQLPTLQALDLRSCSISGV---IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195
++ + ++ +++ + +P + T L+LS+N L ++L + L+ L
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 196 DLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP 255
+L R LT + G L L +LD+S N L S+P TL L L+VS N L +S+P
Sbjct: 61 NLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLP 116
Query: 256 AQLGD-LDSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313
L L +L L N L ++P L L+K + NN L+ L L + L
Sbjct: 117 LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174
Query: 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRN 345
++L++N P + L + N
Sbjct: 175 DTLLLQENSLYTIPKGF-FGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 9e-17
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 33/186 (17%)
Query: 164 NLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223
+ + + LT +P ++P + + L +S
Sbjct: 8 KVASHLEVNCDKRNLT-ALPP--------------------DLPK------DTTILHLSE 40
Query: 224 NYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL 282
N L + L ++L LN+ L + + G L L LDLS N L S+P
Sbjct: 41 NLLY-TFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLG 96
Query: 283 RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342
+ L +L + N L+ +L + + +LQ + L+ N PP +L P+L L +
Sbjct: 97 QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 343 SRNNFT 348
+ NN T
Sbjct: 156 ANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 109 AADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTN 167
L L L S N + S+P LGQ LP L LD+ ++ + +L L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQ-----SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 168 LTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
L LYL N L T+P L L L L+ N+LT L+NL +L + N L
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 227 TGSIPPGLGTLSKLQYLNVSNN 248
+IP G L + + N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 48/253 (18%), Positives = 93/253 (36%), Gaps = 13/253 (5%)
Query: 103 SQNPRFAADALVNLTHLASFNASRFLLPG----SIPDWLGQQLPTLQALDLRSCSISGVI 158
+ N LV T + F+ S L G D+ G L L + S
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 159 PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218
+ +N+ + +G ++S LD S N LT + + G L L +
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 219 LDISSNYLTGSIPPGLG---TLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDLSMNSL 274
L + N L + + LQ L++S NS++ SL+ L++S N L
Sbjct: 353 LILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Query: 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSM 334
+ ++ L ++ + +N + ++ + + LQ + + N P + +
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASNQLKSVPDGIFDRL 467
Query: 335 PQLRLLDISRNNF 347
L+ + + N +
Sbjct: 468 TSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 6e-19
Identities = 48/277 (17%), Positives = 88/277 (31%), Gaps = 17/277 (6%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
T L +S N ++ S + LS L +L +S N + + F + L LD+S N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 226 LTGSIPPGLGTLSKLQYLNVSNNSLAS-SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
L I L++L++S N+ + I + G++ L L LS L S +
Sbjct: 81 LV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFP--TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342
L + ++ L I+ F + ++ L L +I
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 343 SRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVH 402
S + + N LT ++ + N F + H
Sbjct: 198 KCVLEDNKCSYFLSIL------AKLQTNPKLSNLT-----LNNIETTWNSFIRILQLVWH 246
Query: 403 SNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNF 439
+ + ++ S + + LS
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 5e-18
Identities = 59/289 (20%), Positives = 94/289 (32%), Gaps = 27/289 (9%)
Query: 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS 201
L++ IS + + +L+ L L +S N + S L LDLS N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 202 LTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG--LGTLSKLQYLNVSNNSLASSIPAQLG 259
L I NL LD+S N ++P G +S+L++L +S L S +
Sbjct: 81 LV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 260 DLDSL-VDLDLSMNSLSGSVPSELRGLR--SLQKFVIGNNFLS----------GNLSVNL 306
L+ V L L P L+ SL N NL ++
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELN 366
V + + + S L ++ + N+F L +T+ +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW---HTTVWYFS 253
Query: 367 ISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQN 415
IS G FR D SG + V S+ + +
Sbjct: 254 ISNVKLQG-----QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 37/219 (16%), Positives = 80/219 (36%), Gaps = 14/219 (6%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLG-----NLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193
T+ + + + G + F +L L+ + + S ++
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS 253
+ + + + + LD S+N LT ++ G L++L+ L + N L
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KE 362
Query: 254 IPAQLGDLDSLV---DLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGNLSVNLFPT 309
+ + LD+S NS+S +SL + +N L+ + L P
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP- 421
Query: 310 VSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
+++++ L N P V+ + L+ L+++ N
Sbjct: 422 --RIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 8e-14
Identities = 54/346 (15%), Positives = 115/346 (33%), Gaps = 28/346 (8%)
Query: 99 TRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVI 158
LG +++ + HL L + L L +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 159 PFSLGNLTNLTSLYLSDNGLTG-----------TIPSSLGQLSVLSVLDLSRNSLTGNIP 207
+ +++ T L + + +I + L LS L L+ T N
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 208 TSFGLLKNLSS---LDISSNYLTGSIPPGLG-----TLSKLQYLNVSNNSLASSIPAQLG 259
L ++ IS+ L G + +L L V ++
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
++ + +++ + NN L+ + +++L+ ++L+
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQ 356
Query: 320 QNGFT--GPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT 377
N ++ M L+ LDIS+N+ + + S + LN+S N+ +
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416
Query: 378 PVLGR-FRLVDLSGNYFEGRVPEYVHSNAS----SLDSNCLQNVPN 418
L +++DL N + +P+ V + ++ SN L++VP+
Sbjct: 417 RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPD 461
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 17/219 (7%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
+L+ S++ + + L ++ + +++ + ++ + L ++ L L+
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N LT +I LKNL L + N + + L L KL+ L++ +N + S I L
Sbjct: 78 NKLT-DI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI-SDING-LV 131
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L L L L N ++ + L L L + +N +S + +++LQ + L
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLS 186
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNV 358
+N + L + L +L++ N +SN+
Sbjct: 187 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 4e-21
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 24/235 (10%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
+L ++ + + I V L N+T L+L+ N LT L L L L L
Sbjct: 43 NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLD 98
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
N + ++ +S LK L SL + N ++ I L L +L+ L + NN + + I L
Sbjct: 99 ENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKI-TDITV-L 152
Query: 259 GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVL 318
L L L L N +S + L GL LQ + N +S + + L ++ L
Sbjct: 153 SRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLEL 207
Query: 319 RQNGFTGPPPD---VLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
P + L ++ D S P S+ + + N+ +
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKNTDGSLVT-----PEIISD-DGDYEKPNVKWH 256
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 8e-18
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
FS L +T + +L+ + + + + + ++ L N++ L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 73
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
++ N LT I P L L L +L + N + + + L DL L L L N + S
Sbjct: 74 FLNGNKLT-DIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGI--SDI 127
Query: 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+ L L L+ +GNN ++ + + +++L + L N + P L + +L+
Sbjct: 128 NGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182
Query: 340 LDISRNNFT 348
L +S+N+ +
Sbjct: 183 LYLSKNHIS 191
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 1e-21
Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 24/282 (8%)
Query: 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS-SLGQLSVLSVLDLSRN 200
+ +DL SI+ + S L +L L + I + + LS L +L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 201 SLTGNIPTS-FGLLKNLSSLDISSNYLTGS-IPPGL-GTLSKLQYLNVSNNSLASSIPAQ 257
+ T F L NL L ++ L G+ + L+ L+ L + +N++ PA
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 258 LGD-LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQII 316
+ LDL+ N + +L + F LS +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH-------FTLLRLSSI--------TLQ 193
Query: 317 VLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGL 376
+ + + + LD+S N F + + T ++ + Y
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 377 TPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLDSNCLQNVPN 418
+ G D F+G V + L + + +
Sbjct: 254 S-SFGHTNFKDPDNFTFKGLEASGVKT--CDLSKSKIFALLK 292
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 5e-19
Identities = 52/286 (18%), Positives = 98/286 (34%), Gaps = 27/286 (9%)
Query: 169 TSLYLSDNGLTG--TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
+ + GL +P+ + + +DLS NS+ TSF L++L L +
Sbjct: 13 YNAICINRGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP 66
Query: 227 TGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSE--L 282
I LS L L + N + L +L L L+ +L G+V S
Sbjct: 67 GLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125
Query: 283 RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342
+ L SL+ V+ +N + + F + + ++ L N + L + +
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 343 SRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVH 402
++ + ++N + N F +DLSGN F+ + +
Sbjct: 186 RLSS------ITLQDMNEYWLGWEKCGNPFK------NTSITTLDLSGNGFKESMAKRFF 233
Query: 403 S--NASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDNFGRPNATQ 446
+ + S L N N + ++F +F
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 1e-18
Identities = 65/350 (18%), Positives = 119/350 (34%), Gaps = 49/350 (14%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ L L + I + + L +L L L + + L NL
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106
Query: 170 SLYLSDNGLTGTI--PSSLGQLSVLSVLDLSRNSLTGNIP-TSFGLLKNLSSLDISSNYL 226
L L+ L G + + L+ L +L L N++ P + F ++ LD++ N +
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
Query: 227 TGSIPPGL---GTLSKLQYLNVSNNSLASSIPAQLGD--------LDSLVDLDLSMNSLS 275
SI L +S+ +L LG S+ LDLS N
Sbjct: 167 K-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 276 GSVPSELRGLRSLQK----FVIGNNFLSGNLSVNLFP----------TVSQLQIIVLRQN 321
S+ + K + + + + F S ++ L ++
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285
Query: 322 GFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN--------MFY 373
V L L +++N + ++ T ++LN+SQN MF
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Query: 374 GGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNAS-----SLDSNCLQNVPN 418
L + ++DLS N+ + + +LD+N L++VP+
Sbjct: 345 N-----LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPD 388
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 2e-17
Identities = 42/272 (15%), Positives = 94/272 (34%), Gaps = 28/272 (10%)
Query: 100 RLGSQNPRFAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTL-----QALDLRSCS 153
+ P + L +FN + + + ++ G+ L D+
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 154 ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL-------------DLSRN 200
+ + T++T+L LS NG ++ + +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259
Query: 201 SLTGNIPTSFGLLK--NLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQ 257
+ +F L+ + + D+S + + ++ + + L+ L ++ N + + I
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI-NKIDDN 317
Query: 258 LGD-LDSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQI 315
L L+ L+LS N L S+ S + L L+ + N + L F + L+
Sbjct: 318 AFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKE 375
Query: 316 IVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
+ L N P + + L+ + + N +
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 535 DFSD---ANLIKNGHSGDLFRGILEGGIPVVIKRI-----DLQSVKTEAYLLELDFFSKV 586
DF++ +I G G ++R G V +K + S E E F+ +
Sbjct: 5 DFAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAML 63
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646
H ++ L G C++ N LV ++ G L+ L K + + A+
Sbjct: 64 KHPNIIALRGVCLKEPN-LCLVMEFARGGPLNRVLSGK--------RIPPDILVNWAVQI 114
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678
A G++YLH E +P +HRD+++S+IL+ K E
Sbjct: 115 ARGMNYLHDEAIVPIIHRDLKSSNILILQKVE 146
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSVKTEAYLL--------ELDFFSK 585
+ I G G + +G L V IK + L + E ++ E+ S
Sbjct: 20 EIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSN 79
Query: 586 VSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIG 645
++H +V L G N +V +++P GDL L K + + W +L++ +
Sbjct: 80 LNHPNIVKLYGLMH---NPPRMVMEFVPCGDLYHRLLDKAH------PIKWSVKLRLMLD 130
Query: 646 AAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678
A G+ Y+ + P VHRD+++ +I L E
Sbjct: 131 IALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDE 162
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 535 DFSD---ANLIKNGHSGDLFRGILEGGIPVVIKRI---DLQSVKTEAYLLELDFFSKVSH 588
+ D I G G + R G V +K + D + + +L E+ ++ H
Sbjct: 35 PWCDLNIKEKIGAGSFGTVHRAEWHG-SDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93
Query: 589 ARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE 648
+V +G + N +V +Y+ G SLYR + + LD RL +A A+
Sbjct: 94 PNIVLFMGAVTQPPN-LSIVTEYLSRG----SLYRLLHKSGAREQLDERRRLSMAYDVAK 148
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
G++YLH+ P VHR++++ ++L+D K+ V++
Sbjct: 149 GMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVC 181
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 1e-20
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 18/209 (8%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-G 187
+P +IP + LDL+S +S + + LT L LYL+DN L T+P+ +
Sbjct: 31 IPSNIP-------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK 82
Query: 188 QLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNV 245
+L L L ++ N L +P F L NL+ L + N L S+PP + +L+KL YL++
Sbjct: 83 ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140
Query: 246 SNNSLASSIPAQLGD-LDSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGNLS 303
N L S+P + D L SL +L L N L VP L L+ + NN L +
Sbjct: 141 GYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Query: 304 VNLFPTVSQLQIIVLRQNGFTGPPPDVLW 332
F ++ +L+++ L++N + +++
Sbjct: 198 EGAFDSLEKLKMLQLQENPWDCTCNGIIY 226
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
+ L L N L+ + +L+ L +L L+ N L F LKNL +L ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 226 LTGSIPPGLGT-LSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDLSMNSLSGSVPSEL- 282
L ++P G+ L L L + N L S+P ++ D L L L L N L S+P +
Sbjct: 97 LQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153
Query: 283 RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342
L SL++ + NN L + F +++L+ + L N P S+ +L++L +
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 343 SRN 345
N
Sbjct: 213 QEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 20/208 (9%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT 203
L D CS + N S+ S LT IPS + LDL N L+
Sbjct: 4 LCKKDGGVCSCNN----------NKNSVDCSSKKLT-AIPS--NIPADTKKLDLQSNKLS 50
Query: 204 GNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-L 261
+F L L L ++ N L ++P G+ L L+ L V++N L + +P + D L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQL 108
Query: 262 DSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ 320
+L +L L N L S+P + L L +G N L +L +F ++ L+ + L
Sbjct: 109 VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166
Query: 321 NGFTGPPPDVLWSMPQLRLLDISRNNFT 348
N P + +L+ L + N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLK 194
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-20
Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 15/216 (6%)
Query: 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS-SLGQLSVLSVLDLSR 199
P+ Q L L + + + NL N++ +Y+S + + S S LS ++ +++
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 200 NSLTGNIPTS-FGLLKNLSSLDISSNYLTGSIPPG--LGTLSKLQYLNVSNNSLASSIPA 256
I L L L I + L P + + L +++N +SIP
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 257 QL--GDLDSLVDLDLSMNSLSGSVPSE-LRGLRSLQKFVIGNNFLSGNLSVNLF-PTVSQ 312
G + + L L N + SV G + ++ N +L+ + + F S
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSG 206
Query: 313 LQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
++ + Q T P L + +L N +T
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIAR----NTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 9/162 (5%)
Query: 215 NLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNS 273
++ + IP Q L + L +IP+ +L ++ + +S++
Sbjct: 12 QEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDV 66
Query: 274 LSGSVPSEL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG-PPPDVL 331
+ S L + I N + + + L+ + + G P +
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 332 WSMPQLRLLDISRNNFTGPLP-NSRSNVNTSTVELNISQNMF 372
+S +L+I+ N + +P N+ + T+ L + N F
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-20
Identities = 44/229 (19%), Positives = 74/229 (32%), Gaps = 24/229 (10%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
Q L L+ + +I+ + L LT L S N LT I + L+ L+ D S
Sbjct: 189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSV 242
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N LT + L L++L L I L ++L Y + +
Sbjct: 243 NPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VT 294
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L LD ++ +L L + N L+ L V+ +L+ +
Sbjct: 295 HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDVSHNT---KLKSLSCV 347
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNFTG-PLPNSRSNVNTSTVELNI 367
+ +P L + P +N T V ++
Sbjct: 348 NAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-19
Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 24/227 (10%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT 203
+ + + S L LTSL ++ +T + + +L+ L+ L + N++T
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77
Query: 204 GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDS 263
+ NL+ L SN LT ++ + L+KL YLN N L + + +
Sbjct: 78 -TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL-TKLD--VSQNPL 128
Query: 264 LVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGF 323
L L+ + N+L+ + + L + N L V QL + N
Sbjct: 129 LTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTPQT---QLTTLDCSFNKI 182
Query: 324 TGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
T + L L+ NN T L ++ N L+ S N
Sbjct: 183 TELD---VSQNKLLNRLNCDTNNITK-LDLNQ---NIQLTFLDCSSN 222
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-17
Identities = 40/235 (17%), Positives = 68/235 (28%), Gaps = 26/235 (11%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
Q L LD S ++ + LT LT S N LT + S LS L+ L +
Sbjct: 210 QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQ 263
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
L I + L + + ++L L+ + + + L
Sbjct: 264 TDLL-EIDLTH--NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI-TELD--LS 315
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
LV L L+ L+ + + L+ N + + + L
Sbjct: 316 QNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEA 369
Query: 320 QNGFTGPPPDV-----LWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQ 369
+ P + L LLD N P + +T +
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQATNTITWEN 423
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 535 DFSD---ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSH 588
F LI G G ++ G G V I+ ID++ + +A+ E+ + + H
Sbjct: 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRH 88
Query: 589 ARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE 648
+V +G CM + ++ L S + LD +IA +
Sbjct: 89 ENVVLFMGACMSPPH-LAIITSLCKGRTLYSVVRDAKI------VLDVNKTRQIAQEIVK 141
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDK 676
G+ YLH + +H+D+++ ++ D+
Sbjct: 142 GMGYLHAK---GILHKDLKSKNVFYDNG 166
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 16/189 (8%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
F L N L +T S +LS + + +++ ++ NL L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
+S N ++ + P L L+KL+ L+V+ N L ++ L L L N L
Sbjct: 69 HLSHNQIS-DLSP-LKDLTKLEELSVNRNRL-KNLNG--IPSACLSRLFLDNNELRD--T 121
Query: 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
L L++L+ I NN L S+ + +S+L+++ L N T L + ++
Sbjct: 122 DSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176
Query: 340 LDISRNNFT 348
+D++
Sbjct: 177 IDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
Q L+ L L IS + P L +LT L L ++ N L + + LS L L
Sbjct: 60 QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL--NGIPSAC-LSRLFLD 114
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
N L S LKNL L I +N L SI LG LSKL+ L++ N + ++ L
Sbjct: 115 NNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI-TNTGG-L 168
Query: 259 GDLDSLVDLDLSMNSLSGSVPSELRGLRSL 288
L + +DL+ L
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 545 GHSGDLFRGILEG-GIPVVIKRIDLQSVKTEAYLL-ELDFFSKVSHARLVPLLGHCMERE 602
G G + G +V+K + +T+ L E+ + H ++ +G + +
Sbjct: 21 GCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDK 80
Query: 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFV 662
+ +Y+ G L + + W R+ A A G++YLH ++ +
Sbjct: 81 RL-NFITEYIKGGTLRGIIKSMDS------QYPWSQRVSFAKDIASGMAYLH---SMNII 130
Query: 663 HRDVQASSILLDDKFEV 679
HRD+ + + L+ + V
Sbjct: 131 HRDLNSHNCLVRENKNV 147
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 21/153 (13%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFF--SKVSHARLVPLLGH 597
I G G+++RG G V +K + + ++ E + + + H ++ +
Sbjct: 48 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER--SWFREAEIYQTVMLRHENILGFIAA 104
Query: 598 CMERENEK---FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH 654
+ +LV Y +G L L R T + +K+A+ A GL++LH
Sbjct: 105 DNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT--------VTVEGMIKLALSTASGLAHLH 156
Query: 655 HE-----CTLPFVHRDVQASSILLDDKFEVRLG 682
E HRD+++ +IL+ +
Sbjct: 157 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA 189
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 535 DFSDANLIK---NGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSH 588
+ + +G G +++G G V +K +++ + + +A+ E+ K H
Sbjct: 22 PDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRH 79
Query: 589 ARLVPLLGHCMERENEKF-LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAA 647
++ +G+ + +V ++ L L+ + + IA A
Sbjct: 80 VNILLFMGYSTA---PQLAIVTQWCEGSSLYHHLHASET------KFEMKKLIDIARQTA 130
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
G+ YLH +HRD+++++I L + V++G
Sbjct: 131 RGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIG 162
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 42/236 (17%), Positives = 93/236 (39%), Gaps = 12/236 (5%)
Query: 121 SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPF-----SLGNLTNLTSLYLSD 175
+ S+ + ++ L++ + +I+ I S L +L ++ +
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314
Query: 176 NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLG 235
+ + + +++ LS + + + L+ + N T S+ G
Sbjct: 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374
Query: 236 TLSKLQYLNVSNNSLAS--SIPAQLGDLDSLVDLDLSMNSLSGSVPSEL-RGLRSLQKFV 292
TL +LQ L + N L + + ++ SL LD+S+NSL+ S+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 293 IGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
+ +N L+G++ L +++++ L N P DV + L+ L+++ N
Sbjct: 435 LSSNMLTGSVFRCL---PPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLK 486
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 4e-17
Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 13/243 (5%)
Query: 113 LVNLTHLASFNASRFLLPGSI----PDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNL 168
+ N + I + L +L +++ +
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG 228
LS + S + L+ ++N T ++ LK L +L + N L
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK- 390
Query: 229 SIPPG---LGTLSKLQYLNVSNNSLASSIPAQL-GDLDSLVDLDLSMNSLSGSVPSELRG 284
+ +S L+ L+VS NSL S + +S++ L+LS N L+GSV L
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-- 448
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344
++ + NN + ++ ++ + LQ + + N P V + L+ + +
Sbjct: 449 PPKVKVLDLHNNRIM-SIPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Query: 345 NNF 347
N +
Sbjct: 507 NPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 4e-17
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 14/191 (7%)
Query: 111 DALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ S + + F+ + L+ + + L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCP-----PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380
Query: 170 SLYLSDNGLT--GTIPSSLGQLSVLSVLDLSRNSLT-GNIPTSFGLLKNLSSLDISSNYL 226
+L L NGL + +S L LD+S NSL + +++ L++SSN L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 227 TGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE-LRGL 285
TGS+ L K++ L++ NN + SIP + L +L +L+++ N L SVP L
Sbjct: 441 TGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496
Query: 286 RSLQKFVIGNN 296
SLQ + +N
Sbjct: 497 TSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 9e-16
Identities = 57/274 (20%), Positives = 91/274 (33%), Gaps = 19/274 (6%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQLS 190
+P L P +AL L SIS + + L+ L L LS N + ++ +
Sbjct: 45 HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQ 100
Query: 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG--LGTLSKLQYLNVSNN 248
L LD+S N L NI + +L LD+S N +P G L+KL +L +S
Sbjct: 101 DLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAA 156
Query: 249 SLASSIPAQLGDLD-SLVDLDLSMNSLSGSVPSELRGL--RSLQKFVIGNNFLSGNLSVN 305
+ L S + LDL + G L+ L N+ S ++++
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 306 LFPTVS-QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNV----NT 360
+ QL I L + LL+++ + S
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 361 STVELNISQNMFYGGLTPVLGRFRLVDLSGNYFE 394
LNI + + L E
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 59/330 (17%), Positives = 110/330 (33%), Gaps = 21/330 (6%)
Query: 108 FAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTN 167
A ++L+ + S + G L + + S + S+ L +
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 168 LTSLYLSDNGLTGTIPSSL----GQLSVLSVLDLSRNSLTGNIPT---SFGLLKNLSSLD 220
L + N + + L + L T F + + L+
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 221 ISSNYLTGSIPPGLGT-----LSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275
I + +T I T L L +V N S A + LS++
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
Query: 276 GSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFT--GPPPDVLWS 333
S N + + T+ +LQ ++L++NG + +
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401
Query: 334 MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL-GRFRLVDLSGNY 392
M L LD+S N+ + S + LN+S NM G + L + +++DL N
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR 461
Query: 393 FEGRVPEYVHSNAS----SLDSNCLQNVPN 418
+P+ V + ++ SN L++VP+
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPD 490
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 47/276 (17%), Positives = 91/276 (32%), Gaps = 46/276 (16%)
Query: 111 DALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ +L HL SFN D + GNLT LT
Sbjct: 118 CPMASLRHLDLSFN------------------------DFDVLPVCKEF----GNLTKLT 149
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSV-LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG 228
L LS + L + + LDL + G S + N + L + + +
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSL 208
Query: 229 SIPPGLGTLSKLQYLNVSNNSL-------ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE 281
+++ L +L +SN L + ++L +L+++ L + +
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 282 LRGL---RSLQKFVIGNNFLSGNLSVNLFP----TVSQLQIIVLRQNGFTGPPPDVLWSM 334
L R ++ I N ++ + F + L I ++ F +
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328
Query: 335 PQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
++ + +S ++ T + +S LN +QN
Sbjct: 329 AEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQN 363
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRI---DLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
+ G G+++RG G V +K D +S E L + H ++ +
Sbjct: 14 ECVGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRETELYNT---VMLRHENILGFIA 69
Query: 597 HCMERENEK---FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
M + +L+ Y G L L T LD ++ L+I + A GL++L
Sbjct: 70 SDMTSRHSSTQLWLITHYHEMGSLYDYLQLTT--------LDTVSCLRIVLSIASGLAHL 121
Query: 654 HHE-----CTLPFVHRDVQASSILLDDKFEVRLG 682
H E HRD+++ +IL+ + +
Sbjct: 122 HIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIA 155
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRI---DLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
I G G+++ G G V +K + S E + + + H ++ +
Sbjct: 43 KQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFRETEIYQT---VLMRHENILGFIA 98
Query: 597 HCMERENEK---FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
++ +L+ Y NG L L T LD + LK+A + GL +L
Sbjct: 99 ADIKGTGSWTQLYLITDYHENGSLYDYLKSTT--------LDAKSMLKLAYSSVSGLCHL 150
Query: 654 HHE-----CTLPFVHRDVQASSILLDDKFEVRLG 682
H E HRD+++ +IL+ +
Sbjct: 151 HTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIA 184
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 9e-16
Identities = 47/198 (23%), Positives = 70/198 (35%), Gaps = 42/198 (21%)
Query: 129 LPGSIPDWLGQQLPTLQALDLRSCSISGVIP-FSLGNLTNLTSLYLSDNGLTGTIPSSLG 187
+P S+P LDL ++S + ++ LTNL SL LS N L I
Sbjct: 33 VPQSLP-------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FIS---- 80
Query: 188 QLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVS 246
+F + NL LD+SSN+L ++ L L+ L +
Sbjct: 81 -------------------SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 247 NNSLASSIPA-QLGDLDSLVDLDLSMNSLSGSVPSE----LRGLRSLQKFVIGNNFLSGN 301
NN + + D+ L L LS N +S P E L L + +N L
Sbjct: 121 NNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-K 177
Query: 302 LSVNLFPTVSQLQIIVLR 319
L + + L
Sbjct: 178 LPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 35/179 (19%)
Query: 100 RLGSQNPRFAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVI 158
L + L NL L S N F+ + +P L+ LDL S + +
Sbjct: 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-----VPVPNLRYLDLSSNHLHTLD 104
Query: 159 PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218
F +L L L L +N + + +F + L
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVD-----------------------RNAFEDMAQLQK 140
Query: 219 LDISSNYLTGSIPPG----LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
L +S N ++ P L KL L++S+N L L L + V L +++
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 79.8 bits (196), Expect = 1e-15
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 19/181 (10%)
Query: 147 LDLRSCSISGVIPFSLGNLTNLTSL--------YLSDNGLTGTIPSSLGQLSVLSVLDLS 198
L +R+ +L + L ++ + + + + VL L+
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258
LT + L ++ LD+S N L ++PP L L L+ L S+N+L ++ +
Sbjct: 450 HKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDG-V 504
Query: 259 GDLDSLVDLDLSMNSLSG-SVPSELRGLRSLQKFVIGNNFLSG-----NLSVNLFPTVSQ 312
+L L +L L N L + L L + N L + P+VS
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564
Query: 313 L 313
+
Sbjct: 565 I 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 5e-15
Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 17/214 (7%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD-- 196
++ LQ+ + + P + L + L + + L +L S L +D
Sbjct: 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPM 417
Query: 197 ------LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL 250
R+ ++ L ++ LT + L L + +L++S+N L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL 475
Query: 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310
++P L L L L S N+L +V + L LQ+ ++ NN L + ++ +
Sbjct: 476 -RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532
Query: 311 SQLQIIVLRQNGFTGPPP---DVLWSMPQLRLLD 341
+L ++ L+ N + +P + +
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 44/214 (20%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
L +L S S V+ L + L L + TI + L L +
Sbjct: 347 TDEQLFRCEL-SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405
Query: 200 NSLTGNIPTSFGLLKNLSSLDIS-----SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI 254
+ LK + + + + + ++ L++++ L + +
Sbjct: 406 QYFST--------LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVL 456
Query: 255 PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQ 314
L L + LDLS N L ++P L LR L+ +N L N+
Sbjct: 457 CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-----NV-------- 501
Query: 315 IIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
D + ++P+L+ L + N
Sbjct: 502 --------------DGVANLPRLQELLLCNNRLQ 521
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-15
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
+T + L N + P + L +DLS N ++ P +F L++L+SL + N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 226 LTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDLSMNSLSGSVPSELR 283
+T +P L L LQ L ++ N + + + L +L L L N L
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 284 GLRSLQKFVIGNN 296
LR++Q + N
Sbjct: 150 PLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 5e-15
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 130 PGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS-SLGQ 188
P ++P T+ + L +I + P + L + LS+N ++ + +
Sbjct: 27 PTNLP-------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQG 78
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSN 247
L L+ L L N +T + F L +L L +++N + + L L L++ +
Sbjct: 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137
Query: 248 NSLASSIPAQLGDLDSLVDLDLSMN 272
N L + L ++ + L+ N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 106 PRFAADALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN 164
P A L + S N L P + Q L +L +L L I+ +
Sbjct: 48 PPGAFSPYKKLRRIDLSNNQISELAPDAF-----QGLRSLNSLVLYGNKITELPKSLFEG 102
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
L +L L L+ N + + L L++L L N L +F L+ + ++ ++ N
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 6e-15
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 147 LDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNI 206
L I + +L L L LS N + I SSL + L +L L RN + I
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85
Query: 207 PTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS-SIPAQLGDLDSLV 265
+ L L IS N + S+ G+ L L+ L +SNN + + +L LD L
Sbjct: 86 ENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 266 DLDLSMN 272
DL L+ N
Sbjct: 144 DLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 16/157 (10%)
Query: 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI 254
L + + + LK L +S+N + I L + L+ L++ N + I
Sbjct: 30 LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI-KKI 85
Query: 255 PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQ 314
D+L +L +S N ++ S + L +L+ + NN ++ ++ + +L+
Sbjct: 86 ENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 315 IIVLRQNGFTGPPPD----------VLWSMPQLRLLD 341
++L N + V+ +P L+ LD
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 9e-15
Identities = 53/156 (33%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNSLT 203
+ LDL+S ++ + + LT LT L L N L T+ + + L+ L L L+ N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 204 GNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-L 261
F L L L + N L S+P G+ L+KL+ L ++ N L SIPA D L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKL 154
Query: 262 DSLVDLDLSMNSLSGSVP-SELRGLRSLQKFVIGNN 296
+L L LS N L SVP L LQ + N
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 6e-14
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 11/161 (6%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
+ L L GL ++ L+ L+ L+L N L F L L +L +++N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 226 LTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVD---LDLSMNSLSGSVPSE 281
L S+P G+ L++L L + N L S+P+ G D L L L+ N L S+P+
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPS--GVFDRLTKLKELRLNTNQLQ-SIPAG 149
Query: 282 L-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQN 321
L +LQ + N L ++ F + +LQ I L N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 8e-14
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 545 GHSGDLFRGILEGG-IPVVIKRI--DLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER 601
G+ G++F G L V +K L +L E + SH +V L+G C ++
Sbjct: 125 GNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK 184
Query: 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661
+ ++V + + GD + + +T L T L++ AA G+ YL +
Sbjct: 185 Q-PIYIVMELVQGGDFLT--FLRTEG----ARLRVKTLLQMVGDAAAGMEYLESK---CC 234
Query: 662 VHRDVQASSILLDDKFEVRLG 682
+HRD+ A + L+ +K +++
Sbjct: 235 IHRDLAARNCLVTEKNVLKIS 255
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 9e-14
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G G V IK + ++ EA+L E K+ H +LV L E
Sbjct: 195 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI- 253
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V +YM G L L + + L + +A A G++Y+ +VHR
Sbjct: 254 -YIVTEYMSKGSLLDFL-----KGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHR 304
Query: 665 DVQASSILLDDKFEV 679
D++A++IL+ +
Sbjct: 305 DLRAANILVGENLVC 319
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G G V +K + S+ +A+L E + ++ H RLV L +
Sbjct: 24 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPI- 82
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+++ +YM NG L + KT L L +A AEG++++ ++HR
Sbjct: 83 -YIITEYMENGSLVD--FLKTP---SGIKLTINKLLDMAAQIAEGMAFIEERN---YIHR 133
Query: 665 DVQASSILLDDKFEVRLG 682
D++A++IL+ D ++
Sbjct: 134 DLRAANILVSDTLSCKIA 151
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ V +K + S+ EA+L E + + H +LV L +
Sbjct: 199 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT--KEP 256
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
+++ ++M G L L ++ L L + + AEG++++ ++HR
Sbjct: 257 IYIITEFMAKGSLLDFLKSDEGSKQPLPKL-----IDFSAQIAEGMAFIEQRN---YIHR 308
Query: 665 DVQASSILLDDKFEV 679
D++A++IL+
Sbjct: 309 DLRAANILVSASLVC 323
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 545 GHSGDLFRGILEGG----IPVVIK--RIDLQSVKT-EAYLLELDFFSKVSHARLVPLLGH 597
G G + G L+ + V +K ++D S + E +L E SH ++ LLG
Sbjct: 45 GEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGV 104
Query: 598 CMERENEK----FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
C+E ++ ++ +M GDL + L + E + + T LK + A G+ YL
Sbjct: 105 CIEMSSQGIPKPMVILPFMKYGDLHTYL-LYSRLETGPKHIPLQTLLKFMVDIALGMEYL 163
Query: 654 --HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ F+HRD+ A + +L D V +
Sbjct: 164 SNRN-----FLHRDLAARNCMLRDDMTVCVA 189
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 545 GHSGDLFRGILEG-GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603
G G+++ G+ + + V +K + +++ E +L E ++ H LV LLG C
Sbjct: 231 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP- 289
Query: 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663
+++ ++M G+L L R+ N Q + + L +A + + YL + F+H
Sbjct: 290 PFYIITEFMTYGNLLDYL-RECNR----QEVSAVVLLYMATQISSAMEYLEKKN---FIH 341
Query: 664 RDVQASSILLDDKFEV 679
R++ A + L+ + V
Sbjct: 342 RNLAARNCLVGENHLV 357
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 64/335 (19%), Positives = 100/335 (29%), Gaps = 80/335 (23%)
Query: 137 LGQQLPTLQALDLRSCSIS----GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQL--- 189
L +Q L L++C ++ GV+ +L L L L+LSDN L L +
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139
Query: 190 --SVLSVLDLSRNSLTGNIPTSFGLL----KNLSSLDISSNYLTGS----IPPGLG-TLS 238
L L L SL+ + + L +S+N + + + GL +
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199
Query: 239 KLQYLNVSNNSL----ASSIPAQLGDLDSLVDLDLSMNSLSGS-----VPSELRGLRSLQ 289
+L+ L + + + + + SL +L L N L P L L+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259
Query: 290 KFVIGNNF-----------------------LSGN---------LSVNLFPTVSQLQIIV 317
I L+GN L L QL+ +
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319
Query: 318 LRQNGFTGPPPD-------VLWSMPQLRLLDISRNNFTGP----LPNSRSNVNTSTVELN 366
++ FT VL L L IS N L + L
Sbjct: 320 VKSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376
Query: 367 ISQNMF----YGGLTPVLGR---FRLVDLSGNYFE 394
++ L L R +DLS N
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 52/272 (19%), Positives = 85/272 (31%), Gaps = 62/272 (22%)
Query: 137 LGQQLPTLQALDLRSCSIS--GVIPFS--LGNLTNLTSLYLSDNGLTGTIPSSLGQL--- 189
L L Q + L C ++ S L L L L N L + Q
Sbjct: 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82
Query: 190 --SVLSVLDLSRNSLT----GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLS----- 238
+ L L LT G + ++ L L L +S N L + GL L
Sbjct: 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA---GLQLLCEGLLD 139
Query: 239 ---KLQYLNVSNNSL----ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
+L+ L + SL + + L +L +S N ++ + G+R L +
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA------GVRVLCQG 193
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD-------VLWSMPQLRLLDISR 344
+ + QL+ + L G T D ++ S LR L +
Sbjct: 194 LKDSP--------------CQLEALKLESCGVT---SDNCRDLCGIVASKASLRELALGS 236
Query: 345 NNFTGP----LPNSRSNVNTSTVELNISQNMF 372
N L + ++ L I +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 55/276 (19%), Positives = 87/276 (31%), Gaps = 45/276 (16%)
Query: 139 QQLPTLQALDLRSCSIS--GVIPFSLG---NLTNLTSLYLSDNGLT----GTIPSSLGQL 189
+ P + L + + I+ GV G + L +L L G+T + +
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226
Query: 190 SVLSVLDLSRNSLTGN-----IPTSFGLLKNLSSLDISSNYLT----GSIPPGLGTLSKL 240
+ L L L N L P L +L I +T G + L L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286
Query: 241 QYLNVSNNSL----ASSIPAQLGDLD-SLVDLDLSMNSLSG----SVPSELRGLRSLQKF 291
+ L+++ N L A + L + L L + S + S L R L +
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346
Query: 292 VIGNNFLSG----NLSVNLFPTVSQLQIIVLRQNGFTGPPPD-------VLWSMPQLRLL 340
I NN L L L S L+++ L + L + LR L
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS---DSSCSSLAATLLANHSLREL 403
Query: 341 DISRNNFTGP----LPNSRSNVNTSTVELNISQNMF 372
D+S N L S +L + +
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 45/229 (19%), Positives = 80/229 (34%), Gaps = 42/229 (18%)
Query: 166 TNLTSLYLSDNGLTGT-IPSSLGQLSVLSVLDLSRNSLT----GNIPTSFGLLKNLSSLD 220
++ SL + L+ L L V+ L LT +I ++ + L+ L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 221 ISSNYLTGS----IPPGLGTLS-KLQYLNVSNNSL----ASSIPAQLGDLDSLVDLDLSM 271
+ SN L + GL T S K+Q L++ N L + + L L +L +L LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 272 NSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP--- 328
N L + GL+ L + ++ +L+ + L +
Sbjct: 123 NLLGDA------GLQLLCEGLLDPQ--------------CRLEKLQLEYCSLSAASCEPL 162
Query: 329 -DVLWSMPQLRLLDISRNNFTGP----LPNSRSNVNTSTVELNISQNMF 372
VL + P + L +S N+ L + L +
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Query: 137 LGQQLPTLQALDLRSCSIS--GVIPFS--LGNLTNLTSLYLSDNGLTGTIPSSLGQL--- 189
L + L++L ++SCS + FS L L L +S+N L L Q
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367
Query: 190 --SVLSVLDLSRNSLT--GNIPTSFGLLKN--LSSLDISSNYLTGSIPPGLGTLS----- 238
SVL VL L+ ++ + LL N L LD+S+N L G+ L
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG---DAGILQLVESVRQ 424
Query: 239 ---KLQYLNVSNNSL 250
L+ L + +
Sbjct: 425 PGCLLEQLVLYDIYW 439
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G + G V IK I ++ E ++ E + K+SH +LV L G C+ +
Sbjct: 19 GQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL-EQAP 77
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
LV ++M +G LS L R ++L L + + EG++YL C +HR
Sbjct: 78 ICLVTEFMEHGCLSDYL-RTQRGLFAAETL-----LGMCLDVCEGMAYLEEAC---VIHR 128
Query: 665 DVQASSILLDDKFEVRLG 682
D+ A + L+ + +++
Sbjct: 129 DLAARNCLVGENQVIKVS 146
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++ G G V IK + ++ EA+L E K+ H +LV L E
Sbjct: 278 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI- 336
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V +YM G L L + + L + +A A G++Y+ +VHR
Sbjct: 337 -YIVTEYMSKGSLLDFL-----KGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHR 387
Query: 665 DVQASSILLDDKFEV 679
D++A++IL+ +
Sbjct: 388 DLRAANILVGENLVC 402
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G + G G V IK I S+ + ++ E +SH +LV L G C ++
Sbjct: 35 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRP 93
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHECTLPFV 662
F++ +YM NG L + L R+ Q L L++ E + YL F+
Sbjct: 94 IFIITEYMANGCLLNYL-REMRHRFQTQQL-----LEMCKDVCEAMEYLESKQ-----FL 142
Query: 663 HRDVQASSILLDDKFEVRLG 682
HRD+ A + L++D+ V++
Sbjct: 143 HRDLAARNCLVNDQGVVKVS 162
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G + G +G V +K I S+ + + E K+SH +LV G C +E
Sbjct: 19 GQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCS-KEYP 77
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V +Y+ NG L + Y +++ + L+ L++ EG+++L F+HR
Sbjct: 78 IYIVTEYISNGCLLN--YLRSHG----KGLEPSQLLEMCYDVCEGMAFLESHQ---FIHR 128
Query: 665 DVQASSILLDDKFEVRLG 682
D+ A + L+D V++
Sbjct: 129 DLAARNCLVDRDLCVKVS 146
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 545 GHSGDLFRGILEGG----IPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
GH G ++ G I IK + + EA+L E ++H ++ L+G
Sbjct: 32 GHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIM 91
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHE 656
+ E ++ YM +GDL + R ++ L + + A G+ YL
Sbjct: 92 LPPEGLPHVLLPYMCHGDLLQFI-RSPQRNPTVKDL-----ISFGLQVARGMEYLAEQK- 144
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
FVHRD+ A + +LD+ F V++
Sbjct: 145 ----FVHRDLAARNCMLDESFTVKVA 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 7e-13
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 166 TNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
L L++N T + + +L L ++ S N +T +F ++ + ++SN
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 225 YLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDLSMNSLSGSVPSE- 281
L ++ + L L+ L + +N + + + L S+ L L N ++ +V
Sbjct: 92 RLE-NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148
Query: 282 LRGLRSLQKFVIGNN 296
L SL + N
Sbjct: 149 FDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-12
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
++LP L+ ++ + I+ + + + + + L+ N L L L L L
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNN 248
N +T SF L ++ L + N +T ++ PG TL L LN+ N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 30/157 (19%)
Query: 194 VLDLSRNSLTGNIPT-SFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSLA 251
L L+ N T T F L L ++ S+N +T I G S + + +++N L
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL- 93
Query: 252 SSIPAQLGD-LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310
++ ++ L+SL L L N ++ V ++ F +
Sbjct: 94 ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDS------------------------FIGL 128
Query: 311 SQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
S ++++ L N T P ++ L L++ N F
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%)
Query: 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSGSVPS 280
S+ L IP + L ++NN L L ++ S N ++
Sbjct: 19 SNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 281 ELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLL 340
G + + ++ +N L N+ +F + L+ ++LR N T D + +RLL
Sbjct: 76 AFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134
Query: 341 DISRNNFT 348
+ N T
Sbjct: 135 SLYDNQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 111 DALVNLTHLA-SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
+ + + + N ++ + + L +L+ L LRS I+ V S L+++
Sbjct: 78 EGASGVNEILLTSNRLE-----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200
L L DN +T P + L LS L+L N
Sbjct: 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 9e-13
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 10/135 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G GD+ G G V +K I +A+L E +++ H+ LV LLG +E +
Sbjct: 204 GEFGDVMLGDYRG-NKVAVKCIK-NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG 261
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V +YM G L L L LK ++ E + YL FVHR
Sbjct: 262 LYIVTEYMAKGSLVDYL-----RSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHR 313
Query: 665 DVQASSILLDDKFEV 679
D+ A ++L+ +
Sbjct: 314 DLAARNVLVSEDNVA 328
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 20/152 (13%)
Query: 545 GHSGDLFRGILEGG----IPVVIK--RIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGH 597
G G + L+ + V +K + D+ + E +L E + H + L+G
Sbjct: 34 GEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGV 93
Query: 598 CMERENEK-----FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
+ + ++ +M +GDL + L + ++ +L T ++ + A G+ Y
Sbjct: 94 SLRSRAKGRLPIPMVILPFMKHGDLHAFL-LASRIGENPFNLPLQTLVRFMVDIACGMEY 152
Query: 653 L--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
L + F+HRD+ A + +L + V +
Sbjct: 153 LSSRN-----FIHRDLAARNCMLAEDMTVCVA 179
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 31/152 (20%)
Query: 545 GHSGDLFRGILEGG----IPVVIK----------RIDLQSVKTEAYLLELDFFSKVSHAR 590
GH G ++ G L I +K + E ++ SH
Sbjct: 36 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT---EGIIM-----KDFSHPN 87
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
++ LLG C+ E +V YM +GDL + + R ++ L + + A+G+
Sbjct: 88 VLSLLGICLRSEGSPLVVLPYMKHGDLRNFI-RNETHNPTVKDL-----IGFGLQVAKGM 141
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YL + FVHRD+ A + +LD+KF V++
Sbjct: 142 KYLA---SKKFVHRDLAARNCMLDEKFTVKVA 170
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G GD+ G G V +K I +A+L E +++ H+ LV LLG +E +
Sbjct: 32 GEFGDVMLGDYRG-NKVAVKCIK-NDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGG 89
Query: 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHR 664
++V +YM G L L R L LK ++ E + YL FVHR
Sbjct: 90 LYIVTEYMAKGSLVDYL-R----SRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHR 141
Query: 665 DVQASSILLDDKFEV 679
D+ A ++L+ +
Sbjct: 142 DLAARNVLVSEDNVA 156
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 545 GHSGDLFRGILEGG-IPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603
G G+++ G+ + + V +K + +++ E +L E ++ H LV LLG C RE
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663
+++ ++M G+L L R+ N Q + + L +A + + YL + F+H
Sbjct: 83 PFYIITEFMTYGNLLDYL-RECNR----QEVSAVVLLYMATQISSAMEYLEKKN---FIH 134
Query: 664 RDVQASSILLDDKFEVRLG 682
RD+ A + L+ + V++
Sbjct: 135 RDLAARNCLVGENHLVKVA 153
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 53/316 (16%), Positives = 104/316 (32%), Gaps = 70/316 (22%)
Query: 143 TLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGT----IPSSLGQLSVLSV 194
+++ L+ +I+ + L ++ + LS N + + ++ L +
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 195 LDLSRNS---LTGNIPTSFGLL-------KNLSSLDISSNYLTG----SIPPGLGTLSKL 240
+ S + IP + LL L ++ +S N + L + L
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 241 QYLNVSNNSL----ASSIPAQLGDLD---------SLVDLDLSMNSL-SGSVP---SELR 283
++L + NN L + I L +L L + N L +GS+ +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 284 GLRSLQKFVIGNN---------FLSGNLSVNLFPTVSQLQIIVLRQNGFT--GPPP--DV 330
R L + N L L+ +L+++ L+ N FT G
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-----QELKVLDLQDNTFTHLGSSALAIA 239
Query: 331 LWSMPQLRLLDISRNNFTGP----LPNS-RSNVNTSTVELNISQN--------MFYGGLT 377
L S P LR L ++ + + ++ N L + N +
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299
Query: 378 PVLGRFRLVDLSGNYF 393
+ ++L+GN F
Sbjct: 300 EKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 56/263 (21%)
Query: 139 QQLPTLQALDLRSCSIS----------GVIPFSLGNLTNLTSLYLSDNGLTGT----IPS 184
L+ + ++ +L L ++ LSDN T +
Sbjct: 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 185 SLGQLSVLSVLDLSRNSLT-------------GNIPTSFGLLKNLSSLDISSNYLTG--- 228
L + + L L L N L + L S+ N L
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 229 -SIPPGLGTLSKLQYLNVSNNSL----ASSIPAQ-LGDLDSLVDLDLSMNSLSG----SV 278
+ L + + N + + + L L LDL N+ + ++
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236
Query: 279 PSELRGLRSLQKFVIGNN--------FLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV 330
L+ +L++ + + + S LQ + L+ N
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG---LQTLRLQYNEIELDAVRT 293
Query: 331 L-----WSMPQLRLLDISRNNFT 348
L MP L L+++ N F+
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFS 316
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 5e-12
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
++T LYL N T +P L L+++DLS N ++ SF + L +L +S N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 226 LTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDLSMN 272
L IPP L L+ L++ N + S +P + L +L L + N
Sbjct: 90 LR-CIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 246 SNNSLAS---SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302
SN L IP + +L L N + VP EL + L + NN +S L
Sbjct: 18 SNKGLKVLPKGIPR------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TL 69
Query: 303 SVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRN 345
S F ++QL ++L N PP + LRLL + N
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198
L +DL + IS + S N+T L +L LS N L P + L L +L L
Sbjct: 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110
Query: 199 RNSLTGNIPT-SFGLLKNLSSLDISSN 224
N ++ +P +F L LS L I +N
Sbjct: 111 GNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 6e-12
Identities = 43/136 (31%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
TN LYL DN +T P L L L L N L F L L+ LD+ +N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 226 LTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
LT +P + L L+ L + N L + +P + L L L L N L S+P G
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP---HG 153
Query: 285 ----LRSLQKFVIGNN 296
L SL + N
Sbjct: 154 AFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 49/145 (33%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Query: 130 PGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQ 188
P IP Q L L I+ + P +L NL LYL N L +P +
Sbjct: 35 PAGIP-------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDS 86
Query: 189 LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248
L+ L+VLDL N LT F L +L L + N LT +P G+ L+ L +L + N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 249 SLASSIPAQLGD-LDSLVDLDLSMN 272
L SIP D L SL L N
Sbjct: 146 QL-KSIPHGAFDRLSSLTHAYLFGN 169
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 35/154 (22%)
Query: 545 GHSGDLFRGILEGG----IPVVIK----------RIDLQSVKTEAYLLELDFFSKVSHAR 590
GH G ++ G L I +K + E ++ SH
Sbjct: 100 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT---EGIIM-----KDFSHPN 151
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
++ LLG C+ E +V YM +GDL + + R ++ L + + A+G+
Sbjct: 152 VLSLLGICLRSEGSPLVVLPYMKHGDLRNFI-RNETHNPTVKDL-----IGFGLQVAKGM 205
Query: 651 SYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+L FVHRD+ A + +LD+KF V++
Sbjct: 206 KFLASKK-----FVHRDLAARNCMLDEKFTVKVA 234
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 545 GHSGDLFRGIL--------EGGIPVVIKRIDLQSVKT-EAYLLELDFFSKVSHARLVPLL 595
G +F+G+ V++K +D E++ SK+SH LV
Sbjct: 19 GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNY 78
Query: 596 GHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL-- 653
G C+ + E LV +++ G L + L + N ++ + +L++A A + +L
Sbjct: 79 GVCVCGD-ENILVQEFVKFGSLDTYLKKNKN------CINILWKLEVAKQLAAAMHFLEE 131
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ +H +V A +ILL + + + G
Sbjct: 132 NT-----LIHGNVCAKNILLIREEDRKTG 155
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 135 DWLGQQLPTLQALDLRSCSIS-GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193
+ + ++ L L +C + G I NL L L + GL ++ S+L +L L
Sbjct: 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLK 74
Query: 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT--GSIPPGLGTLSKLQYLNVSNNSLA 251
L+LS N + G + L NL+ L++S N L ++ P L L L+ L++ N +
Sbjct: 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVT 133
Query: 252 S 252
+
Sbjct: 134 N 134
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 34/162 (20%)
Query: 183 PSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQY 242
P+++ +L VLD +++ G I NL L + + L S+ L L KL+
Sbjct: 23 PAAVREL----VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKK 75
Query: 243 LNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302
L +S N + + L +L L+LS N L S L L+ L+
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLEC------------ 121
Query: 303 SVNLFPTVSQLQIIVLRQNGFTGPP---PDVLWSMPQLRLLD 341
L+ + L T V +PQL LD
Sbjct: 122 ----------LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLT--GTIPSSLGQLSVLSVLD 196
+LP L+ L+L I G + L NLT L LS N L T+ L +L L LD
Sbjct: 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLD 126
Query: 197 LSRNSLT---GNIPTSFGLLKNLSSLD 220
L +T + F LL L+ LD
Sbjct: 127 LFNCEVTNLNDYRESVFKLLPQLTYLD 153
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 152 CSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211
C G G T L L N L +L+ L+ L L N L F
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73
Query: 212 LLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDL 269
L +L+ L++S+N L S+P G+ L++L+ L ++ N L S+P + D L L DL L
Sbjct: 74 KLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRL 131
Query: 270 SMNSLSGSVPSELRG----LRSLQKFVIGNN 296
N L SVP G L SLQ + +N
Sbjct: 132 YQNQLK-SVP---DGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 130 PGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQL 189
P IP LDL + S+ + LT+LT LYL N L +L
Sbjct: 23 PTGIPA-------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75
Query: 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNN 248
+ L+ L+LS N L F L L L +++N L S+P G+ L++L+ L + N
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134
Query: 249 SLASSIPAQLGDLDSLVDL 267
L S+P G D L L
Sbjct: 135 QL-KSVPD--GVFDRLTSL 150
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 504 AGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVI 563
+L G + N + + + Q L G FS +L++ H G +
Sbjct: 13 GRENLYFQGHMVIIDN--KHYLFIQKLG-EGGFSYVDLVEGLHDGHF----------YAL 59
Query: 564 KRIDLQSVKTEAYLL-ELDFFSKVSHARLVPLLGHCMERENEK---FLVYKYMPNGDLSS 619
KRI + E D +H ++ L+ +C+ K +L+ + G L +
Sbjct: 60 KRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWN 119
Query: 620 SLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679
+ R + + L + D I L + +G GL +H + + HRD++ ++ILL D+ +
Sbjct: 120 EIERLKDKGNFL-TEDQI--LWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQP 173
Query: 680 RLG 682
L
Sbjct: 174 VLM 176
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 545 GHSGDLFRGILEG-----GIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
GH G + + G V +K + D + E+D + H ++ G
Sbjct: 42 GHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGC 101
Query: 598 CMERENEK-FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
C + LV +Y+P G L L R + L L A EG++YLH
Sbjct: 102 CEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQL--------LLFAQQICEGMAYLH-- 151
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
++HRD+ A ++LLD+ V++G
Sbjct: 152 -AQHYIHRDLAARNVLLDNDRLVKIG 176
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 545 GHSGDLFRGIL----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G GD+ +GI + V IK + E +L E + H +V L+G
Sbjct: 26 GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI 85
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
E N +++ + G+L S L + DL SL + A + L+YL +
Sbjct: 86 TE--NPVWIIMELCTLGELRSFL-QVRKYSLDLASL-----ILYAYQLSTALAYLESKR- 136
Query: 659 LPFVHRDVQASSILLDDKFEVRLG 682
FVHRD+ A ++L+ V+LG
Sbjct: 137 --FVHRDIAARNVLVSSNDCVKLG 158
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 20/145 (13%)
Query: 545 GHSGDLFRGIL---EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
G+ G + +G+ + I V IK + + TE + E ++ + +V L+G C
Sbjct: 21 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ 80
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHEC 657
LV + G L L + + ++ + G+ YL +
Sbjct: 81 AEAL--MLVMEMAGGGPLHKFL-VGKR-----EEIPVSNVAELLHQVSMGMKYLEEKN-- 130
Query: 658 TLPFVHRDVQASSILLDDKFEVRLG 682
FVHRD+ A ++LL ++ ++
Sbjct: 131 ---FVHRDLAARNVLLVNRHYAKIS 152
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 138 GQQLPTLQALDLRSCSIS-GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196
+ ++ L L + + G + L L + GLT +I ++L +L+ L L+
Sbjct: 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLE 70
Query: 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLT--GSIPPGLGTLSKLQYLNVSNN 248
LS N ++G + NL+ L++S N + +I P L L L+ L++ N
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-10
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 34/162 (20%)
Query: 183 PSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQY 242
PS + +L VLD SR++ G + + L L + LT SI L L+KL+
Sbjct: 16 PSDVKEL----VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKK 68
Query: 243 LNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302
L +S+N ++ + +L L+LS N + S + L+ L+
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLEN------------ 114
Query: 303 SVNLFPTVSQLQIIVLRQNGFTGPP---PDVLWSMPQLRLLD 341
L+ + L T +V +PQL LD
Sbjct: 115 ----------LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 137 LGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196
L + L+ L + ++ + L L L LSDN ++G + + L+ L+
Sbjct: 37 LTDEFEELEFLSTINVGLTSIANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94
Query: 197 LSRNSLTG-NIPTSFGLLKNLSSLDISSN 224
LS N + + L+NL SLD+ +
Sbjct: 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 9e-11
Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 28/181 (15%)
Query: 533 TGDFSDANLIKNGHS--GDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL---ELDFFSKV 586
G + +I G + G V ++RI+L++ E EL
Sbjct: 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF 83
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNG---DLSSSLYRKTNTEDDLQSLDWITRLKIA 643
+H +VP +NE ++V +M G DL + + E IA
Sbjct: 84 NHPNIVPYRA-TFIADNELWVVTSFMAYGSAKDLICTHFMDGMNEL-----------AIA 131
Query: 644 I---GAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRIT 700
G + L Y+HH +VHR V+AS IL+ +V L L Q +
Sbjct: 132 YILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLR-SNLSMISHGQRQRV 187
Query: 701 R 701
Sbjct: 188 V 188
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 52/252 (20%), Positives = 79/252 (31%), Gaps = 30/252 (11%)
Query: 143 TLQALDLRSCSIS--GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQL-----SVLSVL 195
L ++L SC + G+ L L N L L L ++ L
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPV-FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160
Query: 196 DLSRNSLT--GNIPTSFGLLKN--LSSLDISSNYLT----GSIPPGLGTLSKLQYLNVSN 247
LS N LT G GL N ++ L + L + L +LQ LNV+
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220
Query: 248 NSL----ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303
N A ++ + SL L L N LS + LR L G + +L+
Sbjct: 221 NGAGDTAALALARAAREHPSLELLHLYFNELS---SEGRQVLRDLGGAAEGGARVVVSLT 277
Query: 304 VNLFPTVSQLQII--VLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSN---V 358
+ I+ V R + +L L D+ + P ++ V
Sbjct: 278 EGTAVSEYWSVILSEVQRNL--NSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRV 335
Query: 359 NTSTVELNISQN 370
L
Sbjct: 336 EGEVRALLEQLG 347
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 34/184 (18%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
G F L+ NG G +++G ++ G IK +D+ + E E++ K SH R
Sbjct: 23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN 82
Query: 592 VP------LLGHCMERENEKFLVYKYMPNG---DLSSSLYRKTNTEDDLQSLDWITRLKI 642
+ + + +++ +LV ++ G DL + T E+ I
Sbjct: 83 IATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEE-----------WI 131
Query: 643 AI---GAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQ 696
A GLS+LH +HRD++ ++LL + EV+L G V AQ
Sbjct: 132 AYICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFG----VSAQLDRTVG 184
Query: 697 SRIT 700
R T
Sbjct: 185 RRNT 188
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 545 GHSGDLFRGIL-----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
G G++++G+L + +PV IK + + +L E + SH ++ L G
Sbjct: 55 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGV 114
Query: 598 CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
+ + ++ +YM NG L L R+ + E + L + + G A G+ YL +
Sbjct: 115 ISKYKP-MMIITEYMENGALDKFL-REKDGEFSVLQL-----VGMLRGIAAGMKYLANMN 167
Query: 658 TLPFVHRDVQASSILLDDKFEVRLG 682
+VHRD+ A +IL++ ++
Sbjct: 168 ---YVHRDLAARNILVNSNLVCKVS 189
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 21/146 (14%)
Query: 545 GHSGDLFRGILEGG----IPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G G+++ G+ I V +K + D E ++ E + H +V L+G
Sbjct: 23 GFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGII 82
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHE 656
E +++ + P G+L L + + +L + ++ + ++YL +
Sbjct: 83 EE--EPTWIIMELYPYGELGHYL-ERNKNSLKVLTL-----VLYSLQICKAMAYLESIN- 133
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
VHRD+ +IL+ V+LG
Sbjct: 134 ----CVHRDIAVRNILVASPECVKLG 155
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
+ G G++ R + G +K++ L+ + E EL + +S R+VPL G
Sbjct: 64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVE----ELVACAGLSSPRIVPLYG-- 117
Query: 599 MERENEKFLVY-KYMPNGDLSSSLYRKTNTEDDLQSLDWITR--LKIAIGAAEGLSYLHH 655
RE ++ + + G L L ++ + ++L + L EGL YLH
Sbjct: 118 AVREGPWVNIFMELLEGGSLGQ-LIKQMGCLPEDRAL-YYLGQAL-------EGLEYLHT 168
Query: 656 ECTLPFVHRDVQASSILLDDK 676
+H DV+A ++LL
Sbjct: 169 RRI---LHGDVKADNVLLSSD 186
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 545 GHSGDLFRGIL----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G SG++ G L + +PV IK + + +L E + H ++ L G
Sbjct: 60 GDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV 119
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
+V +YM NG L + + +T+ + + + G G+ YL
Sbjct: 120 TRGR-LAMIVTEYMENGSLDT--FLRTHDG----QFTIMQLVGMLRGVGAGMRYLSDLG- 171
Query: 659 LPFVHRDVQASSILLDDKFEVRLG 682
+VHRD+ A ++L+D ++
Sbjct: 172 --YVHRDLAARNVLVDSNLVCKVS 193
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 545 GHSGDLFRGILEGG------IPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
G G+++ G + G + V +K +L+E SK +H +V +G
Sbjct: 41 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 100
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--H 654
++ +F++ + M GDL S L SL + L +A A G YL +
Sbjct: 101 VSLQSL-PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 159
Query: 655 HECTLPFVHRDVQASSILLDDKFE 678
H F+HRD+ A + LL
Sbjct: 160 H-----FIHRDIAARNCLLTCPGP 178
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 18/145 (12%)
Query: 545 GHSGDLFRGIL-----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
G G +++G+ + IPV IK R + L E + V + + LLG
Sbjct: 26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGI 85
Query: 598 CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
C+ + L+ + MP G L + R+ Q L L + A+G++YL
Sbjct: 86 CLT--STVQLITQLMPFGCLLDYV-REHKDNIGSQYL-----LNWCVQIAKGMNYLEDRR 137
Query: 658 TLPFVHRDVQASSILLDDKFEVRLG 682
VHRD+ A ++L+ V++
Sbjct: 138 ---LVHRDLAARNVLVKTPQHVKIT 159
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 545 GHSGDLFRGILEG-----GIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
GH G + + G V +K + + E++ + H +V G
Sbjct: 32 GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGI 91
Query: 598 CMERENEK-FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
C E L+ +++P+G L L + N + Q L + A+ +G+ YL
Sbjct: 92 CTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKY------AVQICKGMDYLG-- 143
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
+ +VHRD+ A ++L++ + +V++G
Sbjct: 144 -SRQYVHRDLAARNVLVESEHQVKIG 168
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 16/152 (10%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV-KTEAYLL--ELDFFSKVSHARLVPLLG 596
I G +++G+ E + V + + + K+E E + + H +V
Sbjct: 33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92
Query: 597 HCMERENEKFLVY---KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
K + + M +G L + ++ W ++ +GL +L
Sbjct: 93 SWESTVKGKKCIVLVTELMTSGTLKT-YLKRFKVMKIKVLRSWCRQI------LKGLQFL 145
Query: 654 HHECTLPFVHRDVQASSILLDDKF-EVRLGSL 684
H T P +HRD++ +I + V++G L
Sbjct: 146 H-TRTPPIIHRDLKCDNIFITGPTGSVKIGDL 176
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 40/245 (16%)
Query: 143 TLQALDLRSCSIS--GVIPFS---LGNLTNLTSLYLSDNGLTGTIPSSLGQL-----SVL 192
++ +L+L S+ N+TSL LS N L+ L + +
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 193 SVLDLSRNSLT--GNIPTSFGLLKN---LSSLDISSNYLTG----SIPPGLGTL-SKLQY 242
+VLDL N + + ++SL++ N L + L + + +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 243 LNVSNNSL----ASSIPAQLGDLD-SLVDLDLSMNSLSGSVPSEL-RGLRS----LQKFV 292
LN+ N+L + + L + S+ LDLS N L +EL S +
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231
Query: 293 IGNNFLSG---NLSVNLFPTVSQLQIIVLRQNGFTGPPPD-------VLWSMPQLRLLDI 342
+ N L G L ++ LQ + L + + ++ ++ L+D
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291
Query: 343 SRNNF 347
+
Sbjct: 292 NGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 26/165 (15%)
Query: 137 LGQQLPTLQALDLRSCSIS--GVIPFSLG---NLTNLTSLYLSDNGLTGTIPSSLGQL-- 189
++ +L+LR + N+ SL L N L + L +
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192
Query: 190 ---SVLSVLDLSRNSLT--GNIPTSFGLLKN---LSSLDISSNYLTGS----IPPGLGTL 237
+ ++ LDLS N L ++ + SL++ N L G + +L
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
Query: 238 SKLQYLNVSNNSL-------ASSIPAQLGDLDSLVDLDLSMNSLS 275
LQ + + + + ++ A ++ ++ +D + +
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 21/155 (13%)
Query: 143 TLQALDLRSCSIS--GVIPFSLG---NLTNLTSLYLSDNGLTGTIPSSLGQL-----SVL 192
+ +L+LR +++ + ++TSL LS N L + L + + +
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 193 SVLDLSRNSLTG----NIPTSFGLLKNLSSLDISSNYLTG-------SIPPGLGTLSKLQ 241
L+L N L G N+ LK+L ++ + + + ++ + K+
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 242 YLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276
++ + + S + +L + + SL
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 47/252 (18%), Positives = 85/252 (33%), Gaps = 45/252 (17%)
Query: 162 LGNLTNLTSLYLSDNGLTGTIPSSLGQL-----SVLSVLDLSRNSLT--GNIPTSFGLLK 214
+TSL LS N L L Q + ++ L+LS NSL + L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 215 N---LSSLDISSNYLTGSIPPGLGTLSK--------LQYLNVSNNSL----ASSIPAQLG 259
++SL++S N+L+ L K + L++ N +S
Sbjct: 78 IPANVTSLNLSGNFLSYK---SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 260 DLD-SLVDLDLSMNSLSGSVPSEL-RGLR----SLQKFVIGNNFLSGN----LSVNLFPT 309
+L S+ L+L N L EL + L ++ + N L+ L+ L
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194
Query: 310 VSQLQIIVLRQNGFTGPPPDVLWSM-----PQLRLLDISRNNFTGP----LPNSRSNVNT 360
+ + + L N L + + L++ N GP L + +
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS-LK 253
Query: 361 STVELNISQNMF 372
+ + ++
Sbjct: 254 HLQTVYLDYDIV 265
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 19/155 (12%), Positives = 43/155 (27%), Gaps = 37/155 (23%)
Query: 137 LGQQLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192
+ +L+L + G + +L +L ++YL + + L
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG-- 277
Query: 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLS--------KLQYLN 244
+F ++ + +D + + P +S K +
Sbjct: 278 ---------------AAFPNIQKIILVDKNGKEIH---PSHSIPISNLIRELSGKADVPS 319
Query: 245 VSNNSL-----ASSIPAQLGDLDSLVDLDLSMNSL 274
+ N L + L D L + + L
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 545 GHSGDLFRGIL-----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
G G + +G+ IPV IK +A + + HA +V LLG
Sbjct: 24 GVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGL 83
Query: 598 CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
C LV +Y+P G L + R+ Q L L + A+G+ YL
Sbjct: 84 CPGSSL--QLVTQYLPLGSLLDHV-RQHRGALGPQLL-----LNWGVQIAKGMYYLEEHG 135
Query: 658 TLPFVHRDVQASSILLDDKFEVRLG 682
VHR++ A ++LL +V++
Sbjct: 136 ---MVHRNLAARNVLLKSPSQVQVA 157
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLS 198
+L L L L + + LTNL L L +N L ++P + +L+ L+ L+L+
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLA 141
Query: 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQ 257
N L F L NL+ LD+S N L S+P G+ L++L+ L + N L S+P
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL-KSVPD- 198
Query: 258 LGDLDSLVDL 267
G D L L
Sbjct: 199 -GVFDRLTSL 207
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202
+L+ S++ + + L ++ + +++ + ++ + L + L L N L
Sbjct: 20 ETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKL 75
Query: 203 TGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD- 260
+I + L NL+ L ++ N L S+P G+ L+ L+ L + N L S +P + D
Sbjct: 76 H-DIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDK 131
Query: 261 LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ 320
L +L L+L+ N L S+P +F ++ L + L
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPK------------------------GVFDKLTNLTELDLSY 166
Query: 321 NGFTGPPPDVLWSMPQLRLLDISRN 345
N P V + QL+ L + +N
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 37/157 (23%)
Query: 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI 254
+L + S+T + + L ++ + +++ + G+ L ++YL + N L
Sbjct: 24 ANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-- 77
Query: 255 PAQLGDLDSLVD---LDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVS 311
+ L L + L L+ N L +L +F ++
Sbjct: 78 ---ISALKELTNLTYLILTGNQLQ-------------------------SLPNGVFDKLT 109
Query: 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348
L+ +VL +N P V + L L+++ N
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 4e-10
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 545 GHSGDLFRGILEGG---IPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
G+ G + +G+ I V IK + + TE + E ++ + +V L+G C
Sbjct: 347 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ 406
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTL 659
LV + G L + E + ++ + G+ YL +
Sbjct: 407 AEAL--MLVMEMAGGGPLHK--FLVGKRE----EIPVSNVAELLHQVSMGMKYLEEKN-- 456
Query: 660 PFVHRDVQASSILLDDKFEVRLG 682
FVHR++ A ++LL ++ ++
Sbjct: 457 -FVHRNLAARNVLLVNRHYAKIS 478
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 545 GHSGDLFRGILEGG------IPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
G G+++ G + G + V +K +L+E SK +H +V +G
Sbjct: 82 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 141
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--H 654
++ +F++ + M GDL S L SL + L +A A G YL +
Sbjct: 142 VSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 200
Query: 655 HECTLPFVHRDVQASSILLDDKFE 678
H F+HRD+ A + LL
Sbjct: 201 H-----FIHRDIAARNCLLTCPGP 219
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 22/143 (15%)
Query: 545 GHSGDLFRGILEGG---IPVVIKRI---DLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G+ G + +G + V +K + + L E + ++ + +V ++G C
Sbjct: 28 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC 87
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHE 656
LV + G L+ L + + + +++ + G+ YL +
Sbjct: 88 EA--ESWMLVMEMAELGPLNKYLQQN-------RHVKDKNIIELVHQVSMGMKYLEESN- 137
Query: 657 CTLPFVHRDVQASSILLDDKFEV 679
FVHRD+ A ++LL +
Sbjct: 138 ----FVHRDLAARNVLLVTQHYA 156
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 545 GHSGDLFRGILEGG------IPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
G G ++ G+ +G V IK + +L E + + +V LLG
Sbjct: 36 GSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLG 95
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITR---LKIAIGAAEGLSYL 653
+ ++ + M GDL S L + L + +++A A+G++YL
Sbjct: 96 VVS-QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYL 154
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ FVHRD+ A + ++ + F V++G
Sbjct: 155 N---ANKFVHRDLAARNCMVAEDFTVKIG 180
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 25/176 (14%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHAR 590
+ + +G G +++ E G K I+ +S + E Y++E++ + H
Sbjct: 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY 77
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI---GAA 647
+V LLG + + +++ ++ P G + + + + Q I +
Sbjct: 78 IVKLLG-AYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQ---------IQVVCRQML 127
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRIT 700
E L++LH + + HRD++A ++L+ + ++RL G V A+ Q R +
Sbjct: 128 EALNFLHSKRII---HRDLKAGNVLMTLEGDIRLADFG----VSAKNLKTLQKRDS 176
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 7e-10
Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 184 SSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYL 243
+ LDL + I L ++D S N + + G L +L+ L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69
Query: 244 NVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303
V+NN + L L +L L+ NSL EL L L
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSL-----VELGDLDPLASL------------ 112
Query: 304 VNLFPTVSQLQIIVLRQNGFTGPP---PDVLWSMPQLRLLD 341
L + + +N T V++ +PQ+R+LD
Sbjct: 113 -------KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 137 LGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196
LG L A+D I + F L L +L +++N + L L+ L
Sbjct: 37 LGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94
Query: 197 LSRNSLTG-NIPTSFGLLKNLSSLDISSN 224
L+ NSL LK+L+ L I N
Sbjct: 95 LTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 7e-10
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNN 248
S L +R+ + +NL+ L I + + L L +L+ L + +
Sbjct: 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 249 SLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFL 298
L + L L+LS N+L S+ + SLQ+ V+ N L
Sbjct: 67 GL-RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIP-FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLS 190
L L L + + + L L L +L + +GL P +
Sbjct: 22 DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80
Query: 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT 227
LS L+LS N+L + L +L L +S N L
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 214 KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMN 272
S L + + L L L + N + + L L L +L + +
Sbjct: 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 273 SLSGSVPSE-LRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFT 324
L V + L + + N L +LS +S LQ +VL N
Sbjct: 67 GLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 9e-07
Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 23/131 (17%)
Query: 75 CLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHL--ASFNASRFLLPGS 132
+G+RC R NLT L + + L
Sbjct: 7 PHGSSGLRCT-------------RDGALDSLHHLPG--AENLTELYIENQQHLQHLELRD 51
Query: 133 IPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192
+ + L L+ L + + V P + L+ L LS N L ++ Q L
Sbjct: 52 L-----RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSL 105
Query: 193 SVLDLSRNSLT 203
L LS N L
Sbjct: 106 QELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-06
Identities = 16/96 (16%), Positives = 36/96 (37%)
Query: 271 MNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV 330
+ L G +L + I N +L + + +L+ + + ++G PD
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 331 LWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELN 366
P+L L++S N + ++ + L+
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 545 GHSGDLFRGIL----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G G++ G L + I V IK ++ + +L E + H ++ L G
Sbjct: 56 GEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV 115
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
+ + +V +YM NG L S L + I + + G A G+ YL
Sbjct: 116 TKSKP-VMIVTEYMENGSLDSFLRKHDA------QFTVIQLVGMLRGIASGMKYLSDMG- 167
Query: 659 LPFVHRDVQASSILLDDKFEVRLG 682
+VHRD+ A +IL++ ++
Sbjct: 168 --YVHRDLAARNILINSNLVCKVS 189
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 18/145 (12%)
Query: 545 GHSGDLFRGIL-----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
G G +++G+ + IPV IK R + L E + V + + LLG
Sbjct: 26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGI 85
Query: 598 CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
C+ + L+ + MP G L + R+ Q L L + A+G++YL
Sbjct: 86 CLT--STVQLITQLMPFGCLLDYV-REHKDNIGSQYL-----LNWCVQIAKGMNYLEDRR 137
Query: 658 TLPFVHRDVQASSILLDDKFEVRLG 682
VHRD+ A ++L+ V++
Sbjct: 138 ---LVHRDLAARNVLVKTPQHVKIT 159
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 27/176 (15%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS-VKTEAYLLELDFFSKVSHAR 590
++ I G SG ++ + + G V I++++LQ K E + E+ + +
Sbjct: 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE-- 648
+V L +E ++V +Y+ G L+ + E +IA E
Sbjct: 79 IVNYLD-SYLVGDELWVVMEYLAGGSLTDVVTETCMDEG-----------QIAAVCRECL 126
Query: 649 -GLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRIT 700
L +LH +HRD+++ +ILL V+L G CAQ R T
Sbjct: 127 QALEFLHSNQV---IHRDIKSDNILLGMDGSVKLTDFG----FCAQITPEQSKRST 175
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 34/201 (16%), Positives = 75/201 (37%), Gaps = 33/201 (16%)
Query: 491 TPNQRGVGVGPVPAGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDL 550
+G+ PVP + + L +F ++ + G FS+ G
Sbjct: 2 DEQSQGMQGPPVPQFQPQKALRPDMGYNTL-ANFRIEKKIG-RGQFSEVYRAACLLDGVP 59
Query: 551 FRGILEGGIPVVIKRIDLQSVKT----EAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606
V +K++ + + + E+D +++H ++ +E +NE
Sbjct: 60 ----------VALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-DNELN 108
Query: 607 LVYKYMPNGDLSSSL--YRKTNT---EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661
+V + GDLS + ++K E + + +L L ++H +
Sbjct: 109 IVLELADAGDLSRMIKHFKKQKRLIPERTV--WKYFVQL------CSALEHMHSRRVM-- 158
Query: 662 VHRDVQASSILLDDKFEVRLG 682
HRD++ +++ + V+LG
Sbjct: 159 -HRDIKPANVFITATGVVKLG 178
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 22/174 (12%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL--ELDFFSKVSHA 589
F+ I G G++F+GI V IK IDL+ + E + E+ S+
Sbjct: 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSP 80
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI---GA 646
+ G ++ + +++ +Y+ G L E +IA
Sbjct: 81 YVTKYYG-SYLKDTKLWIIMEYLGGGSALDLLEPGPLDET-----------QIATILREI 128
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRIT 700
+GL YLH E + HRD++A+++LL + EV+L V Q D R T
Sbjct: 129 LKGLDYLHSEKKI---HRDIKAANVLLSEHGEVKLADFG-VAGQLTDTQIKRNT 178
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 2e-09
Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSIS--GVIPFSLGNLTN 167
+ L + L + + + + P L++L++ S + V +L N
Sbjct: 165 SPVLDAMPLLNNLK----IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220
Query: 168 LTSLYL---SDNGLTGTIPSSL------GQLSVLSVLDLSRNSLTGNIPTSFG---LLKN 215
L L L ++ + + L L + + F +L
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 216 LSSLDISSNYLTGS----IPPGLGTLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLD 268
L ++DIS+ LT + + + L+++N+ N L+ + +L L +D+
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 2e-08
Identities = 34/277 (12%), Positives = 74/277 (26%), Gaps = 28/277 (10%)
Query: 34 FEPTFEQQLERLSSRTELAALFELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINI 93
++ ++ T E++ + + + + + +
Sbjct: 53 AGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLP-SLKQ 111
Query: 94 SGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDW---------LGQQLPTL 144
++ AD +V + F + L L +
Sbjct: 112 ITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171
Query: 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLG--QLSVLSVLDLSRNSL 202
L+ + + NL SL + GL ++ + L L L L
Sbjct: 172 PLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231
Query: 203 TGNIPTSFGLL---------KNLSSLDISSNYLTGSIPPGLGT---LSKLQYLNVSNNSL 250
+ NL L I + L +L+ +++S L
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291
Query: 251 ----ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELR 283
A + + + L +++ N LS + EL+
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 9e-06
Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 29/212 (13%)
Query: 151 SCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL----DLSRNSLTGNI 206
I+ I + + L+ D S + Q+ + VL L+ + G
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183
Query: 207 PTSFGLLK--NLSSLDISSNYLTGSIPPGLGT--LSKLQYLNVSNNSLASSIPAQLGDLD 262
S G NL SL+I S L S+ + L L+ L + +
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243
Query: 263 SLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLF--PTVSQLQIIVLRQ 320
L +L+ I + + + QL+ + +
Sbjct: 244 PLF---------------SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288
Query: 321 NGFTGPP----PDVLWSMPQLRLLDISRNNFT 348
T D + + L+ +++ N +
Sbjct: 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 548 GDLFRGILEGGIP------VVIKRIDLQSVKTEAYLL-ELDFFSKVSHARLVPLLGHCME 600
G +F P V +K + ++ E + + + H +V G C +
Sbjct: 29 GKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGD 88
Query: 601 RENEKFLVYKYMPNGDL---------SSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
+ +V++YM +GDL + + L L IA A G+
Sbjct: 89 GDP-LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMV 147
Query: 652 YL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
YL H FVHRD+ + L+ V++G
Sbjct: 148 YLASQH-----FVHRDLATRNCLVGANLLVKIG 175
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Query: 545 GHSGDLFRGILEG-----GIPVVIKRI------DLQSVKTEAYLLELDFFSKVSHARLVP 593
G+ G + + G V +K++ L+ + E +L + H +V
Sbjct: 52 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL-----KSLQHDNIVK 106
Query: 594 LLGHCMERENEK-FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
G C L+ +Y+P G L L + + +D I L+ +G+ Y
Sbjct: 107 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK------ERIDHIKLLQYTSQICKGMEY 160
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L + ++HRD+ +IL++++ V++G
Sbjct: 161 LGTKR---YIHRDLATRNILVENENRVKIG 187
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 545 GHSGDLFRGILEG-----GIPVVIKRI------DLQSVKTEAYLLELDFFSKVSHARLVP 593
G+ G + + G V +K++ L+ + E +L + H +V
Sbjct: 21 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL-----KSLQHDNIVK 75
Query: 594 LLGHCMERENE-KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
G C L+ +Y+P G L L + D ++ L + +G+ Y
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQY------TSQICKGMEY 129
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L T ++HRD+ +IL++++ V++G
Sbjct: 130 LG---TKRYIHRDLATRNILVENENRVKIG 156
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 545 GHSGDLFRGILEGG----IPVVIKRI----DLQSVKTEAYLLELDFFSKVSHARLVPLLG 596
G G + RG + + V +K + Q + ++ E++ + H L+ L G
Sbjct: 29 GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYG 88
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
+ +V + P G L L RK L +L + A+ AEG+ YL +
Sbjct: 89 VVLT--PPMKMVTELAPLGSLLDRL-RKHQGHFLLGTL-----SRYAVQVAEGMGYLESK 140
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
F+HRD+ A ++LL + V++G
Sbjct: 141 R---FIHRDLAARNLLLATRDLVKIG 163
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 545 GHSGDLFRGIL----EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G GD+ +GI + V IK + E +L E + H +V L+G
Sbjct: 401 GQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI 460
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHE 656
E N +++ + G+L S L + SLD + + A + L+YL
Sbjct: 461 TE--NPVWIIMELCTLGELRSFLQVRKF------SLDLASLILYAYQLSTALAYLESKR- 511
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG 682
FVHRD+ A ++L+ V+LG
Sbjct: 512 ----FVHRDIAARNVLVSSNDCVKLG 533
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 13/162 (8%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL--ELDFFSKVSHARL 591
D+ +I +G + + V IKRI+L+ +T L E+ S+ H +
Sbjct: 16 DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI 75
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE--- 648
V ++E +LV K + G + + K + IA E
Sbjct: 76 VSYYT-SFVVKDELWLVMKLLSGGSVLDII--KHIVAKGEHKSGVLDESTIATILREVLE 132
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690
GL YLH +HRDV+A +ILL + V++ V A
Sbjct: 133 GLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADF-GVSAF 170
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 545 GHSGDLFRGILEG-----GIPVVIKRI-DLQSVKTEAYLLELDFFSKVSHARLVPLLGHC 598
G+ G + + G V +K++ + + E+ + +V G
Sbjct: 34 GNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVS 93
Query: 599 MERENE-KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
+ LV +Y+P+G L L ++ D L L + +G+ YL
Sbjct: 94 YGPGRQSLRLVMEYLPSGCLRDFL-QRHRARLDASRL-----LLYSSQICKGMEYLGSRR 147
Query: 658 TLPFVHRDVQASSILLDDKFEV 679
VHRD+ A +IL++ + V
Sbjct: 148 ---CVHRDLAARNILVESEAHV 166
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTE--AYLLELDFFSKVSHARL 591
DF + + G+ G +F+ G+ + K I L+ + EL + + +
Sbjct: 34 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 93
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNT--EDDLQSLDWITRLKIAIGAAEG 649
V G + E + ++M G L + +K E L K++I +G
Sbjct: 94 VGFYG-AFYSDGEISICMEHMDGGSLDQ-VLKKAGRIPEQILG--------KVSIAVIKG 143
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
L+YL + + +HRDV+ S+IL++ + E++L
Sbjct: 144 LTYLREKHKI--MHRDVKPSNILVNSRGEIKL 173
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 25/158 (15%)
Query: 545 GHSGDLFRGIL------EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKV-SHARLVPLL 595
G G + V +K + + A + EL + H +V LL
Sbjct: 38 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97
Query: 596 GHCMERENEKFLVYKYMPNGDLSSSL---------YRKTNTEDDLQSLDWITRLKIAIGA 646
G C + ++ ++ G+LS+ L Y+ + L + +
Sbjct: 98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQV 157
Query: 647 AEGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
A+G+ +L +HRD+ A +ILL +K V++
Sbjct: 158 AKGMEFLASRK-----CIHRDLAARNILLSEKNVVKIC 190
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 25/175 (14%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
F + G G +++ I E G V IK++ ++S + + E+ + +
Sbjct: 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHV 86
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI---GAAE 648
V G + + ++V +Y G +S + + T + + IA +
Sbjct: 87 VKYYG-SYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDE---------IATILQSTLK 136
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRIT 700
GL YLH +HRD++A +ILL+ + +L G V Q D R T
Sbjct: 137 GLEYLHFMRK---IHRDIKAGNILLNTEGHAKLADFG----VAGQLTDTMAKRNT 184
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 39/163 (23%)
Query: 545 GHSGDLFRGILEGGIP------VVIK---------RIDLQSVKTEAYLLELDFFSKVSHA 589
G G +F +P V +K R D Q EA LL + + H
Sbjct: 52 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR---EAELL-----TMLQHQ 103
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSL--------YRKTNTEDDLQSLDWITRLK 641
+V G C E +V++YM +GDL+ L + L L
Sbjct: 104 HIVRFFGVCTEGRP-LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLA 162
Query: 642 IAIGAAEGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+A A G+ YL H FVHRD+ + L+ V++G
Sbjct: 163 VASQVAAGMVYLAGLH-----FVHRDLATRNCLVGQGLVVKIG 200
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 166 TNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
+ T L L+DN L L G+L L L+L RN LTG P +F ++ L + N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 225 YLTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDL 267
+ I + L +L+ LN+ +N + S + G + L L
Sbjct: 89 KIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMP--GSFEHLNSL 128
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 26/116 (22%)
Query: 134 PDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193
D L +LP L L+L+ ++G+ P + +++ L L +N + I + +
Sbjct: 46 SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKM------- 97
Query: 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNN 248
F L L +L++ N ++ + PG L+ L LN+++N
Sbjct: 98 ----------------FLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLV 592
G F +N IK+I K L E+ + ++H +V
Sbjct: 16 QGAFGQVVKARNALDSRY----------YAIKKIRHTEEKLSTILSEVMLLASLNHQYVV 65
Query: 593 PLLGHCMERENEK------------FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRL 640
+ER N F+ +Y NG L ++ + + + ++
Sbjct: 66 RYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQI 125
Query: 641 KIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
E LSY+H + +HRD++ +I +D+ V++G
Sbjct: 126 ------LEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIG 158
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 27/176 (15%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS-VKTEAYLLELDFFSKVSHAR 590
I G +G + G V +K +DL+ + E E+ H
Sbjct: 44 RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE-- 648
+V + E +++ +++ G L+ + + E+ IA
Sbjct: 104 VVEMYK-SYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQ-----------IATVCEAVL 151
Query: 649 -GLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRIT 700
L+YLH + +HRD+++ SILL V+L G CAQ R +
Sbjct: 152 QALAYLHAQGV---IHRDIKSDSILLTLDGRVKLSDFG----FCAQISKDVPKRKS 200
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 41/165 (24%)
Query: 545 GHSGDLFRGILEGG------IPVVIK----------RIDLQSVKTEAYLLELDFFSKVSH 588
G +++G L G V IK R + + EA L +++ H
Sbjct: 20 DRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRH---EAMLR-----ARLQH 71
Query: 589 ARLVPLLGHCMERENEKFLVYKYMPNGDL---------SSSLYRKTNTEDDLQSLDWITR 639
+V LLG ++ +++ Y +GDL S + + +L+
Sbjct: 72 PNVVCLLGVVT-KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDF 130
Query: 640 LKIAIGAAEGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ + A G+ YL HH VH+D+ ++L+ DK V++
Sbjct: 131 VHLVAQIAAGMEYLSSHH-----VVHKDLATRNVLVYDKLNVKIS 170
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHAR 590
G F A L+K+ G VIK I++ + E E+ + + H
Sbjct: 35 GSFGKAILVKSTEDGRQ----------YVIKEINISRMSSKEREESRREVAVLANMKHPN 84
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNT---EDDLQSLDWITRLKIAIGAA 647
+V E ++V Y GDL + + ED + LDW ++
Sbjct: 85 IVQYRESFEE-NGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQI--LDWFVQI------C 135
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L ++H L HRD+++ +I L V+LG
Sbjct: 136 LALKHVHDRKIL---HRDIKSQNIFLTKDGTVQLG 167
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 23/152 (15%)
Query: 545 GHSGDLFRGILEGG---IPVVIKRI--DLQSVKTEAYLLELDFFSKV-SHARLVPLLGHC 598
G+ G + + ++ + IKR+ + EL+ K+ H ++ LLG C
Sbjct: 36 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 95
Query: 599 MERENEKFLVYKYMPNGDL---------SSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
R +L +Y P+G+L + +L L A A G
Sbjct: 96 EHRG-YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARG 154
Query: 650 LSYL--HHECTLPFVHRDVQASSILLDDKFEV 679
+ YL F+HRD+ A +IL+ + +
Sbjct: 155 MDYLSQKQ-----FIHRDLAARNILVGENYVA 181
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHAR 590
G + I+ G + V K +D S+ + + E++ ++ H
Sbjct: 17 GSYGRCQKIRRKSDGKIL----------VWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 66
Query: 591 LVPLLGHCMERENEKF-LVYKYMPNGDLSSSLYRKTNTEDDL---QSLDWITRLKIAIGA 646
+V ++R N +V +Y GDL+S + + T L L +T+L
Sbjct: 67 IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL------ 120
Query: 647 AEGLSYLHHECTLPF--VHRDVQASSILLDDKFEVRLG 682
L H +HRD++ +++ LD K V+LG
Sbjct: 121 TLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG 158
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 45/263 (17%), Positives = 88/263 (33%), Gaps = 20/263 (7%)
Query: 100 RLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDW---LGQQLPTLQALDLRSCSIS- 155
RL + P + L A FN G + W + L L+++ R +S
Sbjct: 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD 126
Query: 156 -GVIPFSLGNLTNLTSLYLSD-NGLTGTIPSSLGQ-LSVLSVLDLSRNSLTGNIPTSFGL 212
+ + +L +L L +G T S+ + L + +S +
Sbjct: 127 LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186
Query: 213 L----KNLSSLDISSNYLTGSIPPGLGTLSK----LQYLNVSNNSLAS--SIPAQLGDLD 262
L +L L+ P L T+++ L + V + + +L+
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246
Query: 263 SLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ-N 321
L+ + L R L + +G +++ N LFP +Q++ + L
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCR--LGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304
Query: 322 GFTGPPPDVLWSMPQLRLLDISR 344
T ++ P L +L+
Sbjct: 305 LETEDHCTLIQKCPNLEVLETRN 327
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 27/181 (14%)
Query: 137 LGQQLPTLQALDLRSCSISGVIPFSLGNLT------------NLTSLYLSDNGLT----G 180
L Q L+ L + + + G ++ L + + + +T
Sbjct: 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396
Query: 181 TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGL------LKNLSSLDISSNY--LTGSIPP 232
+I + L L ++ L R ++P G+ K L LT
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456
Query: 233 GLGTLSK-LQYLNVSNNSL-ASSIPAQLGDLDSLVDLDLSMNSLS-GSVPSELRGLRSLQ 289
+G S ++++ + + +L L++ S ++ + + L SL+
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516
Query: 290 K 290
Sbjct: 517 Y 517
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 35/253 (13%), Positives = 79/253 (31%), Gaps = 36/253 (14%)
Query: 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSC-SISGVIPFSLGNLTNLTSLYL 173
+ + LL L Q+ P L+ L+ R+ G+ + L L +
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ-YCKQLKRLRI 349
Query: 174 SDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT----GS 229
+ G +S ++ L++ + L + + + +T S
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQG------------CQELEYMAVYVSDITNESLES 397
Query: 230 IPPGLGTLSKLQYLNVSNNS------LASSIPAQLGDLDSLVDLDLSMNS--LSGSVPSE 281
I L L + + + L + + + L L + L+ S
Sbjct: 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457
Query: 282 L-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD-----VLWSMP 335
+ + +++ ++G S + LQ + +R F+ + + +P
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS----ERAIAAAVTKLP 513
Query: 336 QLRLLDISRNNFT 348
LR L + +
Sbjct: 514 SLRYLWVQGYRAS 526
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225
++ T L L N L +L+ L+ L LS+N + F L L+ L + N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 226 LTGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGD-LDSLVDLDLSMN 272
L S+P G+ L++L+ L + N L S+P + D L SL + L N
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNS 201
+ L+L S + + LT LT L LS N + ++P + +L+ L++L L N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87
Query: 202 LTGNIPTS-FGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNN 248
L ++P F L L L + +N L S+P G L+ LQ + + N
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTE--AYLLELDFFSK-VSHAR 590
D + + +G G +++ + G + +K++ K E L++LD K
Sbjct: 26 DLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPY 85
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTN---TEDDLQSLDWITRLKIAIGAA 647
+V G + F+ + M G + L ++ E L K+ +
Sbjct: 86 IVQCFG-TFITNTDVFIAMELM--GTCAEKLKKRMQGPIPERILG--------KMTVAIV 134
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
+ L YL + +HRDV+ S+ILLD++ +++L
Sbjct: 135 KALYYLKEK--HGVIHRDVKPSNILLDERGQIKL 166
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT-EAYLLELDFFSKVSHARLVPLLGHC 598
++ G G ++ G L + + IK I + + + E+ + H +V LG
Sbjct: 29 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-- 86
Query: 599 MERENEKFLVY-KYMPNGDLSSSLYRK----TNTEDDLQSLDWITR--LKIAIGAAEGLS 651
EN ++ + +P G LS+ L K + E + T+ L EGL
Sbjct: 87 SFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGF---YTKQIL-------EGLK 136
Query: 652 YLHHECTLPFVHRDVQASSILLDDK 676
YLH VHRD++ ++L++
Sbjct: 137 YLHDNQI---VHRDIKGDNVLINTY 158
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 36/164 (21%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDL--QSVKTEAYLLE----------LD 581
G F K+ G + VIKR+ + + E L
Sbjct: 22 GGFGQVFKAKHRIDGKTY----------VIKRVKYNNEKAEREVKALAKLDHVNIVHYNG 71
Query: 582 FFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTN---TEDDLQSLDWIT 638
+ + + F+ ++ G L + ++ + +L+
Sbjct: 72 CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV--LALELFE 129
Query: 639 RLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
++ +G+ Y+H + + +RD++ S+I L D +V++G
Sbjct: 130 QI------TKGVDYIHSKKLI---NRDLKPSNIFLVDTKQVKIG 164
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 26/129 (20%)
Query: 571 VKT----------EAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMPNGDLSS 619
VK EA + EL S + H +V LLG C ++ +Y GDL +
Sbjct: 81 VKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG-PVLVITEYCCYGDLLN 139
Query: 620 SLYRK-------TNTEDDLQSLDWITRLKIAIGAAEGLSYL--HHECTLPFVHRDVQASS 670
L RK + L + A+G+++L + +HRDV A +
Sbjct: 140 FLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN-----CIHRDVAARN 194
Query: 671 ILLDDKFEV 679
+LL +
Sbjct: 195 VLLTNGHVA 203
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLEL-DFFSKVS-------HARLVPLLG 596
+ + + + + V +K +K +A +L D S++ H ++ LLG
Sbjct: 54 AEAVGIDKDKPKEAVTVAVK-----MLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLG 108
Query: 597 HCMERENEKFLVYKYMPNGDLSSSL---------YRKTNTEDDLQSLDWITRLKIAIGAA 647
C + +++ +Y G+L L Y + + + + A
Sbjct: 109 ACTQDG-PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 167
Query: 648 EGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
G+ YL +HRD+ A ++L+ + +++
Sbjct: 168 RGMEYLASQK-----CIHRDLAARNVLVTENNVMKIA 199
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 29/169 (17%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTE----AYLLELDFFSKVS 587
FSD I +G G ++ + V IK++ ++ + E+ F K+
Sbjct: 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112
Query: 588 HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI--- 644
H + G C RE+ +LV +Y +S L + ++IA
Sbjct: 113 HPNTIQYRG-CYLREHTAWLVMEYCLGS--ASDLLEVHKKP--------LQEVEIAAVTH 161
Query: 645 GAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQ 690
GA +GL+YLH +HRDV+A +ILL + V+L G +
Sbjct: 162 GALQGLAYLHSHNM---IHRDVKAGNILLSEPGLVKLGDFG----SASI 203
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 62/438 (14%), Positives = 128/438 (29%), Gaps = 162/438 (36%)
Query: 3 WSMLLLDDCECVKAMVDQRSVVMFFVMFLLLFEPTFEQQLERLSS-RTELAALFELRSSL 61
W L L +C + +++ L +P + + + S+ + + ++ L
Sbjct: 186 W--LNLKNCNSPETVLEM------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 62 GLRRRDWPRKVDPCL-----VWN-------GVRCQ------NGSVVGINISGFRRTRLGS 103
L+ + + CL V N + C+ V +S T +
Sbjct: 238 -LKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISL 291
Query: 104 QNPR--FAADALVNLTHLASFNASRFLLPGSIPDWLG---QQLPTLQALDLRSCSIS--- 155
+ D + +L L +L Q LP + + +
Sbjct: 292 DHHSMTLTPDEVKSL--LLK--------------YLDCRPQDLP-REV-----LTTNPRR 329
Query: 156 -GVIPFSLGNLTNL--TSLYLSDNGLTGTIPSSLGQLS---------------------- 190
+I S+ + +++ + LT I SSL L
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 191 -VLSVL--------------DLSRNSL--------TGNIP-------------------- 207
+LS++ L + SL T +IP
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 208 -TSFGLLKNLSSLDIS----SNY--------LTGSIPPGLGTLSKLQYLN-------VSN 247
+ + K S D+ Y L P TL ++ +L+ + +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 248 NSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFV--IGNNFLSGNLSVN 305
+S A + + L++L L + + P R + ++ F+ I N +
Sbjct: 510 DSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS----- 562
Query: 306 LFPTVSQLQIIVLRQNGF 323
L+I ++ ++
Sbjct: 563 --KYTDLLRIALMAEDEA 578
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 28/157 (17%)
Query: 548 GDLFRGILEGGIPVVIKRIDLQSVKT----------EAYLLELDFFSKV-SHARLVPLLG 596
G + G K +VK + E++ + H ++ LLG
Sbjct: 95 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLG 154
Query: 597 HCMERENEKFLVYKYMPNGDLSSSL---------YRKTNTEDDLQSLDWITRLKIAIGAA 647
C + +++ +Y G+L L Y + + + + A
Sbjct: 155 ACTQDG-PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLA 213
Query: 648 EGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
G+ YL +HRD+ A ++L+ + +++
Sbjct: 214 RGMEYLASQK-----CIHRDLAARNVLVTENNVMKIA 245
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 33/162 (20%)
Query: 548 GDLFRGIL------EGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
G + + G V +K + + + L E + +V+H ++ L G C
Sbjct: 37 GKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS 96
Query: 600 ERENEKFLVYKYMPNGDLSSSL-----------------YRKTNTEDDLQSLDWITRLKI 642
+ L+ +Y G L L + D ++L +
Sbjct: 97 QDG-PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISF 155
Query: 643 AIGAAEGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
A ++G+ YL VHRD+ A +IL+ + ++++
Sbjct: 156 AWQISQGMQYLAEMK-----LVHRDLAARNILVAEGRKMKIS 192
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 28/157 (17%)
Query: 548 GDLFRGILEGGIPVVIKRIDLQSVKT----------EAYLLELDFFSKV-SHARLVPLLG 596
G + G R+ +VK + E++ + H ++ LLG
Sbjct: 83 GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLG 142
Query: 597 HCMERENEKFLVYKYMPNGDLSSSL---------YRKTNTEDDLQSLDWITRLKIAIGAA 647
C + +++ +Y G+L L Y + + + L + A A
Sbjct: 143 ACTQDG-PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVA 201
Query: 648 EGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
G+ YL +HRD+ A ++L+ + +++
Sbjct: 202 RGMEYLASKK-----CIHRDLAARNVLVTEDNVMKIA 233
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 38/159 (23%)
Query: 548 GDLFRGILEG------GIPVVIKRIDLQSVKTEAYLLEL-DFFSKVS-------HARLVP 593
G + G + V +K +K A+L E S++ H +V
Sbjct: 37 GKVVEATAYGLIKSDAAMTVAVK-----MLKPSAHLTEREALMSELKVLSYLGNHMNIVN 91
Query: 594 LLGHCMERENEKFLVYKYMPNGDL-----------SSSLYRKTNTEDDLQSLDWITRLKI 642
LLG C ++ +Y GDL S EDD +LD L
Sbjct: 92 LLGACTIGG-PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSF 150
Query: 643 AIGAAEGLSYL--HHECTLPFVHRDVQASSILLDDKFEV 679
+ A+G+++L + +HRD+ A +ILL
Sbjct: 151 SYQVAKGMAFLASKN-----CIHRDLAARNILLTHGRIT 184
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 11/151 (7%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTE--AYLLELDFFSKVS-HAR 590
D + G G + + + G + +KRI E L++LD +
Sbjct: 8 DLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPF 67
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
V G + RE + ++ + M Y++ + D + KIA+ + L
Sbjct: 68 TVTFYG-ALFREGDVWICMELMDTS--LDKFYKQVIDKGQTIPEDILG--KIAVSIVKAL 122
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
+LH + L +HRDV+ S++L++ +V++
Sbjct: 123 EHLHSK--LSVIHRDVKPSNVLINALGQVKM 151
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 52/253 (20%), Positives = 85/253 (33%), Gaps = 45/253 (17%)
Query: 75 CLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIP 134
N G ++ + FR R P + + H+ + S ++ S
Sbjct: 54 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVIEVSTL 110
Query: 135 DWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLS------DNGLTGTIPSSLGQ 188
+ Q LQ L L +S I +L +NL L LS + L T+ SS +
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSR 169
Query: 189 LSVLSV------------------------LDLSRNSLTGNIPTSFGL------LKNLSS 218
L L++ L+LS N+ L NL
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG--YRKNL-QKSDLSTLVRRCPNLVH 226
Query: 219 LDISS-NYLTGSIPPGLGTLSKLQYLNVSN-NSLASSIPAQLGDLDSLVDLDLSMNSLSG 276
LD+S L L+ LQ+L++S + +LG++ +L L + G
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 286
Query: 277 SVPSELRGLRSLQ 289
++ L LQ
Sbjct: 287 TLQLLKEALPHLQ 299
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 45/265 (16%), Positives = 80/265 (30%), Gaps = 22/265 (8%)
Query: 91 INISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLR 150
+ L D L P +Q +DL
Sbjct: 42 LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 101
Query: 151 SCSIS-GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTS 209
+ I + L + L +L L L+ I ++L + S L L+LS S +
Sbjct: 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GF-SE 157
Query: 210 FGL------LKNLSSLDISSNYLTGSIPPGLGTL-----SKLQYLNVSNNSLA---SSIP 255
F L L L++S + + + LN+S S +
Sbjct: 158 FALQTLLSSCSRLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215
Query: 256 AQLGDLDSLVDLDLSM-NSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQ 314
+ +LV LDLS L E L LQ + + ++ + L+
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275
Query: 315 IIVLRQNGFTGPPPDVLWSMPQLRL 339
+ + G + ++P L++
Sbjct: 276 TLQVFGIVPDGTLQLLKEALPHLQI 300
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTE--AYLLELDFFSKVS-HAR 590
D D I G G + + + G + +KRI + E L++LD + S
Sbjct: 23 DLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPY 82
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
+V G + RE + ++ + M + + DD+ + + KI + + L
Sbjct: 83 IVQFYG-ALFREGDCWICMELM-STSFDKFYKYVYSVLDDVIPEEILG--KITLATVKAL 138
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
++L L +HRD++ S+ILLD ++L
Sbjct: 139 NHLKEN--LKIIHRDIKPSNILLDRSGNIKL 167
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 31/163 (19%)
Query: 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLL-ELDFFSKVS-HA 589
A G F+ ++ SG +KR+ + ++ E+ F K+S H
Sbjct: 37 AEGGFAFVYEAQDVGSGRE----------YALKRLLSNEEEKNRAIIQEVCFMKKLSGHP 86
Query: 590 RLVPLLGHC------MERENEKFLVYKYMPNGDLSSSLYRKTN----TEDDLQSLDWITR 639
+V + +FL+ + G L L + + + D +
Sbjct: 87 NIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTV-------- 138
Query: 640 LKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
LKI + ++H P +HRD++ ++LL ++ ++L
Sbjct: 139 LKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLC 180
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 49/170 (28%)
Query: 548 GDLFRGILEGGIP------VVIK----------RIDLQSVKTEAYLLELDFFSKVSHARL 591
G +F+ G +P V +K + D Q EA L+ ++ + +
Sbjct: 61 GRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR---EAALM-----AEFDNPNI 112
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSL-----------------YRKTNTEDDLQSL 634
V LLG C + L+++YM GDL+ L R + L
Sbjct: 113 VKLLGVCAVGKP-MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPL 171
Query: 635 DWITRLKIAIGAAEGLSYL--HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+L IA A G++YL FVHRD+ + L+ + V++
Sbjct: 172 SCAEQLCIARQVAAGMAYLSERK-----FVHRDLATRNCLVGENMVVKIA 216
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 34/164 (20%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDL--QSVKTEAYLLELDFFSKVSHARL 591
G F KN + IKRI L + + E + E+ +K+ H +
Sbjct: 16 GGFGVVFEAKNKVDDCNY----------AIKRIRLPNRELAREKVMREVKALAKLEHPGI 65
Query: 592 VPLLGHCMERENEK-----------FLVYKYMPNGDLSSSL-YRKTNTE-DDLQSLDWIT 638
V +E+ + ++ + +L + R T E + L
Sbjct: 66 VRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFL 125
Query: 639 RLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
++ AE + +LH + + HRD++ S+I V++G
Sbjct: 126 QI------AEAVEFLHSKGLM---HRDLKPSNIFFTMDDVVKVG 160
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
+ T + + L ++P+ G + L L+ N +T P F L NL L +SN L
Sbjct: 13 DQTLVNCQNIRLA-SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
Query: 227 TGSIPPGL-GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDL 267
T +IP G+ L++L L++++N L SIP G D+L L
Sbjct: 70 T-AIPTGVFDKLTQLTQLDLNDNHL-KSIPR--GAFDNLKSL 107
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 28/289 (9%)
Query: 56 ELRSSLGLRRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTR--------LGSQNPR 107
E + + ++ R V + + G G
Sbjct: 41 ERWCRRKVFIGNCYAVSPATVIR---RFPK--VRSVELKGKPHFADFNLVPDGWGGYVYP 95
Query: 108 FAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS-ISGV-IPFSLGNL 165
+ + T L R ++ + + + + L L SC S +
Sbjct: 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSV----LSVLDLS--RNSLTGN-IPTSFGLLKNLSS 218
NL L L ++ + L L L++S + ++ + + NL S
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 219 LDISSNYLTGSIPPGLGTLSKLQYLNVS------NNSLASSIPAQLGDLDSLVDLDLSMN 272
L ++ + L +L+ L + S + L L L +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275
Query: 273 SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQN 321
++ +P+ L + + V L +LQ + +
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 25/236 (10%)
Query: 137 LGQQLPTLQALDLRSCSISGVIPFSLG----NLTNLTSLYLSD--NGLTGTIPSSLGQLS 190
+ L+ LDLR + V L T+L SL +S + ++ + L
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210
Query: 191 V-LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY------LTGSIPPGLGTLSKLQYL 243
L L L+R + T L L + + L +L+ L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270
Query: 244 NVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG-SVPSELRGLRSLQKFVIGNNFLSGNL 302
+ +++ + +PA L L+LS ++ + L LQ+ + + L
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330
Query: 303 SVNLFPTVSQLQIIVLRQNGFTGPPPD----------VLWSMPQLRLLDISRNNFT 348
V L T L+ + + + P+ V P+L + T
Sbjct: 331 EV-LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Query: 577 LLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDW 636
+ D +++ + + +L + + +SL
Sbjct: 146 IFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVH 205
Query: 637 ITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
RL++ + L+ LHH VH ++ I+LD + V L
Sbjct: 206 HARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLT 248
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 576 YLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLD 635
++ D +++ + + +L + + +SL
Sbjct: 150 FIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLV 209
Query: 636 WITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
RL++ + L+ LHH VH ++ I+LD + V L
Sbjct: 210 HHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLT 253
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 21/111 (18%)
Query: 195 LDLSRNSLT---GNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSL 250
+D S SL IPT L + N +T + PG+ L++L L++ NN L
Sbjct: 14 VDCSGKSLASVPTGIPT------TTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQL 66
Query: 251 ASSIPAQLGD-LDSLVDLDLSMNSLSGSVPSELRG----LRSLQKFVIGNN 296
+ +PA + D L L L L+ N L S+P RG L+SL + NN
Sbjct: 67 -TVLPAGVFDKLTQLTQLSLNDNQLK-SIP---RGAFDNLKSLTHIWLLNN 112
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDISSN 224
T LYL DN +T P +L+ L+ LDL N LT +P F L L+ L ++ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88
Query: 225 YLTGSIPPG-LGTLSKLQYLNVSNN 248
L SIP G L L ++ + NN
Sbjct: 89 QLK-SIPRGAFDNLKSLTHIWLLNN 112
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 35/138 (25%)
Query: 571 VKT----------EAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMPNGDLSS 619
VK EA + EL +++ SH +V LLG C +L+++Y GDL +
Sbjct: 80 VKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG-PIYLIFEYCCYGDLLN 138
Query: 620 SL-------------YRKTNTEDDLQSLDWITR---LKIAIGAAEGLSYL--HHECTLPF 661
L Y ++ + L+ +T L A A+G+ +L
Sbjct: 139 YLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS-----C 193
Query: 662 VHRDVQASSILLDDKFEV 679
VHRD+ A ++L+ V
Sbjct: 194 VHRDLAARNVLVTHGKVV 211
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 18/182 (9%)
Query: 545 GHSGDLFRGILEG------GIPVVIKRI--DLQSVKTEAYLLELDFFSKV-SHARLVPLL 595
G G + G V +K + + A + EL + H +V LL
Sbjct: 33 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 92
Query: 596 GHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH 655
G C + ++ ++ G+LS+ L K N ++ R +G Y+
Sbjct: 93 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFR--------QGKDYVGA 144
Query: 656 ECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLR-LPQSSEQGSS 714
D SS V SLS+V + + L L S Q +
Sbjct: 145 IPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAK 204
Query: 715 GM 716
GM
Sbjct: 205 GM 206
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 15/175 (8%)
Query: 506 SSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKR 565
LP F + LL G F+ G D V+K
Sbjct: 49 CKLPAIKPKTEFQLGSKLVYVHHLLG-EGAFAQVYEATQGDLNDAKNKQK-----FVLKV 102
Query: 566 IDLQSVKTEAYLL--ELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYR 623
+ E Y+ ++ + +N LV + G L +++
Sbjct: 103 QK-PANPWEFYIGTQLMERLKPSMQHMFMKFYS-AHLFQNGSVLVGELYSYGTLLNAINL 160
Query: 624 KTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678
NT + + + + A+ + +H +H D++ + +L + F
Sbjct: 161 YKNTPE--KVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFL 210
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 21/138 (15%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSH--ARLVPLLGHCM 599
G S +F+ + E IK ++L+ ++Y E+ + +K+ +++ L + +
Sbjct: 67 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI 126
Query: 600 ERENEKFLVYKYM--PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
+ +Y M N DL+S L +K +S+D R E + +H
Sbjct: 127 TDQY----IYMVMECGNIDLNSWLKKK-------KSIDPWERKSYWKNMLEAVHTIHQHG 175
Query: 658 TLPFVHRDVQASSILLDD 675
VH D++ ++ L+ D
Sbjct: 176 I---VHSDLKPANFLIVD 190
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 3/115 (2%)
Query: 568 LQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNT 627
++ LL D + S L + +L+ + DL
Sbjct: 125 EEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFV 184
Query: 628 EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ + + L + VH ++ + + LG
Sbjct: 185 YVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLG 236
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 22/170 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDL--------QSVKTEAYLLELDFFSK 585
+F + I +G G +F+ + G IKR Q+ E Y
Sbjct: 12 EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHA----VL 67
Query: 586 VSHARLVPLLGHCMERENEKFLVY-KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI 644
H+ +V E++ L+ +Y G L+ ++ + +
Sbjct: 68 GQHSHVVRYFSA--WAEDDHMLIQNEYCNGGSLADAISENYRIM---SYFKEAELKDLLL 122
Query: 645 GAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694
GL Y+H VH D++ S+I + S
Sbjct: 123 QVGRGLRYIHSMSL---VHMDIKPSNIFISRTSIPNAASEEGDEDDWASN 169
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSH--ARLVPLLGHCM 599
G S +F+ + E IK ++L+ ++Y E+ + +K+ +++ L +
Sbjct: 20 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY-E 78
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTL 659
+ ++V + N DL+S L +K +S+D R E + +H
Sbjct: 79 ITDQYIYMVMEC-GNIDLNSWLKKK-------KSIDPWERKSYWKNMLEAVHTIHQHGI- 129
Query: 660 PFVHRDVQASSILLDD 675
VH D++ ++ L+ D
Sbjct: 130 --VHSDLKPANFLIVD 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 100.0 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 100.0 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 100.0 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 100.0 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 100.0 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 100.0 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 100.0 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 100.0 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 100.0 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 100.0 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 100.0 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 100.0 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 100.0 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 100.0 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 100.0 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 100.0 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 100.0 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 100.0 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 100.0 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 100.0 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 100.0 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 100.0 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 100.0 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 100.0 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 100.0 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 100.0 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 100.0 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 100.0 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 100.0 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 100.0 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 100.0 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 100.0 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 100.0 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 100.0 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 100.0 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 100.0 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 100.0 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 100.0 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 100.0 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 100.0 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 100.0 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 100.0 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 100.0 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 100.0 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 100.0 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 100.0 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 100.0 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 100.0 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 100.0 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 100.0 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 100.0 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 100.0 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 100.0 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 100.0 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 100.0 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 100.0 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 100.0 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 100.0 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 100.0 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 100.0 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 100.0 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 100.0 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 100.0 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 100.0 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 100.0 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 100.0 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 100.0 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 100.0 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 100.0 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 100.0 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 100.0 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 100.0 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 100.0 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 100.0 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 100.0 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 100.0 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 100.0 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 100.0 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 100.0 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 100.0 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 100.0 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 100.0 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 100.0 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 100.0 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 100.0 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 100.0 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 100.0 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 100.0 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 100.0 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 100.0 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 100.0 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 100.0 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 100.0 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 100.0 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 100.0 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 100.0 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 100.0 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 100.0 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 100.0 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 100.0 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 100.0 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 100.0 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 100.0 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 100.0 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 100.0 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 100.0 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 100.0 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 100.0 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 100.0 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 100.0 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 100.0 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 100.0 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 100.0 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 100.0 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 100.0 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 100.0 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 100.0 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 100.0 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 100.0 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 100.0 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 100.0 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 100.0 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 100.0 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 100.0 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 100.0 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 100.0 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 100.0 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 100.0 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 100.0 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 100.0 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 100.0 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 100.0 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 100.0 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 100.0 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 100.0 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 100.0 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 100.0 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 100.0 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 100.0 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 100.0 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 100.0 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 100.0 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 100.0 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 100.0 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 100.0 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 100.0 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 100.0 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 100.0 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 100.0 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 100.0 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 100.0 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 100.0 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 100.0 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 100.0 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 100.0 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 100.0 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 100.0 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 100.0 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 100.0 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 100.0 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 100.0 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 100.0 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 100.0 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 100.0 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 100.0 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 100.0 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 100.0 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 100.0 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 100.0 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 100.0 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 100.0 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 100.0 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 100.0 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 100.0 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 100.0 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 100.0 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 100.0 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 100.0 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 100.0 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 100.0 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 100.0 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 100.0 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 100.0 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 100.0 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 100.0 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 100.0 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 100.0 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 100.0 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 100.0 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 100.0 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 100.0 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 100.0 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 100.0 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 100.0 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 100.0 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 100.0 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 100.0 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 100.0 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 100.0 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 100.0 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 100.0 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 100.0 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 100.0 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 100.0 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 100.0 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 100.0 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 100.0 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 100.0 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 100.0 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 100.0 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 100.0 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 100.0 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 100.0 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 100.0 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 100.0 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 100.0 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 100.0 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 100.0 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.98 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.98 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.98 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.98 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.98 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.98 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.98 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.97 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.97 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.97 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.96 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.96 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.96 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 99.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.89 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.88 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.87 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.84 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.84 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.82 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.81 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 99.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.8 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.79 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.77 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.76 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.75 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.75 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.69 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.68 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 99.66 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.64 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.64 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.57 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.57 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.55 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.52 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.49 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.41 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.28 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.27 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.2 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.2 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 99.16 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 99.03 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.94 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.84 | |
| 3sg8_A | 304 | APH(2'')-ID; antibiotic resistance enzyme, transfe | 98.83 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.79 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.73 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.73 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.68 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 98.59 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.58 | |
| 3tdw_A | 306 | Gentamicin resistance protein; kinase, phosphoryl | 98.49 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 98.46 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.38 | |
| 4gkh_A | 272 | Aminoglycoside 3'-phosphotransferase APHA1-IAB; py | 98.3 | |
| 3ovc_A | 362 | Hygromycin-B 4-O-kinase; aminoglycoside phosphotra | 98.29 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.25 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.24 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.23 | |
| 3ats_A | 357 | Putative uncharacterized protein; hypothetical pro | 98.13 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.07 | |
| 2q83_A | 346 | YTAA protein; 2635576, structural genomics, joint | 98.04 | |
| 2olc_A | 397 | MTR kinase, methylthioribose kinase; kinase ADP-2H | 97.9 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 97.71 | |
| 1zyl_A | 328 | Hypothetical protein YIHE; putative protein kinase | 97.46 | |
| 3jr1_A | 312 | Putative fructosamine-3-kinase; YP_719053.1, struc | 97.42 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.38 | |
| 2ppq_A | 322 | HSK, HK, homoserine kinase; structural genomics, M | 97.3 | |
| 2pyw_A | 420 | Uncharacterized protein; 5-methylthioribose kinase | 97.25 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.2 | |
| 3dxq_A | 301 | Choline/ethanolamine kinase family protein; NP_106 | 97.11 | |
| 3feg_A | 379 | Choline/ethanolamine kinase; non-protein kinase, c | 96.78 | |
| 3csv_A | 333 | Aminoglycoside phosphotransferase; YP_614837.1, ph | 96.7 | |
| 2qg7_A | 458 | Ethanolamine kinase PV091845; malaria, SGC, struct | 96.49 | |
| 3c5i_A | 369 | Choline kinase; choline, kinase, malaria, transfer | 96.49 | |
| 1nw1_A | 429 | Choline kinase (49.2 KD); phospholipid synthesis, | 96.42 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.34 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.19 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.15 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.12 | |
| 3i1a_A | 339 | Spectinomycin phosphotransferase; protein kinase, | 96.06 | |
| 3f2s_A | 401 | CK, chetk-alpha, choline kinase alpha; non-protein | 94.63 | |
| 3mes_A | 424 | Choline kinase; malaria, structural genomics, stru | 93.52 | |
| 2yle_A | 229 | Protein spire homolog 1; actin-binding protein, ac | 89.43 | |
| 3cxl_A | 463 | N-chimerin; SH2, RHO-GAP, structural genomics cons | 86.55 | |
| 3g15_A | 401 | CK, chetk-alpha, choline kinase alpha; non-protein | 84.91 |
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=406.47 Aligned_cols=197 Identities=18% Similarity=0.307 Sum_probs=166.8
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...++||+|+||+||+|++.+ .||||+++..... .++|.+|+++|++++|||||+++|+|.+ +..|+|||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~--~~~~iVmE 111 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK--DNLAIVTQ 111 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS--SSCEEEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC--CeEEEEEE
Confidence 467778999999999999998653 5999998754332 4679999999999999999999998753 56899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||++|+|.++|+.... .++|.++..|+.|||+||+|||++ +||||||||+||||++++++||+|||+|+..
T Consensus 112 y~~gGsL~~~l~~~~~------~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 112 WCEGSSLYKHLHVQET------KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp CCSSCBHHHHHHTSCC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred cCCCCCHHHHHhhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceec
Confidence 9999999999976432 499999999999999999999997 9999999999999999999999999999865
Q ss_pred CC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .....+||+.|||||.+.....+. ++.|+|||||||++|||+||+.||...
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~------y~~ksDVwS~Gvvl~Elltg~~Pf~~~ 240 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNP------FSFQSDVYSYGIVLYELMTGELPYSHI 240 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCC------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred ccCCcceeecccccCCCccCHHHhhccCCCC------CCcHHHhHhHHHHHHHHHHCCCCCCCC
Confidence 32 233457999999999876543332 689999999999999999999999643
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-48 Score=412.54 Aligned_cols=198 Identities=19% Similarity=0.227 Sum_probs=168.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .++|.+|+++|++++|||||++++++.+ ++..|+||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-~~~~yiVm 102 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-NGSLYIVM 102 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-CCEEEEEE
Confidence 6799999999999999999994 67999999999765433 5679999999999999999999998765 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||+||+|.++|..++. ..+++.+...|+.||+.||+|||++ +||||||||+||||++++.+||+|||+|+.
T Consensus 103 Ey~~gg~L~~~i~~~~~-----~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~ 174 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKG-----VLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARV 174 (350)
T ss_dssp ECCTTCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESC
T ss_pred eCCCCCcHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEccccccee
Confidence 99999999999976543 3478999999999999999999998 999999999999999999999999999987
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ....+||+.|||||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 175 ~~~~~~~~~~~~GT~~YmAPE~l~~~~---------y~~~~DiwSlGvilyemltG~~PF~~~ 228 (350)
T 4b9d_A 175 LNSTVELARACIGTPYYLSPEICENKP---------YNNKSDIWALGCVLYELCTLKHAFEAG 228 (350)
T ss_dssp CCHHHHHHHHHHSCCTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ecCCcccccccCCCccccCHHHHCCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 6432 23467999999999887654 478999999999999999999999643
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=409.70 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=173.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+.|+..+.||+|+||+||+|+. .+|+.||||+++..... .+.+.+|+++|++++|||||++++++.+ ++.+|+||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-~~~~~ivmEy 152 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-GDELWVVMEF 152 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEECC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEEEeC
Confidence 4588899999999999999995 57999999999765443 5678999999999999999999998766 6789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|++|+|.+++.+. .+++.++..|+.||+.||+|||++ +||||||||+|||++.++++||+|||+|+...
T Consensus 153 ~~gg~L~~~l~~~--------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 221 (346)
T 4fih_A 153 LEGGALTDIVTHT--------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 221 (346)
T ss_dssp CTTEEHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred CCCCcHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecC
Confidence 9999999999653 389999999999999999999998 99999999999999999999999999998763
Q ss_pred C---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 G---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. ...+.+||+.|||||.+.... |+.++||||+||++|||+||+.||...
T Consensus 222 ~~~~~~~~~~GTp~YmAPEvl~~~~---------y~~~~DiWSlGvilyeml~G~~PF~~~ 273 (346)
T 4fih_A 222 KEVPRRKSLVGTPYWMAPELISRLP---------YGPEVDIWSLGIMVIEMVDGEPPYFNE 273 (346)
T ss_dssp SSSCCBCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CCCCcccccccCcCcCCHHHHCCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 2 345678999999999886554 478999999999999999999999643
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=404.03 Aligned_cols=196 Identities=17% Similarity=0.213 Sum_probs=173.5
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||+||+|+ ..+|+.||||++++.. ...+.+.+|+++|++++|||||++++++.+ ++..|+|
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-DEKLYFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-CCEEEEE
Confidence 469999999999999999999 4679999999997543 235689999999999999999999997765 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||+||||.++|.+.+. +++.+...|+.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+
T Consensus 111 mEy~~gG~L~~~i~~~~~-------l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~ 180 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKIGS-------FDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAK 180 (311)
T ss_dssp ECCCTTEEHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EecCCCCCHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCce
Confidence 999999999999986543 99999999999999999999998 99999999999999999999999999998
Q ss_pred hcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ...+.+||+.|||||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 181 ~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~---------y~~~~DiWSlGvilyeml~G~~PF~~~ 237 (311)
T 4aw0_A 181 VLSPESKQARANSFVGTAQYVSPELLTEKS---------ACKSSDLWALGCIIYQLVAGLPPFRAG 237 (311)
T ss_dssp ECCTTTTCCCBCCCCSCGGGCCHHHHHHSC---------BCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecCCCCCcccccCcccCcccCCHHHHcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 7632 234568999999999886544 468999999999999999999999643
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=403.64 Aligned_cols=203 Identities=20% Similarity=0.290 Sum_probs=169.6
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|...+.||+|+||+||+|++. +++.||||+++..... .++|.+|+++|++++|||||+++|+|.+ ++..|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-~~~~~ 91 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-GDPLI 91 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSSEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-CCEEE
Confidence 45777899999999999999853 4789999999754433 5689999999999999999999998876 56899
Q ss_pred EEEeeCCCCChhhhhhccCC------CCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 607 LVYKYMPNGDLSSSLYRKTN------TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
+|||||++|||.++|++.+. .......++|.++..|+.|||+||+|||++ +||||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEE
Confidence 99999999999999976431 011224699999999999999999999997 999999999999999999999
Q ss_pred eccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 681 LGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|+|||+|+..... .....||..|||||.+.... +++|+|||||||++|||+| |+.||...
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~---------~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~ 234 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK---------FTTESDVWSLGVVLWEIFTYGKQPWYQL 234 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCC---------CCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999865322 22346899999999886544 5889999999999999999 89999643
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=395.89 Aligned_cols=195 Identities=17% Similarity=0.220 Sum_probs=166.9
Q ss_pred CccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec---CCcEEEEE
Q 004248 537 SDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER---ENEKFLVY 609 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~---~~~~~lV~ 609 (766)
+..++||+|+||+||+|.. .+++.||||++...... .++|.+|+++|++++|||||+++++|... ++.+|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 4557899999999999995 57899999999765433 56799999999999999999999987542 23589999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~ 688 (766)
|||++|+|.++|.+.+ .+++..+..|+.||+.||+|||++ .++||||||||+||||+. ++.+||+|||+|+
T Consensus 109 Ey~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~ 180 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-------VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp ECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred eCCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence 9999999999998654 389999999999999999999986 234999999999999984 7999999999998
Q ss_pred hcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ...+.+||+.|||||.+.. . ++.++|||||||++|||+||+.||...
T Consensus 181 ~~~~~~~~~~~GTp~YmAPE~~~~-~---------y~~~~DiwSlGvilyelltg~~Pf~~~ 232 (290)
T 3fpq_A 181 LKRASFAKAVIGTPEFMAPEMYEE-K---------YDESVDVYAFGMCMLEMATSEYPYSEC 232 (290)
T ss_dssp GCCTTSBEESCSSCCCCCGGGGGT-C---------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred eCCCCccCCcccCccccCHHHcCC-C---------CCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 7643 3456689999999998742 2 578999999999999999999999543
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-47 Score=404.65 Aligned_cols=203 Identities=20% Similarity=0.265 Sum_probs=165.9
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|...++||+|+||+||+|++. +++.||||+++..... .++|.+|+++|++++|||||+++|+|.+ ++..|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-~~~~~ 119 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-GRPLL 119 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSSEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEE
Confidence 35666789999999999999853 4789999999754433 5789999999999999999999998876 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCC--------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTE--------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~--------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
+|||||++|+|.++|++..... ....+++|.+++.|+.|||+||+|||+. +||||||||+||||+++++
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCc
Confidence 9999999999999998653210 1124699999999999999999999997 9999999999999999999
Q ss_pred EEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 679 VRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+||+|||+|+..... .....||+.|||||.+.... +++++|||||||++|||+| |+.||...
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~---------~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~ 264 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK---------FTTESDVWSFGVVLWEIFTYGKQPWYQL 264 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHTTSCCTTCSS
T ss_pred EEEcccccceeccCCCcceecCcccccccccChhhhcCCC---------CCccccccchHHHHHHHHcCCCCCCCCC
Confidence 999999999865321 23456899999999886554 5789999999999999999 99999643
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=391.38 Aligned_cols=197 Identities=14% Similarity=0.204 Sum_probs=160.5
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..+.||+|+||+||+|+ ..+|+.||||+++.... ..+++.+|+++|++++|||||++++++.+ ++..|+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-~~~~~i 90 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-KDEIIM 90 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-CCEEEE
Confidence 3689999999999999999999 46799999999975432 25679999999999999999999997765 678999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||| +|+|.+++.+++ .+++.+...++.||+.||+|||++ +||||||||+|||+++++++||+|||+|
T Consensus 91 vmEy~-~g~L~~~l~~~~-------~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla 159 (275)
T 3hyh_A 91 VIEYA-GNELFDYIVQRD-------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLS 159 (275)
T ss_dssp EEECC-CEEHHHHHHHSC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC
T ss_pred EEeCC-CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCC
Confidence 99999 689999997654 399999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.... ...+.+||+.|+|||.+.+..+ ++.++||||+||++|||+||+.||...
T Consensus 160 ~~~~~~~~~~~~~GT~~Y~APE~~~~~~y--------~~~~~DiwSlGvily~lltg~~PF~~~ 215 (275)
T 3hyh_A 160 NIMTDGNFLKTSCGSPNYAAPEVISGKLY--------AGPEVDVWSCGVILYVMLCRRLPFDDE 215 (275)
T ss_dssp ---------------CTTSCHHHHSSSSC--------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCCCCccCCeeECcccCChhhhcCCCC--------CCChhhhHHHHHHHHHHHHCCCCCCCC
Confidence 87632 3455789999999999876543 367999999999999999999999643
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-47 Score=401.57 Aligned_cols=201 Identities=19% Similarity=0.245 Sum_probs=169.1
Q ss_pred CCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++..++||+|+||+||+|++ .+++.||||+++..... .++|.+|+++|++++|||||+++|+|.+ ++..++
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~~l 106 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK-DQPLSM 106 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSCEE
T ss_pred CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE-CCEEEE
Confidence 45578899999999999985 24789999999654332 6789999999999999999999998876 567999
Q ss_pred EEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 608 VYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
|||||++|||.++|+.+.... .....++|.++..|+.|||+||+|||++ +||||||||+||||+++++
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCC
Confidence 999999999999997543210 1124599999999999999999999998 9999999999999999999
Q ss_pred EEeccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 679 VRLGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 679 ~kl~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+||+|||+|+.... ......||..|+|||.+..+. ++.|+|||||||++|||+| |+.||...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~---------~s~ksDVwSfGvvl~El~t~g~~Pf~~~ 251 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK---------FSIDSDIWSYGVVLWEVFSYGLQPYCGY 251 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCTTTTC
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCC---------CCccchhhhHHHHHHHHHhCCCCCCCCC
Confidence 99999999986521 233457899999999876544 5889999999999999999 89999543
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=411.56 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=173.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..++||+|+||+||+|+. .+|+.||||+++..... .+.+.+|+++|++++|||||++++++.+ ++.+|+||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-~~~~~iVmEy 229 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLV-GDELWVVMEF 229 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEEEC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEE-CCEEEEEEeC
Confidence 4689999999999999999995 67999999999765443 5679999999999999999999998776 6789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|+||+|.+++... .+++.++..|+.||+.||+|||++ +||||||||+||||+.+|.+||+|||+|+...
T Consensus 230 ~~gG~L~~~i~~~--------~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~ 298 (423)
T 4fie_A 230 LEGGALTDIVTHT--------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 298 (423)
T ss_dssp CTTEEHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECC
T ss_pred CCCCcHHHHHhcc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECC
Confidence 9999999999643 389999999999999999999998 99999999999999999999999999998763
Q ss_pred C---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 G---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....+||+.|||||++.... |+.++||||+||++|||++|+.||...
T Consensus 299 ~~~~~~~~~~GTp~YmAPEvl~~~~---------y~~~~DiWSlGvilyeml~G~~PF~~~ 350 (423)
T 4fie_A 299 KEVPRRKSLVGTPYWMAPELISRLP---------YGPEVDIWSLGIMVIEMVDGEPPYFNE 350 (423)
T ss_dssp SSCCCBCCCEECTTTCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CCCccccccccCcCcCCHHHHCCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 2 345678999999999886554 478999999999999999999999643
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-47 Score=398.51 Aligned_cols=196 Identities=17% Similarity=0.157 Sum_probs=165.9
Q ss_pred CCCCccceeecCCcceEEEEEE----cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||+||+|+. .+++.||||+++.... ...++.+|+++|++++|||||++++++.+ ++..|
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~ 102 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT-EGKLY 102 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-TTEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-CCEEE
Confidence 4689999999999999999984 2478999999975432 24478999999999999999999997765 67899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|||||+||||.++|.+.+. +++.+...|+.||+.||+|||++ +||||||||+|||+++++++||+|||+
T Consensus 103 ivmEy~~gg~L~~~l~~~~~-------l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGl 172 (304)
T 3ubd_A 103 LILDFLRGGDLFTRLSKEVM-------FTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGL 172 (304)
T ss_dssp EEECCCTTCEEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEE
T ss_pred EEEEcCCCCCHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEeccccc
Confidence 99999999999999986543 99999999999999999999998 999999999999999999999999999
Q ss_pred hhhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+... ....+.+||+.|||||.+.... ++.++||||+||++|||+||+.||...
T Consensus 173 a~~~~~~~~~~~~~~GT~~YmAPE~~~~~~---------y~~~~DiwSlGvilyemltG~~PF~~~ 229 (304)
T 3ubd_A 173 SKESIDHEKKAYSFCGTVEYMAPEVVNRRG---------HTQSADWWSFGVLMFEMLTGTLPFQGK 229 (304)
T ss_dssp EEC-----CCCCSCCCCGGGCCHHHHHTSC---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceeccCCCccccccccCcccCCHHHhccCC---------CCCCCcccchHHHHHHHHhCCCCCCCc
Confidence 98652 2345678999999999886554 478999999999999999999999643
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=398.51 Aligned_cols=192 Identities=20% Similarity=0.189 Sum_probs=166.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|...++||+|+||+||+|+. .+|+.||||+++.... +.+|+++|++++|||||++++++.+ ++.+|+|||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnIV~l~~~~~~-~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRIVPLYGAVRE-GPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTBCCEEEEEEE-TTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEEEecc
Confidence 4577788999999999999994 6799999999976543 2469999999999999999998765 57899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccchhhhhcC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEVCAQG 691 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG~a~~~~ 691 (766)
+||+|.++|++.+ .+++.+...|+.||+.||+|||++ +||||||||+||||+.++ ++||+|||+|+...
T Consensus 133 ~gg~L~~~l~~~~-------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~ 202 (336)
T 4g3f_A 133 EGGSLGQLIKQMG-------CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQ 202 (336)
T ss_dssp TTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred CCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEcc
Confidence 9999999998654 399999999999999999999998 999999999999999988 69999999998763
Q ss_pred CC--------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GD--------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~--------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ....+||+.|||||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~---------y~~~~DiwSlGvilyemltG~~Pf~~~ 259 (336)
T 4g3f_A 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKP---------CDAKVDIWSSCCMMLHMLNGCHPWTQY 259 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred CCCcccceecCCccccCccccCHHHHCCCC---------CCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 21 12347999999999987654 478999999999999999999999543
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-46 Score=395.15 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=163.1
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCC---cEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN---EKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~---~~~lV~E 610 (766)
++|...++||+|+||+||+|++ +|+.||||+++........+.+|+..+.+++|||||+++|+|.+.+. ++|+|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence 3566778999999999999987 58899999997654333334556667788999999999999876432 5799999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC-----CCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC-----TLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
||++|+|.++|+++ .++|+++.+++.|+|+||+|||+++ .++||||||||+|||+|+++++||+|||
T Consensus 82 y~~~gsL~~~l~~~--------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG 153 (303)
T 3hmm_A 82 YHEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp CCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred CCCCCcHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCC
Confidence 99999999999753 3899999999999999999999862 4689999999999999999999999999
Q ss_pred hhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 686 EVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 686 ~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+|+..... ....+||+.|||||.+....... ...+++|+|||||||++|||+||+.||.
T Consensus 154 la~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~---~~~~~~k~DVwS~Gvvl~El~tg~~~~~ 219 (303)
T 3hmm_A 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMK---HFESFKRADIYAMGLVFWEIARRCSIGG 219 (303)
T ss_dssp TCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTT---CHHHHHHHHHHHHHHHHHHHHHTBCBTT
T ss_pred CCccccCCCCceeeecccccccccccCHHHhccccccc---CCccChhHhhhhHHHHHHHHHHCCCCCC
Confidence 99865322 12347999999999876432110 0016889999999999999999987763
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=439.14 Aligned_cols=349 Identities=28% Similarity=0.355 Sum_probs=276.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCC--CCCCCCCCCCCCCccceeecCCCEEEEEcCCCCcCCCCC---CCCcc----------
Q 004248 44 RLSSRTELAALFELRSSLGLR--RRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGS---QNPRF---------- 108 (766)
Q Consensus 44 ~~~~~~~~~aLl~~k~~l~~~--~~~W~~~~~~C~~W~gv~C~~~~v~~l~l~~~~~~~~~~---~~~~~---------- 108 (766)
..+.++|++||++||+++.++ .++|+.++| ||.|.||+|++++|++++|++.... |. +++.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~-~C~w~gv~C~~~~v~~L~L~~~~l~--g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNKN-PCTFDGVTCRDDKVTSIDLSSKPLN--VGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSC-GGGSTTEEEETTEEEEEECTTSCCC--EEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCCCCC-CcCCcceEECCCcEEEEECCCCCcC--CccCccChhHhccCcccccC
Confidence 334678999999999999753 589986655 5599999999899999999976432 21 11100
Q ss_pred --------chhhhccCCCCCEEecCCCCCCCCCch--hhhhCCCCCCEEEccCCCCCccCCccc-CCCCCCcEEEeecCc
Q 004248 109 --------AADALVNLTHLASFNASRFLLPGSIPD--WLGQQLPTLQALDLRSCSISGVIPFSL-GNLTNLTSLYLSDNG 177 (766)
Q Consensus 109 --------~~~~l~~l~~L~~L~ls~n~l~g~ip~--~~~~~l~~L~~L~Ls~N~l~g~~p~~l-~~l~~L~~L~Ls~N~ 177 (766)
.+..+.++++|++|++++|.+.|.+|. .++. +++|++|||++|.+++.+|..+ .++++|++|+|++|+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 024678889999999999999998888 7766 9999999999999998888776 889999999999999
Q ss_pred CCCCCCcc---ccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCC
Q 004248 178 LTGTIPSS---LGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI 254 (766)
Q Consensus 178 l~~~~p~~---l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 254 (766)
+++..|.. +.++++|++|++++|.+++.+|. ..+++|++|+|++|.+++.+|. ++++++|++|+|++|++++.+
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 98887776 78888888888888888876654 7888888888888888887777 888888888898888888888
Q ss_pred ccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCC
Q 004248 255 PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSM 334 (766)
Q Consensus 255 p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 334 (766)
|..++++++|++|++++|++++.+|.. .+++|++|++++|.++|.+|..++..+++|+.|+|++|++++.+|..+.++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 888888888888888888888877765 788888888888888888887775556788888888888888888888888
Q ss_pred CCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC---C-CCCEEeccCCcCccccChhh
Q 004248 335 PQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL---G-RFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 335 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l---~-~l~~ldLs~N~l~g~~p~~~ 401 (766)
++|++|++++|+++|.+|...+..+++|++|++++|.+.|.+|..+ . +|+.|||++|+++|.+|..+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 8888888888888877776545566777777777777777666542 2 56666666666666665544
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=394.33 Aligned_cols=215 Identities=17% Similarity=0.217 Sum_probs=177.4
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCC-CCcccc
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSH-ARLVPL 594 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H-~niv~l 594 (766)
++..+++-..++|+..+.||+|+||+||+|+.. .++.||||++...... .++|.+|+++|++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 344455555678999999999999999999853 2468999999765433 5679999999999965 899999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecC
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRD 665 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrD 665 (766)
+|+|.+.++.+|+|||||++|+|.++|+..... ......++|.++..|+.|||+||+|||++ +|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCc
Confidence 999876556789999999999999999764321 01124589999999999999999999998 999999
Q ss_pred CCCCCeeeCCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh
Q 004248 666 VQASSILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 666 lKp~NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
|||+|||+++++.+||+|||+|+..... .....||..|||||.+.... ++.++|||||||++|||+
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~---------y~~ksDVwS~Gv~l~El~ 281 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV---------YTIQSDVWSFGVLLWEIF 281 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHT
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCC---------CCCcccEeehHHHHHHHH
Confidence 9999999999999999999999876322 12356889999999886544 588999999999999999
Q ss_pred c-CCCCCCCCc
Q 004248 741 F-NNHLNLSSR 750 (766)
Q Consensus 741 t-G~~p~~~~~ 750 (766)
| |+.||....
T Consensus 282 t~G~~Pf~~~~ 292 (353)
T 4ase_A 282 SLGASPYPGVK 292 (353)
T ss_dssp TTSCCSSTTCC
T ss_pred hCCCCCCCCCC
Confidence 8 999996443
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=380.76 Aligned_cols=195 Identities=21% Similarity=0.299 Sum_probs=158.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCC-------
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMEREN------- 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~------- 603 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+++.+|+++|++++|||||++++++.+.+.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4688999999999999999994 67999999999754432 5679999999999999999999998765322
Q ss_pred ----cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 604 ----EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 604 ----~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
..|+|||||++|+|.+++.++.. ....++...+.|+.||+.||+|||++ +||||||||+|||++.++.+
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~v 157 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCT----IEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVV 157 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCS----GGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCC----CChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcE
Confidence 36999999999999999976542 12367788899999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcCCC---------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCC
Q 004248 680 RLGSLSEVCAQGGD---------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNH 744 (766)
Q Consensus 680 kl~DFG~a~~~~~~---------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~ 744 (766)
||+|||+|+..... .+..+||+.|||||.+.+.. ++.++|||||||++|||++
T Consensus 158 Kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~---------y~~~~DiwSlGvilyell~--- 225 (299)
T 4g31_A 158 KVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNS---------YSHKVDIFSLGLILFELLY--- 225 (299)
T ss_dssp EECCCCCC--------------------------CCCTTSCHHHHTTCC---------CCTHHHHHHHHHHHHHHHS---
T ss_pred EEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCC---------CCCHHHHHHHHHHHHHHcc---
Confidence 99999999875321 12357999999999886554 4789999999999999997
Q ss_pred CCC
Q 004248 745 LNL 747 (766)
Q Consensus 745 p~~ 747 (766)
||.
T Consensus 226 Pf~ 228 (299)
T 4g31_A 226 PFS 228 (299)
T ss_dssp CCS
T ss_pred CCC
Confidence 774
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=408.62 Aligned_cols=352 Identities=20% Similarity=0.314 Sum_probs=298.0
Q ss_pred HHHHHHHHHHHHhCCCC-----------CCCCCCCCCCCCCc---cceeec-CCCEEEEEcCCCCcCCCCCCCCccchhh
Q 004248 48 RTELAALFELRSSLGLR-----------RRDWPRKVDPCLVW---NGVRCQ-NGSVVGINISGFRRTRLGSQNPRFAADA 112 (766)
Q Consensus 48 ~~~~~aLl~~k~~l~~~-----------~~~W~~~~~~C~~W---~gv~C~-~~~v~~l~l~~~~~~~~~~~~~~~~~~~ 112 (766)
..|+.||.++++++... ..+|+.+.| ||.| .||+|+ .|+|++|+|++.+. .|.++ .+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~-~c~w~~~~GV~C~~~~~V~~L~L~~~~l--~g~lp-----~~ 100 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKE-LDMWGAQPGVSLNSNGRVTGLSLEGFGA--SGRVP-----DA 100 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSC-GGGTTCCTTEEECTTCCEEEEECTTSCC--EEEEC-----GG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCC-cccccCCCCeEEcCCCCEEEEEecCccc--CCcCC-----hH
Confidence 46999999999998532 137987665 4589 999996 58999999998653 24444 37
Q ss_pred hccCCCCCEEecCCCCC---------------------------------------------------------------
Q 004248 113 LVNLTHLASFNASRFLL--------------------------------------------------------------- 129 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l--------------------------------------------------------------- 129 (766)
+++|++|++|++++|.+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 89999999999998843
Q ss_pred ---------------CCCCchhhhhCCCCCCEEEccCCCCCcc-----------------CCcccC--CCCCCcEEEeec
Q 004248 130 ---------------PGSIPDWLGQQLPTLQALDLRSCSISGV-----------------IPFSLG--NLTNLTSLYLSD 175 (766)
Q Consensus 130 ---------------~g~ip~~~~~~l~~L~~L~Ls~N~l~g~-----------------~p~~l~--~l~~L~~L~Ls~ 175 (766)
+| ||+.+++ +++|++|+|++|.++|. +|..++ ++++|++|+|++
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred cchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 35 8888876 99999999999999996 999999 999999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCC-CCC-CCCcccCCC------CCCCEEeccCCcCCCCCCC--CCCCCCCccEEEc
Q 004248 176 NGLTGTIPSSLGQLSVLSVLDLSRNS-LTG-NIPTSFGLL------KNLSSLDISSNYLTGSIPP--GLGTLSKLQYLNV 245 (766)
Q Consensus 176 N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L 245 (766)
|++.+.+|..++++++|++|+|++|+ ++| .+|..++++ ++|+.|+|++|+++ .+|. .++++++|++|++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 99999999999999999999999998 998 899988876 99999999999999 8998 8999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCC-CCEEEccCccCccccCCCccCCC--CcccEEEccCCC
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRS-LQKFVIGNNFLSGNLSVNLFPTV--SQLQIIVLRQNG 322 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~-L~~L~ls~N~l~g~~~~~~~~~l--~~L~~L~L~~N~ 322 (766)
++|+++|.+| .++++++|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+ ... ++|+.|++++|+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~-~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF-DAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCC-CTTCSSCEEEEECCSSC
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhh-hhcccCccCEEECcCCc
Confidence 9999998999 8999999999999999998 88989999999 999999999998 677643 443 489999999999
Q ss_pred CCCCCCcccC-------CCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcC-CC----------CCC
Q 004248 323 FTGPPPDVLW-------SMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV-LG----------RFR 384 (766)
Q Consensus 323 l~~~~p~~l~-------~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~-l~----------~l~ 384 (766)
+++.+|..+. .+++|++|+|++|+++ .+|...+..+++|+.|++++|.+. .+|.. +. +|+
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCC
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCcc
Confidence 9999998888 7889999999999998 677666566788999999999988 66643 21 789
Q ss_pred EEeccCCcCccccChhhh-hccc-----CCCcccCCCCC
Q 004248 385 LVDLSGNYFEGRVPEYVH-SNAS-----SLDSNCLQNVP 417 (766)
Q Consensus 385 ~ldLs~N~l~g~~p~~~~-~~~~-----~l~~n~l~~~~ 417 (766)
.|||++|+++ .+|..+. ..+. ++++|.+.+.|
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 9999999998 6787664 1221 45667776644
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=413.12 Aligned_cols=352 Identities=19% Similarity=0.281 Sum_probs=275.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCCC-----CCC-CCc------------cceeec-CCCEEEEEcCCCCcCCCCCCCC
Q 004248 46 SSRTELAALFELRSSLGLRRRDWPRKV-----DPC-LVW------------NGVRCQ-NGSVVGINISGFRRTRLGSQNP 106 (766)
Q Consensus 46 ~~~~~~~aLl~~k~~l~~~~~~W~~~~-----~~C-~~W------------~gv~C~-~~~v~~l~l~~~~~~~~~~~~~ 106 (766)
+..+|++||++||+++.++ +|+.+. +|| |.| .||+|+ +++|++|+|++.+. .|.++
T Consensus 266 ~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L--~G~ip- 340 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA--KGRVP- 340 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC--EEEEC-
T ss_pred cchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCC--CCcCc-
Confidence 3567999999999999764 897554 552 699 999997 68999999998654 24444
Q ss_pred ccchhhhccCCCCCEEec-CCCCCCCC-----------------------------------------------------
Q 004248 107 RFAADALVNLTHLASFNA-SRFLLPGS----------------------------------------------------- 132 (766)
Q Consensus 107 ~~~~~~l~~l~~L~~L~l-s~n~l~g~----------------------------------------------------- 132 (766)
..+++|++|+.|+| ++|.+.|.
T Consensus 341 ----~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 341 ----DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp ----GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred ----hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 37889999999999 77755444
Q ss_pred -----------------------CchhhhhCCCCCCEEEccCCCCCc-----------------cCCcccC--CCCCCcE
Q 004248 133 -----------------------IPDWLGQQLPTLQALDLRSCSISG-----------------VIPFSLG--NLTNLTS 170 (766)
Q Consensus 133 -----------------------ip~~~~~~l~~L~~L~Ls~N~l~g-----------------~~p~~l~--~l~~L~~ 170 (766)
||+.++. +++|++|+|++|.++| .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 7888876 9999999999999998 4899988 9999999
Q ss_pred EEeecCcCCCCCCccccCCCCCCEEEccCCC-CCC-CCCcccCCCC-------CCCEEeccCCcCCCCCCC--CCCCCCC
Q 004248 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS-LTG-NIPTSFGLLK-------NLSSLDISSNYLTGSIPP--GLGTLSK 239 (766)
Q Consensus 171 L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~l~~l~~ 239 (766)
|+|++|++.+.+|..|+++++|++|+|++|+ ++| .+|..+++++ +|+.|+|++|.++ .+|. .++++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 988 7887666554 9999999999998 8888 8999999
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCC-CCEEEccCccCccccCCCccCCCC--cccEE
Q 004248 240 LQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRS-LQKFVIGNNFLSGNLSVNLFPTVS--QLQII 316 (766)
Q Consensus 240 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~-L~~L~ls~N~l~g~~~~~~~~~l~--~L~~L 316 (766)
|+.|+|++|+++ .+| .++++++|+.|+|++|+++ .+|..+.++++ |+.|++++|.++ .+|.. +..++ +|+.|
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEE
Confidence 999999999998 788 8889999999999999998 88888988988 999999999988 66643 34443 38888
Q ss_pred EccCCCCCCCCCccc---C--CCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC-----------
Q 004248 317 VLRQNGFTGPPPDVL---W--SMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL----------- 380 (766)
Q Consensus 317 ~L~~N~l~~~~p~~l---~--~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l----------- 380 (766)
+|++|++++.+|... . .+++|+.|+|++|+++ .+|...+..+++|+.|+|++|.+. .+|...
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 888888887665432 2 3347777777777777 566555445667777777777776 555321
Q ss_pred CCCCEEeccCCcCccccChhhh-hccc-----CCCcccCCCC
Q 004248 381 GRFRLVDLSGNYFEGRVPEYVH-SNAS-----SLDSNCLQNV 416 (766)
Q Consensus 381 ~~l~~ldLs~N~l~g~~p~~~~-~~~~-----~l~~n~l~~~ 416 (766)
++|+.|+|++|+++ .+|..+. ..+. ++++|.+.+.
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~l 768 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF 768 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCcc
Confidence 16777777777777 5666553 1211 3455665554
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=388.03 Aligned_cols=196 Identities=18% Similarity=0.210 Sum_probs=169.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEe-----cCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCME-----RENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~-----~~~~ 604 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+++.+|+++|++++|||||++++++.. ..+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 5699999999999999999994 67999999999754332 4578999999999999999999997643 2357
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
+|+|||||+ |+|.+++.+.+ .+++.++..|+.||+.||+|||++ +||||||||+|||++.++.+||+||
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~-------~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DF 202 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ-------PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDF 202 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCC
T ss_pred EEEEEeCCC-CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeec
Confidence 899999996 78999997654 499999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcC-------CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQG-------GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~-------~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+|+... ....+.+||++|+|||++.+..+ ++.++||||+||++|||+||+.||..
T Consensus 203 Gla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~--------~~~~~DiWSlG~il~ell~G~~pF~g 265 (398)
T 4b99_A 203 GMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE--------YTQAIDLWSVGCIFGEMLARRQLFPG 265 (398)
T ss_dssp TTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSC--------CCTHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred ceeeecccCccccccccccceeChHhcCHHHhcCCCC--------CCChhheehhHHHHHHHHHCCCCCCC
Confidence 9998652 12345689999999998765443 57899999999999999999999954
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=372.41 Aligned_cols=289 Identities=30% Similarity=0.480 Sum_probs=243.7
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCCCCCCCCCCCC--ccceeecC----CCEEEEEcCCCCcCCCCCCCCccchhhhccC
Q 004248 45 LSSRTELAALFELRSSLGLR--RRDWPRKVDPCLV--WNGVRCQN----GSVVGINISGFRRTRLGSQNPRFAADALVNL 116 (766)
Q Consensus 45 ~~~~~~~~aLl~~k~~l~~~--~~~W~~~~~~C~~--W~gv~C~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l 116 (766)
.|.++|++||++||+++.++ .++|..+.||| . |.||+|+. ++|+.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C-~~~w~gv~C~~~~~~~~l~~L~L----------------------- 57 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCC-NRTWLGVLCDTDTQTYRVNNLDL----------------------- 57 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTT-TTCSTTEEECCSSSCCCEEEEEE-----------------------
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCC-cCCCcceEeCCCCCCceEEEEEC-----------------------
Confidence 48999999999999999753 47898766655 6 99999973 45555554
Q ss_pred CCCCEEecCCCCCCC--CCchhhhhCCCCCCEEEccC-CCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCC
Q 004248 117 THLASFNASRFLLPG--SIPDWLGQQLPTLQALDLRS-CSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g--~ip~~~~~~l~~L~~L~Ls~-N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 193 (766)
++|.+.| .+|+.+.. +++|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|+
T Consensus 58 --------~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 58 --------SGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp --------ECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred --------CCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4566667 78888766 89999999994 888888999999999999999999999888899999999999
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCC-CccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 004248 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLS-KLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 194 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 272 (766)
+|+|++|++++.+|..|..+++|++|+|++|.+++.+|..+++++ +|++|++++|++++.+|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999888999999999999999999999888898888888 899999999999888898888887 999999999
Q ss_pred cCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC
Q 004248 273 SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 273 ~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
++++.+|..+..+++|+.|++++|.+++.++. +..+++|+.|+|++|++++.+|..+..+++|++|+|++|+++|.+|
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 99988888999999999999999999877665 5678889999999999998899999999999999999999998888
Q ss_pred cccccCCCCCcEEEccCCc
Q 004248 353 NSRSNVNTSTVELNISQNM 371 (766)
Q Consensus 353 ~~~~~~~~~l~~L~ls~N~ 371 (766)
.. ..+++++.+++++|.
T Consensus 286 ~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS--TTGGGSCGGGTCSSS
T ss_pred CC--ccccccChHHhcCCC
Confidence 64 334455555555554
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=384.49 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=171.9
Q ss_pred HHhCCCCccceeecCCcceEEEEEE----cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcE
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEK 605 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 605 (766)
+..++|+..++||+|+||+||+|+. .+++.||||++.... ...++.+|+++|+++ +|||||++++++.+ ++..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~-~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-HPIRIAAELQCLTVAGGQDNVMGVKYCFRK-NDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-CHHHHHHHHHHHHHTCSBTTBCCCSEEEEE-TTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-CHHHHHHHHHHHHHhcCCCCCceEEEEEEE-CCEE
Confidence 4567899999999999999999984 247899999986543 355789999999998 69999999997665 6789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEeccc
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLGSL 684 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DF 684 (766)
|+|||||++|+|.+++. .+++.+...|+.|++.||+|||++ +||||||||+|||++.+ +.+||+||
T Consensus 96 ~lvmE~~~g~~L~~~~~----------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DF 162 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILN----------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDF 162 (361)
T ss_dssp EEEEECCCCCCHHHHHT----------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCC
T ss_pred EEEEeCCCcccHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcC
Confidence 99999999999999983 288999999999999999999998 99999999999999977 89999999
Q ss_pred hhhhhcCCC-------------------------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecch
Q 004248 685 SEVCAQGGD-------------------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHG 733 (766)
Q Consensus 685 G~a~~~~~~-------------------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~G 733 (766)
|+|+..... .++.+||++|+|||.+.+... ++.++||||+|
T Consensus 163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~--------y~~~~DiWSlG 234 (361)
T 4f9c_A 163 GLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPN--------QTTAIDMWSAG 234 (361)
T ss_dssp TTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSC--------CCTHHHHHHHH
T ss_pred CCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCC--------CCCccchhhhH
Confidence 999754211 223579999999998765432 57899999999
Q ss_pred HHHHHHhcCCCCCCCCcccccccee
Q 004248 734 NPLFSAIFNNHLNLSSRFGVKQQTT 758 (766)
Q Consensus 734 vvl~elltG~~p~~~~~~~~~~~~~ 758 (766)
|++|||+||+.||+.++...+++..
T Consensus 235 ~il~ell~G~~Pf~~~~~~~~~l~~ 259 (361)
T 4f9c_A 235 VIFLSLLSGRYPFYKASDDLTALAQ 259 (361)
T ss_dssp HHHHHHHHTCSSSSCCSSHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHH
Confidence 9999999999999766655444433
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=398.60 Aligned_cols=197 Identities=21% Similarity=0.220 Sum_probs=169.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHH---HHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYL---LELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~---~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..++||+|+||+||+|+. .+|+.||||++++... ....+. +|+++++.++|||||++++++.+ ++.+
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~-~~~l 267 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKL 267 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-SSEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE-CCEE
Confidence 5799999999999999999994 6799999999975432 123333 44677788899999999997655 6789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+|||||+||+|.++|.+.+. +++.....|+.||+.||+|||++ +||||||||+|||||.+|++||+|||
T Consensus 268 ylVmEy~~GGdL~~~l~~~~~-------l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFG 337 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHGV-------FSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLG 337 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEecCCCCcHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccc
Confidence 999999999999999986543 99999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcC-CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQG-GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~-~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|+... ....+.+||+.|+|||++..+.. |+.++||||+||++|||+||+.||...
T Consensus 338 lA~~~~~~~~~t~~GTp~YmAPEvl~~~~~--------y~~~vDiWSLGvilYEmLtG~~PF~~~ 394 (689)
T 3v5w_A 338 LACDFSKKKPHASVGTHGYMAPEVLQKGVA--------YDSSADWFSLGCMLFKLLRGHSPFRQH 394 (689)
T ss_dssp TCEECSSCCCCSCCSCGGGCCHHHHSTTCC--------CCTHHHHHHHHHHHHHHHHSSCTTCGG
T ss_pred eeeecCCCCCCCccCCcCccCHHHHhCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 998764 34566799999999998864321 478999999999999999999999643
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=384.74 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=172.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||+||+|+. .+|+.||||++...... .+.+.+|+++|++++|||||++++++.+ ++.+|+||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-~~~~~iv~E~ 235 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-DNEMVMIYEF 235 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-SSEEEEEEEC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-CCEEEEEEee
Confidence 5799999999999999999994 67999999999765433 5678999999999999999999997765 6789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC--CcEEeccchhhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK--FEVRLGSLSEVCA 689 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~--~~~kl~DFG~a~~ 689 (766)
|+||+|.++|.++. ..+++.+...|+.||+.||+|||++ +||||||||+|||++.+ +.+||+|||+|+.
T Consensus 236 ~~gg~L~~~i~~~~------~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~ 306 (573)
T 3uto_A 236 MSGGELFEKVADEH------NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 306 (573)
T ss_dssp CCCCBHHHHHTCTT------SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred cCCCcHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence 99999999996543 2489999999999999999999998 99999999999999854 8999999999987
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ....+||+.|+|||.+.+.. ++.++||||+||++|||++|+.||...
T Consensus 307 ~~~~~~~~~~~GT~~y~APEv~~~~~---------y~~~~DiWSlGvilyeml~G~~Pf~~~ 359 (573)
T 3uto_A 307 LDPKQSVKVTTGTAEFAAPEVAEGKP---------VGYYTDMWSVGVLSYILLSGLSPFGGE 359 (573)
T ss_dssp CCTTSEEEEECSSGGGCCHHHHTTCC---------BCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred ccCCCceeeeEECccccCHHHhCCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 7433 34568999999999987654 467999999999999999999999543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=383.66 Aligned_cols=288 Identities=35% Similarity=0.519 Sum_probs=192.2
Q ss_pred hhccCCCCCEEecCCCCCCCCCchhhhhC--------------------------CCCCCEEEccCCCCCccCCcccCCC
Q 004248 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQ--------------------------LPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~g~ip~~~~~~--------------------------l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.+.++++|+.|++++|.+.|.+|..+..- +++|++|+|++|.+++.+|..++++
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 47778888888888887777777766541 3345555555555555566666666
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEc
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNV 245 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 245 (766)
++|++|+|++|++++.+|..++++++|++|++++|++++.+|..+..+++|+.|+|++|++++.+|..++++++|++|+|
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 66666666666666666666666667777777777776666666666777777777777777666766777777777777
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCcc------------------
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLF------------------ 307 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~------------------ 307 (766)
++|++++.+|.+++++++|++|+|++|+++|.+|..++++++|+.|++++|.++|.+|..++
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 77777767777777777777777777777777777777777777777777776666654332
Q ss_pred ---------------------------------------------------CCCCcccEEEccCCCCCCCCCcccCCCCC
Q 004248 308 ---------------------------------------------------PTVSQLQIIVLRQNGFTGPPPDVLWSMPQ 336 (766)
Q Consensus 308 ---------------------------------------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 336 (766)
..+++|+.|+|++|+++|.+|..++++++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 22345666666666666666666666666
Q ss_pred CCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcC---CCCCCEEeccCCcCccccChh
Q 004248 337 LRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV---LGRFRLVDLSGNYFEGRVPEY 400 (766)
Q Consensus 337 L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~---l~~l~~ldLs~N~l~g~~p~~ 400 (766)
|+.|||++|+++|.+|... ..+++|+.||||+|+++|.+|.. +..|+.||||+|+++|.||..
T Consensus 658 L~~L~Ls~N~l~g~ip~~l-~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCEEeCcCCccCCCCChHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 6666666666666666433 44566666666666666666643 455666666666666666653
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=341.60 Aligned_cols=199 Identities=16% Similarity=0.197 Sum_probs=174.2
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|...+.||+|+||.||+|+. .+|+.||||++...... .+++.+|++++++++||||+++++++.. ++..|+|
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-~~~~~lv 92 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET-EKTLYLI 92 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-CCEEEEE
Confidence 46799999999999999999995 68999999999765433 4578899999999999999999998765 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++|+|.+++...+. +++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 93 ~e~~~~~~L~~~l~~~~~-------l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 162 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHGR-------MKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSN 162 (328)
T ss_dssp ECCCTTCBHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCG
T ss_pred EECCCCCcHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCce
Confidence 999999999999976543 89999999999999999999998 99999999999999999999999999998
Q ss_pred hcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... ......+||+.|+|||.+....+ .+.++||||+||++|||+||+.||....
T Consensus 163 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~pf~~~~ 218 (328)
T 3fe3_A 163 EFTVGGKLDAFCGAPPYAAPELFQGKKY--------DGPEVDVWSLGVILYTLVSGSLPFDGQN 218 (328)
T ss_dssp GGSSSCGGGTTSSSGGGCCHHHHHTCCC--------CSHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ecCCCCccccccCCcceeCcccccCCCc--------CCchhhhhhhHHHHHHHHhCCCCCCCCC
Confidence 653 23455679999999998765543 3579999999999999999999996543
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=338.52 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=172.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||+++... ...+.+.+|++++++++||||+++++++.. .+..|+|
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~-~~~~~lv 83 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-HDRLCFV 83 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe-CCEEEEE
Confidence 5788899999999999999995 579999999997542 235678999999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.+ .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 84 ~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~ 153 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-------VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK 153 (337)
T ss_dssp EECCTTCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchh
Confidence 99999999999997654 389999999999999999999998 99999999999999999999999999998
Q ss_pred hc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .......+||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 154 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~Pf~~~ 208 (337)
T 1o6l_A 154 EGISDGATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQ 208 (337)
T ss_dssp CSCCTTCCBCCCEECGGGCCGGGGSSSC---------BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hcccCCCcccccccChhhCChhhhcCCC---------CCchhhcccchhHHHHHhcCCCCCCCC
Confidence 64 22345568999999999886544 478999999999999999999999643
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.99 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=176.1
Q ss_pred cHHHHHHHhCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEE
Q 004248 525 TYQQLLAATGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCM 599 (766)
Q Consensus 525 ~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~ 599 (766)
.+.++....++|+..++||+|+||+||+|+.. +++.||||+++.... ..+.+.+|++++.+++|||||+++++|.
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 34555566788999999999999999999964 588999999975322 1335899999999999999999999776
Q ss_pred ecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 600 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
+ ++..|+|||||++|+|.+++.+.. ..+++..+..++.|++.||+|||+. +||||||||+|||++.++.+
T Consensus 145 ~-~~~~~lV~Ey~~gg~L~~~l~~~~------~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~v 214 (437)
T 4aw2_A 145 D-DNNLYLVMDYYVGGDLLTLLSKFE------DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHI 214 (437)
T ss_dssp C-SSEEEEEECCCTTCBHHHHHHTTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCE
T ss_pred e-CCEEEEEEecCCCCcHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCE
Confidence 5 578999999999999999997632 2489999999999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 680 RLGSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 680 kl~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+|||+|+..... ....+||+.|+|||.+.....+... ++.++|||||||++|||+||+.||...
T Consensus 215 kL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~----~~~~~DvwSlGvil~elltG~~Pf~~~ 284 (437)
T 4aw2_A 215 RLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGR----YGPECDWWSLGVCMYEMLYGETPFYAE 284 (437)
T ss_dssp EECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCE----ECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCC----CCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence 99999999765332 2235789999999987521111111 578999999999999999999999644
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=336.76 Aligned_cols=196 Identities=17% Similarity=0.164 Sum_probs=174.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||+++... ...+.+.+|+.+++.++|||||++++++.+ .+..|+|
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-~~~~~lv 84 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-AQQIFMI 84 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-SSEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-CCEEEEE
Confidence 5688899999999999999995 579999999997543 235678899999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. .+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 85 ~e~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~ 154 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-------RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAK 154 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred EeCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcce
Confidence 99999999999997654 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.........+||+.|+|||.+.... ++.++||||+||++|||++|+.||...
T Consensus 155 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~pf~~~ 206 (318)
T 1fot_A 155 YVPDVTYTLCGTPDYIAPEVVSTKP---------YNKSIDWWSFGILIYEMLAGYTPFYDS 206 (318)
T ss_dssp ECSSCBCCCCSCTTTCCHHHHTTCC---------BCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ecCCccccccCCccccCHhHhcCCC---------CCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 8766666678999999999876543 478999999999999999999999643
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=330.54 Aligned_cols=196 Identities=18% Similarity=0.267 Sum_probs=172.3
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++|+..+.||+|+||.||+|. ..+|+.||||++...... .+.+.+|+.++++++|||||++++++.. ++..|+|||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e 97 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-GDELWVVME 97 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-CCEEEEEEE
Confidence 3579999999999999999999 467999999999765443 6779999999999999999999998776 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+. .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++..
T Consensus 98 ~~~~~~L~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~ 166 (297)
T 3fxz_A 98 YLAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQI 166 (297)
T ss_dssp CCTTCBHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred CCCCCCHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 99999999999753 389999999999999999999998 9999999999999999999999999998765
Q ss_pred CC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 167 ~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~pf~~~ 219 (297)
T 3fxz_A 167 TPEQSKRSTMVGTPYWMAPEVVTRKA---------YGPKVDIWSLGIMAIEMIEGEPPYLNE 219 (297)
T ss_dssp CSTTCCBCCCCSCGGGCCHHHHHCSC---------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CCcccccCCccCCcCccChhhhcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 32 233457899999999876544 478999999999999999999999544
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=337.75 Aligned_cols=213 Identities=31% Similarity=0.518 Sum_probs=183.7
Q ss_pred ccccHHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEE
Q 004248 522 ESFTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCM 599 (766)
Q Consensus 522 ~~~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~ 599 (766)
..++++++....++|+..+.||+|+||.||+|...+|+.||||++...... ..++.+|++++++++||||+++++++.
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 97 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 97 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence 468889999999999999999999999999999888999999999754332 347999999999999999999999886
Q ss_pred ecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 600 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
. ++..++||||+++|+|.+++..... ....++|..+..++.|++.||+|||+.+.++|+||||||+|||++.++.+
T Consensus 98 ~-~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~ 173 (326)
T 3uim_A 98 T-PTERLLVYPYMANGSVASCLRERPE---SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEA 173 (326)
T ss_dssp C-SSCCEEEEECCTTCBHHHHHHCCST---TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCE
T ss_pred c-CCceEEEEEeccCCCHHHHHHhccc---cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCE
Confidence 5 5678999999999999999986543 22459999999999999999999999877799999999999999999999
Q ss_pred EeccchhhhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 680 RLGSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 680 kl~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
||+|||+++..... .....+|..|+|||...... ++.++|||||||++|||+||+.||.
T Consensus 174 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~ 236 (326)
T 3uim_A 174 VVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGK---------SSEKTDVFGYGVMLLELITGQRAFD 236 (326)
T ss_dssp EECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSE---------ECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred EeccCccccccCcccccccccccCCcCccCHHHhccCC---------CCccccchhHHHHHHHHHhCCCccc
Confidence 99999999865322 22345899999999875433 4789999999999999999999994
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=332.80 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=179.2
Q ss_pred ccccHHHHHHHhCC----------CCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCC
Q 004248 522 ESFTYQQLLAATGD----------FSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHA 589 (766)
Q Consensus 522 ~~~~~~~l~~~~~~----------~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~ 589 (766)
..++++++.++++. |+..+.||+|+||.||+|+.. +|+.||||++...... .+.+.+|++++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45888999888865 666789999999999999965 7999999999765443 67799999999999999
Q ss_pred CcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCC
Q 004248 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQAS 669 (766)
Q Consensus 590 niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~ 669 (766)
|||++++++.. .+..++||||+++|+|.+++.+. .++|.++..++.|++.||+|||+. +|+||||||+
T Consensus 103 niv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~--------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~ 170 (321)
T 2c30_A 103 NVVEMYKSYLV-GEELWVLMEFLQGGALTDIVSQV--------RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSD 170 (321)
T ss_dssp TBCCEEEEEEE-TTEEEEEECCCCSCBHHHHHTTC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGG
T ss_pred CcceEEEEEEE-CCEEEEEEecCCCCCHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHH
Confidence 99999998876 56899999999999999998642 389999999999999999999998 9999999999
Q ss_pred CeeeCCCCcEEeccchhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 670 SILLDDKFEVRLGSLSEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 670 NILl~~~~~~kl~DFG~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
||+++.++.+||+|||+++..... .....||+.|+|||...... ++.++|||||||++|||+||+.||
T Consensus 171 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Dv~slG~il~el~~g~~pf 241 (321)
T 2c30_A 171 SILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSL---------YATEVDIWSLGIMVIEMVDGEPPY 241 (321)
T ss_dssp GEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred HEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCC---------CCchhhHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999765332 33457899999999876543 478999999999999999999999
Q ss_pred CCC
Q 004248 747 LSS 749 (766)
Q Consensus 747 ~~~ 749 (766)
...
T Consensus 242 ~~~ 244 (321)
T 2c30_A 242 FSD 244 (321)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=349.59 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=175.1
Q ss_pred HHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEe
Q 004248 526 YQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCME 600 (766)
Q Consensus 526 ~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~ 600 (766)
+.++....++|+..++||+|+||.||+|+. .+++.||||++..... ..+.+.+|+++++.++|||||++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 344555677899999999999999999995 5689999999975321 23468899999999999999999997765
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
++..|+|||||++|+|.+++.+. .+++..+..++.||+.||+|||+. +||||||||+|||++.++.+|
T Consensus 141 -~~~~~lV~E~~~gg~L~~~l~~~--------~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ik 208 (410)
T 3v8s_A 141 -DRYLYMVMEYMPGGDLVNLMSNY--------DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLK 208 (410)
T ss_dssp -SSEEEEEECCCTTEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred -CCEEEEEEeCCCCCcHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEE
Confidence 67899999999999999999653 289999999999999999999998 999999999999999999999
Q ss_pred eccchhhhhcCCC----CccceeeecccCCCCCCCCce-eeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGSS-GMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~~-g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||+|+..... ....+||+.|+|||.+..... ++ ++.++|||||||++|||+||+.||...
T Consensus 209 L~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~------~~~~~DiwSlGvilyell~G~~Pf~~~ 276 (410)
T 3v8s_A 209 LADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGY------YGRECDWWSVGVFLYEMLVGDTPFYAD 276 (410)
T ss_dssp ECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCE------EETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcC------CCCcceEecchHHHHHHHhCCCCCCCC
Confidence 9999999876432 235679999999998764331 11 478999999999999999999999643
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=341.46 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=171.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|.. .+++.||||.+.... ...+.+.+|++++++++|||||++++++.+ ++..|+|
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-~~~~~lv 93 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQD-EEDMFMV 93 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-CCEEEEE
Confidence 4688899999999999999995 568999999997543 225679999999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.. .+++.++..++.|++.||+|||+. +||||||||+|||++.++.+||+|||+++
T Consensus 94 ~e~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~ 163 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-------HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAA 163 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceee
Confidence 99999999999997643 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
... ......+||+.|+|||.+....... ++.++|||||||++|||+||+.||..
T Consensus 164 ~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~------~~~~~DiwSlG~il~elltG~~Pf~~ 219 (384)
T 4fr4_A 164 MLPRETQITTMAGTKPYMAPEMFSSRKGAG------YSFAVDWWSLGVTAYELLRGRRPYHI 219 (384)
T ss_dssp ECCTTCCBCCCCSCGGGCCGGGTCCCSSCC------BCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred eccCCCceeccCCCccccCCeeeccCCCCC------CCccceeechHHHHHHHHhCCCCCCC
Confidence 763 2345668999999999876432111 57899999999999999999999953
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=338.78 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=174.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++.... ...+.+.+|++++++++|||||++++++.+ ++..|+|
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv 119 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-NSNLYMV 119 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-CCEEEEE
Confidence 4688899999999999999995 579999999997543 235678999999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.+. +++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 120 ~e~~~gg~L~~~l~~~~~-------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~ 189 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIGR-------FSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAK 189 (350)
T ss_dssp EECCTTCBHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EcCCCCCcHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccce
Confidence 999999999999986543 89999999999999999999998 99999999999999999999999999999
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.........+||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 190 ~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~Pf~~~ 241 (350)
T 1rdq_E 190 RVKGRTWTLCGTPEALAPEIILSKG---------YNKAVDWWALGVLIYEMAAGYPPFFAD 241 (350)
T ss_dssp ECSSCBCCCEECGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eccCCcccccCCccccCHHHhcCCC---------CCCcCCEecccHhHhHHhhCCCCCCCC
Confidence 8766666778999999999876543 478999999999999999999999643
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=341.16 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=167.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 606 (766)
.++|+..++||+|+||.||+|+. .+|+.||||+++... ...+.+.+|.++++.+ +|||||++++++.. ++..|
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-~~~~~ 100 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT-PDRLF 100 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe-CCEEE
Confidence 46899999999999999999995 568999999997542 2356788999999998 69999999997765 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|||||++|+|.+++.+.+. +++.++..++.||+.||+|||+. +||||||||+|||++.++.+||+|||+
T Consensus 101 lv~E~~~gg~L~~~l~~~~~-------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~ 170 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSRR-------FDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170 (353)
T ss_dssp EEEECCCSCBHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred EEEeCCCCCcHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccc
Confidence 99999999999999976543 89999999999999999999998 999999999999999999999999999
Q ss_pred hhhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+... ......+||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 171 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~G~~Pf~~~ 227 (353)
T 3txo_A 171 CKEGICNGVTTATFCGTPDYIAPEILQEML---------YGPAVDWWAMGVLLYEMLCGHAPFEAE 227 (353)
T ss_dssp CBCSCC---------CCGGGCCHHHHHHHH---------CTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eeecccCCccccccCCCcCeEChhhcCCCC---------cCCccCCCcchHHHHHHHhCCCCCCCC
Confidence 98642 2344567999999999875433 478999999999999999999999644
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=348.38 Aligned_cols=211 Identities=16% Similarity=0.153 Sum_probs=176.4
Q ss_pred cHHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEE
Q 004248 525 TYQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCM 599 (766)
Q Consensus 525 ~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~ 599 (766)
.++++....++|+..++||+|+||+||+|+. .+|+.||||+++.... ..+.+.+|.+++.+++|||||++++++.
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 4455555678899999999999999999996 5799999999975332 2345889999999999999999999776
Q ss_pred ecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 600 ~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
+ ++..|+|||||++|+|.+++.+.+ ..+++..+..++.||+.||+|||+. +||||||||+|||++.++++
T Consensus 132 ~-~~~~~lVmE~~~gg~L~~~l~~~~------~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~v 201 (412)
T 2vd5_A 132 D-ENYLYLVMEYYVGGDLLTLLSKFG------ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHI 201 (412)
T ss_dssp C-SSEEEEEECCCCSCBHHHHHHHHS------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCE
T ss_pred e-CCEEEEEEcCCCCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCE
Confidence 5 578999999999999999997643 2489999999999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcCCC----CccceeeecccCCCCCCCCc--eeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 680 RLGSLSEVCAQGGD----AHQSRITRLLRLPQSSEQGS--SGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 680 kl~DFG~a~~~~~~----~~~~~~t~~y~aPe~~~~~~--~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+|||+++..... ....+||+.|+|||.+.... .+... ++.++|||||||++|||+||+.||...
T Consensus 202 kL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~----~~~~~DiwSlGvilyelltG~~Pf~~~ 273 (412)
T 2vd5_A 202 RLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGS----YGPECDWWALGVFAYEMFYGQTPFYAD 273 (412)
T ss_dssp EECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSE----ECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCC----CChHHhhhHHhHHHHHHHhCCCCCCCC
Confidence 99999999876432 22357899999999875210 00011 588999999999999999999999654
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=335.56 Aligned_cols=209 Identities=33% Similarity=0.504 Sum_probs=178.5
Q ss_pred cHHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 525 TYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 525 ~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
.+.++..++++|+..+.||+|+||.||+|+..+|+.||||++...... .+++.+|++++++++||||+++++++.. ++
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~ 108 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-RN 108 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC-TT
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CC
Confidence 334455678899999999999999999999888999999998765433 5789999999999999999999998765 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++||||+++|+|.+++..... ....++|.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~D 182 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDL---PTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITD 182 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCC---CSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECC
T ss_pred eEEEEEEcCCCCcHHHHHhccCC---CccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEee
Confidence 89999999999999999975432 123589999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++.... ......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 183 fg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~ell~g~~p~~~~ 244 (321)
T 2qkw_B 183 FGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGR---------LTEKSDVYSFGVVLFEVLCARSAIVQS 244 (321)
T ss_dssp CTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCB---------CCTHHHHHHHHHHHHHHHHCCTTCSCS
T ss_pred cccccccccccccccccccCCCccccCHHHhcCCC---------CCcccchHhHHHHHHHHHhCCCccccc
Confidence 999976422 123346899999999875433 578999999999999999999999644
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.86 Aligned_cols=313 Identities=19% Similarity=0.193 Sum_probs=239.4
Q ss_pred Cccc--eeecC----------CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCC
Q 004248 77 VWNG--VRCQN----------GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTL 144 (766)
Q Consensus 77 ~W~g--v~C~~----------~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L 144 (766)
.|.+ |.|+. .+++.+++++.... ...+..+.++++|++|++++|.+.+.+|+.....+++|
T Consensus 9 ~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 9 SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIA-------ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp EEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCC-------EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred EEEccccCcCCCCcccCCCCCCccCEEEecCCccC-------cCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 5655 88863 24778888875432 12234688999999999999999888876544569999
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCcc--ccCCCCCCEEEccCCCCCCCCCcc-cCCCCCCCEEec
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSS--LGQLSVLSVLDLSRNSLTGNIPTS-FGLLKNLSSLDI 221 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L 221 (766)
++|+|++|.+++..|..|+++++|++|+|++|++++.+|.. +.++++|++|+|++|++++..|.. |.++++|++|+|
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 99999999999999999999999999999999999866655 999999999999999999888876 899999999999
Q ss_pred cCCcCCCCCCCCCCCC----------------------------------CCccEEEccCCCCCCCCccccCC-------
Q 004248 222 SSNYLTGSIPPGLGTL----------------------------------SKLQYLNVSNNSLASSIPAQLGD------- 260 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l----------------------------------~~L~~L~Ls~N~l~~~~p~~l~~------- 260 (766)
++|.+++..|..+..+ ++|++|++++|++++.+|..+..
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 9999998888776554 56777777777666544432211
Q ss_pred --------------------------------CCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccC
Q 004248 261 --------------------------------LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308 (766)
Q Consensus 261 --------------------------------l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~ 308 (766)
.++|++|++++|++++.+|..++.+++|++|++++|.+++..+. .|.
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~ 320 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFW 320 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTT
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-Hhc
Confidence 24677777777777777777777777888888888877754443 346
Q ss_pred CCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC---cCCCCCCE
Q 004248 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT---PVLGRFRL 385 (766)
Q Consensus 309 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~---~~l~~l~~ 385 (766)
.+++|+.|+|++|++++.+|..+..+++|++|+|++|++++..|.. +..+++|++|++++|.+.+..+ ..+++|+.
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh-ccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 7777888888888777777777777788888888888777666643 3456777788888877776333 23567777
Q ss_pred EeccCCcCccccC
Q 004248 386 VDLSGNYFEGRVP 398 (766)
Q Consensus 386 ldLs~N~l~g~~p 398 (766)
|+|++|++++.+|
T Consensus 400 L~l~~N~l~~~~~ 412 (455)
T 3v47_A 400 IWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCcccCCC
Confidence 8888888877777
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=336.23 Aligned_cols=198 Identities=18% Similarity=0.211 Sum_probs=172.2
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEK 605 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 605 (766)
..++|...++||+|+||.||+|+. .+|+.||||+++... ...+.+.+|.+++.++ +|||||++++++.+ ++..
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~-~~~~ 93 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT-KENL 93 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-SSEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-CCEE
Confidence 457899999999999999999995 568999999997643 2356788999999987 99999999997765 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||+++|+|.+++.+.+ .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG 163 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH-------KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFG 163 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeECh
Confidence 99999999999999997653 389999999999999999999998 99999999999999999999999999
Q ss_pred hhhhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++.. .......+||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 164 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~Pf~~~ 221 (345)
T 1xjd_A 164 MCKENMLGDAKTNTFCGTPDYIAPEILLGQK---------YNHSVDWWSFGVLLYEMLIGQSPFHGQ 221 (345)
T ss_dssp TCBCCCCTTCCBCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hhhhcccCCCcccCCCCCcccCChhhhcCCC---------CCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence 99864 22345567899999999886544 478999999999999999999999643
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=343.26 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=170.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 606 (766)
.++|+..++||+|+||+||+|+. .+++.||||+++..... .+.+.+|..++.++ +|||||++++++.+ ++..|
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-~~~~~ 129 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-ESRLF 129 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC-SSEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE-CCEEE
Confidence 35688999999999999999995 56889999999765432 34688999999887 89999999997765 67899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|||||++|+|.+++.+.+ .+++..+..++.||+.||+|||+. +||||||||+|||++.++.+||+|||+
T Consensus 130 lV~E~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGl 199 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHMQRQR-------KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 199 (396)
T ss_dssp EEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred EEEEcCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecce
Confidence 9999999999999997654 389999999999999999999998 999999999999999999999999999
Q ss_pred hhhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+.. .......+||+.|+|||.+.... ++.++||||+||++|||++|+.||..
T Consensus 200 a~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~---------~~~~~DiwslGvllyell~G~~Pf~~ 255 (396)
T 4dc2_A 200 CKEGLRPGDTTSTFCGTPNYIAPEILRGED---------YGFSVDWWALGVLMFEMMAGRSPFDI 255 (396)
T ss_dssp CBCCCCTTCCBCCCCBCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred eeecccCCCccccccCCcccCCchhhcCCC---------CChHHHHHHHHHHHHHHHhCCCCCcc
Confidence 9863 23345668999999999886554 47899999999999999999999953
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=335.12 Aligned_cols=195 Identities=19% Similarity=0.179 Sum_probs=170.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|+. .+++.||||++...... .+.+.+|.+++.++ +|||||++++++.. ++..|+
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~-~~~~~l 87 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-ESRLFF 87 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe-CCEEEE
Confidence 4688899999999999999995 56899999999765432 45688999999998 89999999997765 578999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.+ .+++..+..++.||+.||+|||+. +|+||||||+|||++.++++||+|||++
T Consensus 88 v~e~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a 157 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-------KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMC 157 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGC
T ss_pred EEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEecccc
Confidence 999999999999997654 389999999999999999999998 9999999999999999999999999999
Q ss_pred hhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+.. .......+||+.|+|||.+.... ++.++||||+||++|||+||+.||..
T Consensus 158 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~pf~~ 212 (345)
T 3a8x_A 158 KEGLRPGDTTSTFCGTPNYIAPEILRGED---------YGFSVDWWALGVLMFEMMAGRSPFDI 212 (345)
T ss_dssp BCSCCTTCCBCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred ccccCCCCcccccCCCccccCccccCCCC---------CChHHhHHHHHHHHHHHHhCCCCcCC
Confidence 863 23345567999999999876543 47899999999999999999999954
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=327.20 Aligned_cols=197 Identities=16% Similarity=0.253 Sum_probs=170.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|...++||+|+||.||+|.. .+++.||+|++..... ..+.|.+|++++++++||||+++++++.+ ++..++||||
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e~ 88 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-DKRLNFITEY 88 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-TTEEEEEEEC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-CCeeEEEEEe
Confidence 4678889999999999999995 5689999999855333 36689999999999999999999998876 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++..... .++|.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 89 ~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 159 (310)
T 3s95_A 89 IKGGTLRGIIKSMDS------QYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMV 159 (310)
T ss_dssp CTTCBHHHHHHHCCT------TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC
T ss_pred cCCCcHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecc
Confidence 999999999976432 489999999999999999999998 99999999999999999999999999997653
Q ss_pred CCC-----------------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 GDA-----------------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~~~-----------------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ....||+.|+|||...... ++.++|||||||++|||++|+.|+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~g~~~~~~~ 225 (310)
T 3s95_A 160 DEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRS---------YDEKVDVFSFGIVLCEIIGRVNADPDY 225 (310)
T ss_dssp --------------------CCCCSCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred cccccccccccccccccccccccCCCcceeCHHHhcCCC---------CCcHHHHHHHHHHHHHHhcCCCCCcch
Confidence 221 1346899999999876543 478999999999999999999998543
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=330.66 Aligned_cols=198 Identities=11% Similarity=0.147 Sum_probs=172.6
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|...+.||+|+||.||+|+. .+++.||+|.+.......+.+.+|++++++++|||||++++++.+ .+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-MEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-TTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEec-CCEEEEEEEe
Confidence 36788999999999999999995 568999999997655556679999999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC--CCcEEeccchhhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD--KFEVRLGSLSEVCA 689 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~--~~~~kl~DFG~a~~ 689 (766)
|++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+|||++. ++.+||+|||+++.
T Consensus 83 ~~g~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~ 153 (321)
T 1tki_A 83 ISGLDIFERINTSA------FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ 153 (321)
T ss_dssp CCCCBHHHHHTSSS------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred CCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeE
Confidence 99999999997543 2489999999999999999999998 9999999999999997 78999999999987
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....+|+.|+|||...... ++.++||||+||++|||+||+.||...
T Consensus 154 ~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 206 (321)
T 1tki_A 154 LKPGDNFRLLFTAPEYYAPEVHQHDV---------VSTATDMWSLGTLVYVLLSGINPFLAE 206 (321)
T ss_dssp CCTTCEEEEEESCGGGSCHHHHTTCE---------ECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCCCCccccccCChhhcCcHHhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence 6432 33456899999999876543 478999999999999999999999543
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=332.35 Aligned_cols=202 Identities=18% Similarity=0.230 Sum_probs=169.7
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecC---CcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERE---NEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~---~~~~lV~E 610 (766)
++|+..++||+|+||.||+|+.. ++.||||++.........+.+|+.++++++|||||++++++.... ...++|||
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e 102 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITA 102 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEe
Confidence 56888999999999999999865 789999999766555566778999999999999999999887632 23799999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC-------CCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC-------TLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
|+++|+|.++++.. .++|.++..++.|+++||+|||+.+ .++|+||||||+|||++.++.+||+|
T Consensus 103 ~~~~g~L~~~l~~~--------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~D 174 (322)
T 3soc_A 103 FHEKGSLSDFLKAN--------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 174 (322)
T ss_dssp CCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECC
T ss_pred cCCCCCHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEcc
Confidence 99999999999753 3899999999999999999999851 33899999999999999999999999
Q ss_pred chhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++..... .....+|..|+|||.+........ .++.++|||||||++|||+||+.||..
T Consensus 175 Fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~----~~~~~~DiwslG~il~el~tg~~pf~~ 240 (322)
T 3soc_A 175 FGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQR----DAFLRIDMYAMGLVLWELASRCTAADG 240 (322)
T ss_dssp CTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCH----HHHHHHHHHHHHHHHHHHHTTBTTSSS
T ss_pred CCcccccccccCccccccCccCccccCHhhcccccccCc----CCCccchhHHHHHHHHHHHhCCCCCCC
Confidence 9999765321 233578999999998765322111 157899999999999999999999954
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=334.42 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=171.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-------KTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
.++|+..+.||+|+||.||+|+. .+|+.||||.+..... ..+.+.+|++++++++|||||++++++.+ ++.
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~ 89 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN-RTD 89 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe-CCE
Confidence 35688899999999999999995 5799999999976432 24689999999999999999999997765 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC----cEE
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF----EVR 680 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~k 680 (766)
.|+||||+++|+|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+|||++.++ .+|
T Consensus 90 ~~lv~e~~~gg~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vk 159 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQKE-------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIK 159 (361)
T ss_dssp EEEEEECCCSCBHHHHHTTCS-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEE
T ss_pred EEEEEEcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEE
Confidence 999999999999999997543 389999999999999999999998 999999999999998877 799
Q ss_pred eccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||+++.... ......||+.|+|||.+.... ++.++||||+||++|||++|+.||...
T Consensus 160 l~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslGvil~~ll~g~~Pf~~~ 221 (361)
T 2yab_A 160 LIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEP---------LGLEADMWSIGVITYILLSGASPFLGD 221 (361)
T ss_dssp ECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred EEecCCceEcCCCCccccCCCCccEECchHHcCCC---------CCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 999999987633 234567999999999876544 468999999999999999999999543
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=340.49 Aligned_cols=201 Identities=10% Similarity=0.111 Sum_probs=168.9
Q ss_pred hCCCCccceeecCCcceEEEEE------EcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC---CCCcccceeEEEecCC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI------LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS---HARLVPLLGHCMEREN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~------~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~~~ 603 (766)
.++|...++||+|+||.||+|. ..+++.||||+++.. ..+++.+|++++++++ |+||+++++++.. ++
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~-~~ 140 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF-QN 140 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC--CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC-SS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec-CC
Confidence 4678889999999999999994 556899999998643 3567888999998887 9999999998876 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC--------
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-------- 675 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-------- 675 (766)
..|+|||||++|+|.+++...... ....++|.+++.|+.||++||+|||+. +||||||||+|||++.
T Consensus 141 ~~~lv~e~~~~g~L~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 141 GSVLVGELYSYGTLLNAINLYKNT--PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp CEEEEECCCCSCBHHHHHHHHHTS--TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC---
T ss_pred CcEEEEeccCCCcHHHHHHHhhcc--cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCcccc
Confidence 899999999999999999753220 123599999999999999999999997 9999999999999998
Q ss_pred ---CCcEEeccchhhhhcC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 676 ---KFEVRLGSLSEVCAQG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 676 ---~~~~kl~DFG~a~~~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++.+||+|||+|+... ......+||..|+|||.+.+.. ++.++|||||||++|||+||+.||.
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~elltg~~pf~ 286 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKP---------WNYQIDYFGVAATVYCMLFGTYMKV 286 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCC---------BSTHHHHHHHHHHHHHHHHSSCCCE
T ss_pred ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCC---------CCccccHHHHHHHHHHHHhCCCccc
Confidence 8999999999996542 1223456899999999886654 4789999999999999999999995
Q ss_pred CCc
Q 004248 748 SSR 750 (766)
Q Consensus 748 ~~~ 750 (766)
...
T Consensus 287 ~~~ 289 (365)
T 3e7e_A 287 KNE 289 (365)
T ss_dssp EEE
T ss_pred cCC
Confidence 443
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=332.16 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=171.4
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|...+.||+|+||.||+|.. .+++.||||++..... ..+.+.+|+++++.++|||||++++++.. ++..++
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-~~~~~l 86 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITT-PTDIVM 86 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-CCEEEE
Confidence 36789999999999999999995 6799999999975422 24579999999999999999999998765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+ +|+|.+++.+.+ .+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||++
T Consensus 87 v~E~~-~g~l~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s 155 (336)
T 3h4j_B 87 VIEYA-GGELFDYIVEKK-------RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLS 155 (336)
T ss_dssp EECCC-CEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCT
T ss_pred EEECC-CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccc
Confidence 99999 689999987654 389999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.... .....+||+.|+|||.+.+..+ .++++||||+||++|||+||+.||...
T Consensus 156 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~ll~g~~Pf~~~ 211 (336)
T 3h4j_B 156 NIMTDGNFLKTSCGSPNYAAPEVINGKLY--------AGPEVDVWSCGIVLYVMLVGRLPFDDE 211 (336)
T ss_dssp BTTTTSBTTCCCTTSTTTSCGGGSCCSGG--------GCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred eeccCCcccccccCCcCcCCHHHHcCCCC--------CCCccchhHHHHHHHHHHhCCCCCCCc
Confidence 86532 2345678999999999865543 368999999999999999999999644
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=334.48 Aligned_cols=198 Identities=14% Similarity=0.137 Sum_probs=171.6
Q ss_pred HhCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccc----cCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQS----VKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEK 605 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 605 (766)
..++|+..++||+|+||.||+|+.. +|+.||||+++... ...+.+.+|.+++..+ +||||+++++++.. .+..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~-~~~~ 96 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-MDRL 96 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC-SSEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc-CCEE
Confidence 3468999999999999999999964 58899999997643 2356788999999988 89999999996654 5789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||+++|+|.+++.+.+ .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 97 ~lv~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG 166 (353)
T 2i0e_A 97 YFVMEYVNGGDLMYHIQQVG-------RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFG 166 (353)
T ss_dssp EEEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCC
Confidence 99999999999999997654 389999999999999999999998 99999999999999999999999999
Q ss_pred hhhhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++.. .......+||+.|+|||.+.... ++.++|||||||++|||++|+.||...
T Consensus 167 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~G~~Pf~~~ 224 (353)
T 2i0e_A 167 MCKENIWDGVTTKTFCGTPDYIAPEIIAYQP---------YGKSVDWWAFGVLLYEMLAGQAPFEGE 224 (353)
T ss_dssp TCBCCCCTTCCBCCCCSCGGGCCHHHHTTCC---------BSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccccCCcccccccCCccccChhhhcCCC---------cCCcccccchHHHHHHHHcCCCCCCCC
Confidence 99864 22345567999999999876544 478999999999999999999999643
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=327.26 Aligned_cols=197 Identities=19% Similarity=0.249 Sum_probs=167.0
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|+..+|+.||||++...... .+.+.+|++++++++|||||++++++.. ++..++||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~ 98 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS-ERCLTLVF 98 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECC-SSCEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEcc-CCEEEEEE
Confidence 3678899999999999999999888999999999654332 4678999999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++ |+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++.
T Consensus 99 e~~~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~ 168 (311)
T 3niz_A 99 EFME-KDLKKVLDENK------TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARA 168 (311)
T ss_dssp ECCS-EEHHHHHHTCT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred cCCC-CCHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCcee
Confidence 9998 58888887543 2489999999999999999999998 999999999999999999999999999987
Q ss_pred cCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.+. ......+|+.|+|||.+..... ++.++||||+||++|||+||+.||..
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~ll~g~~pf~~ 222 (311)
T 3niz_A 169 FGIPVRSYTHEVVTLWYRAPDVLMGSKK--------YSTSVDIWSIGCIFAEMITGKPLFPG 222 (311)
T ss_dssp TTSCCC---CCCCCCTTCCHHHHTTCCS--------CCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cCCCcccccCCcccCCcCCHHHhcCCCC--------CCchHHhHHHHHHHHHHHhCCCCCCC
Confidence 542 2334568999999998754321 57899999999999999999999954
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-37 Score=323.87 Aligned_cols=200 Identities=15% Similarity=0.227 Sum_probs=166.6
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---------------------------HHHHHHHHHHHh
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---------------------------TEAYLLELDFFS 584 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---------------------------~~~~~~E~~~l~ 584 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++...... .+++.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 36788999999999999999985 57899999999654311 246899999999
Q ss_pred hcCCCCcccceeEEEec-CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEe
Q 004248 585 KVSHARLVPLLGHCMER-ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663 (766)
Q Consensus 585 ~l~H~niv~l~~~~~~~-~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH 663 (766)
+++||||+++++++... ++..|+||||+++|+|.+++.. ..+++.++..++.|++.||+|||+. +|+|
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH 160 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--------KPLSEDQARFYFQDLIKGIEYLHYQ---KIIH 160 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--------SCCCHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--------CCCCHHHHHHHHHHHHHHHHHHHHC---Ceec
Confidence 99999999999987652 4578999999999999887642 2489999999999999999999998 9999
Q ss_pred cCCCCCCeeeCCCCcEEeccchhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh
Q 004248 664 RDVQASSILLDDKFEVRLGSLSEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 664 rDlKp~NILl~~~~~~kl~DFG~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
|||||+|||++.++.+||+|||+++..... .....+|+.|+|||........+ .+.++|||||||++|||+
T Consensus 161 ~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~------~~~~~Di~slG~~l~~l~ 234 (298)
T 2zv2_A 161 RDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIF------SGKALDVWAMGVTLYCFV 234 (298)
T ss_dssp CCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCE------ESHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCC------CCchhhhHhHHHHHHHHH
Confidence 999999999999999999999999876432 23457899999999886544322 368899999999999999
Q ss_pred cCCCCCCCC
Q 004248 741 FNNHLNLSS 749 (766)
Q Consensus 741 tG~~p~~~~ 749 (766)
||+.||...
T Consensus 235 ~g~~pf~~~ 243 (298)
T 2zv2_A 235 FGQCPFMDE 243 (298)
T ss_dssp HSSCSSCCS
T ss_pred HCCCCCCCc
Confidence 999999643
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=332.15 Aligned_cols=199 Identities=16% Similarity=0.196 Sum_probs=169.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++...... .+.+.+|++++++++|||||++++++.+ ++..|+||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-~~~~~lv~ 84 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-GNIQYLFL 84 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEec-CCeEEEEE
Confidence 36789999999999999999995 47899999999654432 4678999999999999999999998765 56889999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++.
T Consensus 85 e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 154 (323)
T 3tki_A 85 EYCSGGELFDRIEPDI-------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATV 154 (323)
T ss_dssp ECCTTEEGGGGSBTTT-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EcCCCCcHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccce
Confidence 9999999999996543 389999999999999999999998 999999999999999999999999999975
Q ss_pred cC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.. .......||+.|+|||.+....+ .+.++|||||||++|||+||+.||....
T Consensus 155 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~ll~g~~pf~~~~ 212 (323)
T 3tki_A 155 FRYNNRERLLNKMCGTLPYVAPELLKRREF--------HAEPVDVWSCGIVLTAMLAGELPWDQPS 212 (323)
T ss_dssp CEETTEECCBCSCCSCGGGSCHHHHHCSSB--------CHHHHHHHHHHHHHHHHHHSSCSCSSSC
T ss_pred eccCCcccccCCCccCcCccCcHHhccCCC--------CCCcccHHHHHHHHHHHHhCCCCCCCCc
Confidence 42 12234578999999998765443 3679999999999999999999996543
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=325.14 Aligned_cols=197 Identities=18% Similarity=0.200 Sum_probs=167.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+++.||+|++...... .++|.+|++++++++||||+++++++.. ++..|+|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-~~~~~lv 89 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-DDCYYLV 89 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-SSEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-CCeEEEE
Confidence 5688999999999999999994 57899999998653322 4678999999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 90 ~e~~~g~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~ 159 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-------PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAK 159 (294)
T ss_dssp EECCCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSST
T ss_pred EeCCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcc
Confidence 99999999999997654 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
..... .....+|+.|+|||...... ++.++||||+||++|||+||+.||....
T Consensus 160 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~ll~g~~pf~~~~ 216 (294)
T 4eqm_A 160 ALSETSLTQTNHVLGTVQYFSPEQAKGEA---------TDECTDIYSIGIVLYEMLVGEPPFNGET 216 (294)
T ss_dssp TC-------------CCSSCCHHHHHTCC---------CCTTHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred ccccccccccCccccCccccCHhHhcCCC---------CCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 65322 22346899999999876543 4789999999999999999999996543
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=323.10 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=169.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++...... .+.+.+|++++++++|||||++++++.+ ++..++||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~ 80 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-DKKLTLVF 80 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEe-CCEEEEEE
Confidence 5788899999999999999995 56899999999754432 4678999999999999999999998766 57899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++ ++.+.+.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 81 e~~~~-~l~~~~~~~~------~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~ 150 (292)
T 3o0g_A 81 EFCDQ-DLKKYFDSCN------GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARA 150 (292)
T ss_dssp ECCSE-EHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred ecCCC-CHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccccee
Confidence 99985 6666665432 2489999999999999999999998 999999999999999999999999999986
Q ss_pred cCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 690 QGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 690 ~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
.+. ......+|..|+|||....... ++.++||||+||++|||+||+.|++.....
T Consensus 151 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~~~~~p~~~~~~~ 208 (292)
T 3o0g_A 151 FGIPVRCYSAEVVTLWYRPPDVLFGAKL--------YSTSIDMWSAGCIFAELANAGRPLFPGNDV 208 (292)
T ss_dssp CCSCCSCCCSCCSCGGGCCHHHHTTCSC--------CCTHHHHHHHHHHHHHHTTTSCCSCCCSSH
T ss_pred cCCccccccCCccccCCcChHHHcCCCC--------cCchHHHHHHHHHHHHHHHcCCCCcCCCCH
Confidence 532 2344577999999998755432 478999999999999999999997655443
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=333.10 Aligned_cols=197 Identities=17% Similarity=0.210 Sum_probs=170.4
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|+..+.||+|+||.||+|.. .+|+.||||++...... .+.+.+|++++++++|||||++++++.+ ++..|+|
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~~~lv 106 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-ESFHYLV 106 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-CCEEEEE
Confidence 45689999999999999999995 56899999999765433 4578999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEEeccch
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVRLGSLS 685 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl~DFG 685 (766)
|||+++|+|.+++..+. .+++.++..++.||+.||+|||+. +|+||||||+|||++.+ +.+||+|||
T Consensus 107 ~e~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG 176 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFG 176 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCT
T ss_pred EecCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecC
Confidence 99999999999997543 389999999999999999999998 99999999999999865 459999999
Q ss_pred hhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....||+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 177 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~~ll~g~~Pf~~~ 233 (362)
T 2bdw_A 177 LAIEVNDSEAWHGFAGTPGYLSPEVLKKDP---------YSKPVDIWACGVILYILLVGYPPFWDE 233 (362)
T ss_dssp TCBCCTTCCSCCCSCSCTTTCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cceEecCCcccccCCCCccccCHHHHccCC---------CCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 99876432 33457899999999876543 478999999999999999999999543
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=335.90 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=163.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHH-HhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDF-FSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~-l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..++||+|+||.||+|+. .+++.||||+++..... .+.+.+|..+ ++.++|||||++++++.. ++..|+
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~-~~~~~l 116 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-ADKLYF 116 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC-SSEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe-CCEEEE
Confidence 5688999999999999999995 56889999999765432 3457778877 577899999999997765 578999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.+ .+++..+..++.||+.||+|||+. +|+||||||+|||++.++++||+|||++
T Consensus 117 v~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a 186 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-------CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLC 186 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBC
T ss_pred EEeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccc
Confidence 999999999999997654 388999999999999999999998 9999999999999999999999999999
Q ss_pred hhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.. .......+||+.|+|||.+.... ++.++|||||||++|||++|+.||...
T Consensus 187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~G~~Pf~~~ 242 (373)
T 2r5t_A 187 KENIEHNSTTSTFCGTPEYLAPEVLHKQP---------YDRTVDWWCLGAVLYEMLYGLPPFYSR 242 (373)
T ss_dssp GGGBCCCCCCCSBSCCCCCCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred cccccCCCccccccCCccccCHHHhCCCC---------CCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence 864 22345568999999999876544 478999999999999999999999643
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=333.82 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=163.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++.......+.+.+|+.++++++|||||++++++.. ++..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILT-PTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEee-CCEEEEEEEe
Confidence 35788999999999999999995 479999999998766556789999999999999999999998775 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc--EEeccchhhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE--VRLGSLSEVCA 689 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~--~kl~DFG~a~~ 689 (766)
+++|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+|||++.++. +||+|||+++.
T Consensus 98 ~~~~~L~~~l~~~~-------~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~ 167 (361)
T 3uc3_A 98 ASGGELYERICNAG-------RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKS 167 (361)
T ss_dssp CCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC--
T ss_pred CCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCcccc
Confidence 99999999997654 389999999999999999999998 9999999999999987765 99999999975
Q ss_pred c--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 Q--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. ........+|+.|+|||.+....+ .+.++||||+||++|||+||+.||...
T Consensus 168 ~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~Pf~~~ 221 (361)
T 3uc3_A 168 SVLHSQPKSTVGTPAYIAPEVLLRQEY--------DGKIADVWSCGVTLYVMLVGAYPFEDP 221 (361)
T ss_dssp -------------CTTSCHHHHHCSSC--------CHHHHHHHHHHHHHHHHHHSSCSCC--
T ss_pred ccccCCCCCCcCCCCcCChhhhcCCCC--------CCCeeeeehhHHHHHHHHhCCCCCCCC
Confidence 4 233345678999999998765543 245589999999999999999999643
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=326.36 Aligned_cols=199 Identities=21% Similarity=0.295 Sum_probs=162.8
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|+. +|+.||||++...... .++|.+|++++++++|||||++++++.. .+..++||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~ 113 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ-PPNLSIVT 113 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-TTCCEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-CCceEEEE
Confidence 45788899999999999999986 5789999999765433 4579999999999999999999998765 56789999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC--eEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP--FVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||+++|+|.+++.+... ...+++.++..++.|++.||+|||+. + |+||||||+||+++.++.+||+|||++
T Consensus 114 e~~~~~~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a 186 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGA----REQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186 (309)
T ss_dssp ECCTTCBHHHHHHSTTH----HHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC--
T ss_pred ecCCCCcHHHHHhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCC
Confidence 99999999999975431 12489999999999999999999997 6 999999999999999999999999999
Q ss_pred hhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+..... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~elltg~~Pf~~~ 242 (309)
T 3p86_A 187 RLKASTFLSSKSAAGTPEWMAPEVLRDEP---------SNEKSDVYSFGVILWELATLQQPWGNL 242 (309)
T ss_dssp ---------------CCTTSCHHHHTTCC---------CCTTHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred ccccccccccccCCCCccccChhhhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 765332 33457899999999876544 468999999999999999999999643
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=321.80 Aligned_cols=196 Identities=18% Similarity=0.273 Sum_probs=167.0
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|+..+|+.||||++...... .+.+.+|++++++++||||+++++++.. ++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 80 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-KKRLVLVFE 80 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-SSCEEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEcc-CCeEEEEEE
Confidence 568889999999999999999888999999999654322 4678999999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++ +|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 81 ~~~~-~l~~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 150 (288)
T 1ob3_A 81 HLDQ-DLKKLLDVCEG------GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAF 150 (288)
T ss_dssp CCSE-EHHHHHHTSTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHH
T ss_pred ecCC-CHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECcccccc
Confidence 9985 99999875432 489999999999999999999998 9999999999999999999999999999876
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+.. .....+|+.|+|||....... ++.++||||+||++|||+||+.||..
T Consensus 151 ~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~~g~~pf~~ 203 (288)
T 1ob3_A 151 GIPVRKYTHEIVTLWYRAPDVLMGSKK--------YSTTIDIWSVGCIFAEMVNGTPLFPG 203 (288)
T ss_dssp CC---------CCCTTCCHHHHTTCCS--------CCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CccccccccccccccccCchheeCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 422 334567999999998754321 57899999999999999999999954
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=325.13 Aligned_cols=203 Identities=21% Similarity=0.330 Sum_probs=157.7
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|.. .+|+.||||+++.... ..+.+.+|++++++++|||||++++++.. ++..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~ 82 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-ENKLTLVF 82 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-TTEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-CCeEEEEE
Confidence 46789999999999999999984 5789999999975433 25679999999999999999999997765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||++ |+|.+++...... .....+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++.
T Consensus 83 e~~~-~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 157 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVG-NTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARA 157 (317)
T ss_dssp ECCC-CBHHHHHHHHHSS-SCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred EecC-CCHHHHHHhcccc-ccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence 9998 6999998754211 1123589999999999999999999998 999999999999999999999999999986
Q ss_pred cCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ......+|..|+|||.+..... ++.++|||||||++|||+||+.||...
T Consensus 158 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~pf~~~ 212 (317)
T 2pmi_A 158 FGIPVNTFSSEVVTLWYRAPDVLMGSRT--------YSTSIDIWSCGCILAEMITGKPLFPGT 212 (317)
T ss_dssp TTSCCCCCCCCCSCCTTCCHHHHTTCCC--------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCCCcccCCCCcccccccCchHhhCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 532 2334578999999998754321 578999999999999999999999543
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=328.38 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=162.2
Q ss_pred CCCCccceeecCCcceEEEEEE----cCCcEEEEEEeecccc-----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
++|+..+.||+|+||.||+|+. .+|+.||||+++.... ..+.+.+|++++++++|||||++++++.. ++.
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~ 95 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT-GGK 95 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC-SSC
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc-CCE
Confidence 5688899999999999999986 5789999999975432 24568899999999999999999997765 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+||||+++|+|.+++.+.+ .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+||
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Df 165 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-------IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDF 165 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCC
T ss_pred EEEEEeCCCCCcHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeC
Confidence 999999999999999997654 389999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 685 SEVCAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+++... .......||..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 166 g~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~pf~~~ 224 (327)
T 3a62_A 166 GLCKESIHDGTVTHTFCGTIEYMAPEILMRSG---------HNRAVDWWSLGALMYDMLTGAPPFTGE 224 (327)
T ss_dssp SCC----------CTTSSCCTTSCHHHHTTSC---------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CcccccccCCccccccCCCcCccCHhhCcCCC---------CCCcccchhHHHHHHHHHHCCCCCCCC
Confidence 9997542 2234457899999999876543 478999999999999999999999643
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.22 Aligned_cols=199 Identities=20% Similarity=0.196 Sum_probs=172.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..++||+|+||.||+|+. .+|+.||||++..... ..+.+.+|+++|++++|||||++++++.+ ++..|+
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-~~~l~l 261 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-KDALCL 261 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee-CCEEEE
Confidence 35688899999999999999995 5799999999975432 25678999999999999999999997765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|||||++|+|.+++...+. ..+++..+..|+.||+.||+|||+. +||||||||+|||++.++.+||+|||++
T Consensus 262 VmEy~~gg~L~~~l~~~~~-----~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla 333 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYHMGQ-----AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLA 333 (576)
T ss_dssp EECCCCSCBHHHHHHSSSS-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTC
T ss_pred EEEcCCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccc
Confidence 9999999999999975432 3489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+..... ....+||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 334 ~~~~~~~~~~~~~GT~~Y~APEvl~~~~---------~~~~~DiwSLGvilyeLltG~~PF~~~ 388 (576)
T 2acx_A 334 VHVPEGQTIKGRVGTVGYMAPEVVKNER---------YTFSPDWWALGCLLYEMIAGQSPFQQR 388 (576)
T ss_dssp EECCTTCCEECCCSCGGGCCHHHHTTCE---------ESSHHHHHHHHHHHHHHHHSSCSSSCS
T ss_pred eecccCccccccCCCccccCHHHHcCCC---------CCccchHHHHHHHHHHHHhCCCCCccc
Confidence 876332 34467899999999886543 478999999999999999999999654
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=324.81 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=170.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|...+.||+|+||.||+|.. .+|+.||||.+..... ..+++.+|++++++++|||||++++++.. ++..
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~ 89 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN-KTDV 89 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe-CCEE
Confidence 4588899999999999999995 5689999999975432 25689999999999999999999998765 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC----cEEe
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF----EVRL 681 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~kl 681 (766)
++||||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+|||++.++ .+||
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl 159 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKE-------SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKI 159 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSS-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHhcC-------CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEE
Confidence 99999999999999997543 389999999999999999999998 999999999999999887 8999
Q ss_pred ccchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||+++... .......+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 160 ~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 220 (326)
T 2y0a_A 160 IDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEP---------LGLEADMWSIGVITYILLSGASPFLGD 220 (326)
T ss_dssp CCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred EECCCCeECCCCCccccccCCcCcCCceeecCCC---------CCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 9999998763 2334567899999999875443 478999999999999999999999543
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=332.69 Aligned_cols=203 Identities=13% Similarity=0.260 Sum_probs=169.1
Q ss_pred CCCCccceeecCCcceEEEEEE--------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL--------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|...+.||+|+||.||+|+. .++..||||+++..... .+++.+|+++++++ +|||||+++++|.+ +
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~-~ 159 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-D 159 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS-S
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc-C
Confidence 5688889999999999999984 23568999999754332 46799999999999 89999999998765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..|+||||+++|+|.+++....... .....+++.++..++.||++||+|||+. +||||||||+|||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence 68999999999999999998653210 0123589999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
+.++.+||+|||+++..... .....+|..|+|||.+.... ++.++|||||||++|||+| |+.||.
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DvwslG~il~ellt~g~~p~~ 307 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRV---------YTHQSDVWSFGVLMWEIFTLGGSPYP 307 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCC---------CCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCC---------CCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999865321 23345678899999876543 5789999999999999999 999985
Q ss_pred CC
Q 004248 748 SS 749 (766)
Q Consensus 748 ~~ 749 (766)
..
T Consensus 308 ~~ 309 (370)
T 2psq_A 308 GI 309 (370)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=317.42 Aligned_cols=197 Identities=20% Similarity=0.297 Sum_probs=172.0
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|+..+++.||||++.......+++.+|++++++++||||+++++++.+ ++..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCceEEEEEeCC
Confidence 4678889999999999999998889999999998776667889999999999999999999998765 567999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 89 ~~~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 159 (269)
T 4hcu_A 89 HGCLSDYLRTQRG------LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 159 (269)
T ss_dssp TCBHHHHHHTTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred CCcHHHHHHhcCc------ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccc
Confidence 9999999975432 489999999999999999999998 9999999999999999999999999999865321
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....+|..|+|||...... ++.++||||+||++|||+| |+.||...
T Consensus 160 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~ll~~g~~p~~~~ 211 (269)
T 4hcu_A 160 QYTSSTGTKFPVKWASPEVFSFSR---------YSSKSDVWSFGVLMWEVFSEGKIPYENR 211 (269)
T ss_dssp HHHSTTSTTCCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred ccccccCcccccccCCHHHhcCCC---------CCchhhhHHHHHHHHHHhcCCCCCCCCC
Confidence 22344577899999875443 4789999999999999999 99998543
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=329.39 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=169.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc------cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS------VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..+.||+|+||.||+|.. .+|+.||||++.... ...+.+.+|++++++++|||||++++++.+ ++..|
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-~~~~~ 102 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSS-DGMLY 102 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEe-CCEEE
Confidence 3588899999999999999985 579999999996432 135789999999999999999999998766 57899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc---EEecc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE---VRLGS 683 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~---~kl~D 683 (766)
+|||||++|+|.+.+.+... ....+++..+..++.||+.||+|||+. +|+||||||+|||++.++. +||+|
T Consensus 103 lv~e~~~g~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~D 176 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRAD---AGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGG 176 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECC
T ss_pred EEEeCCCCCCHHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEec
Confidence 99999999999988865321 113489999999999999999999998 9999999999999987655 99999
Q ss_pred chhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++..... .....+|+.|+|||.+.... ++.++||||+||++|||+||+.||..
T Consensus 177 fg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~~ll~g~~pf~~ 235 (351)
T 3c0i_A 177 FGVAIQLGESGLVAGGRVGTPHFMAPEVVKREP---------YGKPVDVWGCGVILFILLSGCLPFYG 235 (351)
T ss_dssp CTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred CcceeEecCCCeeecCCcCCcCccCHHHHcCCC---------CCchHhhHHHHHHHHHHHHCCCCCCC
Confidence 9999876432 23457899999999876544 47899999999999999999999964
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=338.56 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=169.3
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|+..+.||+|+||.||+|.. .+|+.||+|++...... .+.+.+|++++++++|||||++++++.+ ++..|+|
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~~lv 88 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-EGHHYLI 88 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-SSEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-CCEEEEE
Confidence 45689999999999999999984 67999999999765432 4578999999999999999999997765 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC---CCCcEEeccch
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD---DKFEVRLGSLS 685 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~DFG 685 (766)
||||++|+|.+.+..+. .+++.++..++.||+.||+|||+. +|+||||||+|||++ .++.+||+|||
T Consensus 89 ~E~~~gg~L~~~i~~~~-------~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG 158 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE-------YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFG 158 (444)
T ss_dssp ECCCBCCBHHHHHHHCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCS
T ss_pred EEeCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCc
Confidence 99999999999997654 389999999999999999999998 999999999999998 46789999999
Q ss_pred hhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....||+.|+|||.+.... ++.++||||+||++|||++|+.||...
T Consensus 159 ~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~---------~~~~~DIwSlGvilyell~G~~Pf~~~ 216 (444)
T 3soa_A 159 LAIEVEGEQQAWFGFAGTPGYLSPEVLRKDP---------YGKPVDLWACGVILYILLVGYPPFWDE 216 (444)
T ss_dssp SCBCCCTTCCBCCCSCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred eeEEecCCCceeecccCCcccCCHHHhcCCC---------CCCccccHHHHHHHHHHHhCCCCCCCc
Confidence 99776432 23457899999999876544 478999999999999999999999543
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=339.99 Aligned_cols=198 Identities=21% Similarity=0.328 Sum_probs=169.5
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++|+..+.||+|+||.||+|... |+.||||+++... ..++|.+|+++|++++|||||++++++.+.++..|+|||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~ 269 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 269 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence 356788899999999999999875 7799999997544 45789999999999999999999998877555799999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.++++..+. ..+++..+..++.||++||+|||++ +|+||||||+|||+++++.+||+|||+++....
T Consensus 270 ~~g~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 341 (450)
T 1k9a_A 270 AKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 341 (450)
T ss_dssp TTCBHHHHHHHHCT-----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC-
T ss_pred CCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccc
Confidence 99999999986542 2479999999999999999999998 999999999999999999999999999986644
Q ss_pred CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 693 DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 693 ~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
......++..|+|||.+.... ++.++|||||||++|||+| |+.||...
T Consensus 342 ~~~~~~~~~~y~aPE~~~~~~---------~~~~sDvwslG~~l~el~t~g~~P~~~~ 390 (450)
T 1k9a_A 342 TQDTGKLPVKWTAPEALREKK---------FSTKSDVWSFGILLWEIYSFGRVPYPRI 390 (450)
T ss_dssp -----CCCTTTSCHHHHHSSC---------CCHHHHHHHHHHHHHHHHTTTCCSSTTS
T ss_pred cccCCCCCcceeCHHHhcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 444445678899999876543 5789999999999999998 99999543
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=324.00 Aligned_cols=198 Identities=22% Similarity=0.305 Sum_probs=166.8
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCC------
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMEREN------ 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~------ 603 (766)
.++|+..+.||+|+||.||+|+.. +|+.||||+++..... .+.+.+|++++++++|||||++++++.+...
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 356888999999999999999964 7999999999754432 5789999999999999999999998765321
Q ss_pred --------------------------------------------------cEEEEEeeCCCCChhhhhhccCCCCCcCCC
Q 004248 604 --------------------------------------------------EKFLVYKYMPNGDLSSSLYRKTNTEDDLQS 633 (766)
Q Consensus 604 --------------------------------------------------~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~ 633 (766)
..++|||||++|+|.+++.+... ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----~~~ 160 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS----LED 160 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS----GGG
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC----ccc
Confidence 27999999999999999986542 234
Q ss_pred CCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC---------------Cccce
Q 004248 634 LDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD---------------AHQSR 698 (766)
Q Consensus 634 l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~---------------~~~~~ 698 (766)
.++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+++..... .....
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 67888999999999999999998 9999999999999999999999999999876432 12346
Q ss_pred eeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 699 ITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 699 ~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+|+.|+|||...... ++.++|||||||++|||+||..|+
T Consensus 238 gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~~~~~ 276 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNN---------YSHKVDIFSLGLILFELLYSFSTQ 276 (332)
T ss_dssp -CGGGSCHHHHHCCC---------CCTHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCcCccChHHhcCCC---------CcchhhHHHHHHHHHHHHHcCCCh
Confidence 899999999876543 578999999999999999998876
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=326.97 Aligned_cols=209 Identities=18% Similarity=0.190 Sum_probs=170.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~lV~ 609 (766)
++|...++||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++||||+++++++.... ...++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 4588899999999999999995 4589999999975442 2577899999999999999999999876533 3689999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee----CCCCcEEeccch
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL----DDKFEVRLGSLS 685 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DFG 685 (766)
||+++|+|.+++..... ...+++.++..++.|++.||+|||+. +|+||||||+|||+ +.++.+||+|||
T Consensus 89 e~~~~~~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg 161 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSN----AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (319)
T ss_dssp ECCTTCBHHHHHHSGGG----TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred eCCCCCCHHHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCC
Confidence 99999999999976432 12389999999999999999999998 99999999999999 888889999999
Q ss_pred hhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 686 EVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 686 ~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+++..... .....+|..|+|||.+....... .....++.++|||||||++|||+||+.||....
T Consensus 162 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~-~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 227 (319)
T 4euu_A 162 AARELEDDEQFVSLYGTEEYLHPDMYERAVLRK-DHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227 (319)
T ss_dssp TCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCC-CCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTT
T ss_pred CceecCCCCceeecccCCCccCHHHhhhccccc-cccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99876332 33456899999999764210000 000016889999999999999999999996433
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.25 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=172.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|+++++.++||||+++++++.. .+..|+|
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~-~~~~~lv 94 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST-PSDIFMV 94 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEE
Confidence 5788899999999999999995 4799999999975432 24679999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.+ .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 95 ~E~~~gg~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~ 164 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-------RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSN 164 (476)
T ss_dssp EECCSSEEHHHHTTSSS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred EeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchh
Confidence 99999999999997543 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....+||+.|+|||.+.+..+ .+.++||||+||++|||++|+.||...
T Consensus 165 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwSlGvil~elltG~~Pf~~~ 219 (476)
T 2y94_A 165 MMSDGEFLRTSCGSPNYAAPEVISGRLY--------AGPEVDIWSSGVILYALLCGTLPFDDD 219 (476)
T ss_dssp ECCTTCCBCCCCSCSTTCCHHHHTTCCB--------CSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hccccccccccCCCcCeEChhhccCCCC--------CCCcceehhhHHHHHHHhhCCCCCCCC
Confidence 7633 2345678999999998765543 367999999999999999999999654
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.25 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=164.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-----C
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-----N 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~ 603 (766)
.++|+..+.||+|+||.||+|.. .+|+.||||++...... .+++.+|++++++++|||||++++++...+ .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46788999999999999999995 67999999999653322 467899999999999999999999876432 3
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+||||+ +++|.+++... .+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--------~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 171 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILD 171 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECC
T ss_pred eEEEEEecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEe
Confidence 469999999 78999998752 389999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++..........+|++|+|||.+..... ++.++||||+||++|||++|+.||...
T Consensus 172 fg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~pf~~~ 229 (367)
T 1cm8_A 172 FGLARQADSEMTGYVVTRWYRAPEVILNWMR--------YTQTVDIWSVGCIMAEMITGKTLFKGS 229 (367)
T ss_dssp CTTCEECCSSCCSSCSCGGGCCTHHHHTTTC--------CCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecccccccccCcCcCCCCcCCHHHHhCCCC--------CChhhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999887666667788999999998754221 578999999999999999999999543
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=343.43 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=172.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...++||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++|||||++++++.. .+..|+|
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-~~~l~lV 263 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET-KTDLCLV 263 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-CCEEEEE
Confidence 5688889999999999999996 5799999999975432 24678999999999999999999997655 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+|||++.++++||+|||+++
T Consensus 264 mE~~~gg~L~~~l~~~~~---~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~ 337 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDE---DNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAV 337 (543)
T ss_dssp ECCCTTCBHHHHHHTSST---TSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred EEeccCCCHHHHHHHhhc---ccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceee
Confidence 999999999999976432 123599999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ....+||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 338 ~~~~~~~~~~~~~GT~~Y~APE~l~~~~---------~~~~~DiwSlGvilyelltG~~PF~~~ 392 (543)
T 3c4z_A 338 ELKAGQTKTKGYAGTPGFMAPELLLGEE---------YDFSVDYFALGVTLYEMIAARGPFRAR 392 (543)
T ss_dssp ECCTTCCCBCCCCSCTTTSCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred eccCCCcccccccCCccccChhhhcCCC---------CChHHhcCcchHHHHHHHhCCCCCCCC
Confidence 76332 23458999999999886543 478999999999999999999999643
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=327.87 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=177.5
Q ss_pred cHHHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-----CCCcccceeEE
Q 004248 525 TYQQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-----HARLVPLLGHC 598 (766)
Q Consensus 525 ~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-----H~niv~l~~~~ 598 (766)
++++.....++|...++||+|+||.||+|+. .+++.||||++.......+.+.+|++++++++ |||||++++++
T Consensus 26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~ 105 (360)
T 3llt_A 26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKF 105 (360)
T ss_dssp CCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEE
T ss_pred eeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeeccccee
Confidence 3333344567899999999999999999995 57899999999755444667889999999996 99999999988
Q ss_pred EecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---
Q 004248 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD--- 675 (766)
Q Consensus 599 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~--- 675 (766)
.. .+..++||||+ +|+|.+++..... ..+++.++..++.|++.||+|||+. +||||||||+|||++.
T Consensus 106 ~~-~~~~~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~ 175 (360)
T 3llt_A 106 MY-YDHMCLIFEPL-GPSLYEIITRNNY-----NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYF 175 (360)
T ss_dssp EE-TTEEEEEECCC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTC
T ss_pred eE-CCeeEEEEcCC-CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccc
Confidence 76 56899999999 8999999986543 3489999999999999999999998 9999999999999986
Q ss_pred ----------------------CCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecch
Q 004248 676 ----------------------KFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHG 733 (766)
Q Consensus 676 ----------------------~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~G 733 (766)
++.+||+|||+++..........+|+.|+|||.+.... ++.++||||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG 246 (360)
T 3llt_A 176 EKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLG---------WDVSSDMWSFG 246 (360)
T ss_dssp CEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCC---------CCTTHHHHHHH
T ss_pred cccccchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCC---------CCCccchHHHH
Confidence 78999999999987766666678899999999886544 47899999999
Q ss_pred HHHHHHhcCCCCCCCC
Q 004248 734 NPLFSAIFNNHLNLSS 749 (766)
Q Consensus 734 vvl~elltG~~p~~~~ 749 (766)
|++|||+||+.||...
T Consensus 247 ~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 247 CVLAELYTGSLLFRTH 262 (360)
T ss_dssp HHHHHHHHSSCSCCCS
T ss_pred HHHHHHHHCCCCCCCC
Confidence 9999999999999543
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.01 Aligned_cols=210 Identities=28% Similarity=0.447 Sum_probs=179.8
Q ss_pred ccccHHHHHHHhCCCCcc------ceeecCCcceEEEEEEcCCcEEEEEEeecccc-----CHHHHHHHHHHHhhcCCCC
Q 004248 522 ESFTYQQLLAATGDFSDA------NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKVSHAR 590 (766)
Q Consensus 522 ~~~~~~~l~~~~~~~~~~------~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l~H~n 590 (766)
..|+++++.+++++|+.. +.||+|+||.||+|.. +++.||||++..... ..+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999887 8999999999999986 578999999865321 1567999999999999999
Q ss_pred cccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCC
Q 004248 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASS 670 (766)
Q Consensus 591 iv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~N 670 (766)
|+++++++.. ++..++||||+++|+|.+++..... ...++|..+..++.|++.||+|||+. +|+||||||+|
T Consensus 92 i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~N 163 (307)
T 2nru_A 92 LVELLGFSSD-GDDLCLVYVYMPNGSLLDRLSCLDG----TPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSAN 163 (307)
T ss_dssp BCCEEEEECS-SSSCEEEEECCTTCBHHHHHHTGGG----CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGG
T ss_pred eEEEEEEEec-CCceEEEEEecCCCcHHHHHHhccC----CCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHH
Confidence 9999998765 5679999999999999999975321 13589999999999999999999998 99999999999
Q ss_pred eeeCCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCC
Q 004248 671 ILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745 (766)
Q Consensus 671 ILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p 745 (766)
|++++++.+||+|||+++..... .....+|..|+|||...+ . ++.++|||||||++|||+||+.|
T Consensus 164 ili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~---------~~~~~Dv~slG~il~~l~~g~~p 233 (307)
T 2nru_A 164 ILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-E---------ITPKSDIYSFGVVLLEIITGLPA 233 (307)
T ss_dssp EEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-E---------ECTHHHHHHHHHHHHHHHHCCCS
T ss_pred EEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-C---------CCccchhHHHHHHHHHHHHCCCC
Confidence 99999999999999999765332 223467899999997642 1 47899999999999999999999
Q ss_pred CCCCc
Q 004248 746 NLSSR 750 (766)
Q Consensus 746 ~~~~~ 750 (766)
|....
T Consensus 234 ~~~~~ 238 (307)
T 2nru_A 234 VDEHR 238 (307)
T ss_dssp BCTTB
T ss_pred cccCc
Confidence 96543
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=332.15 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=159.3
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcC-CCCcccceeEEEecC-CcE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVS-HARLVPLLGHCMERE-NEK 605 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~-~~~ 605 (766)
..++|+..+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|+.++++++ |||||++++++...+ ...
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 457899999999999999999984 6799999999964322 2557889999999997 999999999876432 368
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+|||||+ |+|.+++... .+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 87 ~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG 154 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN--------ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFG 154 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEecccC-cCHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCc
Confidence 99999998 6999998753 389999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCC------------------------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 686 EVCAQGG------------------------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 686 ~a~~~~~------------------------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
+|+.... .....++|++|+|||.+..... ++.++||||+||++|||+|
T Consensus 155 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwSlG~il~ell~ 226 (388)
T 3oz6_A 155 LSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTK--------YTKGIDMWSLGCILGEILC 226 (388)
T ss_dssp TCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCC--------CCTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCC--------CCChhhHHHHHHHHHHHHh
Confidence 9975421 1233578999999998764321 5789999999999999999
Q ss_pred CCCCCCCC
Q 004248 742 NNHLNLSS 749 (766)
Q Consensus 742 G~~p~~~~ 749 (766)
|+.||...
T Consensus 227 g~~pf~~~ 234 (388)
T 3oz6_A 227 GKPIFPGS 234 (388)
T ss_dssp SSCSCCCS
T ss_pred CCCCCCCC
Confidence 99999543
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=343.54 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=162.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..++||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++|||||++++++.. ++..|+
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-~~~~~l 225 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-HDRLCF 225 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-TTEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-CCEEEE
Confidence 35688999999999999999994 6799999999975422 24568899999999999999999998876 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
|||||++|+|.+++.+.+ .+++..+..++.|++.||+|||+ . +||||||||+|||++.++.+||+|||+
T Consensus 226 v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~ 295 (446)
T 4ejn_A 226 VMEYANGGELFFHLSRER-------VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGL 295 (446)
T ss_dssp EECCCSSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCC
T ss_pred EEeeCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCC
Confidence 999999999999997654 38999999999999999999997 6 899999999999999999999999999
Q ss_pred hhhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+... ......+||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 296 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~Pf~~~ 352 (446)
T 4ejn_A 296 CKEGIKDGATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQ 352 (446)
T ss_dssp CCTTCC-----CCSSSCGGGCCHHHHHTSC---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceeccCCCcccccccCCccccCHhhcCCCC---------CCCccchhhhHHHHHHHhhCCCCCCCC
Confidence 98642 2234567899999999876544 478999999999999999999999544
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=331.22 Aligned_cols=203 Identities=20% Similarity=0.272 Sum_probs=169.1
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|...+.||+|+||.||+|+.. +++.||||+++..... ..++.+|+.++++++|||||++++++.. ++..
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-~~~~ 149 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ-SLPR 149 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSC
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEec-CCCC
Confidence 46888999999999999999842 4678999999653322 4579999999999999999999998765 5678
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC---cEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF---EVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl~ 682 (766)
++|||||++|+|.+++...+........+++.+++.++.||++||+|||+. +|+||||||+|||++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEEC
Confidence 999999999999999986543323334699999999999999999999998 999999999999999555 59999
Q ss_pred cchhhhhcC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 683 SLSEVCAQG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|||+++... .......+|..|+|||.+.... ++.++|||||||++|||+| |+.||...
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DvwslG~il~ellt~g~~pf~~~ 290 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGI---------FTSKTDTWSFGVLLWEIFSLGYMPYPSK 290 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999997541 2233456788999999875443 5789999999999999998 99998543
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=330.10 Aligned_cols=198 Identities=15% Similarity=0.188 Sum_probs=170.6
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++|+..+.||+|+||.||+|.. .+|+.||+|.+..... ....+.+|+++|++++|||||++++++.+ ++..++|||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~~~lv~E 128 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-KYEMVLILE 128 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-SSEEEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-CCEEEEEEE
Confidence 35788999999999999999995 5789999999975433 25578999999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC--CCcEEeccchhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD--KFEVRLGSLSEVC 688 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~--~~~~kl~DFG~a~ 688 (766)
||++|+|.+++.... ..+++.++..++.||+.||+|||+. +|+||||||+|||++. ++.+||+|||+++
T Consensus 129 ~~~gg~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~ 199 (387)
T 1kob_A 129 FLSGGELFDRIAAED------YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLAT 199 (387)
T ss_dssp CCCCCBHHHHTTCTT------CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCE
T ss_pred cCCCCcHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccce
Confidence 999999999997543 2489999999999999999999998 9999999999999984 5789999999998
Q ss_pred hcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 200 ~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il~elltg~~Pf~~~ 253 (387)
T 1kob_A 200 KLNPDEIVKVTTATAEFAAPEIVDREP---------VGFYTDMWAIGVLGYVLLSGLSPFAGE 253 (387)
T ss_dssp ECCTTSCEEEECSSGGGCCHHHHTTCC---------BCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred ecCCCcceeeeccCCCccCchhccCCC---------CCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence 76433 23456899999999876544 467999999999999999999999643
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=313.59 Aligned_cols=197 Identities=20% Similarity=0.288 Sum_probs=171.5
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|...++..||||++.......+++.+|++++++++||||+++++++.. ++..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~ 86 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-EYPIYIVTEYIS 86 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSEEEEEECCT
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-CCceEEEEEccC
Confidence 5688899999999999999998888899999998776667889999999999999999999997755 567999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~ 157 (268)
T 3sxs_A 87 NGCLLNYLRSHG------KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD 157 (268)
T ss_dssp TCBHHHHHHHHG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTT
T ss_pred CCcHHHHHHHcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchh
Confidence 999999997643 2489999999999999999999998 9999999999999999999999999999865332
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
. ....+|..|+|||...... ++.++||||+||++|||+| |+.||...
T Consensus 158 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 209 (268)
T 3sxs_A 158 QYVSSVGTKFPVKWSAPEVFHYFK---------YSSKSDVWAFGILMWEVFSLGKMPYDLY 209 (268)
T ss_dssp CEEECCSCCCCGGGCCHHHHHHSE---------EETTHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred hhhcccCCCcCcccCCHHHHhccC---------CchhhhhHHHHHHHHHHHcCCCCCcccc
Confidence 2 2234466799999875433 4789999999999999999 99998543
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=330.05 Aligned_cols=201 Identities=21% Similarity=0.210 Sum_probs=171.4
Q ss_pred CCCCccceeecC--CcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNG--HSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G--~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..++||+| +||.||+|+. .+|+.||||++...... .+.+.+|++++++++|||||++++++.+ ++..|+
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~l 103 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIA-DNELWV 103 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEE
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEE-CCEEEE
Confidence 568899999999 9999999995 47999999999765433 4578889999999999999999998876 578999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|||||++|+|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||.+
T Consensus 104 v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~ 175 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFM-----DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSN 175 (389)
T ss_dssp EEECCTTCBHHHHHHHTCT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGC
T ss_pred EEEccCCCCHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccc
Confidence 9999999999999976532 2489999999999999999999998 9999999999999999999999999987
Q ss_pred hhcC----------CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 688 CAQG----------GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 688 ~~~~----------~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
.... .......+|..|+|||.+...... ++.++|||||||++|||+||+.||....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-------~~~~~DiwslG~il~el~~g~~pf~~~~ 241 (389)
T 3gni_B 176 LSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQG-------YDAKSDIYSVGITACELANGHVPFKDMP 241 (389)
T ss_dssp EECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSC-------BCTHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred eeeccccccccccccccccccccccccCHHHHhccCCC-------CCcHhHHHHHHHHHHHHHHCCCCCCCCC
Confidence 5431 112234678899999987653222 5789999999999999999999996543
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=330.25 Aligned_cols=194 Identities=16% Similarity=0.215 Sum_probs=162.2
Q ss_pred CccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 537 SDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
...++||+|+||.||+|.. .+|+.||||+++.... ..+++.+|++++++++|||||++++++.. .+..++||||+++
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-~~~~~lv~E~~~~ 170 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFES-KNDIVLVMEYVDG 170 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEEEECCTT
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-CCEEEEEEeCCCC
Confidence 3457899999999999985 5799999999976543 35689999999999999999999998765 5689999999999
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee--CCCCcEEeccchhhhhcCC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL--DDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl--~~~~~~kl~DFG~a~~~~~ 692 (766)
|+|.+++.... ..+++.++..++.||++||+|||+. +|+||||||+|||+ +.++.+||+|||+++....
T Consensus 171 ~~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~ 241 (373)
T 2x4f_A 171 GELFDRIIDES------YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP 241 (373)
T ss_dssp CEEHHHHHHTG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT
T ss_pred CcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCC
Confidence 99999987543 2489999999999999999999998 99999999999999 6778999999999987643
Q ss_pred C--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 D--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....+|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 242 ~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~elltg~~pf~~~ 291 (373)
T 2x4f_A 242 REKLKVNFGTPEFLAPEVVNYDF---------VSFPTDMWSVGVIAYMLLSGLSPFLGD 291 (373)
T ss_dssp TCBCCCCCSSCTTCCHHHHTTCB---------CCHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ccccccccCCCcEeChhhccCCC---------CCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence 2 33456899999999875443 478999999999999999999999543
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=327.55 Aligned_cols=197 Identities=14% Similarity=0.146 Sum_probs=155.9
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|++++++++|||||++++++.. .+..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPNIIKLKEIFET-PTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTTBCCEEEEEEC-SSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCCCcceeeeEec-CCeEEEEEEe
Confidence 457888999999999999999964 68899999997543 34678899999999999999999998865 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEeccchhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLGSLSEVC 688 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~DFG~a~ 688 (766)
+++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+|||++. ++.+||+|||+++
T Consensus 130 ~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~ 199 (349)
T 2w4o_A 130 VTGGELFDRIVEKG-------YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSK 199 (349)
T ss_dssp CCSCBHHHHHTTCS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC---
T ss_pred CCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCcccc
Confidence 99999999997543 389999999999999999999998 9999999999999975 8999999999998
Q ss_pred hcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
..... .....+|+.|+|||...... ++.++|||||||++|||+||+.||....
T Consensus 200 ~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~pf~~~~ 254 (349)
T 2w4o_A 200 IVEHQVLMKTVCGTPGYCAPEILRGCA---------YGPEVDMWSVGIITYILLCGFEPFYDER 254 (349)
T ss_dssp -------------CGGGSCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred ccCcccccccccCCCCccCHHHhcCCC---------CCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence 76332 34457899999999876543 4789999999999999999999996443
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=340.11 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=150.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec----CCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER----ENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~----~~~~ 605 (766)
++|+..++||+|+||.||+|+. .+|+.||||++...... .+++.+|+++|++++|||||++++++... .+..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 6789999999999999999984 57899999999653322 46799999999999999999999987532 2468
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||+. |+|.+++.... .+++..+..++.||+.||+|||+. +||||||||+|||++.++++||+|||
T Consensus 133 ~lv~e~~~-~~L~~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFG 201 (458)
T 3rp9_A 133 YVVLEIAD-SDFKKLFRTPV-------YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFG 201 (458)
T ss_dssp EEEECCCS-EEHHHHHHSSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEeccc-cchhhhcccCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccc
Confidence 99999985 79999997543 399999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCC------------------------------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHH
Q 004248 686 EVCAQGG------------------------------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNP 735 (766)
Q Consensus 686 ~a~~~~~------------------------------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvv 735 (766)
+|+.... .....+||++|+|||.+..... ++.++|||||||+
T Consensus 202 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~--------~~~~~DiwSlG~i 273 (458)
T 3rp9_A 202 LARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQEN--------YTEAIDVWSIGCI 273 (458)
T ss_dssp TCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCC--------CCTHHHHHHHHHH
T ss_pred cchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCC--------CCcHhHHHHHHHH
Confidence 9986531 1234577999999997643321 5789999999999
Q ss_pred HHHHhcC
Q 004248 736 LFSAIFN 742 (766)
Q Consensus 736 l~elltG 742 (766)
+|||+||
T Consensus 274 l~elltg 280 (458)
T 3rp9_A 274 FAELLNM 280 (458)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999994
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=336.20 Aligned_cols=195 Identities=15% Similarity=0.213 Sum_probs=163.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC----Cc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE----NE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~ 604 (766)
.++|...+.||+|+||.||+|+. .+|+.||||++...... .+++.+|++++++++|||||++++++.... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 36799999999999999999995 56899999999754322 467999999999999999999999876532 46
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+||||++ |+|.+++.... .+++..+..++.||++||+|||+. +|+||||||+|||++.++.+||+||
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~-------~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DF 173 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI-------FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDF 173 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred EEEEEecCC-cCHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccC
Confidence 899999997 59999997543 389999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcCCC-------------------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHH
Q 004248 685 SEVCAQGGD-------------------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739 (766)
Q Consensus 685 G~a~~~~~~-------------------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~el 739 (766)
|+|+..... ....++|++|+|||.+..... ++.++||||+||++|||
T Consensus 174 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~--------~~~~~DiwSlG~il~el 245 (432)
T 3n9x_A 174 GLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQEN--------YTKSIDIWSTGCIFAEL 245 (432)
T ss_dssp TTCEEC-------------------------------CCCCCTTCCHHHHTTCSC--------CCTHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCC--------CCcccccchHHHHHHHH
Confidence 999865321 245678999999997643322 57899999999999999
Q ss_pred hcCCCCC
Q 004248 740 IFNNHLN 746 (766)
Q Consensus 740 ltG~~p~ 746 (766)
+||..||
T Consensus 246 l~g~~p~ 252 (432)
T 3n9x_A 246 LNMLQSH 252 (432)
T ss_dssp HTTCTTT
T ss_pred Hhccccc
Confidence 9865554
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=333.65 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=162.5
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---------HHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---------TEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---------~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
..++|...+.||+|+||.||+|.. .+++.||||++...... ...+.+|+++|++++|||||++++++.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-- 210 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-- 210 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE--
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence 457899999999999999999985 56899999999754321 225889999999999999999999764
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---Cc
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FE 678 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~ 678 (766)
.+..|+|||||++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+|||++.+ +.
T Consensus 211 ~~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~ 280 (419)
T 3i6u_A 211 AEDYYIVLELMEGGELFDKVVGNK-------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCL 280 (419)
T ss_dssp SSEEEEEEECCTTCBGGGGTSSSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCC
T ss_pred cCceEEEEEcCCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcce
Confidence 356899999999999999987543 389999999999999999999998 99999999999999754 45
Q ss_pred EEeccchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 679 VRLGSLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+||+|||+++..+.. .....||+.|+|||.+.....+. ++.++|||||||++|||+||+.||...
T Consensus 281 ~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~------~~~~~DiwslG~il~~lltg~~pf~~~ 347 (419)
T 3i6u_A 281 IKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAG------YNRAVDCWSLGVILFICLSGYPPFSEH 347 (419)
T ss_dssp EEECCSSTTTSCC-----------CTTCCTTTTC----CT------THHHHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred EEEeecccceecCCCccccccCCCCCccCceeeecCCCCC------CCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence 999999999876433 34567899999999875422111 578999999999999999999999643
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.04 Aligned_cols=198 Identities=16% Similarity=0.289 Sum_probs=171.8
Q ss_pred HhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
..++|+..+.||+|+||.||+|...++..||||+++......++|.+|+++|++++|||||++++++. ++..|+||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~--~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT--KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe--CCccEEEEee
Confidence 34568888999999999999999988899999999876666789999999999999999999999775 4578999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|++|+|.++++.... ..+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+++...
T Consensus 264 ~~~g~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~ 335 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEG-----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIE 335 (454)
T ss_dssp CTTCBHHHHHHSHHH-----HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred cCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence 999999999975421 2488999999999999999999998 99999999999999999999999999998763
Q ss_pred CC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 692 GD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 692 ~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.. .....++..|+|||.+.... ++.++|||||||++|||+| |+.||..
T Consensus 336 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~~l~el~t~g~~P~~~ 388 (454)
T 1qcf_A 336 DNEYTAREGAKFPIKWTAPEAINFGS---------FTIKSDVWSFGILLMEIVTYGRIPYPG 388 (454)
T ss_dssp CHHHHTTCSSSSCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CCceeccCCCcccccccCHHHhccCC---------CCcHHHHHhHHHHHHHHHhCCCCCCCC
Confidence 22 12234567899999875433 5789999999999999999 9999954
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=330.68 Aligned_cols=197 Identities=20% Similarity=0.333 Sum_probs=157.9
Q ss_pred CCCCccceeecCCcceEEEEEEc----CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|+.. ++..||||+++.... ..++|.+|++++++++|||||++++++.+ ++..++
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~l 123 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK-SKPVMI 123 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSSCEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-CCceEE
Confidence 46888999999999999999854 577899999975432 25679999999999999999999998765 567999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++++.. ..+++.++..++.||++||+|||+. +|+||||||+|||++.++.+||+|||++
T Consensus 124 v~e~~~~~sL~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 194 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHD------AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLG 194 (373)
T ss_dssp EEECCTTCBHHHHHHTTT------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC---
T ss_pred EEeCCCCCcHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccc
Confidence 999999999999997543 2489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+...... ....++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~SlG~il~ellt~g~~P~~~~ 254 (373)
T 2qol_A 195 RVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK---------FTSASDVWSYGIVLWEVMSYGERPYWEM 254 (373)
T ss_dssp -------------------CTTSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred cccccCCccceeccCCCcCCCccChhhhccCC---------cCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence 8763321 1123456799999875443 5789999999999999998 99999543
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=337.72 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=161.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-----C
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-----N 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~ 603 (766)
.++|+..+.||+|+||.||+|+. .+|+.||||++...... .+++.+|++++++++|||||++++++.... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 46799999999999999999984 57899999999754322 567899999999999999999999875422 3
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+|||||++ +|.+.+.. .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~D 207 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILD 207 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred eEEEEEeCCCC-CHHHHHhh---------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEE
Confidence 57999999986 57776642 289999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+|+..+. .....++|+.|+|||.+.+.. ++.++||||+||++|||++|+.||...
T Consensus 208 FG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il~ell~g~~pF~g~ 266 (464)
T 3ttj_A 208 FGLARTAGTSFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGEMVRHKILFPGR 266 (464)
T ss_dssp CCCC-----CCCC----CCCTTCCHHHHTTCC---------CCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred EEeeeecCCCcccCCCcccccccCHHHHcCCC---------CCHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999987643 245568999999999886543 478999999999999999999999543
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.35 Aligned_cols=200 Identities=20% Similarity=0.239 Sum_probs=167.6
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc------CHHHHHHHHHHHhhcC---CCCcccceeEEEec
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV------KTEAYLLELDFFSKVS---HARLVPLLGHCMER 601 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~------~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~ 601 (766)
..++|+..+.||+|+||.||+|+. .+|+.||||++..... ....+.+|++++++++ ||||++++++|...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 356899999999999999999994 6799999999964321 1356788888887775 99999999988763
Q ss_pred CC----cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 602 EN----EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 602 ~~----~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
.. ..++||||++ |+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~ 157 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP-----PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGG 157 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTS
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCC
Confidence 32 4799999998 599999976543 3489999999999999999999998 899999999999999999
Q ss_pred cEEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+||+|||+++.... ......+|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 158 ~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~~l~~g~~pf~~~ 222 (308)
T 3g33_A 158 TVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQST---------YATPVDMWSVGCIFAEMFRRKPLFCGN 222 (308)
T ss_dssp CEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSC---------CCSTHHHHHHHHHHHHTTTSSCSCCCS
T ss_pred CEEEeeCccccccCCCcccCCccccccccCchHHcCCC---------CCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999987642 334567899999999876544 478999999999999999999999543
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=318.94 Aligned_cols=200 Identities=19% Similarity=0.308 Sum_probs=164.0
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhh--cCCCCcccceeEEEec---CCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSK--VSHARLVPLLGHCMER---ENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~---~~~~~l 607 (766)
.++|+..+.||+|+||.||+|+. +|+.||||++... ..+.+.+|.+++.. ++||||+++++++... ....++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l 83 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR--DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG--GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc--cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence 35788999999999999999987 6889999998654 34566777777776 7999999999987542 235899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhc--------cCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH--------HECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
||||+++|+|.++++.. .+++..+..++.|++.||+||| +. +|+||||||+|||++.++.+
T Consensus 84 v~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~ 152 (301)
T 3q4u_A 84 ITHYHEMGSLYDYLQLT--------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQC 152 (301)
T ss_dssp EECCCTTCBHHHHHTTC--------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCE
T ss_pred ehhhccCCCHHHHHhhc--------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCE
Confidence 99999999999999532 3899999999999999999999 65 99999999999999999999
Q ss_pred EeccchhhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcC----------
Q 004248 680 RLGSLSEVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN---------- 742 (766)
Q Consensus 680 kl~DFG~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG---------- 742 (766)
||+|||+++..... .....+|+.|+|||......... ...+++++|||||||++|||+||
T Consensus 153 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~ 229 (301)
T 3q4u_A 153 CIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVD---CFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDY 229 (301)
T ss_dssp EECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTT---CHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred EEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCC---cccCCchhhHHHHHHHHHHHHhhhcCccccccc
Confidence 99999999765322 12337899999999876542110 00156899999999999999999
Q ss_pred CCCCCCC
Q 004248 743 NHLNLSS 749 (766)
Q Consensus 743 ~~p~~~~ 749 (766)
+.||...
T Consensus 230 ~~pf~~~ 236 (301)
T 3q4u_A 230 KPPFYDV 236 (301)
T ss_dssp CCTTTTT
T ss_pred ccccccc
Confidence 8888543
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=322.99 Aligned_cols=197 Identities=19% Similarity=0.342 Sum_probs=164.8
Q ss_pred CCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|...+.||+|+||.||+|... .+..||||+++..... .++|.+|++++++++|||||++++++.+ ++..|+
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~l 127 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTR-GRLAMI 127 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECG-GGCCEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-CCccEE
Confidence 45778899999999999999963 3456999999754322 5679999999999999999999998765 567899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.++++.... .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||++
T Consensus 128 v~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 198 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDG------QFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLS 198 (325)
T ss_dssp EEECCTTCBHHHHHHTTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSC
T ss_pred EeeCCCCCcHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcc
Confidence 9999999999999975432 489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+...... ....+|..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 199 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~ell~~g~~p~~~~ 258 (325)
T 3kul_A 199 RVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRT---------FSSASDVWSFGVVMWEVLAYGERPYWNM 258 (325)
T ss_dssp EECC----CCEECC---CCGGGSCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred cccccCccceeeccCCCCcccccCHhHhcCCC---------CCcHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 8763321 1223466799999875433 5789999999999999999 99999543
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.77 Aligned_cols=199 Identities=13% Similarity=0.171 Sum_probs=164.4
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCC---c
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMEREN---E 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~---~ 604 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++...... .+++.+|++++++++|||||++++++..... .
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 35788999999999999999994 67999999999764332 3578999999999999999999998765322 2
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+||||+++|+|.++++..+ .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 160 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-------PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDF 160 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCC
T ss_pred cEEEEecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeec
Confidence 499999999999999997653 389999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 685 SEVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 685 G~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|+++..... .....||..|+|||...... ++.++|||||||++|||+||+.||....
T Consensus 161 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~ll~g~~pf~~~~ 223 (311)
T 3ork_A 161 GIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDS---------VDARSDVYSLGCVLYEVLTGEPPFTGDS 223 (311)
T ss_dssp SCC------------------CCTTCCHHHHHTCC---------CCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred cCcccccccccccccccccCcCcccCCHHHhcCCC---------CCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 999765322 22345799999999876543 4789999999999999999999996443
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=315.73 Aligned_cols=198 Identities=21% Similarity=0.288 Sum_probs=169.7
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++|+..+.||+|+||.||+|...++..||||++.......+++.+|++++++++||||+++++++.+ ++..++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-QRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEec-CCCeEEEEecc
Confidence 35688899999999999999999889999999998776667889999999999999999999997765 56799999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 172 (283)
T 3gen_A 102 ANGCLLNYLREMR------HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172 (283)
T ss_dssp TTCBHHHHHHCGG------GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred CCCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccc
Confidence 9999999997533 2489999999999999999999998 999999999999999999999999999986532
Q ss_pred C----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 693 D----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 693 ~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
. .....+|..|+|||...... ++.++||||+||++|||+| |+.||...
T Consensus 173 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~~l~~l~t~g~~p~~~~ 225 (283)
T 3gen_A 173 DEYTSSVGSKFPVRWSPPEVLMYSK---------FSSKSDIWAFGVLMWEIYSLGKMPYERF 225 (283)
T ss_dssp HHHHSTTSTTSCGGGCCHHHHHHCC---------CSHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred cccccccCCccCcccCCHHHhccCC---------CCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 1 22334567899999875443 4789999999999999999 99999543
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=330.46 Aligned_cols=215 Identities=17% Similarity=0.212 Sum_probs=176.0
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccc
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPL 594 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l 594 (766)
+...++....++|+..+.||+|+||.||+|+. .+++.||||+++..... .+.+.+|+++++++ +|||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 44555556678899999999999999999973 34689999999754332 45799999999999 79999999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhhhhccCCCC----------------------------------------------
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTE---------------------------------------------- 628 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~---------------------------------------------- 628 (766)
+++|.+.+...++|||||++|+|.++++......
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 9988765556899999999999999997643210
Q ss_pred -------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC--
Q 004248 629 -------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD-- 693 (766)
Q Consensus 629 -------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~-- 693 (766)
.....+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 0012289999999999999999999998 9999999999999999999999999999865322
Q ss_pred ---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 694 ---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 694 ---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
.....+|..|+|||...... ++.++|||||||++|||+| |+.||....
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~~~~ 300 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRV---------YTIQSDVWSFGVLLWEIFSLGASPYPGVK 300 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred chhccccCCCceeEChhhhcCCC---------CCchhhhhhHHHHHHHHHhcCCCCCCccc
Confidence 22346788899999875433 5789999999999999999 999996443
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=312.65 Aligned_cols=198 Identities=19% Similarity=0.279 Sum_probs=169.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--------HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--------TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
++|+..+.||+|+||.||+|+. .+++.||||++...... .+++.+|++++++++||||+++++++.+ .
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~ 95 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN---P 95 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---T
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---C
Confidence 5688899999999999999995 57899999998653322 1679999999999999999999997643 3
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC--eEecCCCCCCeeeCCCCc----
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP--FVHRDVQASSILLDDKFE---- 678 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--iiHrDlKp~NILl~~~~~---- 678 (766)
.++||||+++|+|.+++.+.. ..+++..+..++.|++.||+|||+. + |+||||||+||+++.++.
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~ 166 (287)
T 4f0f_A 96 PRMVMEFVPCGDLYHRLLDKA------HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPV 166 (287)
T ss_dssp TEEEEECCTTCBHHHHHHCTT------SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSC
T ss_pred CeEEEEecCCCCHHHHHhccc------CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCce
Confidence 489999999999999887543 2489999999999999999999997 6 999999999999988876
Q ss_pred -EEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 679 -VRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 679 -~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+||+|||+++..........+|..|+|||.+...... ++.++||||+||++|||+||+.||....
T Consensus 167 ~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~-------~~~~~Di~slG~~l~~l~~g~~pf~~~~ 232 (287)
T 4f0f_A 167 CAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEES-------YTEKADTYSFAMILYTILTGEGPFDEYS 232 (287)
T ss_dssp CEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCE-------ECHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred eEEeCCCCccccccccccccCCCccccCchhhccCCCC-------cCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence 9999999998766555666789999999987433221 5789999999999999999999996543
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=322.99 Aligned_cols=195 Identities=15% Similarity=0.074 Sum_probs=168.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||.||+|+. .+|+.||||.+..... .+++.+|+++++++ +||||+++++++.. ++..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-~~~~~lv~e~ 86 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-APQLHLEYRFYKQLGSGDGIPQVYYFGPC-GKYNAMVLEL 86 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-SCCHHHHHHHHHHHCSCTTSCCEEEEEEE-TTEEEEEEEC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHhhCCCCCCEEEEEEec-CCccEEEEEe
Confidence 5788899999999999999994 6799999999875432 34688999999999 99999999997766 5688999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc-----EEeccchh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE-----VRLGSLSE 686 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~-----~kl~DFG~ 686 (766)
+ +|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.++. +||+|||+
T Consensus 87 ~-~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~ 156 (330)
T 2izr_A 87 L-GPSLEDLFDLCD------RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFAL 156 (330)
T ss_dssp C-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTT
T ss_pred C-CCCHHHHHHHcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEccc
Confidence 9 899999997642 2499999999999999999999998 9999999999999999887 99999999
Q ss_pred hhhcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++..... .....||..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 157 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~ell~g~~Pf~~~ 220 (330)
T 2izr_A 157 AKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKE---------QSRRDDLEALGHMFMYFLRGSLPWQGL 220 (330)
T ss_dssp CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred ceeeecCCCCccccccccCCcCCCccccChHHHcCCC---------CCchhHHHHHHHHHHHHhcCCCCcccc
Confidence 9865322 13457899999999876544 478999999999999999999999653
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=324.19 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=168.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+.|+..+.||+|+||.||+|+. .+|+.||||++...... .+++.+|++++++++|||||++++++.. ++..++|
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv 132 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-EHTAWLV 132 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-CCeEEEE
Confidence 3488889999999999999995 67999999999754322 3578999999999999999999998776 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||++ |+|.+++.... ..+++.++..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 133 ~e~~~-g~l~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~ 202 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVHK------KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSAS 202 (348)
T ss_dssp EECCS-EEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCB
T ss_pred EecCC-CCHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCce
Confidence 99998 68888886433 2489999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....+|+.|+|||.+.....+. ++.++|||||||++|||+||+.||...
T Consensus 203 ~~~~-~~~~~gt~~y~aPE~~~~~~~~~------~~~~~DiwslG~il~ell~g~~p~~~~ 256 (348)
T 1u5q_A 203 IMAP-ANSFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFNM 256 (348)
T ss_dssp SSSS-BCCCCSCGGGCCHHHHHTTSSCC------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred ecCC-CCcccCCcceeCHhhhccccCCC------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 6643 33457899999999874322121 578999999999999999999999543
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=332.02 Aligned_cols=196 Identities=20% Similarity=0.312 Sum_probs=167.2
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...+.||+|+||.||+|+.. +++.||||.++..... .++|.+|+++|++++|||||+++++|.. ++..|+|||
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv~e 192 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ-KQPIYIVME 192 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECS-SSSCEEEEE
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEec-CCCcEEEEE
Confidence 46788899999999999999965 7899999998754322 3468999999999999999999998865 567999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||++|+|.++++..+ ..+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+||+|||+++..
T Consensus 193 ~~~~g~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~ 263 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEG------ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREE 263 (377)
T ss_dssp CCTTCBHHHHHHHHG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred cCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceec
Confidence 999999999997543 2489999999999999999999998 9999999999999999999999999999865
Q ss_pred CCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 691 GGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 691 ~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.... ....++..|+|||....+. ++.++|||||||++|||+| |+.||..
T Consensus 264 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwslG~il~el~t~g~~p~~~ 318 (377)
T 3cbl_A 264 ADGVYAASGGLRQVPVKWTAPEALNYGR---------YSSESDVWSFGILLWETFSLGASPYPN 318 (377)
T ss_dssp TTSEEECCSSCCEEEGGGSCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CCCceeecCCCCCCCcCcCCHhHhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 3221 1223567799999875433 5789999999999999999 9999854
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=329.70 Aligned_cols=195 Identities=13% Similarity=0.167 Sum_probs=158.2
Q ss_pred CCCCcc-ceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhh-cCCCCcccceeEEEe---cCCcEEE
Q 004248 534 GDFSDA-NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSK-VSHARLVPLLGHCME---RENEKFL 607 (766)
Q Consensus 534 ~~~~~~-~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~-l~H~niv~l~~~~~~---~~~~~~l 607 (766)
++|... ++||+|+||+||+|.. .+|+.||||+++. ...+.+|++++.+ .+|||||++++++.. .++..|+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~l 136 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 136 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEE
Confidence 456655 6899999999999995 5789999999863 3467889998754 589999999997653 1346899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEeccc
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLGSL 684 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~DF 684 (766)
|||||++|+|.+++..... ..+++.++..|+.||+.||+|||+. +||||||||+|||++. ++.+||+||
T Consensus 137 v~E~~~gg~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DF 208 (400)
T 1nxk_A 137 VMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDF 208 (400)
T ss_dssp EEECCCSEEHHHHHHCC--------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCC
T ss_pred EEEeCCCCcHHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEec
Confidence 9999999999999976432 3489999999999999999999997 9999999999999997 789999999
Q ss_pred hhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 685 SEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+++.... .....++|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 209 G~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~pf~~~ 266 (400)
T 1nxk_A 209 GFAKETTSHNSLTTPCYTPYYVAPEVLGPEK---------YDKSCDMWSLGVIMYILLCGYPPFYSN 266 (400)
T ss_dssp TTCEECC-----------CTTCCGGGSCCCC---------SSSHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred ccccccCCCCccccCCCCCCccCHhhcCCCC---------CCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence 99986532 234567899999999885543 578999999999999999999999543
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=349.88 Aligned_cols=198 Identities=14% Similarity=0.135 Sum_probs=171.3
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEK 605 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 605 (766)
..++|+..++||+|+||.||+|+. .+++.||||+++... ...+.+.+|.+++..+ +||||+++++++.+ .+..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~-~~~~ 417 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-MDRL 417 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC-SSEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe-CCEE
Confidence 456899999999999999999995 568899999997542 2356788999999988 79999999986544 6789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||+++|+|.+++.+.+. +++.++..|+.||+.||+|||+. +||||||||+|||++.++++||+|||
T Consensus 418 ~lV~E~~~gg~L~~~l~~~~~-------~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFG 487 (674)
T 3pfq_A 418 YFVMEYVNGGDLMYHIQQVGR-------FKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFG 487 (674)
T ss_dssp EEEEECCCSCBHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCT
T ss_pred EEEEeCcCCCcHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecc
Confidence 999999999999999986543 89999999999999999999998 99999999999999999999999999
Q ss_pred hhhhc---CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQ---GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~---~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|+.. +......+||+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 488 la~~~~~~~~~~~~~~GT~~Y~APE~l~~~~---------~~~~~DvwSlGvilyelltG~~Pf~~~ 545 (674)
T 3pfq_A 488 MCKENIWDGVTTKTFCGTPDYIAPEIIAYQP---------YGKSVDWWAFGVLLYEMLAGQAPFEGE 545 (674)
T ss_dssp TCEECCCTTCCBCCCCSCSSSCCHHHHTCCC---------BSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eeeccccCCcccccccCCCcccCHhhhcCCC---------CCccceEechHHHHHHHHcCCCCCCCC
Confidence 99864 22345567999999999886544 478999999999999999999999643
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=317.89 Aligned_cols=189 Identities=15% Similarity=0.162 Sum_probs=147.9
Q ss_pred cceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 539 ANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
.++||+|+||.||+|+. .+++.||||++... ....+.+|++++++++ |||||++++++.+ ++..|+||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR--MEANTQKEITALKLCEGHPNIVKLHEVFHD-QLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG--GHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh--hhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-CCEEEEEEEccCCCc
Confidence 47899999999999995 56899999999643 3467889999999997 9999999998765 568999999999999
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC---cEEeccchhhhhcCC-
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF---EVRLGSLSEVCAQGG- 692 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl~DFG~a~~~~~- 692 (766)
|.+++.+.+ .+++.++..++.|++.||+|||+. +|+||||||+|||++.++ .+||+|||+++....
T Consensus 93 L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 162 (325)
T 3kn6_A 93 LFERIKKKK-------HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD 162 (325)
T ss_dssp HHHHHHHCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence 999998654 389999999999999999999998 999999999999998765 899999999986532
Q ss_pred --CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 --DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 --~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
......+|..|+|||...... ++.++||||+||++|||+||+.||...
T Consensus 163 ~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 212 (325)
T 3kn6_A 163 NQPLKTPCFTLHYAAPELLNQNG---------YDESCDLWSLGVILYTMLSGQVPFQSH 212 (325)
T ss_dssp ---------------------CC---------CCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred CCcccccCCCcCccCHHHhcCCC---------CCCccchHHHHHHHHHHHhCCCCCCCC
Confidence 234456799999999876543 478999999999999999999999643
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=323.93 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=170.9
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---------CHHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---------KTEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
..++|+..+.||+|+||.||+|+ ..+++.||||++..... ..+.+.+|++++++++|||||++++++..
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~- 100 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN- 100 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC-
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee-
Confidence 34578999999999999999998 46789999999976432 23367889999999999999999998765
Q ss_pred CCcEEEEEeeCCCC-ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 602 ENEKFLVYKYMPNG-DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 602 ~~~~~lV~Ey~~~G-sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
++..++||||+.+| +|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+|
T Consensus 101 ~~~~~lv~e~~~~g~~l~~~~~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~k 170 (335)
T 3dls_A 101 QGFFQLVMEKHGSGLDLFAFIDRHP-------RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIK 170 (335)
T ss_dssp SSEEEEEEECCTTSCBHHHHHHTCC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEE
T ss_pred CCEEEEEEEeCCCCccHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEE
Confidence 56899999999877 9999997654 389999999999999999999998 999999999999999999999
Q ss_pred eccchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 681 LGSLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 681 l~DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+|||+++..... .....+|+.|+|||......+ .+.++|||||||++|||++|+.||..
T Consensus 171 L~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~pf~~ 232 (335)
T 3dls_A 171 LIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPY--------RGPELEMWSLGVTLYTLVFEENPFCE 232 (335)
T ss_dssp ECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCB--------CSHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred EeecccceECCCCCceeccCCCccccChhhhcCCCC--------CCCcccchhHHHHHHHHHhCCCchhh
Confidence 9999999876432 345568999999998765443 36899999999999999999999954
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=339.93 Aligned_cols=199 Identities=19% Similarity=0.346 Sum_probs=171.8
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|...+.||+|+||.||+|+.. ++..||||.++......++|.+|+++|++++|||||+++++|.. ++..|+||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEec-CCcEEEEEEc
Confidence 356788899999999999999965 48899999998766667889999999999999999999998865 5679999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|++|+|.++++.... ..+++..+..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+++...
T Consensus 298 ~~~g~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 369 (495)
T 1opk_A 298 MTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMT 369 (495)
T ss_dssp CTTCBHHHHHHHSCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred cCCCCHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceecc
Confidence 999999999976432 3489999999999999999999998 99999999999999999999999999998764
Q ss_pred CCC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 692 GDA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 692 ~~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
... ....++..|+|||.+.... ++.++|||||||++|||+| |+.||...
T Consensus 370 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~sDvwSlG~~l~el~t~g~~p~~~~ 423 (495)
T 1opk_A 370 GDTYTAHAGAKFPIKWTAPESLAYNK---------FSIKSDVWAFGVLLWEIATYGMSPYPGI 423 (495)
T ss_dssp TCCEECCTTCCCCGGGCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred CCceeecCCCcCCcceeCHhHHhcCC---------CCcHHhHHhHHHHHHHHHhCCCCCCCCC
Confidence 321 2234567899999875433 5789999999999999999 99998543
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=336.82 Aligned_cols=211 Identities=13% Similarity=0.141 Sum_probs=163.5
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHH---HHHhhcCCCCcccce-------eE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLEL---DFFSKVSHARLVPLL-------GH 597 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~---~~l~~l~H~niv~l~-------~~ 597 (766)
.++|...+.||+|+||.||+|+ ..+|+.||||++..... ..+.|.+|+ +++++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 3568888999999999999999 46799999999974322 256799999 556666899999998 54
Q ss_pred EEecCC----------------cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCe
Q 004248 598 CMEREN----------------EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPF 661 (766)
Q Consensus 598 ~~~~~~----------------~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i 661 (766)
+...+. ..|+||||+ +|+|.+++...+........++|..+..|+.||+.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 433211 279999999 5899999986432111123466789999999999999999998 99
Q ss_pred EecCCCCCCeeeCCCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCcee-e-eeeeeecccccceecchHHHHHH
Q 004248 662 VHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSG-M-VIYLFIIFTIFHIYFHGNPLFSA 739 (766)
Q Consensus 662 iHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g-~-~~~~~~~~~~~Dv~s~Gvvl~el 739 (766)
+||||||+|||++.++.+||+|||+++..+.......| +.|+|||.+.....+ + ......++.++|||||||++|||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~el 306 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWI 306 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHH
Confidence 99999999999999999999999999876555555667 899999987543000 0 00001168999999999999999
Q ss_pred hcCCCCCCC
Q 004248 740 IFNNHLNLS 748 (766)
Q Consensus 740 ltG~~p~~~ 748 (766)
+||+.||..
T Consensus 307 ltg~~Pf~~ 315 (377)
T 3byv_A 307 WCADLPITK 315 (377)
T ss_dssp HHSSCCC--
T ss_pred HHCCCCCcc
Confidence 999999954
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=311.43 Aligned_cols=201 Identities=17% Similarity=0.278 Sum_probs=169.1
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~lV~ 609 (766)
++|...+.||+|+||.||+|+.. ++.||||++...... .++|.+|++++++++||||+++++++... .+..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 46888999999999999999975 889999999765432 45799999999999999999999987653 25789999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++.+... ..+++.++..++.|++.||+|||+. .++|+||||||+||+++.++.+||+|||++..
T Consensus 89 e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~ 162 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGTN-----FVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFS 162 (271)
T ss_dssp ECCTTCBHHHHHHSCSS-----CCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred cccCCCcHHHHHhhccc-----CCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceee
Confidence 99999999999986432 3589999999999999999999986 12399999999999999999999999888755
Q ss_pred cCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ....+|+.|+|||......++. ++.++|||||||++|||+||+.||...
T Consensus 163 ~~~--~~~~~t~~y~aPE~~~~~~~~~------~~~~~Di~slG~il~el~~g~~p~~~~ 214 (271)
T 3kmu_A 163 FQS--PGRMYAPAWVAPEALQKKPEDT------NRRSADMWSFAVLLWELVTREVPFADL 214 (271)
T ss_dssp TSC--TTCBSCGGGSCHHHHHSCGGGS------CHHHHHHHHHHHHHHHHHHCSCTTTTS
T ss_pred ecc--cCccCCccccChhhhccCCCCC------CCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 322 3346789999999876554432 456899999999999999999999543
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=316.70 Aligned_cols=197 Identities=18% Similarity=0.197 Sum_probs=165.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++...... .+.+.+|++++++++||||+++++++.. ++..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~ 81 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRR-KRRLHLVF 81 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeec-CCeEEEEE
Confidence 5788999999999999999996 46999999998654433 4578899999999999999999998876 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 82 e~~~~~~l~~~~~~~~-------~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 151 (311)
T 4agu_A 82 EYCDHTVLHELDRYQR-------GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARL 151 (311)
T ss_dssp ECCSEEHHHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EeCCCchHHHHHhhhc-------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchh
Confidence 9999999999886543 389999999999999999999998 999999999999999999999999999986
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....+|..|+|||....... ++.++||||+||++|||+||+.||...
T Consensus 152 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~g~~p~~~~ 206 (311)
T 4agu_A 152 LTGPSDYYDDEVATRWYRSPELLVGDTQ--------YGPPVDVWAIGCVFAELLSGVPLWPGK 206 (311)
T ss_dssp CC------------GGGCCHHHHHTCSC--------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccCcccccCCCcCCccccChHHHhcCCC--------CCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence 5322 234578999999998754221 578999999999999999999999543
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=316.21 Aligned_cols=193 Identities=19% Similarity=0.155 Sum_probs=161.7
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC---HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK---TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||+||+|+.. +|+.||||++...... ..++.+|+..+.++ +|||||+++++|.+ ++..++|
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-~~~~~lv 135 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-GGILYLQ 135 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-CCEEEEE
Confidence 46899999999999999999964 7999999998654332 34566677666666 89999999998876 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+ +|+|.+++...+ ..++|.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++
T Consensus 136 ~e~~-~~~L~~~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~ 205 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWG------ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLV 205 (311)
T ss_dssp EECC-CCBHHHHHHHHC------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCE
T ss_pred Eecc-CCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeee
Confidence 9999 679999987643 2499999999999999999999998 99999999999999999999999999987
Q ss_pred hcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 689 AQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 689 ~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
..... .....||+.|+|||.+.+ . ++.++|||||||++|||++|+.|+.
T Consensus 206 ~~~~~~~~~~~~gt~~y~aPE~~~~-~---------~~~~~DiwslG~il~el~~g~~~~~ 256 (311)
T 3p1a_A 206 ELGTAGAGEVQEGDPRYMAPELLQG-S---------YGTAADVFSLGLTILEVACNMELPH 256 (311)
T ss_dssp ECC------CCCCCGGGCCGGGGGT-C---------CSTHHHHHHHHHHHHHHHHTCCCCS
T ss_pred ecccCCCCcccCCCccccCHhHhcC-C---------CCchhhHHHHHHHHHHHHhCCCCCC
Confidence 66432 234468999999998753 2 4789999999999999999987764
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=325.68 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=150.9
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEec-----CC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMER-----EN 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~ 603 (766)
.++|+..+.||+|+||.||+|. ..+|+.||||++..... ..+++.+|++++++++|||||++++++... ..
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 4679999999999999999998 46799999999965332 256789999999999999999999987542 24
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+|+||+ +++|.+++... .+++..+..++.||++||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~D 175 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILD 175 (367)
T ss_dssp CCEEEEECC-CEECC-----C--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC
T ss_pred eEEEEeccc-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEee
Confidence 589999999 68999988642 389999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++..........+|++|+|||.+..... ++.++||||+||++|||+||+.||...
T Consensus 176 FG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~pf~~~ 233 (367)
T 2fst_X 176 FGLARHTADEMTGYVATRWYRAPEIMLNWMH--------YNQTVDIWSVGCIMAELLTGRTLFPGT 233 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCS--------CCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccccccCCCcCcCcCccChHHHcCCcC--------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999887666666789999999998754221 578999999999999999999999543
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=308.64 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=171.4
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|.. .+++.||||.+...... .+.+.+|++++++++||||+++++++.+ ++..|+||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~ 84 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-GNIQYLFL 84 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-CCEEEEEE
Confidence 35688899999999999999996 47899999999754432 5689999999999999999999998765 56889999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.++.
T Consensus 85 e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 154 (276)
T 2yex_A 85 EYCSGGELFDRIEPDI-------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATV 154 (276)
T ss_dssp ECCTTEEGGGGSBTTT-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EecCCCcHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccc
Confidence 9999999999996542 389999999999999999999998 999999999999999999999999999975
Q ss_pred cCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 690 QGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 690 ~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... ......+|..|+|||......+ .+.++|||||||++|||+||+.||....
T Consensus 155 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~g~~p~~~~~ 212 (276)
T 2yex_A 155 FRYNNRERLLNKMCGTLPYVAPELLKRREF--------HAEPVDVWSCGIVLTAMLAGELPWDQPS 212 (276)
T ss_dssp CEETTEECCBCCCCSCGGGCCGGGGTCSSB--------CHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred cCCCcchhcccCCccccCccChHHHhcCCC--------CCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence 421 1234567899999998765442 3679999999999999999999996543
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=309.41 Aligned_cols=195 Identities=15% Similarity=0.167 Sum_probs=169.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|...+.||+|+||.||+|.. .++..||+|++..... ..+++.+|++++++++||||+++++++.. ++..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~ 87 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED-NTDIYLVMEL 87 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEEEEC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCeEEEEEec
Confidence 4588899999999999999995 4578999999976543 36789999999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccchhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLSEVC 688 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG~a~ 688 (766)
+++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~~~~~L~~~~~~~~-------~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~ 157 (277)
T 3f3z_A 88 CTGGELFERVVHKR-------VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA 157 (277)
T ss_dssp CCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred cCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence 99999999987654 389999999999999999999998 99999999999999 788999999999997
Q ss_pred hcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ......+|+.|+|||..... ++.++|||||||++|||+||+.||...
T Consensus 158 ~~~~~~~~~~~~~t~~y~aPE~~~~~----------~~~~~Di~slG~~l~~l~~g~~p~~~~ 210 (277)
T 3f3z_A 158 RFKPGKMMRTKVGTPYYVSPQVLEGL----------YGPECDEWSAGVMMYVLLCGYPPFSAP 210 (277)
T ss_dssp ECCTTSCBCCCCSCTTTCCHHHHTTC----------BCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eccCccchhccCCCCCccChHHhccc----------CCchhhehhHHHHHHHHHHCCCCCCCC
Confidence 6532 23455789999999986432 478999999999999999999999543
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=325.74 Aligned_cols=197 Identities=18% Similarity=0.145 Sum_probs=168.2
Q ss_pred CCCCccceeecCCcceEEEEEE----cCCcEEEEEEeeccc-----cCHHHHHHHHHHHhhc-CCCCcccceeEEEecCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQS-----VKTEAYLLELDFFSKV-SHARLVPLLGHCMEREN 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~-----~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 603 (766)
++|+..+.||+|+||.||+|+. .+|+.||||+++... ...+.+.+|+++++++ +||||+++++++.. ++
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~~ 132 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-ET 132 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE-TT
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee-Cc
Confidence 5688999999999999999996 478999999986532 1245688899999999 69999999997765 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++||||+++|+|.+++.... .+++.++..++.||+.||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 202 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-------RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTD 202 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESC
T ss_pred eEEEEeecCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEee
Confidence 8999999999999999997654 389999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCC----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGG----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++.... ......+|..|+|||........ ++.++|||||||++|||+||+.||..
T Consensus 203 fG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-------~~~~~DvwslG~il~ell~g~~pf~~ 264 (355)
T 1vzo_A 203 FGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSG-------HDKAVDWWSLGVLMYELLTGASPFTV 264 (355)
T ss_dssp SSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC----------CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred CCCCeecccCCCCcccCcccCcCccChhhhcCCCCC-------CCchhhHHHHHHHHHHHHHCCCCCcc
Confidence 999976522 12345689999999987653322 47899999999999999999999953
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=311.28 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=167.6
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..+.||+|+||.||+|.. .+++.||||++..... ..+.+.+|++++++++||||+++++++.+ ++..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~l 86 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-ATRVYL 86 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEec-CCEEEE
Confidence 45688899999999999999985 5678999999965432 25679999999999999999999998765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 87 v~e~~~~~~l~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~ 156 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLS-------KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWS 156 (279)
T ss_dssp EECCCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEE
T ss_pred EEecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEecccc
Confidence 999999999999997653 389999999999999999999997 9999999999999999999999999998
Q ss_pred hhcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ......+|..|+|||...... ++.++||||+||++|||++|+.||...
T Consensus 157 ~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 210 (279)
T 3fdn_A 157 VHAPSSRRTDLCGTLDYLPPEMIEGRM---------HDEKVDLWSLGVLCYEFLVGKPPFEAN 210 (279)
T ss_dssp SCC--------CCCCTTCCHHHHTTCC---------CCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ccCCcccccccCCCCCccCHhHhccCC---------CCccchhHhHHHHHHHHHHCCCCCCCC
Confidence 66532 234457899999999876543 468999999999999999999999643
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=316.67 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=170.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|+. .+|+.||||.+..... ..+++.+|++++++++||||+++++++.+ ++..
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~ 90 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN-RTDV 90 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec-CCEE
Confidence 4588899999999999999995 4689999999975432 25679999999999999999999998765 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC----cEEe
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF----EVRL 681 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~kl 681 (766)
++||||+++|+|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl 160 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKL 160 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-------CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEE
T ss_pred EEEEEcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEE
Confidence 99999999999999997543 389999999999999999999998 999999999999999888 7999
Q ss_pred ccchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 682 GSLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+|||+++..... .....+|+.|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 161 ~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~ 220 (321)
T 2a2a_A 161 IDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEP---------LGLEADMWSIGVITYILLSGASPFLG 220 (321)
T ss_dssp CCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred ccCccceecCccccccccCCCCCccCcccccCCC---------CCCccccHHHHHHHHHHHHCCCCCCC
Confidence 999999876432 34456899999999876543 47899999999999999999999954
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=321.06 Aligned_cols=196 Identities=18% Similarity=0.303 Sum_probs=161.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc----EEEEEEeeccc--cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI----PVVIKRIDLQS--VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~----~vavK~l~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..++||+|+||.||+|+. .+++ +||+|.+.... ...++|.+|++++++++|||||+++++|.. +..+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--~~~~ 92 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT--STVQ 92 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES--SSEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec--CCeE
Confidence 4688899999999999999984 4444 46888875433 235789999999999999999999998875 3589
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|+||+++|+|.+++..... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~ 163 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGL 163 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTT------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTH
T ss_pred EEEEecCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcc
Confidence 99999999999999986542 489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 687 VCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
++...... ....+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 164 a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~~~ 223 (327)
T 3poz_A 164 AKLLGAEEKEYHAEGGKVPIKWMALESILHRI---------YTHQSDVWSYGVTVWELMTFGSKPYDGI 223 (327)
T ss_dssp HHHHTTTCC-------CCCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred eeEccCCcccccccCCCccccccChHHhccCC---------CCchhhhhhhHHHHHHHHhcCCCCccCC
Confidence 98763321 2234577899999875443 5789999999999999999 99999643
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=320.37 Aligned_cols=198 Identities=17% Similarity=0.271 Sum_probs=161.8
Q ss_pred HhCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
..++|+..+.||+|+||.||+|+ ..+++.||||+++..... .+.+.+|++++++++|||||++++++.. ++..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~l 110 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHH-NHRLHL 110 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEE-TTEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEec-CCEEEE
Confidence 44679999999999999999998 457999999999654332 4568899999999999999999998776 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee-----CCCCcEEec
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL-----DDKFEVRLG 682 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl-----~~~~~~kl~ 682 (766)
||||++ |+|.+++..... +++.++..++.|++.||+|||+. +|+||||||+|||+ +.++.+||+
T Consensus 111 v~e~~~-~~L~~~~~~~~~-------~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~ 179 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDKNPD-------VSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIG 179 (329)
T ss_dssp EEECCS-EEHHHHHHHCTT-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEEC
T ss_pred EEecCC-CCHHHHHhhcCC-------CCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEEC
Confidence 999998 599999976543 89999999999999999999998 99999999999999 455669999
Q ss_pred cchhhhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++.... ......+|..|+|||.+..... ++.++|||||||++|||+||+.||...
T Consensus 180 Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~pf~~~ 241 (329)
T 3gbz_A 180 DFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRH--------YSTSVDIWSIACIWAEMLMKTPLFPGD 241 (329)
T ss_dssp CTTHHHHHC-----------CCTTCCHHHHTTCCC--------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCCCccccCCcccccCCCcCCccccCHHHhcCCCC--------CCcHHHHHHHHHHHHHHHHCCCCcCCC
Confidence 9999987642 2344567999999998765332 578999999999999999999999543
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=308.39 Aligned_cols=198 Identities=17% Similarity=0.248 Sum_probs=154.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|...+.||+|+||.||+|+. .+|+.||||.+..... ..+++.+|++++++++||||+++++++.. .+..++
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~l 88 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED-SNYVYL 88 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC-SSEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc-CCeEEE
Confidence 35688899999999999999995 6799999999975432 24679999999999999999999998765 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.... ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 89 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~ 159 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKNRV------KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLA 159 (278)
T ss_dssp EEECCTTEEHHHHHHTCS------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTC
T ss_pred EEecCCCCcHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecce
Confidence 999999999999997543 2489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.... ......+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 160 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 215 (278)
T 3cok_A 160 TQLKMPHEKHYTLCGTPNYISPEIATRSA---------HGLESDVWSLGCMFYTLLIGRPPFDTD 215 (278)
T ss_dssp EECC-------------------------------------CTHHHHHHHHHHHHHHSSCSSCCC
T ss_pred eeccCCCCcceeccCCCCcCCcchhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCh
Confidence 76532 223456889999999876443 468999999999999999999999643
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=315.93 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=164.8
Q ss_pred CCCCcc-ceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDA-NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~-~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
+.|... ++||+|+||.||+|+ ..+++.||||++...... .+++.+|++++.++ +||||+++++++.+ ++..|+||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~-~~~~~lv~ 90 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEE-EDRFYLVF 90 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEee-CCEEEEEE
Confidence 456664 789999999999999 467999999999765433 67899999999995 79999999998876 57899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc---EEeccchh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE---VRLGSLSE 686 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~---~kl~DFG~ 686 (766)
||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+
T Consensus 91 e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~ 160 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR-------HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDL 160 (316)
T ss_dssp ECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTC
T ss_pred EcCCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccC
Confidence 9999999999997654 389999999999999999999998 9999999999999998776 99999999
Q ss_pred hhhcCC----------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGG----------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~----------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++.... ......+|..|+|||.......+... ++.++|||||||++|||+||+.||...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~----~~~~~DiwslG~il~~l~~g~~pf~~~ 229 (316)
T 2ac3_A 161 GSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASI----YDKRCDLWSLGVILYILLSGYPPFVGR 229 (316)
T ss_dssp CC-------------------CCSGGGCCHHHHHHTSHHHHH----HTTTHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred ccccccCCccccccccccccccCCcCccChHHhhcccccccC----CCcccccHhHHHHHHHHHHCCCCCccc
Confidence 875421 11234589999999987532111111 578999999999999999999999644
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=321.03 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=169.7
Q ss_pred HhCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
..++|+..+.||+|+||.||+|+.. +++.||||.++..... .++|.+|++++++++||||+++++++.. ++
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~ 123 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV-GK 123 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CC
Confidence 4567999999999999999999964 3589999999754322 5679999999999999999999998765 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCC-----------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCC
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTE-----------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV 666 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~-----------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDl 666 (766)
..++||||+++|+|.+++....... .....+++.+++.++.||++||+|||++ +|+||||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dl 200 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDL 200 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCC
Confidence 8999999999999999997642100 0114599999999999999999999998 9999999
Q ss_pred CCCCeeeCCCCcEEeccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 667 QASSILLDDKFEVRLGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 667 Kp~NILl~~~~~~kl~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
||+||+++.++.+||+|||+++.... ......+|..|+|||...... ++.++|||||||++|||+|
T Consensus 201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~t 271 (343)
T 1luf_A 201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNR---------YTTESDVWAYGVVLWEIFS 271 (343)
T ss_dssp SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHT
T ss_pred CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCC---------cCcccccHHHHHHHHHHHh
Confidence 99999999999999999999976522 123345688899999875433 4789999999999999999
Q ss_pred -CCCCCCCC
Q 004248 742 -NNHLNLSS 749 (766)
Q Consensus 742 -G~~p~~~~ 749 (766)
|+.||...
T Consensus 272 ~g~~p~~~~ 280 (343)
T 1luf_A 272 YGLQPYYGM 280 (343)
T ss_dssp TTCCTTTTS
T ss_pred cCCCcCCCC
Confidence 99999543
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=308.51 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=170.1
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|+..+.||+|+||.||+|.. .+|+.||+|++...... .+++.+|++++++++||||+++++++.. ++..++|
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v 83 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-ESFHYLV 83 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-CCEEEEE
Confidence 46789999999999999999995 56899999999765433 4578899999999999999999998765 5678999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc---EEeccch
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE---VRLGSLS 685 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~---~kl~DFG 685 (766)
|||+++|+|.+.+.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||
T Consensus 84 ~e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg 153 (284)
T 3kk8_A 84 FDLVTGGELFEDIVARE-------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFG 153 (284)
T ss_dssp ECCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeece
Confidence 99999999999987654 389999999999999999999998 9999999999999987655 9999999
Q ss_pred hhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+...... .....+|+.|+|||...... ++.++||||+||++|||++|+.||...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~l~~g~~pf~~~ 210 (284)
T 3kk8_A 154 LAIEVNDSEAWHGFAGTPGYLSPEVLKKDP---------YSKPVDIWACGVILYILLVGYPPFWDE 210 (284)
T ss_dssp TCEECCSSCBCCCSCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eeEEcccCccccCCCCCcCCcCchhhcCCC---------CCcccchHHHHHHHHHHHHCCCCCCCC
Confidence 99766432 23457899999999876543 478999999999999999999999543
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=315.98 Aligned_cols=197 Identities=20% Similarity=0.332 Sum_probs=160.3
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|+.. ++.||||++.... ..+.|.+|++++++++|||||++++++. +..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~---~~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES-ERKAFIVELRQLSRVNHPNIVKLYGACL---NPVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT-HHHHHHHHHHHHHHCCCTTBCCEEEBCT---TTTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh-HHHHHHHHHHHHhcCCCCCcCeEEEEEc---CCcEEEEEcCC
Confidence 45778899999999999999875 6889999986432 3567999999999999999999999764 35899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc-EEeccchhhhhcCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE-VRLGSLSEVCAQGG 692 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~-~kl~DFG~a~~~~~ 692 (766)
+|+|.+++..... ...+++..+..++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++....
T Consensus 83 ~~~L~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 83 GGSLYNVLHGAEP----LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp TCBHHHHHHCSSS----EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred CCCHHHHHhccCC----CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 9999999975432 134789999999999999999999943348999999999999998886 79999999987655
Q ss_pred CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 693 DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 693 ~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
......+|..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 159 ~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~g~~p~~~ 205 (307)
T 2eva_A 159 HMTNNKGSAAWMAPEVFEGSN---------YSEKCDVFSWGIILWEVITRRKPFDE 205 (307)
T ss_dssp ------CCTTSSCHHHHTCCC---------CCTHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred ccccCCCCCceEChhhhCCCC---------CCcHHHHHHHHHHHHHHHHCCCCchh
Confidence 555567899999999876543 57899999999999999999999964
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=316.81 Aligned_cols=196 Identities=17% Similarity=0.321 Sum_probs=164.4
Q ss_pred CCCCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~ 606 (766)
++|+..+.||+|+||.||+|+. .+++.||||++...... .++|.+|++++++++||||+++++++... ....+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 4688899999999999999984 36899999999754433 56799999999999999999999987642 24589
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 90 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~ 160 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQKHK------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGL 160 (295)
T ss_dssp EEEECCTTCBHHHHHHHCG------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCS
T ss_pred EEEEeCCCCCHHHHHHhcc------cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcc
Confidence 9999999999999997643 2489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 687 VCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 687 a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++..... .....++..|+|||...... ++.++|||||||++|||+||+.|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~l~~g~~~~~ 218 (295)
T 3ugc_A 161 TKVLPQDKEFFKVKEPGESPIFWYAPESLTESK---------FSVASDVWSFGVVLYELFTYIEKSK 218 (295)
T ss_dssp CC-------------CTTCGGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred cccccCCcceeeeccCCCCccceeCcHHhcCCC---------CChHHHHHHHHHHHHHHHhcccccC
Confidence 9865322 12234567799999875443 4789999999999999999999874
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=335.30 Aligned_cols=197 Identities=20% Similarity=0.313 Sum_probs=166.8
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++|...+.||+|+||.||+|...++..||||+++......++|.+|+++|++++|||||++++++.+ +..++|||||
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~iv~e~~ 260 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEYM 260 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECCC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC--CceEEEehhh
Confidence 35678889999999999999998888899999998766667889999999999999999999998754 5789999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++..... ..+++.++..++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+++....
T Consensus 261 ~~gsL~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 332 (452)
T 1fmk_A 261 SKGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED 332 (452)
T ss_dssp TTCBHHHHHSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred cCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence 99999999975321 2489999999999999999999998 999999999999999999999999999986532
Q ss_pred C----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 693 D----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 693 ~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. .....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 333 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~sDvwslG~~l~el~t~g~~P~~~ 384 (452)
T 1fmk_A 333 NEYTARQGAKFPIKWTAPEAALYGR---------FTIKSDVWSFGILLTELTTKGRVPYPG 384 (452)
T ss_dssp ----------CCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred CceecccCCcccccccCHhHHhcCC---------CCccccHHhHHHHHHHHHhCCCCCCCC
Confidence 2 12234567899999875443 5789999999999999999 9999954
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=329.36 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=171.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc------CCCCcccceeEEEecCCcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV------SHARLVPLLGHCMERENEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l------~H~niv~l~~~~~~~~~~~ 605 (766)
.++|+..++||+|+||.||+|.. .+++.||||++.......+++.+|+++++.+ +|+||+++++++.. .+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~-~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF-RNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE-TTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc-CCeE
Confidence 35688999999999999999985 5689999999976554456788899998887 57799999998766 5789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc--EEecc
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE--VRLGS 683 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~--~kl~D 683 (766)
++||||++ |+|.+++..... ..+++..+..++.||+.||+|||+. +||||||||+|||++.++. +||+|
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~D 245 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKF-----QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVID 245 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECC
T ss_pred EEEEeccC-CCHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEee
Confidence 99999997 699999976543 3489999999999999999999998 9999999999999999987 99999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++..........+|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 246 FG~a~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 246 FGSSCYEHQRVYTYIQSRFYRAPEVILGAR---------YGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp CTTCEETTCCCCSSCSCGGGCCHHHHHTBC---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccceecCCcccccCCCCCccChHHHhCCC---------CCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 999987766666778999999999876544 478999999999999999999998543
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=320.88 Aligned_cols=197 Identities=19% Similarity=0.263 Sum_probs=162.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...+.||+|+||.||+|+. .+++.||||++...... ...+.+|++++++++|||||++++++.. ++..++|||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 80 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-EKSLTLVFE 80 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEEC-SSCEEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEee-CCEEEEEec
Confidence 5688899999999999999996 47899999999654332 2246689999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|++ |+|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 81 ~~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 150 (324)
T 3mtl_A 81 YLD-KDLKQYLDDCGN------IINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAK 150 (324)
T ss_dssp CCS-EEHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC
T ss_pred ccc-cCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccc
Confidence 998 599999876432 489999999999999999999998 9999999999999999999999999999765
Q ss_pred CC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ......+|..|+|||....... ++.++||||+||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~~g~~pf~~~ 204 (324)
T 3mtl_A 151 SIPTKTYDNEVVTLWYRPPDILLGSTD--------YSTQIDMWGVGCIFYEMATGRPLFPGS 204 (324)
T ss_dssp ------------CGGGCCHHHHTTCCC--------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCCccccccccCcccccChhhhcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 32 2234467999999998754322 578999999999999999999999543
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=312.34 Aligned_cols=199 Identities=15% Similarity=0.191 Sum_probs=165.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|...+.||+|+||.||+|.. .+++.||+|++..... ..+.+.+|++++++++||||+++++++.+ .+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e 100 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-YHNMYIVME 100 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEEEC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-CCeEEEEEE
Confidence 4588899999999999999995 5689999999976543 36789999999999999999999998765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccchhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLSEV 687 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG~a 687 (766)
|+++|+|.+++..... ....+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++
T Consensus 101 ~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a 174 (285)
T 3is5_A 101 TCEGGELLERIVSAQA---RGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174 (285)
T ss_dssp CCSCCBHHHHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCC
T ss_pred eCCCCcHHHHHHhhhh---cccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecc
Confidence 9999999999864321 113489999999999999999999998 99999999999999 45688999999999
Q ss_pred hhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.... ......+|..|+|||.... . ++.++|||||||++|||++|+.||...
T Consensus 175 ~~~~~~~~~~~~~~t~~y~aPE~~~~-~---------~~~~~Di~slG~il~~ll~g~~pf~~~ 228 (285)
T 3is5_A 175 ELFKSDEHSTNAAGTALYMAPEVFKR-D---------VTFKCDIWSAGVVMYFLLTGCLPFTGT 228 (285)
T ss_dssp CC----------CTTGGGCCHHHHTT-C---------CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCCcccCcCcccccCcCChHHhcc-C---------CCcccCeehHHHHHHHHHhCCCCCCCC
Confidence 76532 2344568999999998642 2 478999999999999999999999644
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=307.96 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=171.6
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|...+++.||+|++.......+++.+|++++++++||||+++++++.+ ++..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcc-CCCeEEEEeCCC
Confidence 4678889999999999999998888999999998776667889999999999999999999998765 567999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~~L~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 157 (267)
T 3t9t_A 87 HGCLSDYLRTQRG------LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 157 (267)
T ss_dssp TCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred CCcHHHHHhhCcc------cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccc
Confidence 9999999976432 489999999999999999999998 9999999999999999999999999999865321
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....++..|+|||...... ++.++||||+||++|||+| |+.||...
T Consensus 158 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 209 (267)
T 3t9t_A 158 QYTSSTGTKFPVKWASPEVFSFSR---------YSSKSDVWSFGVLMWEVFSEGKIPYENR 209 (267)
T ss_dssp HHHSTTSTTCCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred cccccccccccccccChhhhcCCC---------ccchhchhhhHHHHHHHhccCCCCCCCC
Confidence 22334677899999875433 4789999999999999999 89998543
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=319.33 Aligned_cols=208 Identities=20% Similarity=0.255 Sum_probs=169.6
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC------------HHHHHHHHHHHhhcCCCCc
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK------------TEAYLLELDFFSKVSHARL 591 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~------------~~~~~~E~~~l~~l~H~ni 591 (766)
...+++....++|...+.||+|+||.||+|...+|+.||||++...... .+++.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 3456788889999999999999999999999888999999998543211 2679999999999999999
Q ss_pred ccceeEEEecC----CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCC
Q 004248 592 VPLLGHCMERE----NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQ 667 (766)
Q Consensus 592 v~l~~~~~~~~----~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlK 667 (766)
+++++++...+ ...|+||||++ |+|.+++.... ..+++..+..++.|++.||+|||+. +|+|||||
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk 161 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR------IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLH 161 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCC
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCC
Confidence 99999875422 35799999998 69998887543 2489999999999999999999998 99999999
Q ss_pred CCCeeeCCCCcEEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCC
Q 004248 668 ASSILLDDKFEVRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745 (766)
Q Consensus 668 p~NILl~~~~~~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p 745 (766)
|+||+++.++.+||+|||+++.... ......+|+.|+|||....... ++.++||||+||++|||+||+.|
T Consensus 162 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~l~~g~~p 233 (362)
T 3pg1_A 162 PGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKG--------FTKLVDMWSAGCVMAEMFNRKAL 233 (362)
T ss_dssp GGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTT--------CCTHHHHHHHHHHHHHHHHSSCS
T ss_pred hHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCC--------CCcHhHHHhHHHHHHHHHhCCCC
Confidence 9999999999999999999975432 2344578899999998754221 57899999999999999999999
Q ss_pred CCCC
Q 004248 746 NLSS 749 (766)
Q Consensus 746 ~~~~ 749 (766)
|...
T Consensus 234 f~~~ 237 (362)
T 3pg1_A 234 FRGS 237 (362)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9643
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=325.07 Aligned_cols=201 Identities=14% Similarity=0.164 Sum_probs=164.1
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecC-------
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERE------- 602 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~------- 602 (766)
...++|...+.||+|+||.||+|+. .+|+.||||++..... ...+|+++|++++|||||++++++....
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~---~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~ 80 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR---YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPP 80 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHTTCCCTTBCCEEEEEEEC--------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc---hHHHHHHHHHHcCCCCccchhheeeecCccccccc
Confidence 3567899999999999999999984 6799999999865432 2347999999999999999999875422
Q ss_pred ------------------------------CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhh
Q 004248 603 ------------------------------NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652 (766)
Q Consensus 603 ------------------------------~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~y 652 (766)
...++|||||+ |+|.+.+..... ....+++..+..++.|+++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~l~~~~~~~i~~qi~~aL~~ 156 (383)
T 3eb0_A 81 QPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIR---SGRSIPMNLISIYIYQLFRAVGF 156 (383)
T ss_dssp -----------------------------CCEEEEEECCCS-EEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHH
Confidence 23789999998 588888764211 11358999999999999999999
Q ss_pred hccCCCCCeEecCCCCCCeeeC-CCCcEEeccchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccce
Q 004248 653 LHHECTLPFVHRDVQASSILLD-DKFEVRLGSLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHI 729 (766)
Q Consensus 653 LH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv 729 (766)
||+. +|+||||||+|||++ .++.+||+|||+|+... .......+|+.|+|||.+.+... ++.++||
T Consensus 157 LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~Di 225 (383)
T 3eb0_A 157 IHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATE--------YTPSIDL 225 (383)
T ss_dssp HHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSS--------CCTHHHH
T ss_pred HHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCC--------CCcchhh
Confidence 9998 999999999999998 68999999999998653 33445678999999998754332 5789999
Q ss_pred ecchHHHHHHhcCCCCCCCC
Q 004248 730 YFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 730 ~s~Gvvl~elltG~~p~~~~ 749 (766)
||+||++|||++|+.||...
T Consensus 226 wslG~il~ell~g~~pf~~~ 245 (383)
T 3eb0_A 226 WSIGCVFGELILGKPLFSGE 245 (383)
T ss_dssp HHHHHHHHHHHHSSCSSCCS
T ss_pred hhHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999543
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=323.60 Aligned_cols=195 Identities=22% Similarity=0.353 Sum_probs=155.7
Q ss_pred CCccceeecCCcceEEEEEEc--CC--cEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 536 FSDANLIKNGHSGDLFRGILE--GG--IPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~--~g--~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
|...++||+|+||.||+|+.. ++ ..||||.++..... .++|.+|++++++++|||||+++++|.+.++..++||
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~ 170 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 170 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence 556789999999999999853 22 46899998653332 5689999999999999999999998876566789999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++.... ..+++.++..++.||++||+|||+. +|+||||||+|||+++++.+||+|||+++.
T Consensus 171 e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~ 241 (373)
T 3c1x_A 171 PYMKHGDLRNFIRNET------HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD 241 (373)
T ss_dssp ECCTTCBHHHHHHCTT------CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred ECCCCCCHHHHHhhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccc
Confidence 9999999999997543 2488999999999999999999998 999999999999999999999999999986
Q ss_pred cCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 690 QGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 690 ~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.... .....+|..|+|||...... ++.++|||||||++|||+| |++||..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~DvwSlG~il~ellt~~~~p~~~ 299 (373)
T 3c1x_A 242 MYDKEFDSVHNKTGAKLPVKWMALESLQTQK---------FTTKSDVWSFGVLLWELMTRGAPPYPD 299 (373)
T ss_dssp ----------------CCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred ccccccccccccCCCCCcccccChHHhcCCC---------CCcHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 5321 12234567899999875433 5789999999999999999 6666643
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=331.43 Aligned_cols=208 Identities=18% Similarity=0.190 Sum_probs=169.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~lV~ 609 (766)
++|...++||+|+||.||+|.. .+|+.||||++..... ..+.+.+|++++++++|||||++++++.... ...++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 4588899999999999999995 4589999999975432 2577899999999999999999999876533 3689999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee----CCCCcEEeccch
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL----DDKFEVRLGSLS 685 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DFG 685 (766)
|||++|+|.+++..... ...+++.++..++.|++.||+|||+. +|+||||||+|||+ +.++.+||+|||
T Consensus 89 e~~~~g~L~~~l~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG 161 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPSN----AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFG 161 (396)
T ss_dssp CCCTTEEHHHHTTSGGG----TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGG
T ss_pred ecCCCCCHHHHHHhhhc----ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCC
Confidence 99999999999975432 12389999999999999999999998 99999999999999 788889999999
Q ss_pred hhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....+|..|+|||.+....... .....++.++|||||||++|||+||+.||...
T Consensus 162 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~-~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~ 226 (396)
T 4eut_A 162 AARELEDDEQFVSLYGTEEYLHPDMYERAVLRK-DHQKKYGATVDLWSIGVTFYHAATGSLPFRPF 226 (396)
T ss_dssp GCEECCCGGGSSCSSSCCTTCCHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECT
T ss_pred CceEccCCCccccccCCccccCHHHhhcccccc-ccccCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 99876332 33456899999999764311000 00001578999999999999999999999543
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=318.35 Aligned_cols=197 Identities=21% Similarity=0.281 Sum_probs=163.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcE----EEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIP----VVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~----vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..++||+|+||.||+|+. .+++. ||+|.+..... ..+++.+|+.++++++|||||++++++. ++..+
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~ 90 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP--GSSLQ 90 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC--BSSEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCccE
Confidence 4688899999999999999984 44544 88888754332 2356889999999999999999999774 35789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 91 ~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~ 161 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHR------GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGV 161 (325)
T ss_dssp EEEECCTTCBSHHHHHSSG------GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSG
T ss_pred EEEEeCCCCCHHHHHHHcc------ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCc
Confidence 9999999999999997543 2489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 687 VCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 687 a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||....
T Consensus 162 a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el~~~g~~p~~~~~ 222 (325)
T 3kex_A 162 ADLLPPDDKQLLYSEAKTPIKWMALESIHFGK---------YTHQSDVWSYGVTVWELMTFGAEPYAGLR 222 (325)
T ss_dssp GGGSCCCTTCCC-----CCTTTSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred ccccCcccccccccCCCCcccccChHHhccCC---------CChhhHhHHhHHHHHHHHhCCCCCccccC
Confidence 9876322 23345677899999875443 4789999999999999999 999996543
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=306.73 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=166.3
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec---CCcEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER---ENEKFL 607 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~---~~~~~l 607 (766)
.|...+.||+|+||.||+|.. .++..||+|++...... .+.+.+|++++++++||||+++++++... ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 366778899999999999985 56889999999765433 46799999999999999999999987542 345899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CCCcEEeccchh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DKFEVRLGSLSE 686 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFG~ 686 (766)
||||+++|+|.+++.+.. .+++..+..++.|++.||+|||+. .++|+||||||+||+++ +++.+||+|||+
T Consensus 107 v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFK-------VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred EEEecCCCCHHHHHHHcc-------CCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 999999999999997653 389999999999999999999997 12399999999999998 789999999999
Q ss_pred hhhcCCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQGGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+...... .....+|+.|+|||.... . ++.++||||+||++|||+||+.||..
T Consensus 179 ~~~~~~~~~~~~~~t~~y~aPE~~~~-~---------~~~~~Di~slG~~l~~l~~g~~pf~~ 231 (290)
T 1t4h_A 179 ATLKRASFAKAVIGTPEFMAPEMYEE-K---------YDESVDVYAFGMCMLEMATSEYPYSE 231 (290)
T ss_dssp GGGCCTTSBEESCSSCCCCCGGGGGT-C---------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred cccccccccccccCCcCcCCHHHHhc-c---------CCCcchHHHHHHHHHHHHhCCCCCCC
Confidence 9766433 344568999999997642 1 47899999999999999999999954
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=323.13 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=162.8
Q ss_pred hCCCCccceeecCCcceEEEEEEcC------CcEEEEEEeeccccC------------HHHHHHHHHHHhhcCCCCcccc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVK------------TEAYLLELDFFSKVSHARLVPL 594 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~------g~~vavK~l~~~~~~------------~~~~~~E~~~l~~l~H~niv~l 594 (766)
.++|...+.||+|+||.||+|.... ++.||||++...... ...+.+|+..++.++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4578999999999999999998644 478999998754321 1235567777888899999999
Q ss_pred eeEEEecC---CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCe
Q 004248 595 LGHCMERE---NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSI 671 (766)
Q Consensus 595 ~~~~~~~~---~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NI 671 (766)
++++.... ...|+||||| +|+|.+++.... ..++|.++..++.||+.||+|||+. +|+||||||+||
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~------~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Ni 183 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA------KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNL 183 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGE
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHE
Confidence 99886532 3479999999 999999997643 2499999999999999999999998 999999999999
Q ss_pred eeC--CCCcEEeccchhhhhcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHH
Q 004248 672 LLD--DKFEVRLGSLSEVCAQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739 (766)
Q Consensus 672 Ll~--~~~~~kl~DFG~a~~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~el 739 (766)
|++ .++.+||+|||+++..... .....||..|+|||...... ++.++|||||||++|||
T Consensus 184 ll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~~l~el 254 (364)
T 3op5_A 184 LLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVA---------PSRRGDLEILGYCMIQW 254 (364)
T ss_dssp EEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCC---------CCchhhHHHHHHHHHHH
Confidence 999 8899999999999764211 12345899999999876544 47899999999999999
Q ss_pred hcCCCCCCC
Q 004248 740 IFNNHLNLS 748 (766)
Q Consensus 740 ltG~~p~~~ 748 (766)
+||+.||..
T Consensus 255 ~~g~~Pf~~ 263 (364)
T 3op5_A 255 LTGHLPWED 263 (364)
T ss_dssp HHSCCTTGG
T ss_pred HhCCCCccc
Confidence 999999963
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=322.54 Aligned_cols=198 Identities=20% Similarity=0.244 Sum_probs=169.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|.. .+++.||+|++...... .+.+.+|++++++++||||+++++++.. ++..++|||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e 111 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICME 111 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-TTEEEEEEC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-CCEEEEEEE
Confidence 4688899999999999999995 47899999999765322 5679999999999999999999998876 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.+.+ .+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||+|||+++..
T Consensus 112 ~~~~~~L~~~l~~~~-------~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 182 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-------RIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL 182 (360)
T ss_dssp CCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHH
T ss_pred CCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEEEEECCCCccc
Confidence 999999999997654 389999999999999999999973 17999999999999999999999999998754
Q ss_pred C-CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 691 G-GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 691 ~-~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
. .......+|+.|+|||...... ++.++|||||||++|||+||+.||....
T Consensus 183 ~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~~ 234 (360)
T 3eqc_A 183 IDSMANSFVGTRSYMSPERLQGTH---------YSVQSDIWSMGLSLVEMAVGRYPIPPPD 234 (360)
T ss_dssp HHHC----CCCCTTCCHHHHTTCC---------CSHHHHHHHHHHHHHHHHHTSCCSSCCC
T ss_pred ccccccCCCCCCCeECHHHHcCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 2 2334457899999999876543 4789999999999999999999996433
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=308.30 Aligned_cols=196 Identities=15% Similarity=0.211 Sum_probs=170.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+++.||||.+..... ..+.+.+|++++++++||||+++++++.+ ++..++|
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv 92 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHD-RKRIYLM 92 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEc-CCEEEEE
Confidence 4688899999999999999995 4688999999965422 25679999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++...+ .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.
T Consensus 93 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~ 162 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-------RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSV 162 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccc
Confidence 99999999999997653 389999999999999999999998 99999999999999999999999999987
Q ss_pred hcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ......++..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 215 (284)
T 2vgo_A 163 HAPSLRRRTMCGTLDYLPPEMIEGKT---------HDEKVDLWCAGVLCYEFLVGMPPFDSP 215 (284)
T ss_dssp ECSSSCBCCCCSCGGGCCHHHHTTCC---------BCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred cCcccccccccCCCCcCCHHHhccCC---------CCcccchhhHHHHHHHHHHCCCCCCCC
Confidence 6532 234456899999999876543 478999999999999999999999643
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=340.81 Aligned_cols=284 Identities=20% Similarity=0.301 Sum_probs=256.1
Q ss_pred hhhhccCCCCCEEecCCCCCCCC-----------------Cchhhh--hCCCCCCEEEccCCCCCccCCcccCCCCCCcE
Q 004248 110 ADALVNLTHLASFNASRFLLPGS-----------------IPDWLG--QQLPTLQALDLRSCSISGVIPFSLGNLTNLTS 170 (766)
Q Consensus 110 ~~~l~~l~~L~~L~ls~n~l~g~-----------------ip~~~~--~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~ 170 (766)
+..+.++++|++|++++|.+.|. +|+.++ . +++|++|+|++|.+.+.+|..|+++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45789999999999999999996 999987 6 999999999999999999999999999999
Q ss_pred EEeecCc-CCC-CCCccccCC------CCCCEEEccCCCCCCCCCc--ccCCCCCCCEEeccCCcCCCCCCCCCCCCCCc
Q 004248 171 LYLSDNG-LTG-TIPSSLGQL------SVLSVLDLSRNSLTGNIPT--SFGLLKNLSSLDISSNYLTGSIPPGLGTLSKL 240 (766)
Q Consensus 171 L~Ls~N~-l~~-~~p~~l~~L------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 240 (766)
|+|++|+ ++| .+|..++++ ++|++|+|++|+++ .+|. .|+++++|+.|+|++|.++|.+| .++.+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 998 899998887 99999999999999 8998 99999999999999999999999 89999999
Q ss_pred cEEEccCCCCCCCCccccCCCCC-CCEEEccCCcCCccCCcccCCCC--CCCEEEccCccCccccCCCccC-------CC
Q 004248 241 QYLNVSNNSLASSIPAQLGDLDS-LVDLDLSMNSLSGSVPSELRGLR--SLQKFVIGNNFLSGNLSVNLFP-------TV 310 (766)
Q Consensus 241 ~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~~p~~l~~l~--~L~~L~ls~N~l~g~~~~~~~~-------~l 310 (766)
++|+|++|+++ .+|..++++++ |++|++++|+++ .+|..+..++ +|+.|++++|.+++.+|..+ + .+
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~ 432 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKG 432 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh-cccccccccC
Confidence 99999999998 78989999999 999999999999 7898887765 89999999999998887654 4 67
Q ss_pred CcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCC-------CCcEEEccCCcCccCCCc-----
Q 004248 311 SQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNT-------STVELNISQNMFYGGLTP----- 378 (766)
Q Consensus 311 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~-------~l~~L~ls~N~l~g~~~~----- 378 (766)
.+|+.|+|++|+++..++..+..+++|++|+|++|+++ .+|...+.... +|+.|++++|.++ .+|.
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 510 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT 510 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence 79999999999999777777778999999999999999 77765544333 8999999999998 6764
Q ss_pred CCCCCCEEeccCCcCccccChhhh
Q 004248 379 VLGRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 379 ~l~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
.+++|+.|||++|++++ +|..+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGG
T ss_pred cCCCcCEEECCCCCCCC-cChhhh
Confidence 46789999999999998 887764
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=309.45 Aligned_cols=196 Identities=19% Similarity=0.353 Sum_probs=169.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|...++..||||++.......+.+.+|++++++++||||+++++++. ++..++||||++
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--~~~~~~v~e~~~ 90 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT--QEPIYIITEYME 90 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC--SSSCEEEEECCT
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc--CCCcEEEEecCC
Confidence 568889999999999999999888889999999876666788999999999999999999999765 356899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++.....
T Consensus 91 ~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 162 (279)
T 1qpc_A 91 NGSLVDFLKTPSG-----IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDN 162 (279)
T ss_dssp TCBHHHHTTSHHH-----HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSS
T ss_pred CCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCc
Confidence 9999999965321 2489999999999999999999998 9999999999999999999999999999866432
Q ss_pred C----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 A----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. ....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 163 ~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~~ 213 (279)
T 1qpc_A 163 EYTAREGAKFPIKWTAPEAINYGT---------FTIKSDVWSFGILLTEIVTHGRIPYPG 213 (279)
T ss_dssp CEECCTTCCCCTTTSCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred ccccccCCCCccCccChhhhccCC---------CCchhhhHHHHHHHHHHHhCCCCCCcc
Confidence 1 2234567899999875332 5789999999999999999 8999854
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=320.10 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=164.1
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++|+..+.||+|+||.||+|.. .+|+.||||.++.... .+.+|++++.++ +|||||++++++.+ ++..|+|||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~~hp~iv~~~~~~~~-~~~~~lv~E 96 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYGQHPNIITLKDVYDD-GKYVYVVTE 96 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHTTSTTBCCEEEEEEC-SSEEEEEEC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhcCCCCcCeEEEEEEc-CCEEEEEEe
Confidence 35688899999999999999995 5789999999976543 245788999888 79999999997765 578999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC----CcEEeccchh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK----FEVRLGSLSE 686 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~----~~~kl~DFG~ 686 (766)
||++|+|.+++.+.+ .+++.++..++.||+.||+|||+. +|+||||||+|||+.++ +.+||+|||+
T Consensus 97 ~~~gg~L~~~i~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~ 166 (342)
T 2qr7_A 97 LMKGGELLDKILRQK-------FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGF 166 (342)
T ss_dssp CCCSCBHHHHHHTCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTT
T ss_pred CCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCC
Confidence 999999999997653 389999999999999999999998 99999999999998543 3599999999
Q ss_pred hhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
++.... .....++|+.|+|||.+.... ++.++|||||||++|||++|+.||..
T Consensus 167 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~ell~g~~Pf~~ 222 (342)
T 2qr7_A 167 AKQLRAENGLLMTPCYTANFVAPEVLERQG---------YDAACDIWSLGVLLYTMLTGYTPFAN 222 (342)
T ss_dssp CEECBCTTCCBCCSSCCSSCCCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred cccCcCCCCceeccCCCccccCHHHhcCCC---------CCCccCeeeHhHHHHHHhcCCCCCCC
Confidence 986532 234557899999999875432 47899999999999999999999964
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=318.02 Aligned_cols=198 Identities=17% Similarity=0.275 Sum_probs=167.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-------C
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-------E 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-------~ 602 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++...... ...+.+|++++++++||||+++++++... .
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 5688999999999999999996 67999999998654332 46789999999999999999999988653 2
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
+..|+||||+++ +|.+.+.... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~ 166 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNVL------VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLA 166 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred ceEEEEEeccCC-CHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEc
Confidence 368999999985 8888876543 2489999999999999999999998 99999999999999999999999
Q ss_pred cchhhhhcC-------CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQG-------GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~-------~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++... .......+|+.|+|||.+..... ++.++|||||||++|||+||+.||...
T Consensus 167 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~pf~~~ 232 (351)
T 3mi9_A 167 DFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERD--------YGPPIDLWGAGCIMAEMWTRSPIMQGN 232 (351)
T ss_dssp CCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCS--------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cchhcccccccccccccccCCcccccCccCchhhcCCCC--------CCcHhHHHHHHHHHHHHHhCCCCCCCC
Confidence 999997653 12234567999999998754321 478999999999999999999998543
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=316.49 Aligned_cols=197 Identities=18% Similarity=0.265 Sum_probs=165.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++...... .+.+.+|++++++++||||+++++++.. ++..++||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~ 103 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-KKRWYLVF 103 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-CCEEEEEE
Confidence 5688899999999999999995 46899999998654433 4568899999999999999999998876 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 104 e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 173 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-------GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFART 173 (331)
T ss_dssp ECCSEEHHHHHHHSTT-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC--
T ss_pred ecCCcchHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCcee
Confidence 9999999988876443 389999999999999999999998 999999999999999999999999999976
Q ss_pred cCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ......+|..|+|||....... ++.++||||+||++|||+||+.||...
T Consensus 174 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~g~~pf~~~ 228 (331)
T 4aaa_A 174 LAAPGEVYDDEVATRWYRAPELLVGDVK--------YGKAVDVWAIGCLVTEMFMGEPLFPGD 228 (331)
T ss_dssp ----------CCCCCTTCCHHHHTTCTT--------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ecCCccccCCCcCCccccCcccccCCCC--------cchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 532 2334568999999998754321 578999999999999999999999544
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=319.96 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=164.2
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCC--CCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSH--ARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|...+++.||||++...... .+.+.+|++++++++| |||+++++++.. ++..|+|
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~-~~~~~lv 87 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-DQYIYMV 87 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEee-CCEEEEE
Confidence 458889999999999999999888999999999765433 4678999999999986 999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||| .+|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+|||++ ++.+||+|||+++
T Consensus 88 ~e~-~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~ 155 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIAN 155 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSC
T ss_pred EeC-CCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeeccccc
Confidence 995 5789999998654 389999999999999999999998 999999999999997 6789999999998
Q ss_pred hcCCC-----CccceeeecccCCCCCCCCceeeee--eeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD-----AHQSRITRLLRLPQSSEQGSSGMVI--YLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~--~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... .....||+.|+|||.+......... -...++.++|||||||++|||+||+.||..
T Consensus 156 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 222 (343)
T 3dbq_A 156 QMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 222 (343)
T ss_dssp CC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred ccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchh
Confidence 66322 2245689999999976431110000 001268899999999999999999999954
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=310.47 Aligned_cols=196 Identities=14% Similarity=0.161 Sum_probs=168.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|...+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++||||+++++++.+ .+..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~ 87 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYES-TTHYYLVMQL 87 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEEECC
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhccc-CCEEEEEEEc
Confidence 4688899999999999999995 4799999999976543 25678999999999999999999998765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccchhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLSEVC 688 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG~a~ 688 (766)
+++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~ 157 (304)
T 2jam_A 88 VSGGELFDRILERG-------VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSK 157 (304)
T ss_dssp CCSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTC
T ss_pred CCCccHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcce
Confidence 99999999997654 389999999999999999999998 99999999999999 788999999999997
Q ss_pred hcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ......+|..|+|||...... ++.++||||+||++|||+||+.||...
T Consensus 158 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 210 (304)
T 2jam_A 158 MEQNGIMSTACGTPGYVAPEVLAQKP---------YSKAVDCWSIGVITYILLCGYPPFYEE 210 (304)
T ss_dssp CCCCBTTHHHHSCCCBCCTTTBSSCS---------CCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred ecCCCccccccCCCCccChHHhccCC---------CCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 6533 233456899999999886543 478999999999999999999999543
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=320.32 Aligned_cols=210 Identities=16% Similarity=0.107 Sum_probs=168.2
Q ss_pred HHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc------cCHHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 529 LLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS------VKTEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 529 l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
+....++|+..+.||+|+||.||+|.. .+++.||||++.... ...+++.+|++++++++|||||++++++.+
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~- 99 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED- 99 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc-
Confidence 344567799999999999999999995 578899999996542 125689999999999999999999998865
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCC---------------------------------CcCCCCCHHHHHHHHHHHHH
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTE---------------------------------DDLQSLDWITRLKIAIGAAE 648 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~---------------------------------~~~~~l~~~~~~~i~~~ia~ 648 (766)
++..++|||||++|+|.+++....... .....+++..+..++.|++.
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 568999999999999999985311000 00112467778899999999
Q ss_pred HhhhhccCCCCCeEecCCCCCCeeeCCCC--cEEeccchhhhhcCC-------CCccceeeecccCCCCCCCCceeeeee
Q 004248 649 GLSYLHHECTLPFVHRDVQASSILLDDKF--EVRLGSLSEVCAQGG-------DAHQSRITRLLRLPQSSEQGSSGMVIY 719 (766)
Q Consensus 649 gL~yLH~~~~~~iiHrDlKp~NILl~~~~--~~kl~DFG~a~~~~~-------~~~~~~~t~~y~aPe~~~~~~~g~~~~ 719 (766)
||+|||+. +|+||||||+||+++.++ .+||+|||+++.... ......+|+.|+|||.+......
T Consensus 180 ~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~---- 252 (345)
T 3hko_A 180 ALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES---- 252 (345)
T ss_dssp HHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSC----
T ss_pred HHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCC----
Confidence 99999998 999999999999998776 899999999975421 12345689999999987542211
Q ss_pred eeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 720 LFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 720 ~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++.++|||||||++|||+||+.||...
T Consensus 253 ---~~~~~DiwslG~il~el~~g~~pf~~~ 279 (345)
T 3hko_A 253 ---YGPKCDAWSAGVLLHLLLMGAVPFPGV 279 (345)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ---CCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 578999999999999999999999543
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=322.26 Aligned_cols=203 Identities=14% Similarity=0.246 Sum_probs=169.4
Q ss_pred CCCCccceeecCCcceEEEEEEc--------CCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|...+.||+|+||.||+|+.. .+..||||++...... .+++.+|+++++++ +|||||++++++.. +
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~-~ 147 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ-D 147 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc-C
Confidence 56888899999999999999842 2468999999754332 46799999999999 99999999998765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..++||||+++|+|.+++....... .....+++.++..++.|++.||+|||+. +|+||||||+|||+
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEE
Confidence 67999999999999999998654210 1123599999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
++++.+||+|||+++.... ......+|..|+|||...... ++.++|||||||++|||+| |+.||.
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwslG~il~ellt~g~~p~~ 295 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRI---------YTHQSDVWSFGVLLWEIFTLGGSPYP 295 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCC---------CCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCC---------CCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999986532 223345678899999876543 5789999999999999999 999985
Q ss_pred CC
Q 004248 748 SS 749 (766)
Q Consensus 748 ~~ 749 (766)
..
T Consensus 296 ~~ 297 (382)
T 3tt0_A 296 GV 297 (382)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=318.38 Aligned_cols=208 Identities=21% Similarity=0.250 Sum_probs=173.7
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC---------HHHHHHHHHHHhhc-CCCCcccce
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK---------TEAYLLELDFFSKV-SHARLVPLL 595 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~---------~~~~~~E~~~l~~l-~H~niv~l~ 595 (766)
+......++|+..+.||+|+||.||+|+.. +|+.||||+++..... .+.+.+|+++++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 334445567999999999999999999964 7999999998754321 35688999999999 799999999
Q ss_pred eEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC
Q 004248 596 GHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675 (766)
Q Consensus 596 ~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~ 675 (766)
+++.. .+..|+||||+++|+|.+++.... .+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 167 ~~~~~-~~~~~lv~e~~~g~~L~~~l~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~ 235 (365)
T 2y7j_A 167 DSYES-SSFMFLVFDLMRKGELFDYLTEKV-------ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDD 235 (365)
T ss_dssp EEEEB-SSEEEEEECCCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECT
T ss_pred EEEee-CCEEEEEEEeCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECC
Confidence 97765 568999999999999999997543 389999999999999999999998 9999999999999999
Q ss_pred CCcEEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 676 KFEVRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 676 ~~~~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
++.+||+|||++..... ......+|+.|+|||...+...... ..++.++|||||||++|||+||+.||..
T Consensus 236 ~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~---~~~~~~~Di~slG~il~ell~g~~pf~~ 307 (365)
T 2y7j_A 236 NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETH---PGYGKEVDLWACGVILFTLLAGSPPFWH 307 (365)
T ss_dssp TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTS---CCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccC---cCCCchhhHHhHHHHHHHHHHCCCCCCC
Confidence 99999999999976632 3345678999999997643211000 0157899999999999999999999954
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=309.63 Aligned_cols=196 Identities=22% Similarity=0.311 Sum_probs=156.8
Q ss_pred CCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|... .+..||||++...... .+.+.+|+.++++++||||+++++++. ++..|+
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~l 92 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT--ENPVWI 92 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--SSSCEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc--cCccEE
Confidence 46888899999999999999853 2567999998653322 567999999999999999999999764 457899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 93 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~ 163 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRK------YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLS 163 (281)
T ss_dssp EEECCTTEEHHHHHHHTT------TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC----
T ss_pred EEecCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccc
Confidence 999999999999997543 2489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 688 CAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+..... .....++..|+|||...... ++.++|||||||++|||++ |+.||...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~ell~~g~~pf~~~ 221 (281)
T 1mp8_A 164 RYMEDSTYYKASKGKLPIKWMAPESINFRR---------FTSASDVWMFGVCMWEILMHGVKPFQGV 221 (281)
T ss_dssp ---------------CCGGGCCHHHHHHCC---------CSHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred cccCcccccccccCCCcccccChhhcccCC---------CCCccCchHHHHHHHHHHhcCCCCCCcC
Confidence 876332 22334567899999875433 4789999999999999997 99999643
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=332.07 Aligned_cols=195 Identities=15% Similarity=0.242 Sum_probs=168.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc---cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS---VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..++||+|+||.||+|+. .+++.||||++.... ...+.+.+|++++++++|||||++++++.. .+..|+||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv~ 100 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-SSSFYIVG 100 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEEEEEE
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-CCEEEEEE
Confidence 4688999999999999999995 579999999996532 236789999999999999999999998765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC---CCCcEEeccchh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD---DKFEVRLGSLSE 686 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~DFG~ 686 (766)
|||++|+|.+.+.... .+++.++..++.|++.||+|||+. +|+||||||+|||++ .++.+||+|||+
T Consensus 101 e~~~~~~L~~~~~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~ 170 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRK-------RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGL 170 (486)
T ss_dssp CCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSC
T ss_pred EcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCc
Confidence 9999999999987654 389999999999999999999998 999999999999995 456799999999
Q ss_pred hhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++..... .....||+.|+|||.+.+ . ++.++||||+||++|||++|+.||...
T Consensus 171 a~~~~~~~~~~~~~gt~~y~aPE~~~~-~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 225 (486)
T 3mwu_A 171 STCFQQNTKMKDRIGTAYYIAPEVLRG-T---------YDEKCDVWSAGVILYILLSGTPPFYGK 225 (486)
T ss_dssp TTTBCCC----CCTTGGGGCCGGGGGS-C---------CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CeECCCCCccCCCcCCCCCCCHHHhCC-C---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9866332 345578999999998753 2 478999999999999999999999543
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=318.14 Aligned_cols=210 Identities=18% Similarity=0.236 Sum_probs=170.7
Q ss_pred HHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec----
Q 004248 528 QLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER---- 601 (766)
Q Consensus 528 ~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~---- 601 (766)
++....++|+..+.||+|+||.||+|+. .+|+.||||++.......+++.+|+++++++ +||||+++++++...
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~ 97 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence 3344567899999999999999999995 5789999999977665677899999999999 899999999988653
Q ss_pred -CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 602 -ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 602 -~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
.+..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~k 169 (326)
T 2x7f_A 98 MDDQLWLVMEFCGAGSVTDLIKNTKG-----NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVK 169 (326)
T ss_dssp CCCEEEEEEECCTTEEHHHHHHHSGG-----GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEE
T ss_pred ccceEEEEEEcCCCCcHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEE
Confidence 3578999999999999999976432 3489999999999999999999998 999999999999999999999
Q ss_pred eccchhhhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||+++..... .....+|..|+|||........... ++.++|||||||++|||+||+.||...
T Consensus 170 l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~Di~slG~il~~l~~g~~p~~~~ 237 (326)
T 2x7f_A 170 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDAT----YDFKSDLWSLGITAIEMAEGAPPLCDM 237 (326)
T ss_dssp ECCCTTTC-------------CCGGGCCHHHHC------------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred EeeCcCceecCcCccccccccCCccccChhhhccccccCcC----CCccchHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999765322 2345689999999987532211111 578999999999999999999999543
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=307.94 Aligned_cols=196 Identities=14% Similarity=0.166 Sum_probs=169.8
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||+|... +++.||+|.+..... ..+.+.+|++++++++||||+++++++.+ ++..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv 93 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-NDFVFVV 93 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc-CCEEEEE
Confidence 56888999999999999999964 688999999975432 25678999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.... .+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 94 ~e~~~~~~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 163 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLAT 163 (294)
T ss_dssp EECCTTCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCce
Confidence 99999999999987543 389999999999999999999998 99999999999999999999999999997
Q ss_pred hcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 164 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~l~~g~~p~~~~ 218 (294)
T 2rku_A 164 KVEYDGERKKVLCGTPNYIAPEVLSKKG---------HSFEVDVWSIGCIMYTLLVGKPPFETS 218 (294)
T ss_dssp ECCSTTCCBCCCCSCCSSCCHHHHTTSC---------BCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ecccCccccccccCCCCcCCcchhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 653 2233456889999999875443 478999999999999999999999643
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=323.61 Aligned_cols=202 Identities=18% Similarity=0.179 Sum_probs=164.8
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcC--CCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVS--HARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|...+++.||||++...... .+++.+|+++|++++ |||||++++++.. ++..|+|
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-~~~~~lv 134 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-DQYIYMV 134 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-CCEEEEE
Confidence 348889999999999999999878999999999765433 467999999999996 5999999998776 5679999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|| +.+|+|.+++.+.. .+++.++..++.||+.||+|||+. +|+||||||+|||++ ++.+||+|||+++
T Consensus 135 ~E-~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~ 202 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK-------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIAN 202 (390)
T ss_dssp EE-CCSEEHHHHHHHCS-------SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSC
T ss_pred Ee-cCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccc
Confidence 99 56789999998654 389999999999999999999998 999999999999996 5899999999998
Q ss_pred hcCCC-----CccceeeecccCCCCCCCCceeee--eeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD-----AHQSRITRLLRLPQSSEQGSSGMV--IYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~--~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... ....+||+.|+|||.+........ .....++.++|||||||++|||++|+.||..
T Consensus 203 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~ 269 (390)
T 2zmd_A 203 QMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 269 (390)
T ss_dssp CC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred cccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchh
Confidence 66322 234578999999998754211000 0001268999999999999999999999954
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=306.99 Aligned_cols=197 Identities=19% Similarity=0.273 Sum_probs=157.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc-----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|... |+.||||++..... ..+.+.+|++++++++||||+++++++.. ++..++|
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv 84 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLK-EPNLCLV 84 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECC-C--CEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEec-CCceEEE
Confidence 56888999999999999999965 88999999865332 14679999999999999999999998765 5678999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC--------CCcEE
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD--------KFEVR 680 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~--------~~~~k 680 (766)
|||+++|+|.+++..+ .+++..+..++.|++.||+|||+....+|+||||||+||+++. ++.+|
T Consensus 85 ~e~~~~~~L~~~~~~~--------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~k 156 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILK 156 (271)
T ss_dssp EECCTTEEHHHHHTSS--------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEE
T ss_pred EEcCCCCCHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceE
Confidence 9999999999998532 3899999999999999999999983333999999999999986 67899
Q ss_pred eccchhhhhcCCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQGGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||+++..... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 157 l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~~l~~l~~g~~p~~~~ 217 (271)
T 3dtc_A 157 ITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASM---------FSKGSDVWSYGVLLWELLTGEVPFRGI 217 (271)
T ss_dssp ECCCCC-------------CCGGGSCHHHHHHCC---------CSHHHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred EccCCcccccccccccCCCCccceeCHHHhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999865332 33456899999999875433 478999999999999999999999543
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=304.35 Aligned_cols=197 Identities=15% Similarity=0.219 Sum_probs=164.1
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||+|+.. +|+.||||.+..... ..+.+.+|++++++++||||+++++++.. ++..++|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv 89 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST-PTDFFMV 89 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec-CCeEEEE
Confidence 57888999999999999999964 799999999965432 25679999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 90 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~ 159 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-------RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSN 159 (276)
T ss_dssp EECCCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGG
T ss_pred EeccCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeeccccc
Confidence 99999999999997653 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....++..|+|||......+ .+.++|||||||++|||++|+.||...
T Consensus 160 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~~l~~l~~g~~p~~~~ 214 (276)
T 2h6d_A 160 MMSDGEFLRTSCGSPNYAAPEVISGRLY--------AGPEVDIWSCGVILYALLCGTLPFDDE 214 (276)
T ss_dssp CCCC-------------CCTGGGTTSCC--------CHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccCCCcceecccCCccccCHHHHcCCCC--------CCccchHHHHHHHHHHHHhCCCCCCCC
Confidence 76332 234568899999998765432 368999999999999999999999643
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=306.45 Aligned_cols=196 Identities=15% Similarity=0.167 Sum_probs=167.5
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc-------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV-------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|+.. +|+.||||.+..... ..+.+.+|++++++++||||+++++++.. .+..
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 83 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN-KTDV 83 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC-CCeE
Confidence 45888999999999999999964 689999999975432 25789999999999999999999998765 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC----cEEe
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF----EVRL 681 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~kl 681 (766)
++||||+++|+|.+++.+.. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl 153 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-------SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKL 153 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEE
T ss_pred EEEEeecCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEE
Confidence 99999999999999997643 389999999999999999999998 999999999999999877 8999
Q ss_pred ccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||+++.... ......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 154 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 214 (283)
T 3bhy_A 154 IDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEP---------LGLEADMWSIGVITYILLSGASPFLGE 214 (283)
T ss_dssp CCCTTCEECC--------CCCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EecccceeccCCCcccccCCCcCccCcceecCCC---------CCcchhhhhHHHHHHHHHHCCCCCCCc
Confidence 99999986532 233456889999999875543 478999999999999999999999543
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=318.12 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=162.8
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC------HHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK------TEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
...++|+..+.||+|+||.||+|+. .+|+.||||++...... .+.+.+|++++++++|||||++++++.. .+
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~ 85 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH-KS 85 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-TT
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee-CC
Confidence 3457899999999999999999995 56899999999653221 2468899999999999999999997765 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++||||+++ +|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 86 ~~~lv~e~~~~-~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~D 155 (346)
T 1ua2_A 86 NISLVFDFMET-DLEVIIKDNS------LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLAD 155 (346)
T ss_dssp CCEEEEECCSE-EHHHHHTTCC------SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC
T ss_pred ceEEEEEcCCC-CHHHHHHhcC------cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEe
Confidence 79999999985 8998886543 2488899999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+++.... ......+|+.|+|||....... ++.++|||||||++|||++|++||..
T Consensus 156 fg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~~~~~ 215 (346)
T 1ua2_A 156 FGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM--------YGVGVDMWAVGCILAELLLRVPFLPG 215 (346)
T ss_dssp CGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSC--------CCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cccceeccCCcccCCcccccccccCchHhhCCCC--------CCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 999987632 2344578999999998754321 47899999999999999999988854
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=311.96 Aligned_cols=195 Identities=20% Similarity=0.297 Sum_probs=164.5
Q ss_pred CCCCccceeecCCcceEEEEEEc-CC-------cEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GG-------IPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g-------~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
++|...+.||+|+||.||+|+.. ++ ..||+|.+...... .+++.+|++++++++||||+++++++.. ++.
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~ 86 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVC-GDE 86 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC-TTC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe-CCC
Confidence 46888899999999999999843 34 57999999655433 6789999999999999999999998765 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc------
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE------ 678 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~------ 678 (766)
.++||||+++|+|.+++.+.. ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~ 157 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNK------NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNP 157 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTG------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBC
T ss_pred CEEEEECCCCCCHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccccccc
Confidence 899999999999999997643 2489999999999999999999998 9999999999999998887
Q ss_pred --EEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 679 --VRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 679 --~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+||+|||+++..... ....+|..|+|||....... ++.++|||||||++|||+||..|+.
T Consensus 158 ~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~~~~ 219 (289)
T 4fvq_A 158 PFIKLSDPGISITVLPK-DILQERIPWVPPECIENPKN--------LNLATDKWSFGTTLWEICSGGDKPL 219 (289)
T ss_dssp CEEEECCCCSCTTTSCH-HHHHHTTTTSCHHHHHCGGG--------CCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred ceeeeccCcccccccCc-cccCCcCcccCHHHhCCCCC--------CCchhHHHHHHHHHHHHHcCCCCCc
Confidence 999999998765322 23457888999998754221 5789999999999999999665554
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=313.92 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=168.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEec-CCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMER-ENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~-~~~~~lV~E 610 (766)
++|+..+.||+|+||.||+|+. .+++.||||+++.. ..+.+.+|++++++++ ||||+++++++... ....++|||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e 113 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE 113 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc--chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEe
Confidence 5688899999999999999984 67899999998643 3578999999999997 99999999987653 346899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG~a~~ 689 (766)
|+++|+|.+++. .+++.++..++.|++.||+|||+. +|+||||||+|||++.++ .+||+|||+++.
T Consensus 114 ~~~~~~l~~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~ 180 (330)
T 3nsz_A 114 HVNNTDFKQLYQ----------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF 180 (330)
T ss_dssp CCCCCCHHHHGG----------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred ccCchhHHHHHH----------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceE
Confidence 999999999884 278999999999999999999998 999999999999999776 899999999986
Q ss_pred cC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 690 QG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 690 ~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
.. .......+|+.|+|||....... ++.++|||||||++|||+||+.||......
T Consensus 181 ~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~DiwslG~il~~ll~g~~p~~~~~~~ 237 (330)
T 3nsz_A 181 YHPGQEYNVRVASRYFKGPELLVDYQM--------YDYSLDMWSLGCMLASMIFRKEPFFHGHDN 237 (330)
T ss_dssp CCTTCCCCSCCSCGGGCCHHHHTTCCC--------CCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred cCCCCccccccccccccChhhhcCCCc--------CCchhhHHHHHHHHHHHHhCCCCcccCCch
Confidence 53 23345578999999998754222 578999999999999999999999655443
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=311.13 Aligned_cols=197 Identities=21% Similarity=0.331 Sum_probs=161.0
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|... |+.||||.++... ..+++.+|++++++++||||+++++++.+.++..++||||++
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~ 98 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 98 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh-HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCC
Confidence 56888999999999999999864 8899999986543 456799999999999999999999987765557899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.+... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 99 ~~~L~~~l~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~ 170 (278)
T 1byg_A 99 KGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 170 (278)
T ss_dssp TEEHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred CCCHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc
Confidence 9999999975431 2378999999999999999999998 9999999999999999999999999999876554
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 171 ~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~t~g~~p~~~~ 218 (278)
T 1byg_A 171 QDTGKLPVKWTAPEALREKK---------FSTKSDVWSFGILLWEIYSFGRVPYPRI 218 (278)
T ss_dssp -----CCTTTSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred ccCCCccccccCHHHhCCCC---------CCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence 44556788899999875433 4789999999999999998 99998543
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=316.31 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=168.1
Q ss_pred HhCCCCccceeecCCcceEEEEEE------cCCcEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
..++|...+.||+|+||.||+|.. .+++.||||.+..... ..+.+.+|+++++++ +||||+++++++.. +
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-~ 121 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL-S 121 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee-C
Confidence 346788899999999999999985 2466899999975432 256899999999999 89999999998765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC----------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCC
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE----------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV 666 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~----------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDl 666 (766)
+..++||||+++|+|.+++....... .....++|.++..++.|++.||+|||+. +|+||||
T Consensus 122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Di 198 (344)
T 1rjb_A 122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDL 198 (344)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTC
T ss_pred CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCC
Confidence 68999999999999999997643210 0113489999999999999999999998 9999999
Q ss_pred CCCCeeeCCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 667 QASSILLDDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 667 Kp~NILl~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
||+||+++.++.+||+|||+++...... ....+|..|+|||...... ++.++|||||||++|||+|
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~t 269 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGI---------YTIKSDVWSYGILLWEIFS 269 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHTT
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCC---------CChhHhHHHHHHHHHHHHc
Confidence 9999999999999999999998653221 2345677899999775433 4789999999999999998
Q ss_pred -CCCCCCCCc
Q 004248 742 -NNHLNLSSR 750 (766)
Q Consensus 742 -G~~p~~~~~ 750 (766)
|+.||....
T Consensus 270 ~g~~p~~~~~ 279 (344)
T 1rjb_A 270 LGVNPYPGIP 279 (344)
T ss_dssp TSCCSSTTCC
T ss_pred CCCCCcccCC
Confidence 999995543
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=309.83 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=163.3
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|...+.||+|+||.||+|.. .+++.||||++...... .+++.+|++++++++||||+++++++.. ++..|+
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-~~~~~l 111 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-DGQLYV 111 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-TTEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-CCeEEE
Confidence 47899999999999999999995 47899999999754322 4678999999999999999999998876 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 112 v~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~ 181 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQG-------PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIA 181 (309)
T ss_dssp EEECCCCEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-
T ss_pred EEEecCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccC
Confidence 999999999999997653 389999999999999999999998 9999999999999999999999999998
Q ss_pred hhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+..... .....++..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 238 (309)
T 2h34_A 182 SATTDEKLTQLGNTVGTLYYMAPERFSESH---------ATYRADIYALTCVLYECLTGSPPYQGD 238 (309)
T ss_dssp ---------------CCGGGCCGGGTCC-------------CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred ccccccccccccccCCCcCccCHHHHcCCC---------CCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence 765322 23446889999999876543 478999999999999999999999643
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=312.43 Aligned_cols=204 Identities=18% Similarity=0.264 Sum_probs=168.8
Q ss_pred hCCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 604 (766)
.++|...+.||+|+||.||+|.. .+++.||||++...... .+++.+|++++++++|||||++++++.+ ++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~ 100 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQ-DGP 100 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEec-CCc
Confidence 35688889999999999999984 34589999999754322 4679999999999999999999997765 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCC-----------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCC
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTE-----------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQ 667 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~-----------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlK 667 (766)
.++||||+++|+|.+++....... .....+++.++..++.|++.||+|||+. +|+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccc
Confidence 999999999999999997643210 0113489999999999999999999998 99999999
Q ss_pred CCCeeeCCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-
Q 004248 668 ASSILLDDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF- 741 (766)
Q Consensus 668 p~NILl~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt- 741 (766)
|+||++++++.+||+|||+++..... .....++..|+|||...... ++.++|||||||++|||+|
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~t~ 248 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHI---------YTTQSDVWSFGVLLWEIVTL 248 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTT
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCC---------cCchhhHHHHHHHHHHHHhC
Confidence 99999999999999999999765322 22334577899999875432 5789999999999999999
Q ss_pred CCCCCCCC
Q 004248 742 NNHLNLSS 749 (766)
Q Consensus 742 G~~p~~~~ 749 (766)
|+.||...
T Consensus 249 g~~p~~~~ 256 (314)
T 2ivs_A 249 GGNPYPGI 256 (314)
T ss_dssp SCCSSTTC
T ss_pred CCCCCCCC
Confidence 99999543
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=331.88 Aligned_cols=196 Identities=16% Similarity=0.234 Sum_probs=167.3
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc--------------cCHHHHHHHHHHHhhcCCCCcccceeE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS--------------VKTEAYLLELDFFSKVSHARLVPLLGH 597 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~--------------~~~~~~~~E~~~l~~l~H~niv~l~~~ 597 (766)
.++|...++||+|+||.||+|+. .+++.||||++.... ...+++.+|++++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 46799999999999999999995 568999999997543 124679999999999999999999998
Q ss_pred EEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 598 CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 598 ~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
+.+ ++..|+|||||++|+|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++
T Consensus 115 ~~~-~~~~~lv~e~~~gg~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~ 183 (504)
T 3q5i_A 115 FED-KKYFYLVTEFYEGGELFEQIINRH-------KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKN 183 (504)
T ss_dssp EEC-SSEEEEEEECCTTCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTT
T ss_pred EEc-CCEEEEEEecCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCC
Confidence 765 568999999999999999997654 389999999999999999999998 999999999999999776
Q ss_pred ---cEEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 ---EVRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ---~~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+||+|||+++.... ......||+.|+|||.+.. . ++.++||||+||++|||++|+.||...
T Consensus 184 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 250 (504)
T 3q5i_A 184 SLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-K---------YNEKCDVWSCGVIMYILLCGYPPFGGQ 250 (504)
T ss_dssp CCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-C---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhcc-C---------CCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 699999999987643 2345678999999998642 2 478999999999999999999999543
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=314.42 Aligned_cols=196 Identities=14% Similarity=0.171 Sum_probs=170.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||+|.. .+++.||+|.+..... ..+.+.+|++++++++||||+++++++.+ .+..|+|
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv 119 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-NDFVFVV 119 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CCeEEEE
Confidence 5688899999999999999995 4688999999975432 25678999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++++|.+++.... .+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 120 ~e~~~~~~L~~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 189 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLAT 189 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EecCCCCCHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCce
Confidence 99999999999987643 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 190 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 244 (335)
T 2owb_A 190 KVEYDGERKKVLCGTPNYIAPEVLSKKG---------HSFEVDVWSIGCIMYTLLVGKPPFETS 244 (335)
T ss_dssp ECCSTTCCBCCCCSCCSSCCHHHHHTSC---------BCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ecccCcccccccCCCccccCHHHhccCC---------CCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence 653 2233456889999999875443 468999999999999999999999643
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=305.97 Aligned_cols=199 Identities=17% Similarity=0.251 Sum_probs=167.1
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc---CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV---KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
.++|+..+.||+|+||.||+|+.. +++.||||++..... ...++.+|+..+.++ +||||+++++++.+ ++..++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~-~~~~~l 88 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE-DDHMLI 88 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-TTEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-CCeEEE
Confidence 456889999999999999999964 799999999975432 256789999999999 99999999998876 568999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-----------
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK----------- 676 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~----------- 676 (766)
||||+++|+|.+++..... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~ 162 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYR---IMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGD 162 (289)
T ss_dssp EEECCTTCBHHHHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC-------------
T ss_pred EEEecCCCcHHHHHHhhcc---cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccc
Confidence 9999999999999975421 113489999999999999999999998 99999999999999844
Q ss_pred --------CcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 677 --------FEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 677 --------~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
..+||+|||.++...... ...+|..|+|||....... +++++|||||||++|||++|++|+.
T Consensus 163 ~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~gt~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~~~~~~~ 232 (289)
T 1x8b_A 163 EDDWASNKVMFKIGDLGHVTRISSPQ-VEEGDSRFLANEVLQENYT--------HLPKADIFALALTVVCAAGAEPLPR 232 (289)
T ss_dssp -------CCCEEECCCTTCEETTCSC-CCCCCGGGCCHHHHTTCCT--------THHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred cccccCCceEEEEcccccccccCCcc-ccCCCccccChhHhcCCCC--------CCchhhHHHHHHHHHHHhcCCCCCc
Confidence 479999999998764432 3458999999998764322 4689999999999999999997764
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=327.09 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=160.1
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecC---C--cEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERE---N--EKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~---~--~~~lV 608 (766)
+|+..++||+|+||.||+|+. .+|+.||||++..... .+.+|+++|++++|||||++++++.... + ..++|
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv 131 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 131 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEE
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEee
Confidence 578889999999999999996 5699999999865432 2347999999999999999999876421 1 36799
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-CcEEeccchhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-FEVRLGSLSEV 687 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFG~a 687 (766)
|||+++ +|.+.+..... ....+++..+..++.||++||+|||+. +|+||||||+|||++.+ +.+||+|||++
T Consensus 132 ~e~~~~-~l~~~~~~~~~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 132 LDYVPE-TVYRVARHYSR---AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EECCCE-EHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred hhcccc-cHHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhh
Confidence 999985 77776653111 113589999999999999999999997 99999999999999965 67899999999
Q ss_pred hhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+... .......+|+.|+|||.+..... ++.++|||||||++|||++|+.||..
T Consensus 205 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwSlG~il~ell~G~~pf~~ 259 (420)
T 1j1b_A 205 KQLVRGEPNVSYICSRYYRAPELIFGATD--------YTSSIDVWSAGCVLAELLLGQPIFPG 259 (420)
T ss_dssp EECCTTCCCCSCCSCTTSCCHHHHTTCSS--------CCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred hhcccCCCceeeeeCCCcCCHHHHcCCCC--------CCchhhhHHHHHHHHHHHhCCCCCCC
Confidence 8652 23445678999999998754321 57899999999999999999999954
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=312.17 Aligned_cols=204 Identities=22% Similarity=0.294 Sum_probs=169.9
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|...+.||+|+||.||+|+. .+++.||||++..... ..+.+.+|+++++++ +||||+++++++.. ++.
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-~~~ 101 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI-GGP 101 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSS
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec-CCC
Confidence 5688899999999999999984 3578999999975443 256799999999999 99999999998765 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCC-----------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT-----------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~-----------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
.++||||+++|+|.+++...... ......+++.++..++.|++.||+|||+. +|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEE
Confidence 89999999999999999765321 01123589999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
+.++.+||+|||+++...... ....+|..|+|||...... ++.++|||||||++|||+| |+.||.
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~ 249 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV---------YTFESDVWSYGIFLWELFSLGSSPYP 249 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCC---------CChHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999998764322 2345677899999775433 5789999999999999999 999985
Q ss_pred CCc
Q 004248 748 SSR 750 (766)
Q Consensus 748 ~~~ 750 (766)
...
T Consensus 250 ~~~ 252 (313)
T 1t46_A 250 GMP 252 (313)
T ss_dssp TCC
T ss_pred ccc
Confidence 443
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=306.70 Aligned_cols=195 Identities=13% Similarity=0.022 Sum_probs=167.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++.... ..+.+.+|+++++++ +|+|++++++++.. +...++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-~~~~~lv~e~ 87 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-GLHNVLVIDL 87 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-TTEEEEEEEC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHhcCCCCCeEEeecCC-CceeEEEEEe
Confidence 5688999999999999999994 679999999986443 234688999999999 79999999997765 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc-----EEeccchh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE-----VRLGSLSE 686 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~-----~kl~DFG~ 686 (766)
+ +|+|.+++...+. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+
T Consensus 88 ~-~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~ 157 (298)
T 1csn_A 88 L-GPSLEDLLDLCGR------KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM 157 (298)
T ss_dssp C-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTT
T ss_pred c-CCCHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcc
Confidence 9 8999999976432 489999999999999999999998 9999999999999988776 99999999
Q ss_pred hhhcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++..... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~g~~pf~~~ 221 (298)
T 1csn_A 158 VKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE---------QSRRDDLEALGHVFMYFLRGSLPWQGL 221 (298)
T ss_dssp CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred ccccccccccccccccCccCCCCCcccCCchhhcCCC---------CChHHHHHHHHHHHHHHHcCCCCcchh
Confidence 9865322 23456899999999876544 478999999999999999999999653
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=309.71 Aligned_cols=200 Identities=20% Similarity=0.348 Sum_probs=172.2
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|+..+.||+|+||.||+|... ++..||||.+.......+++.+|++++++++||||+++++++.. ++..++||||
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~ 90 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEF 90 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSEEEEEEC
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc-CCCEEEEEEc
Confidence 456888899999999999999964 58899999997666557789999999999999999999998765 5679999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 91 ~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~ 162 (288)
T 3kfa_A 91 MTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162 (288)
T ss_dssp CTTEEHHHHHHHCCT-----TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSC
T ss_pred CCCCcHHHHHHhccc-----CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceecc
Confidence 999999999976433 3589999999999999999999998 99999999999999999999999999998764
Q ss_pred CCC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 692 GDA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 692 ~~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
... ....+|..|+|||...... ++.++||||+||++|||++ |+.||....
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~ll~~g~~p~~~~~ 217 (288)
T 3kfa_A 163 GDTYTAHAGAKFPIKWTAPESLAYNK---------FSIKSDVWAFGVLLWEIATYGMSPYPGID 217 (288)
T ss_dssp SSSSEEETTEEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred CCccccccCCccccCcCChhhhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 332 2234567899999875443 4789999999999999999 999985433
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=315.20 Aligned_cols=200 Identities=19% Similarity=0.204 Sum_probs=171.2
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC------------------HHHHHHHHHHHhhcCCCCcccc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK------------------TEAYLLELDFFSKVSHARLVPL 594 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~------------------~~~~~~E~~~l~~l~H~niv~l 594 (766)
.++|...+.||+|+||.||+|.. +|+.||||++...... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46799999999999999999998 8999999999754322 1789999999999999999999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhh------hhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhcc-CCCCCeEecCCC
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSS------LYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH-ECTLPFVHRDVQ 667 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~------l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~iiHrDlK 667 (766)
++++.. ++..++||||+++|+|.++ +.+.. ...+++..+..++.|++.||+|||+ . +|+|||||
T Consensus 109 ~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~ 179 (348)
T 2pml_X 109 EGIITN-YDEVYIIYEYMENDSILKFDEYFFVLDKNY-----TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVK 179 (348)
T ss_dssp SEEEES-SSEEEEEEECCTTCBSSEESSSEESSCSSS-----CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCC
T ss_pred EEEEee-CCeEEEEEeccCCCcHHHHHHHhhhhhhcc-----ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCC
Confidence 998876 5689999999999999999 54321 2459999999999999999999998 6 99999999
Q ss_pred CCCeeeCCCCcEEeccchhhhhcCC-CCccceeeecccCCCCCCCCceeeeeeeeeccc-ccceecchHHHHHHhcCCCC
Q 004248 668 ASSILLDDKFEVRLGSLSEVCAQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFT-IFHIYFHGNPLFSAIFNNHL 745 (766)
Q Consensus 668 p~NILl~~~~~~kl~DFG~a~~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~-~~Dv~s~Gvvl~elltG~~p 745 (766)
|+||+++.++.+||+|||.++.... ......+|..|+|||....... ++. ++|||||||++|||+||+.|
T Consensus 180 p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~~Di~slG~il~~l~~g~~p 251 (348)
T 2pml_X 180 PSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESS--------YNGAKVDIWSLGICLYVMFYNVVP 251 (348)
T ss_dssp GGGEEECTTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCC--------EEHHHHHHHHHHHHHHHHHHSSCS
T ss_pred hHhEEEcCCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCC--------CCcchhhHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999987532 3344568999999998865421 234 99999999999999999999
Q ss_pred CCCCc
Q 004248 746 NLSSR 750 (766)
Q Consensus 746 ~~~~~ 750 (766)
|....
T Consensus 252 f~~~~ 256 (348)
T 2pml_X 252 FSLKI 256 (348)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 96543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=307.65 Aligned_cols=275 Identities=18% Similarity=0.266 Sum_probs=213.8
Q ss_pred cCCHHHHHHHHHHHHhCCCC----CCCC----CCCCCCCCCccceeecCCCEEEEEcCCCCcCCCCCCCCccchhhhccC
Q 004248 45 LSSRTELAALFELRSSLGLR----RRDW----PRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNL 116 (766)
Q Consensus 45 ~~~~~~~~aLl~~k~~l~~~----~~~W----~~~~~~C~~W~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l 116 (766)
.+..+|++||++||+++... ..+| ....+ ||.|.|+.|+... . .-.-...
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~-~~~~~g~~~~~~~------------------~---~l~~~~~ 80 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQ-IETRTGRALKATA------------------D---LLEDATQ 80 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTT-SCCSHHHHHHHHH------------------H---HHHHHTS
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhccccccccc-ccccCCcchhhhH------------------H---HHhcccc
Confidence 34567999999999987422 2467 23334 4489999995100 0 0011234
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++++.|++++|.+. .+|+.++. +++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 66778888888876 78888776 888899999988888 78888888888999999988888 7788888888899999
Q ss_pred ccCCCCCCCCCcccCC---------CCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q 004248 197 LSRNSLTGNIPTSFGL---------LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDL 267 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 267 (766)
|++|++.+.+|..+.. +++|++|+|++|.++ .+|..++++++|++|+|++|++++ +|..++.+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9888888888887654 888888888888887 778888888888888888888875 56668888888888
Q ss_pred EccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCC
Q 004248 268 DLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347 (766)
Q Consensus 268 ~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 347 (766)
+|++|++.+.+|..++++++|++|++++|.+.+.+|..+ ..+++|+.|+|++|++.+.+|..++++++|+.+++..|.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 888888888888888888888888888888877777653 6777888888888888888888888888888888877665
Q ss_pred C
Q 004248 348 T 348 (766)
Q Consensus 348 ~ 348 (766)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=316.57 Aligned_cols=205 Identities=20% Similarity=0.301 Sum_probs=161.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHH--HhhcCCCCcccceeEEEe----cCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDF--FSKVSHARLVPLLGHCME----RENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~--l~~l~H~niv~l~~~~~~----~~~~~~l 607 (766)
++|+..+.||+|+||.||+|+. +++.||||++.... .+.+..|.++ +..++||||+++++++.. .....++
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~l 89 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN--RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLL 89 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc--hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEE
Confidence 5788899999999999999976 68899999997543 3344445444 556899999999975532 1235789
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC------CCCeEecCCCCCCeeeCCCCcEEe
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC------TLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
||||+++|+|.+++.... .+|..+..++.|+++||+|||+.+ .++|+||||||+|||++.++.+||
T Consensus 90 v~e~~~~g~L~~~l~~~~--------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL 161 (336)
T 3g2f_A 90 VMEYYPNGSLXKYLSLHT--------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVI 161 (336)
T ss_dssp EECCCTTCBHHHHHHHCC--------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEE
T ss_pred EEecCCCCcHHHHHhhcc--------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEE
Confidence 999999999999996542 589999999999999999999863 238999999999999999999999
Q ss_pred ccchhhhhcCCC-----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 682 GSLSEVCAQGGD-----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 682 ~DFG~a~~~~~~-----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+|||+++..... .....||..|+|||...+...... ...++.++|||||||++|||+||+.||+...
T Consensus 162 ~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~--~~~~~~~~DiwslG~il~ell~g~~p~~~~~ 239 (336)
T 3g2f_A 162 SDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRD--XESALKQVDMYALGLIYWEIFMRCTDLFPGE 239 (336)
T ss_dssp CCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGG--HHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred eeccceeecccccccCccccccccccCCCccceeCchhhcCCccccc--ccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence 999999765321 123468999999998765321100 0015789999999999999999988886544
Q ss_pred c
Q 004248 751 F 751 (766)
Q Consensus 751 ~ 751 (766)
.
T Consensus 240 ~ 240 (336)
T 3g2f_A 240 S 240 (336)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=337.82 Aligned_cols=197 Identities=20% Similarity=0.313 Sum_probs=170.5
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++|+..+.||+|+||.||+|...++..||||+++......++|.+|+++|++++|||||++++++.+ +..|+|||||
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~--~~~~lv~e~~ 343 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEYM 343 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECCC
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee--ccceEeeehh
Confidence 35678889999999999999999888899999998766667889999999999999999999998754 5789999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.++++.... ..+++.++..++.||+.||+|||++ +||||||||+|||+++++.+||+|||+++....
T Consensus 344 ~~gsL~~~l~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 415 (535)
T 2h8h_A 344 SKGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED 415 (535)
T ss_dssp TTEEHHHHHSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCC
T ss_pred cCCcHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCC
Confidence 99999999975321 2489999999999999999999998 999999999999999999999999999986532
Q ss_pred C----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 693 D----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 693 ~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
. .....++..|+|||.+.... ++.++|||||||++|||+| |+.||..
T Consensus 416 ~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~sDvwSlGv~l~el~t~g~~P~~~ 467 (535)
T 2h8h_A 416 NEYTARQGAKFPIKWTAPEAALYGR---------FTIKSDVWSFGILLTELTTKGRVPYPG 467 (535)
T ss_dssp HHHHTTCSTTSCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHTTTTCCSSTT
T ss_pred CceecccCCcCcccccCHHHhccCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 1 12234567899999875443 5789999999999999999 9999954
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=332.66 Aligned_cols=195 Identities=15% Similarity=0.246 Sum_probs=169.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++|||||++++++.+ .+..|+|
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv 104 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-KGYFYLV 104 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-CCEEEEE
Confidence 4688899999999999999995 4799999999975432 36789999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccch
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLS 685 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG 685 (766)
|||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+|||+ +.++.+||+|||
T Consensus 105 ~e~~~~~~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg 174 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-------RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFG 174 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTT
T ss_pred EecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeee
Confidence 99999999999997654 389999999999999999999998 99999999999999 567899999999
Q ss_pred hhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....+|+.|+|||.+.+ . ++.++||||+||++|||++|+.||...
T Consensus 175 ~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 230 (484)
T 3nyv_A 175 LSTHFEASKKMKDKIGTAYYIAPEVLHG-T---------YDEKCDVWSTGVILYILLSGCPPFNGA 230 (484)
T ss_dssp HHHHBCCCCSHHHHTTGGGTCCHHHHHT-C---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eeEEcccccccccCCCCccccCceeecC-C---------CCCcceeHHHHHHHHHHHHCCCCCCCC
Confidence 99876433 344578999999998743 2 478999999999999999999999543
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=323.53 Aligned_cols=199 Identities=9% Similarity=-0.014 Sum_probs=152.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhc--CCCCcccce-------eEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKV--SHARLVPLL-------GHCM 599 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l--~H~niv~l~-------~~~~ 599 (766)
.+|...+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|+++++.+ +|||||+++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 3478889999999999999995 5799999999987543 245678885544444 699988755 3332
Q ss_pred ecC----------------CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHH------HHHHHHHHHHhhhhccCC
Q 004248 600 ERE----------------NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITR------LKIAIGAAEGLSYLHHEC 657 (766)
Q Consensus 600 ~~~----------------~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~------~~i~~~ia~gL~yLH~~~ 657 (766)
... ...|+|||||+ |+|.+++...+. .+++..+ ..++.||+.||+|||++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~------~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~- 213 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF------VYVFRGDEGILALHILTAQLIRLAANLQSK- 213 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc------ccchhhhhhhhhHHHHHHHHHHHHHHHHHC-
Confidence 211 23799999999 899999986432 2455566 78889999999999998
Q ss_pred CCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHH
Q 004248 658 TLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLF 737 (766)
Q Consensus 658 ~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ 737 (766)
+||||||||+|||++.++.+||+|||+++..+.......+|+.|+|||.+...... ++.++|||||||++|
T Consensus 214 --~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~-------~~~~~DiwSlG~il~ 284 (371)
T 3q60_A 214 --GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTAT-------FTHALNAWQLGLSIY 284 (371)
T ss_dssp --TEEETTCSGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEE-------CCHHHHHHHHHHHHH
T ss_pred --CCccCcCCHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCC-------cCccccHHHHHHHHH
Confidence 99999999999999999999999999998776555455677999999988542211 589999999999999
Q ss_pred HHhcCCCCCCCC
Q 004248 738 SAIFNNHLNLSS 749 (766)
Q Consensus 738 elltG~~p~~~~ 749 (766)
||+||+.||...
T Consensus 285 elltg~~Pf~~~ 296 (371)
T 3q60_A 285 RVWCLFLPFGLV 296 (371)
T ss_dssp HHHHSSCSTTBC
T ss_pred HHHhCCCCCCCc
Confidence 999999999655
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=308.02 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=168.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEe-cCCcEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCME-RENEKFL 607 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~-~~~~~~l 607 (766)
.++|+..+.||+|+||.||+|+. .+|+.||+|++...... .+.+.+|++++++++||||+++++++.. ..+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 35788899999999999999995 57899999999764432 4679999999999999999999998764 3457899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC--CCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC--TLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
||||+++|+|.+++..... ....+++.++..++.|++.||+|||+.. ..+|+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTK---ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcc---cCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 9999999999999975321 1234899999999999999999999871 0129999999999999999999999999
Q ss_pred hhhhcCCCC---ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGDA---HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~~---~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.++...... ....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 219 (279)
T 2w5a_A 162 LARILNHDTSFAKTFVGTPYYMSPEQMNRMS---------YNEKSDIWSLGCLLYELCALMPPFTAF 219 (279)
T ss_dssp HHHHC---CHHHHHHHSCCTTCCHHHHHCC----------CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hheeeccccccccccCCCccccChHHhccCC---------CCchhhHHHHHHHHHHHHHCCCCCccc
Confidence 998764332 2346788999999875443 478999999999999999999999643
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.53 Aligned_cols=195 Identities=16% Similarity=0.224 Sum_probs=164.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|+. .++..||||++..... ..+.+.+|++++++++|||||+++++|.. .+..|+||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv~ 115 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-KRNYYLVM 115 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-CCEEEEEE
Confidence 4588899999999999999995 5789999999975432 25679999999999999999999998765 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEEeccchh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVRLGSLSE 686 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl~DFG~ 686 (766)
|||++|+|.+.+.... .+++.++..++.||+.||+|||+. +|+||||||+|||++.+ +.+||+|||+
T Consensus 116 e~~~~g~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~ 185 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-------KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGL 185 (494)
T ss_dssp ECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred ecCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCC
Confidence 9999999999987654 389999999999999999999998 99999999999999764 5599999999
Q ss_pred hhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
++.... ......+|+.|+|||.+.. . ++.++||||+||++|||++|+.||...
T Consensus 186 a~~~~~~~~~~~~~gt~~y~aPE~l~~-~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 240 (494)
T 3lij_A 186 SAVFENQKKMKERLGTAYYIAPEVLRK-K---------YDEKCDVWSIGVILFILLAGYPPFGGQ 240 (494)
T ss_dssp CEECBTTBCBCCCCSCTTTCCHHHHTT-C---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CeECCCCccccccCCCcCeeCHHHHcc-c---------CCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence 987643 2345678999999998642 2 478999999999999999999999543
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=306.42 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=166.4
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
..++|+..+.||+|+||.||+|+. .+++.||||.+..... .+++.+|++++++++|++++..++++...++..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc-chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence 457899999999999999999995 6789999998754432 34588999999999999999988888766778899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccchhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLSEV 687 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG~a 687 (766)
|+ +|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+|||+ ++++.+||+|||++
T Consensus 86 ~~-~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a 155 (296)
T 4hgt_A 86 LL-GPSLEDLFNFCS------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155 (296)
T ss_dssp CC-CCBHHHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTC
T ss_pred cc-CCCHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccc
Confidence 99 899999997543 2489999999999999999999998 99999999999999 78899999999999
Q ss_pred hhcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+..... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 218 (296)
T 4hgt_A 156 KKYRDARTHQHIPYRENKNLTGTARYASINTHLGIE---------QSRRDDLESLGYVLMYFNLGSLPWQGL 218 (296)
T ss_dssp EECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred eeccCcccCccCCCCcccccCCCccccchHHhcCCC---------CCchhHHHHHHHHHHHHhcCCCCCccc
Confidence 865322 12456899999999876544 478999999999999999999999643
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=317.99 Aligned_cols=197 Identities=18% Similarity=0.232 Sum_probs=167.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecC----CcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERE----NEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~ 605 (766)
.++|+..+.||+|+||.||+|+. .+++.||||++...... .+++.+|++++++++||||+++++++.... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 45789999999999999999985 57889999999753322 467999999999999999999999875432 368
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||++ |+|.+++... .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 106 ~iv~e~~~-~~L~~~l~~~--------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg 173 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ--------HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFG 173 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEcccC-cCHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCc
Confidence 99999998 5999998643 389999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....+|+.|+|||.+..... ++.++||||+||++|||+||+.||...
T Consensus 174 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwslG~il~ell~g~~pf~~~ 235 (364)
T 3qyz_A 174 LARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKG--------YTKSIDIWSVGCILAEMLSNRPIFPGK 235 (364)
T ss_dssp TCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCS--------CSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceEecCCCCCccccccccccccCCCCCHHhcCCCC--------CCcchhHHHHHHHHHHHHHCCCCCCCC
Confidence 99765321 234578999999997644321 578999999999999999999999544
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=311.60 Aligned_cols=202 Identities=20% Similarity=0.214 Sum_probs=167.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEec---CCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMER---ENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~---~~~~~lV 608 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++..... ..+.+.+|++++++++||||+++++++... ....++|
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 108 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL 108 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence 5688999999999999999995 6799999999865433 256799999999999999999999988632 2368999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++..... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 109 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~ 182 (317)
T 2buj_A 109 LPFFKRGTLWNEIERLKD---KGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMN 182 (317)
T ss_dssp EECCTTCBHHHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred EEeCCCCcHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcch
Confidence 999999999999975321 113589999999999999999999998 99999999999999999999999999886
Q ss_pred hcCCC------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 689 AQGGD------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 689 ~~~~~------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
..... .....+|..|+|||.......+. ++.++|||||||++|||++|+.||.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~------~~~~~Di~slG~il~el~~g~~p~~ 247 (317)
T 2buj_A 183 QACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCV------IDERTDVWSLGCVLYAMMFGEGPYD 247 (317)
T ss_dssp ESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEE------ECTHHHHHHHHHHHHHHHHSSCTTH
T ss_pred hcccccccccccccccccccccCCcccCCHhHhccCCCcC------CCchhhHHHHHHHHHHHHhCCCChh
Confidence 54211 01234688999999876544322 5789999999999999999999984
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=322.82 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=169.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC--------CCCcccceeEEEe---c
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS--------HARLVPLLGHCME---R 601 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~--------H~niv~l~~~~~~---~ 601 (766)
++|+..++||+|+||.||+|+. .+++.||||++.......+.+.+|++++++++ ||||+++++++.. .
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~ 116 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVN 116 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETT
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCC
Confidence 6799999999999999999984 67899999999765545678999999999996 7889999997762 2
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC----
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF---- 677 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~---- 677 (766)
....++||||+ +|+|.+.+.+... ..+++..+..|+.||+.||+|||+++ +|+||||||+|||++.++
T Consensus 117 ~~~~~lv~e~~-~~~l~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~ 188 (397)
T 1wak_A 117 GTHICMVFEVL-GHHLLKWIIKSNY-----QGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIR 188 (397)
T ss_dssp EEEEEEEECCC-CCBHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHH
T ss_pred CceEEEEEecc-CccHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhh
Confidence 34689999999 5677777755432 34899999999999999999999853 799999999999999775
Q ss_pred ---------------------------------------------cEEeccchhhhhcCCCCccceeeecccCCCCCCCC
Q 004248 678 ---------------------------------------------EVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQG 712 (766)
Q Consensus 678 ---------------------------------------------~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~ 712 (766)
.+||+|||+++..........+|+.|+|||.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~ 268 (397)
T 1wak_A 189 RLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGS 268 (397)
T ss_dssp HHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTS
T ss_pred hhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCC
Confidence 79999999998776666667889999999987654
Q ss_pred ceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 713 SSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 713 ~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. ++.++|||||||++|||+||+.||...
T Consensus 269 ~---------~~~~~DiwslG~il~elltg~~pf~~~ 296 (397)
T 1wak_A 269 G---------YNTPADIWSTACMAFELATGDYLFEPH 296 (397)
T ss_dssp C---------CCTHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred C---------CCcHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 4 478999999999999999999999643
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=317.80 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=158.8
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-----C
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-----N 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~ 603 (766)
.++|+..+.||+|+||.||+|.. .+++.||||++...... .+++.+|++++++++|||||++++++.... .
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 36799999999999999999985 57899999999754322 457899999999999999999999876432 2
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+||||++ |+|.+.+.. .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~---------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~D 170 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILD 170 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECC
T ss_pred ceEEEEEcCC-CCHHHHHhh---------ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEE
Confidence 6899999998 588888852 288999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++..+.. .....+|+.|+|||...... ++.++||||+||++|||+||+.||...
T Consensus 171 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~el~~g~~pf~~~ 229 (371)
T 2xrw_A 171 FGLARTAGTSFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGEMIKGGVLFPGT 229 (371)
T ss_dssp CCC----------------CTTCCHHHHTTCC---------CCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecccccccccccCCceecCCccCHHHhcCCC---------CCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999876432 34457899999999876543 478999999999999999999999543
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=312.76 Aligned_cols=205 Identities=16% Similarity=0.270 Sum_probs=156.0
Q ss_pred HhCCCCccceeecCCcceEEEEEEc-CC---cEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCC-
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE-GG---IPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMEREN- 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~- 603 (766)
..++|+..+.||+|+||.||+|+.. ++ ..||||.+..... ..+++.+|++++++++||||+++++++.....
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 3467999999999999999999854 33 3899999975432 25689999999999999999999998865321
Q ss_pred ----cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 604 ----EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 604 ----~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
..++||||+++|+|.+++...... .....+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIG-ENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhcc-ccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCE
Confidence 139999999999999999754321 1123589999999999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 680 RLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 680 kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
||+|||+++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ell~~g~~p~~~~ 243 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNL---------YTVHSDVWAFGVTMWEIMTRGQTPYAGI 243 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCC---------CCCccchhhHHHHHHHHHhCCCCCcccc
Confidence 99999999765322 12334567899999875443 4789999999999999999 89998543
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=307.76 Aligned_cols=198 Identities=19% Similarity=0.313 Sum_probs=157.7
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|...+.||+|+||.||+|+... .||||+++..... .+.|.+|++++++++||||+++++++. .+..++||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--~~~~~lv~ 98 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST--APQLAIVT 98 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSCEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc--CCccEEEE
Confidence 3568889999999999999998543 5999999754433 467999999999999999999999653 45689999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 99 e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~ 169 (289)
T 3og7_A 99 QWCEGSSLYHHLHASE------TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATE 169 (289)
T ss_dssp ECCCEEEHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC----
T ss_pred EecCCCcHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccc
Confidence 9999999999996543 2489999999999999999999998 999999999999999999999999999975
Q ss_pred cCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ......+|..|+|||.......+. ++.++|||||||++|||+||+.||...
T Consensus 170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~------~~~~~Di~slG~il~el~~g~~p~~~~ 228 (289)
T 3og7_A 170 KSRWSGSHQFEQLSGSILWMAPEVIRMQDSNP------YSFQSDVYAFGIVLYELMTGQLPYSNI 228 (289)
T ss_dssp --------------CCCTTCCHHHHC----CC------SCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred cccccccccccccCCCccccCchhhcccCCCC------CCcccchHHHHHHHHHHHHCCCCcccc
Confidence 532 123346899999999875322221 578999999999999999999999643
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=308.09 Aligned_cols=195 Identities=22% Similarity=0.342 Sum_probs=161.7
Q ss_pred CCCCccceeecCCcceEEEEEEcC----CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
..|+..++||+|+||.||+|+..+ +..||||.+..... ..+++.+|++++++++||||++++++|.+.++..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 347778999999999999998532 34689999865332 246799999999999999999999988776678899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++
T Consensus 105 v~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a 175 (298)
T 3f66_A 105 VLPYMKHGDLRNFIRNET------HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLA 175 (298)
T ss_dssp EEECCTTCBHHHHHHCTT------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGG
T ss_pred EEeCCCCCCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccc
Confidence 999999999999997543 2489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 688 CAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 688 ~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+..... .....+|..|+|||...... ++.++||||+||++|||+||..|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~~~~~ 232 (298)
T 3f66_A 176 RDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK---------FTTKSDVWSFGVLLWELMTRGAPP 232 (298)
T ss_dssp CCCSCGGGCBC-----CCBCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccccccchhccccccCCCCCccccChHHhcCCC---------CChHHHHHHHHHHHHHHHhCCCCC
Confidence 765321 22345677899999875433 478999999999999999954444
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=315.32 Aligned_cols=208 Identities=14% Similarity=0.146 Sum_probs=160.2
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCC--
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN-- 603 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-- 603 (766)
++.....++|+..+.||+|+||.||+|+. .+|+.||||++.......+++.+|++.++.++|||||++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence 35567788999999999999999999996 578999999997655555678889999999999999999998865322
Q ss_pred ----cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhc--cCCCCCeEecCCCCCCeeeCC-C
Q 004248 604 ----EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH--HECTLPFVHRDVQASSILLDD-K 676 (766)
Q Consensus 604 ----~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--~~~~~~iiHrDlKp~NILl~~-~ 676 (766)
..++||||+++ +|.+.+..... ....+++..+..++.|++.||+||| +. +|+||||||+|||++. +
T Consensus 96 ~~~~~~~lv~e~~~~-~l~~~~~~~~~---~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~ 168 (360)
T 3e3p_A 96 RRDIYLNVVMEYVPD-TLHRCCRNYYR---RQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEAD 168 (360)
T ss_dssp TTCEEEEEEEECCSC-BHHHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTT
T ss_pred ccceeEEEEeecccc-cHHHHHHHHhh---cccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCC
Confidence 27899999986 66555442111 1134899999999999999999999 65 9999999999999996 8
Q ss_pred CcEEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 677 FEVRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.+||+|||+++.... ......+|+.|+|||.+..... ++.++|||||||++|||+||+.||...
T Consensus 169 ~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~Di~slG~il~ell~g~~pf~~~ 235 (360)
T 3e3p_A 169 GTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQH--------YTTAVDIWSVGCIFAEMMLGEPIFRGD 235 (360)
T ss_dssp TEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSS--------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 9999999999987633 2334568999999998754332 578999999999999999999999643
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=309.56 Aligned_cols=195 Identities=21% Similarity=0.350 Sum_probs=164.2
Q ss_pred CCCCccceeecCCcceEEEEEE-----cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecC-CcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERE-NEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~ 605 (766)
+.|+..+.||+|+||.||+|+. .+++.||||++..... ..+++.+|++++++++||||+++++++...+ +..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 3478889999999999999983 4689999999975432 2578999999999999999999999887532 468
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+++|+|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg 171 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKN------KINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFG 171 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCT
T ss_pred EEEEEeCCCCcHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccc
Confidence 999999999999999965432 489999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 686 EVCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 686 ~a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+++..... .....+|..|+|||...... ++.++||||+||++|||+||+.|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~ 229 (302)
T 4e5w_A 172 LTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSK---------FYIASDVWSFGVTLHELLTYCDSD 229 (302)
T ss_dssp TCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTTCGG
T ss_pred ccccccCCCcceeccCCCCCCccccCCeeecCCC---------CCcchhHHHHHHHHHHHHHccCCC
Confidence 99866432 22345677899999875443 468999999999999999999886
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=305.53 Aligned_cols=195 Identities=22% Similarity=0.289 Sum_probs=170.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+.|+..+.||+|+||.||+|+. .+++.||||.+..... ..+.+.+|++++++++||||+++++++.. ++..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 100 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-DTKLWIIME 100 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-CCeEEEEEE
Confidence 4588899999999999999985 5789999999976543 35789999999999999999999998876 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 101 ~~~~~~L~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~ 169 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQL 169 (303)
T ss_dssp CCTTEEHHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred eCCCCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceec
Confidence 99999999998642 389999999999999999999998 9999999999999999999999999999765
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 170 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 222 (303)
T 3a7i_A 170 TDTQIKRNTFVGTPFWMAPEVIKQSA---------YDSKADIWSLGITAIELARGEPPHSEL 222 (303)
T ss_dssp BTTBCCBCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CccccccCccCCCcCccCHHHHhcCC---------CCchhhhHHHHHHHHHHccCCCCCCCc
Confidence 332 23456889999999876543 478999999999999999999999543
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=312.20 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=166.9
Q ss_pred HhCCCCcc-ceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcE
Q 004248 532 ATGDFSDA-NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVS-HARLVPLLGHCMERENEK 605 (766)
Q Consensus 532 ~~~~~~~~-~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~ 605 (766)
..+.|... +.||+|+||.||+|.. .+|+.||||++..... ..+++.+|++++++++ ||||+++++++.. .+..
T Consensus 26 ~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~-~~~~ 104 (327)
T 3lm5_A 26 FNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN-TSEI 104 (327)
T ss_dssp HHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEE
T ss_pred hhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe-CCeE
Confidence 34456666 8899999999999995 4699999999975432 2578999999999995 6999999998765 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~ 682 (766)
++||||+++|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+
T Consensus 105 ~lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~ 176 (327)
T 3lm5_A 105 ILILEYAAGGEIFSLCLPELA-----EMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIV 176 (327)
T ss_dssp EEEEECCTTEEGGGGGSSCC------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEEC
T ss_pred EEEEEecCCCcHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEe
Confidence 999999999999999865322 3589999999999999999999998 9999999999999998 7899999
Q ss_pred cchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++..... .....+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 177 Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwslG~il~~ll~g~~pf~~~ 236 (327)
T 3lm5_A 177 DFGMSRKIGHACELREIMGTPEYLAPEILNYDP---------ITTATDMWNIGIIAYMLLTHTSPFVGE 236 (327)
T ss_dssp CGGGCEEC---------CCCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eCccccccCCccccccccCCcCccCCeeecCCC---------CCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999876432 34457899999999876543 478999999999999999999999543
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=317.43 Aligned_cols=196 Identities=17% Similarity=0.238 Sum_probs=163.3
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCC-----
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMEREN----- 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----- 603 (766)
.++|...+.||+|+||.||+|.. .+|+.||||++...... .+++.+|++++++++||||+++++++.....
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 46788999999999999999985 57999999999754332 4678999999999999999999998765321
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+||||++ |+|.+++.. .+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~D 187 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILD 187 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECS
T ss_pred eEEEEEcccc-ccHHHHhhc---------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEe
Confidence 2399999998 688888732 389999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++..+.......+|+.|+|||.+..... ++.++|||||||++|||+||+.||...
T Consensus 188 fg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~il~el~~g~~pf~~~ 245 (371)
T 4exu_A 188 FGLARHADAEMTGYVVTRWYRAPEVILSWMH--------YNQTVDIWSVGCIMAEMLTGKTLFKGK 245 (371)
T ss_dssp TTCC--------CTTCCCTTSCHHHHSCCSC--------CCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCcccccccCcCCcccCccccCHHHhcCCCC--------CCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999877666666778999999998754221 578999999999999999999999643
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=312.07 Aligned_cols=215 Identities=17% Similarity=0.213 Sum_probs=175.1
Q ss_pred ccHHHHHHHhCCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccc
Q 004248 524 FTYQQLLAATGDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPL 594 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l 594 (766)
+...++.-..++|...+.||+|+||.||+|+. .+++.||||++...... .+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34444444567899999999999999999983 35689999999754432 45799999999999 79999999
Q ss_pred eeEEEecCCcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecC
Q 004248 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRD 665 (766)
Q Consensus 595 ~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrD 665 (766)
++++...++..++||||+++|+|.+++....... .....+++.++..++.|++.||+|||+. +|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cccccc
Confidence 9988765556899999999999999997653210 0012389999999999999999999998 999999
Q ss_pred CCCCCeeeCCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHh
Q 004248 666 VQASSILLDDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 666 lKp~NILl~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
|||+||+++.++.+||+|||+++...... ....+|..|+|||...... ++.++|||||||++|||+
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~ 244 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV---------YTIQSDVWSFGVLLWEIF 244 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHH
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhcccc---------ccchhHHHHHHHHHHHHH
Confidence 99999999999999999999998653221 2345678899999875433 478999999999999999
Q ss_pred c-CCCCCCCCc
Q 004248 741 F-NNHLNLSSR 750 (766)
Q Consensus 741 t-G~~p~~~~~ 750 (766)
| |+.||....
T Consensus 245 t~g~~p~~~~~ 255 (316)
T 2xir_A 245 SLGASPYPGVK 255 (316)
T ss_dssp TTSCCSSTTCC
T ss_pred hCCCCCCcccc
Confidence 8 999995443
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=304.80 Aligned_cols=197 Identities=15% Similarity=0.124 Sum_probs=169.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|+..+.||+|+||.||+|+. .+|+.||||++..... .+++.+|++++++++|++++..+.++...++..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 86 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL 86 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEe
Confidence 46789999999999999999995 7799999999865443 346899999999999999888888777666788999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccchhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLSEVC 688 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG~a~ 688 (766)
+ +|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||++ ++++.+||+|||+++
T Consensus 87 ~-~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~ 156 (296)
T 3uzp_A 87 L-GPSLEDLFNFCS------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156 (296)
T ss_dssp C-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred c-CCCHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence 9 899999997433 2489999999999999999999998 99999999999999 488999999999998
Q ss_pred hcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 218 (296)
T 3uzp_A 157 KYRDARTHQHIPYRENKNLTGTARYASINTHLGIE---------QSRRDDLESLGYVLMYFNLGSLPWQGL 218 (296)
T ss_dssp ECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred cccccccccccccccccccccccccCChhhhcCCC---------CCcchhhHHHHHHHHHHHhCCCCCCCc
Confidence 65322 23456899999999876544 478999999999999999999999643
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=311.74 Aligned_cols=203 Identities=13% Similarity=0.261 Sum_probs=167.0
Q ss_pred CCCCccceeecCCcceEEEEEE--------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL--------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~--------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|...+.||+|+||.||+|+. .+++.||||++...... .+++.+|+++++++ +||||+++++++.. +
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-~ 113 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ-D 113 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc-C
Confidence 5688899999999999999985 34678999999754322 46799999999999 89999999998765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCCC---------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNTE---------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~~---------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..++||||+++|+|.+++....... .....+++.++..++.|++.||+|||+. +|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEE
Confidence 68999999999999999997653210 0113489999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
+.++.+||+|||+++..... .....+|..|+|||...... ++.++|||||||++|||+| |+.||.
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~ 261 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRV---------YTHQSDVWSFGVLMWEIFTLGGSPYP 261 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCC---------cChHHHHHHHHHHHHHHHhCCCCCcC
Confidence 99999999999999865332 22334577899999875432 5789999999999999999 999995
Q ss_pred CC
Q 004248 748 SS 749 (766)
Q Consensus 748 ~~ 749 (766)
..
T Consensus 262 ~~ 263 (334)
T 2pvf_A 262 GI 263 (334)
T ss_dssp TC
T ss_pred cC
Confidence 43
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=320.86 Aligned_cols=198 Identities=19% Similarity=0.208 Sum_probs=160.8
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCC-----cEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN-----EKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-----~~~lV 608 (766)
.+|...++||+|+||.||+|+...+..||+|++..... ...+|++++++++|||||++++++..... ..++|
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~---~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv 116 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR---FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLV 116 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT---SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc---hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEE
Confidence 45888999999999999999987777799999864432 22369999999999999999998865322 27899
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CCCcEEeccchhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DKFEVRLGSLSEV 687 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFG~a 687 (766)
|||+++ ++.+.+..... ....+++..+..++.|+++||+|||+. +|+||||||+|||++ .++.+||+|||+|
T Consensus 117 ~e~~~~-~l~~~~~~~~~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a 189 (394)
T 4e7w_A 117 LEYVPE-TVYRASRHYAK---LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSA 189 (394)
T ss_dssp EECCSE-EHHHHHHHHHH---TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred eeccCc-cHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence 999986 44444332110 013489999999999999999999998 999999999999999 7999999999999
Q ss_pred hhc--CCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQ--GGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~--~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.. +.......+|+.|+|||.+.+... ++.++||||+||++|||++|+.||...
T Consensus 190 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwSlG~il~ell~g~~pf~~~ 245 (394)
T 4e7w_A 190 KILIAGEPNVSYICSRYYRAPELIFGATN--------YTTNIDIWSTGCVMAELMQGQPLFPGE 245 (394)
T ss_dssp EECCTTCCCCSSCSCGGGCCHHHHTTCSS--------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccCCCCCcccccCcCccCHHHHcCCCC--------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 865 233445678999999998754332 578999999999999999999999543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=314.13 Aligned_cols=281 Identities=22% Similarity=0.196 Sum_probs=238.7
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++++.|++++|.+.+-.|..+.. +++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccC-CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 46889999999988766666654 89999999999999988888999999999999999999876666788999999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
|++|++++..|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.++++|+.|+|++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999998888889999999999999999988888889999999999999999988777778899999999999999998
Q ss_pred cCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS 356 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 356 (766)
..+..|..+++|+.|++++|.+.+.++...+.. .+|+.|+|++|+++..++..+..+++|+.|+|++|++++..+ ..+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 268 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SML 268 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-TSC
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-hhc
Confidence 888889999999999999988888888776543 489999999999988777788899999999999999885544 344
Q ss_pred cCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCccccChh
Q 004248 357 NVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGRVPEY 400 (766)
Q Consensus 357 ~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~~p~~ 400 (766)
..+.+|+.|++++|.+.+..|. .+++|+.|||++|++++..+..
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 6678899999999988876654 4578889999999998754443
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=311.77 Aligned_cols=196 Identities=18% Similarity=0.294 Sum_probs=160.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcE----EEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIP----VVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~----vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|+..++||+|+||.||+|.. .+++. ||+|.+..... ..+++.+|++++++++||||+++++++.. +..+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~ 92 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT--STVQ 92 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES--SSEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec--CCce
Confidence 5788999999999999999984 45544 57777754322 36789999999999999999999998875 3589
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|+||+++|+|.+++..... .+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~ 163 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGL 163 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC
T ss_pred EEEEecCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcc
Confidence 99999999999999976542 489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 687 VCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
++..... .....+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 164 a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~ell~~g~~p~~~~ 223 (327)
T 3lzb_A 164 AKLLGAEEKEYHAEGGKVPIKWMALESILHRI---------YTHQSDVWSYGVTVWELMTFGSKPYDGI 223 (327)
T ss_dssp ----------------CCCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred eeEccCccccccccCCCccccccCHHHHcCCC---------CChHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 9865322 12234567899999876443 4789999999999999999 99999643
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=310.98 Aligned_cols=197 Identities=14% Similarity=0.156 Sum_probs=170.6
Q ss_pred CCCCccceeecCCcceEEEEEE--cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCC------cccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL--EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR------LVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~n------iv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|.. .+++.||||+++......+.+.+|++++++++|++ ++++++++.. ++..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~-~~~~ 92 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH-HGHI 92 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE-TTEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc-CCcE
Confidence 5788999999999999999985 46899999999765444678899999999987665 9999997765 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC----------
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---------- 675 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---------- 675 (766)
++||||+ +|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.
T Consensus 93 ~lv~e~~-~~~l~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~ 163 (339)
T 1z57_A 93 CIVFELL-GLSTYDFIKENGF-----LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPK 163 (339)
T ss_dssp EEEEECC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC--
T ss_pred EEEEcCC-CCCHHHHHHhcCC-----CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCc
Confidence 9999999 7899999976542 3489999999999999999999998 9999999999999987
Q ss_pred ---------CCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 676 ---------KFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 676 ---------~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
++.+||+|||+++..........+|+.|+|||...... ++.++|||||||++|||+||+.||
T Consensus 164 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~g~~pf 234 (339)
T 1z57_A 164 IKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALG---------WSQPCDVWSIGCILIEYYLGFTVF 234 (339)
T ss_dssp --CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSC---------CCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred cccccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCC---------CCcchhhHHHHHHHHHHHhCCCCC
Confidence 67899999999987766666667899999999876543 478999999999999999999999
Q ss_pred CCC
Q 004248 747 LSS 749 (766)
Q Consensus 747 ~~~ 749 (766)
...
T Consensus 235 ~~~ 237 (339)
T 1z57_A 235 PTH 237 (339)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=304.03 Aligned_cols=195 Identities=21% Similarity=0.317 Sum_probs=162.2
Q ss_pred CCccceeecCCcceEEEEEE-cCC---cEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGG---IPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g---~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
|...++||+|+||.||+|.. .++ ..||+|.+..... ..+.|.+|++++++++||||+++++++.+.+...++||
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~ 102 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL 102 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence 44568999999999999984 333 3799999865332 24679999999999999999999998876444559999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+.+|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 103 e~~~~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 173 (298)
T 3pls_A 103 PYMCHGDLLQFIRSPQ------RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARD 173 (298)
T ss_dssp CCCTTCBHHHHHHCTT------CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCT
T ss_pred ecccCCCHHHHHhccc------cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCccc
Confidence 9999999999997633 2489999999999999999999998 999999999999999999999999999975
Q ss_pred cCC-------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGG-------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~-------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
... ......++..|+|||...... ++.++|||||||++|||+||+.|++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~~~~~ 230 (298)
T 3pls_A 174 ILDREYYSVQQHRHARLPVKWTALESLQTYR---------FTTKSDVWSFGVLLWELLTRGAPPYR 230 (298)
T ss_dssp TTTGGGGCSCCSSCTTCGGGGSCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred ccCCcccccccCcCCCCCccccChhhhccCC---------CChhhchhhHHHHHHHHhhCCCCCCc
Confidence 422 223345678899999876543 47899999999999999997666543
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=303.78 Aligned_cols=200 Identities=19% Similarity=0.241 Sum_probs=167.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|....+||+|+||.||+|.. .+++.||||.+...... .+.+.+|++++++++||||+++++++.. .+..++||||
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~ 100 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-NGFIKIFMEQ 100 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEEEEC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-CCcEEEEEEe
Confidence 3456667999999999999995 67899999999765433 5779999999999999999999998866 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEeccchhhhhc
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRLGSLSEVCAQ 690 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG~a~~~ 690 (766)
+++|+|.+++..... ...+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++..
T Consensus 101 ~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~ 173 (295)
T 2clq_A 101 VPGGSLSALLRSKWG----PLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRL 173 (295)
T ss_dssp CSEEEHHHHHHHTTC----CCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEES
T ss_pred CCCCCHHHHHHhhcc----CCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeeccccccc
Confidence 999999999976432 12467999999999999999999998 9999999999999997 899999999999765
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
... .....+|..|+|||.......+ ++.++|||||||++|||+||+.||..
T Consensus 174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~Di~slG~il~~l~~g~~pf~~ 227 (295)
T 2clq_A 174 AGINPCTETFTGTLQYMAPEIIDKGPRG-------YGKAADIWSLGCTIIEMATGKPPFYE 227 (295)
T ss_dssp CC-----CCCCCCGGGCCHHHHHHGGGG-------CSHHHHHHHHHHHHHHHHHTSCTTGG
T ss_pred CCCCCcccccCCCccccChhhhcCCCCC-------CCcHHHHHHHHHHHHHHHHCCCCccC
Confidence 321 2345688999999987543221 47899999999999999999999953
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=312.62 Aligned_cols=197 Identities=18% Similarity=0.233 Sum_probs=168.2
Q ss_pred CCCCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEe-cCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCME-RENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~-~~~~~~ 606 (766)
++|+..+.||+|+||.||+|+. .+++.||||++...... .+.+.+|++++++++||||+++++++.. ..+..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 4688899999999999999983 46889999999765433 5679999999999999999999998764 245689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 103 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 173 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHRA------RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGL 173 (327)
T ss_dssp EEEECCTTCBHHHHHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGG
T ss_pred EEEeecCCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccccc
Confidence 99999999999999976432 489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
++..... .....+|..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~ll~g~~p~~~ 232 (327)
T 3lxl_A 174 AKLLPLDKDYYVVREPGQSPIFWYAPESLSDNI---------FSRQSDVWSFGVVLYELFTYCDKSCS 232 (327)
T ss_dssp CEECCTTCSEEECSSCCCSCGGGSCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred ceecccCCccceeeccCCccccccCHHHhccCC---------CChHHhHHHHHHHHHHHHhCCCCCcc
Confidence 9865322 22345677899999875433 47899999999999999999999853
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=309.14 Aligned_cols=203 Identities=16% Similarity=0.229 Sum_probs=165.1
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc-CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV-KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
.++|+..+.||+|+||.||+|... +++.||+|.+..... ..+++.+|++++++++||||+++++++.. ++..++|||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 96 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-DGKLWIMIE 96 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-C-CEEEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-CCeEEEEEE
Confidence 356888999999999999999964 689999999865443 36789999999999999999999998876 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 97 ~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 167 (302)
T 2j7t_A 97 FCPGGAVDAIMLELD------RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKN 167 (302)
T ss_dssp CCTTEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHH
T ss_pred eCCCCcHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccc
Confidence 999999999987543 2489999999999999999999998 9999999999999999999999999997643
Q ss_pred C---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 G---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .......+|..|+|||.......+... ++.++|||||||++|||+||+.||...
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~Di~slG~il~~l~~g~~p~~~~ 225 (302)
T 2j7t_A 168 LKTLQKRDSFIGTPYWMAPEVVMCETMKDTP----YDYKADIWSLGITLIEMAQIEPPHHEL 225 (302)
T ss_dssp HHHHHC-----CCGGGCCHHHHHHHHTTSTT----TTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred cccccccccccCChhhcCCeeeccccCCCCC----CchhhhHHHHHHHHHHHhcCCCCCccC
Confidence 1 122344688999999976321100001 578999999999999999999999643
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=308.22 Aligned_cols=193 Identities=21% Similarity=0.347 Sum_probs=164.3
Q ss_pred CCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEE
Q 004248 536 FSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFL 607 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~l 607 (766)
|+..+.||+|+||.||+|.. .+++.||||++...... .+.+.+|++++++++||||+++++++.+. ....++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 47889999999999998863 36889999999765322 56799999999999999999999988764 356899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||+++|+|.+++.+. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 113 v~e~~~~~~L~~~l~~~--------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a 181 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRH--------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLA 181 (318)
T ss_dssp EECCCTTCBHHHHGGGS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGC
T ss_pred EEecccCCcHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccc
Confidence 99999999999999653 289999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 688 CAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 688 ~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+..... .....+|..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~ll~g~~p~~~ 239 (318)
T 3lxp_A 182 KAVPEGHEYYRVREDGDSPVFWYAPECLKEYK---------FYYASDVWSFGVTLYELLTHCDSSQS 239 (318)
T ss_dssp EECCTTCSEEEC---CCCCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred ccccccccccccccCCCCCceeeChHHhcCCC---------CCcHHHHHHHHHHHHHHHhCCCcccc
Confidence 876432 22335677899999875433 46899999999999999999999854
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=304.81 Aligned_cols=194 Identities=22% Similarity=0.335 Sum_probs=166.7
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEe------------
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCME------------ 600 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~------------ 600 (766)
++|+..+.||+|+||.||+|+.. +|+.||||++.... +.+.+|++++++++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~ 87 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNS 87 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--------
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccc
Confidence 46888999999999999999964 79999999997543 457789999999999999999997643
Q ss_pred ---cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC
Q 004248 601 ---RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF 677 (766)
Q Consensus 601 ---~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~ 677 (766)
.....++||||+++|+|.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||++++++
T Consensus 88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~ 159 (284)
T 2a19_B 88 SRSKTKCLFIQMEFCDKGTLEQWIEKRRG-----EKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTK 159 (284)
T ss_dssp -CCEEEEEEEEECCCCSCBHHHHHHHGGG-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETT
T ss_pred cccCcceEEEEEeccCCCCHHHHHhhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCC
Confidence 12347999999999999999975432 3489999999999999999999998 999999999999999999
Q ss_pred cEEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 678 EVRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
.+||+|||+++.... ......+|..|+|||...... ++.++|||||||++|||+||+.|+.
T Consensus 160 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~~~~~~ 222 (284)
T 2a19_B 160 QVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQD---------YGKEVDLYALGLILAELLHVCDTAF 222 (284)
T ss_dssp EEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSC---------CCTHHHHHHHHHHHHHHHSCCSSHH
T ss_pred CEEECcchhheeccccccccccCCcccccChhhhccCC---------CcchhhhHHHHHHHHHHHhcCCcch
Confidence 999999999987643 234456899999999875443 4789999999999999999998874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=308.21 Aligned_cols=250 Identities=30% Similarity=0.466 Sum_probs=229.5
Q ss_pred CCCCEEEccCCCCCc--cCCcccCCCCCCcEEEeec-CcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCE
Q 004248 142 PTLQALDLRSCSISG--VIPFSLGNLTNLTSLYLSD-NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 218 (766)
.+++.|+|++|.+++ .+|..++++++|++|+|++ |.+++.+|..|+++++|++|+|++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCC-CCCEEEccCCcCCccCCcccCCCCCCCEEEccCcc
Q 004248 219 LDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLD-SLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNF 297 (766)
Q Consensus 219 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~ 297 (766)
|+|++|.+++.+|..+.++++|++|+|++|++++.+|..+++++ +|++|++++|++++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999999999999999999999999999999999999998 999999999999999999999997 9999999999
Q ss_pred CccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC
Q 004248 298 LSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT 377 (766)
Q Consensus 298 l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~ 377 (766)
+++.+|. .|..+++|+.|+|++|++++.+|. +..+++|++|+|++|+++|.+|... ..+++|+.|++++|.++|.+|
T Consensus 209 l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 209 LEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEECCGG-GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECC
T ss_pred ccCcCCH-HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEECcCCcccccCC
Confidence 9986664 458899999999999999988776 7889999999999999999999654 556789999999999998888
Q ss_pred cC--CCCCCEEeccCCc-Ccc
Q 004248 378 PV--LGRFRLVDLSGNY-FEG 395 (766)
Q Consensus 378 ~~--l~~l~~ldLs~N~-l~g 395 (766)
.. +++|+.+++++|+ +.|
T Consensus 286 ~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CSTTGGGSCGGGTCSSSEEES
T ss_pred CCccccccChHHhcCCCCccC
Confidence 63 5678888888887 555
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=319.21 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=164.6
Q ss_pred CCCCccceeecCCcceEEEEEEc---------CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCccc-----------
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE---------GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP----------- 593 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~---------~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~----------- 593 (766)
++|...+.||+|+||.||+|+.. +++.||||.+... +.+.+|++++++++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 117 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLL 117 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTC
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCcc
Confidence 56888999999999999999964 3889999998744 46889999999999999988
Q ss_pred ----ceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCC
Q 004248 594 ----LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQAS 669 (766)
Q Consensus 594 ----l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~ 669 (766)
+++++...++..|+||||+ +|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+
T Consensus 118 ~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~ 188 (352)
T 2jii_A 118 AIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK-----HVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAE 188 (352)
T ss_dssp SCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG-----GCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGG
T ss_pred CccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHH
Confidence 5676665457899999999 9999999986421 3499999999999999999999998 9999999999
Q ss_pred CeeeCCCC--cEEeccchhhhhcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHH
Q 004248 670 SILLDDKF--EVRLGSLSEVCAQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLF 737 (766)
Q Consensus 670 NILl~~~~--~~kl~DFG~a~~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ 737 (766)
|||++.++ .+||+|||+++..... .....+|..|+|||...... ++.++|||||||++|
T Consensus 189 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~ 259 (352)
T 2jii_A 189 NIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCG---------PSRRSDLQSLGYCML 259 (352)
T ss_dssp GEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHH
T ss_pred HEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCC---------CCchhhHHHHHHHHH
Confidence 99999998 8999999999765311 13347899999999876543 478999999999999
Q ss_pred HHhcCCCCCCCCc
Q 004248 738 SAIFNNHLNLSSR 750 (766)
Q Consensus 738 elltG~~p~~~~~ 750 (766)
||+||+.||....
T Consensus 260 el~~g~~pf~~~~ 272 (352)
T 2jii_A 260 KWLYGFLPWTNCL 272 (352)
T ss_dssp HHHHSCCTTGGGT
T ss_pred HHHhCCCCcccCC
Confidence 9999999996543
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=316.16 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=159.6
Q ss_pred CCCCccceeecCCcceEEEEEEc----CCcEEEEEEeecccc------------CHHHHHHHHHHHhhcCCCCcccceeE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSV------------KTEAYLLELDFFSKVSHARLVPLLGH 597 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~------------~~~~~~~E~~~l~~l~H~niv~l~~~ 597 (766)
++|...+.||+|+||.||+|... ++..||||++..... ..+.+.+|+.+++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56888999999999999999964 678999999875432 12357789999999999999999998
Q ss_pred EEec---CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC
Q 004248 598 CMER---ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD 674 (766)
Q Consensus 598 ~~~~---~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~ 674 (766)
+... ....|+||||+ +|+|.+++...+ .+++.++..++.||+.||+|||+. +|+||||||+|||++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~ 185 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG-------TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLG 185 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEE
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEc
Confidence 7652 35789999999 999999997543 489999999999999999999998 999999999999999
Q ss_pred CCC--cEEeccchhhhhcCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcC
Q 004248 675 DKF--EVRLGSLSEVCAQGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN 742 (766)
Q Consensus 675 ~~~--~~kl~DFG~a~~~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG 742 (766)
.++ .+||+|||+++..... .....+|..|+|||...... ++.++|||||||++|||+||
T Consensus 186 ~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~ell~g 256 (345)
T 2v62_A 186 YKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVA---------LSRRSDVEILGYCMLRWLCG 256 (345)
T ss_dssp SSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCC---------CCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCC---------CCchhhHHHHHHHHHHHHhC
Confidence 887 9999999999765211 13446899999999876543 57899999999999999999
Q ss_pred CCCCCC
Q 004248 743 NHLNLS 748 (766)
Q Consensus 743 ~~p~~~ 748 (766)
+.||..
T Consensus 257 ~~pf~~ 262 (345)
T 2v62_A 257 KLPWEQ 262 (345)
T ss_dssp SCTTGG
T ss_pred CCCccc
Confidence 999953
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=303.84 Aligned_cols=196 Identities=20% Similarity=0.329 Sum_probs=164.1
Q ss_pred hCCCCccceeecCCcceEEEEEEcC----CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
.++|...+.||+|+||.||+|+... +..||||.+..... ..++|.+|++++++++||||+++++++.+ +..+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--~~~~ 88 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE--EPTW 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS--SSCE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC--CCCE
Confidence 3568889999999999999998532 34699999876432 25679999999999999999999997643 4679
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++.+... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 89 ~v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~ 159 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNKN------SLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGL 159 (281)
T ss_dssp EEEECCTTCBHHHHHHHHTT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCG
T ss_pred EEEecCCCCCHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCC
Confidence 99999999999999976432 489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 687 VCAQGGD----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 687 a~~~~~~----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~llt~g~~p~~~ 217 (281)
T 3cc6_A 160 SRYIEDEDYYKASVTRLPIKWMSPESINFRR---------FTTASDVWMFAVCMWEILSFGKQPFFW 217 (281)
T ss_dssp GGCC---------CCCCCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CcccccccccccccCCCCcceeCchhhccCC---------CCchhccHHHHHHHHHHHhCCCCCccc
Confidence 9865332 22334577899999875433 4789999999999999998 9999954
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=309.80 Aligned_cols=201 Identities=19% Similarity=0.217 Sum_probs=152.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcC-CCCcccceeEEEe-------cCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVS-HARLVPLLGHCME-------REN 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~-H~niv~l~~~~~~-------~~~ 603 (766)
.+|+..++||+|+||.||+|+. .+++.||||++...... .+.+.+|+++++++. ||||+++++++.. ...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~ 107 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA 107 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence 4688899999999999999995 57899999998654433 567899999999996 9999999998742 223
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCC--eEecCCCCCCeeeCCCCcEEe
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLP--FVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--iiHrDlKp~NILl~~~~~~kl 681 (766)
..++||||++ |+|.+++..... ...+++.++..++.|++.||+|||+. + |+||||||+|||++.++.+||
T Consensus 108 ~~~lv~e~~~-g~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl 179 (337)
T 3ll6_A 108 EFLLLTELCK-GQLVEFLKKMES----RGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKL 179 (337)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEB
T ss_pred eEEEEEEecC-CCHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEE
Confidence 5899999997 799999875221 12499999999999999999999987 6 999999999999999999999
Q ss_pred ccchhhhhcCCCC---------------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 682 GSLSEVCAQGGDA---------------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 682 ~DFG~a~~~~~~~---------------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+|||+++...... ....+|..|+|||......... ++.++|||||||++|||+||+.||
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~------~~~~~Dv~slG~il~el~~g~~p~ 253 (337)
T 3ll6_A 180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFP------IGEKQDIWALGCILYLLCFRQHPF 253 (337)
T ss_dssp CCCTTCBCCSSCC-------------------------------CCTTSC------SSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCC------CChHHhHHHHHHHHHHHHhCCCCC
Confidence 9999998653221 1345889999999874222111 578999999999999999999999
Q ss_pred CC
Q 004248 747 LS 748 (766)
Q Consensus 747 ~~ 748 (766)
..
T Consensus 254 ~~ 255 (337)
T 3ll6_A 254 ED 255 (337)
T ss_dssp --
T ss_pred cc
Confidence 53
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=313.33 Aligned_cols=199 Identities=16% Similarity=0.194 Sum_probs=164.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---------CHHHHHHHHHHHhhcCCCCcccceeEEEecCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---------KTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 603 (766)
++|...+.||+|+||.||+|+. .+++.||||.+..... ....+.+|++++++++||||+++++++.. +
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--~ 87 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA--E 87 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES--S
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC--C
Confidence 5688999999999999999995 5689999999865321 12358899999999999999999997754 3
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc---EE
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE---VR 680 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~---~k 680 (766)
..|+||||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++. +|
T Consensus 88 ~~~lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~k 157 (322)
T 2ycf_A 88 DYYIVLELMEGGELFDKVVGNK-------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIK 157 (322)
T ss_dssp SEEEEEECCTTEETHHHHSTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEE
T ss_pred ceEEEEecCCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEE
Confidence 5899999999999999986543 389999999999999999999998 9999999999999987664 99
Q ss_pred eccchhhhhcCCCC--ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 681 LGSLSEVCAQGGDA--HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 681 l~DFG~a~~~~~~~--~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|+|||+++...... ....+|..|+|||.+.....+. ++.++|||||||++|||+||+.||....
T Consensus 158 l~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~------~~~~~Di~slG~il~~l~~g~~pf~~~~ 223 (322)
T 2ycf_A 158 ITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAG------YNRAVDCWSLGVILFICLSGYPPFSEHR 223 (322)
T ss_dssp ECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTT------CTTHHHHHHHHHHHHHHHHSSCSSCSTT
T ss_pred EccCccceecccccccccccCCcCccCchhhccCCCCC------CCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 99999998764332 2346899999999763211111 5789999999999999999999996443
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=336.02 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=159.3
Q ss_pred eeecCCcceEEEEEEc---CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCCCC
Q 004248 541 LIKNGHSGDLFRGILE---GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
.||+|+||.||+|... ++..||||+++.... ..++|.+|+++|++++|||||+++++|.. +..++|||||++|
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~--~~~~lv~E~~~~g 420 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--EALMLVMEMAGGG 420 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES--SSEEEEEECCTTC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc--CCeEEEEEeCCCC
Confidence 7999999999999853 567899999976432 36789999999999999999999998764 4699999999999
Q ss_pred ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC-
Q 004248 616 DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA- 694 (766)
Q Consensus 616 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~- 694 (766)
+|.+++.... ..+++.++..++.||+.||+|||++ +||||||||+|||+++++.+||+|||+++......
T Consensus 421 ~L~~~l~~~~------~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~ 491 (613)
T 2ozo_A 421 PLHKFLVGKR------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS 491 (613)
T ss_dssp BHHHHHTTCT------TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----
T ss_pred cHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc
Confidence 9999997543 2489999999999999999999998 99999999999999999999999999998763221
Q ss_pred -----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 695 -----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 695 -----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
....++..|+|||.+.... ++.++|||||||++|||+| |+.||...
T Consensus 492 ~~~~~~~~~~~~~y~APE~~~~~~---------~~~~sDvwSlGv~l~ellt~G~~Pf~~~ 543 (613)
T 2ozo_A 492 YYTARSAGKWPLKWYAPECINFRK---------FSSRSDVWSYGVTMWEALSYGQKPYKKM 543 (613)
T ss_dssp ----------CCTTSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred eeeeccCCCCccceeCHhhhcCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 1223456899999875433 5789999999999999998 99999543
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=316.06 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=170.6
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCC-----cccceeEEEecCCc
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HAR-----LVPLLGHCMERENE 604 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~n-----iv~l~~~~~~~~~~ 604 (766)
..++|+..+.||+|+||.||+|+. .+++.||||+++......+++.+|+++++.++ |++ |+++++++.. ++.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~-~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF-RNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE-TTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc-CCc
Confidence 357899999999999999999985 57889999999755444567888999999885 553 9999997766 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC--CCCcEEec
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD--DKFEVRLG 682 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~--~~~~~kl~ 682 (766)
.++||||++ |+|.+++..... ..+++..+..++.|++.||+|||++ ..+||||||||+|||++ .++.+||+
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~ 203 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNF-----RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV 203 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEEC
T ss_pred eEEEEecCC-CCHHHHHhhcCc-----CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEE
Confidence 999999997 599999976532 3489999999999999999999952 24899999999999995 57889999
Q ss_pred cchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 683 SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|||+++..+.......+|+.|+|||.+.... ++.++|||||||++|||+||+.||...
T Consensus 204 DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 204 DFGSSCQLGQRIYQYIQSRFYRSPEVLLGMP---------YDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp CCTTCEETTCCCCSSCSCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eccCceecccccccccCCccccChHHHcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 9999988776666778999999999886544 478999999999999999999999643
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=308.86 Aligned_cols=205 Identities=22% Similarity=0.231 Sum_probs=153.0
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|. ..+++.||||++..... ..+++.+|++++++++||||+++++++.. ++..++||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~ 92 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVV-KDELWLVM 92 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEES-SSCEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEee-cCCcEEEe
Confidence 4679999999999999999998 45789999999865432 25678999999999999999999998765 56799999
Q ss_pred eeCCCCChhhhhhccCC-CCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTN-TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~-~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||+++|+|.+++..... .......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 99999999999864210 001123589999999999999999999998 99999999999999999999999999997
Q ss_pred hcCCC--------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD--------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~--------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....+|+.|+|||....... ++.++|||||||++|||+||+.||...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~g~~pf~~~ 230 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRG--------YDFKADIWSFGITAIELATGAAPYHKY 230 (303)
T ss_dssp HCC---------------CCCTTCCHHHHHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred eeccCCCccchhhhcccCCCccccCHHHhccccC--------CCchhhHHHHHHHHHHHHhCCCCCccC
Confidence 65321 123467899999997643211 478999999999999999999999643
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=310.13 Aligned_cols=203 Identities=21% Similarity=0.350 Sum_probs=164.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcE--EEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIP--VVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~--vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|+. .++.. ||||++..... ..+++.+|+++++++ +||||+++++++.+ ++..|+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-~~~~~l 103 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-RGYLYL 103 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-TTEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeee-CCceEE
Confidence 5688899999999999999984 56664 49999875332 245799999999999 89999999998866 568999
Q ss_pred EEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 608 VYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
||||+++|+|.+++...... ......+++.++..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCe
Confidence 99999999999999764300 00123589999999999999999999998 9999999999999999999
Q ss_pred EEeccchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 679 VRLGSLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 679 ~kl~DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+||+|||+++... .......++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 181 ~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~pf~~~ 245 (327)
T 1fvr_A 181 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV---------YTTNSDVWSYGVLLWEIVSLGGTPYCGM 245 (327)
T ss_dssp EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred EEEcccCcCccccccccccCCCCCccccChhhhcccc---------CCchhcchHHHHHHHHHHcCCCCCCCCC
Confidence 9999999987542 1223345577899999874332 4789999999999999998 99999543
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=303.07 Aligned_cols=201 Identities=23% Similarity=0.254 Sum_probs=169.4
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----------CHHHHHHHHHHHhhcC-CCCcccceeEEEe
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----------KTEAYLLELDFFSKVS-HARLVPLLGHCME 600 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----------~~~~~~~E~~~l~~l~-H~niv~l~~~~~~ 600 (766)
.++|+..+.||+|+||.||+|.. .+|+.||||.++.... ..+.+.+|++++++++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 46788999999999999999995 5789999999975431 1456889999999996 9999999997765
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
++..++||||+++|+|.+++..+. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 96 -~~~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~k 164 (298)
T 1phk_A 96 -NTFFFLVFDLMKKGELFDYLTEKV-------TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIK 164 (298)
T ss_dssp -SSEEEEEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEE
T ss_pred -CCeEEEEEeccCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEE
Confidence 568999999999999999997643 389999999999999999999998 999999999999999999999
Q ss_pred eccchhhhhcCC--CCccceeeecccCCCCCCCCce-eeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 681 LGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSS-GMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 681 l~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~-g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+|||+++.... ......++..|+|||....... +.. .++.++|||||||++|||++|+.||..
T Consensus 165 l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~~Di~slG~~l~~l~~g~~p~~~ 231 (298)
T 1phk_A 165 LTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHP----GYGKEVDMWSTGVIMYTLLAGSPPFWH 231 (298)
T ss_dssp ECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSC----CBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EecccchhhcCCCcccccccCCccccCHHHhccccccccc----cCCcccccHhHHHHHHHHHHCCCCCcC
Confidence 999999976532 2344568899999997642100 000 157899999999999999999999954
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=309.50 Aligned_cols=203 Identities=20% Similarity=0.272 Sum_probs=165.3
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|...+.||+|+||.||+|+. .+++.||||++..... ..+++.+|+.++++++||||+++++++.. .+..
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~ 108 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ-SLPR 108 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSC
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcC-CCCc
Confidence 5688999999999999999983 3577999999964332 25679999999999999999999998765 5678
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~ 682 (766)
|+||||+++|+|.+++............+++.++..++.|++.||+|||+. +|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEEC
Confidence 999999999999999987543222334589999999999999999999998 9999999999999994 4469999
Q ss_pred cchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 683 SLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 683 DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|||+++.... ......+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~~~ 249 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGI---------FTSKTDTWSFGVLLWEIFSLGYMPYPSK 249 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCC---------CCchhhHHHHHHHHHHHHcCCCCCCCCc
Confidence 9999975421 122345688899999875433 4789999999999999998 99998543
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=308.98 Aligned_cols=197 Identities=20% Similarity=0.303 Sum_probs=159.2
Q ss_pred HhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhc--CCCCcccceeEEEecC---CcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV--SHARLVPLLGHCMERE---NEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l--~H~niv~l~~~~~~~~---~~~~ 606 (766)
..++|+..+.||+|+||.||+|+.. ++.||||++.... ...+.+|.+++... +||||+++++++.... ...+
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 111 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE--EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLY 111 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc--cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceE
Confidence 3467999999999999999999875 8899999986443 34556666666655 9999999999887632 5789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC-----CCCeEecCCCCCCeeeCCCCcEEe
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC-----TLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
+||||+++|+|.+++... .+++.++..++.|++.||+|||+.+ .++|+||||||+|||++.++.+||
T Consensus 112 lv~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl 183 (337)
T 3mdy_A 112 LITDYHENGSLYDYLKST--------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCI 183 (337)
T ss_dssp EEECCCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred EEEeccCCCcHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEE
Confidence 999999999999999653 3899999999999999999999752 348999999999999999999999
Q ss_pred ccchhhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcC
Q 004248 682 GSLSEVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN 742 (766)
Q Consensus 682 ~DFG~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG 742 (766)
+|||+++..... .....+|..|+|||.+........ ...+.++|||||||++|||+||
T Consensus 184 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~---~~~~~~~DiwslG~il~el~tg 248 (337)
T 3mdy_A 184 ADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNH---FQSYIMADMYSFGLILWEVARR 248 (337)
T ss_dssp CCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTC---THHHHHHHHHHHHHHHHHHHTT
T ss_pred EeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCcc---ccCccccchHHHHHHHHHHHhc
Confidence 999999765322 123468999999998765433210 0123469999999999999999
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=312.69 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=163.5
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCC-----
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMEREN----- 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----- 603 (766)
.++|...+.||+|+||.||+|+. .+|+.||||++...... .+++.+|+.++++++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 35788899999999999999995 57999999999654332 4678999999999999999999998765321
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..|+||||++ |+|.+++.. .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~D 169 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILD 169 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECS
T ss_pred eEEEEecccc-CCHHHHhcC---------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEee
Confidence 3599999998 699887742 389999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
||+++..........+|+.|+|||....... ++.++|||||||++|||+||+.||...+
T Consensus 170 fg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~Di~slG~il~el~~g~~pf~~~~ 228 (353)
T 3coi_A 170 FGLARHADAEMTGYVVTRWYRAPEVILSWMH--------YNQTVDIWSVGCIMAEMLTGKTLFKGKD 228 (353)
T ss_dssp TTCTTC--------CCSBCCSCHHHHSCCSC--------CCTTHHHHHHHHHHHHHHHSSCSSBSSC
T ss_pred cccccCCCCCccccccCcCcCCHHHHhCcCC--------CCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999877655566678999999998754221 5789999999999999999999996543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=323.28 Aligned_cols=303 Identities=25% Similarity=0.219 Sum_probs=185.6
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
+++.+++++..... +.+..+.++++|++|++++|.+.+-.|..+.. +++|++|+|++|.+++..|..|++++
T Consensus 33 ~l~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 33 STKNIDLSFNPLKI-------LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CcCEEECCCCCcCE-------eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcc
Confidence 57778887754321 12235667777777777777776655555543 77777777777777776677777777
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCC-CCCcccCCCCCCCEEeccCCcCCCCCCCCC-----------
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGL----------- 234 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----------- 234 (766)
+|++|+|++|.+++..|..++++++|++|+|++|++++ .+|..|+++++|++|+|++|++++..|..+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 77777777777776655667777777777777777765 457777777777777777776654433322
Q ss_pred --------------------------------------------------------------------------------
Q 004248 235 -------------------------------------------------------------------------------- 234 (766)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (766)
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence
Q ss_pred ---------------------------------------CCCCCccEEEccCCCCCCCCcc-------------------
Q 004248 235 ---------------------------------------GTLSKLQYLNVSNNSLASSIPA------------------- 256 (766)
Q Consensus 235 ---------------------------------------~~l~~L~~L~Ls~N~l~~~~p~------------------- 256 (766)
..+++|++|++++|.+ +.+|.
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEE
T ss_pred heeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccc
Confidence 1222333333333333 22221
Q ss_pred -ccCCCCCCCEEEccCCcCCcc--CCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCC-cccC
Q 004248 257 -QLGDLDSLVDLDLSMNSLSGS--VPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP-DVLW 332 (766)
Q Consensus 257 -~l~~l~~L~~L~Ls~N~l~g~--~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~ 332 (766)
.++.+++|++|++++|++++. +|..+..+++|++|++++|.+++ +| ..|..+++|+.|++++|++++.+| ..+.
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCccChhhhh
Confidence 234566777777777777755 36666677777777777776654 33 334566666666666666666655 4566
Q ss_pred CCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccC-CCc---CCCCCCEEeccCCcCccccChhh
Q 004248 333 SMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGG-LTP---VLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 333 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~-~~~---~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
.+++|++|++++|++++.+|.. +..+++|+.|++++|.+.+. +|. .+++|+.|+|++|++++..|..+
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccccCCEEECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 6666666666666666655533 23445666666666666653 332 24556666666666666555544
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=303.04 Aligned_cols=195 Identities=19% Similarity=0.295 Sum_probs=164.0
Q ss_pred CCCccc-eeecCCcceEEEEEE---cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 535 DFSDAN-LIKNGHSGDLFRGIL---EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~-~ig~G~~g~Vy~~~~---~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+|...+ .||+|+||.||+|.. .++..||||+++.... ..+++.+|++++++++||||+++++++. .+..++|
T Consensus 10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--~~~~~lv 87 (287)
T 1u59_A 10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ--AEALMLV 87 (287)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE--SSSEEEE
T ss_pred HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec--CCCcEEE
Confidence 455555 899999999999984 3678999999976432 2567999999999999999999999873 3579999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~ 158 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKR------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSK 158 (287)
T ss_dssp EECCTTEEHHHHHTTCT------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEeCCCCCHHHHHHhCC------ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECccccee
Confidence 99999999999996543 2489999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 689 AQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 689 ~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
..... .....+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~p~~~~ 217 (287)
T 1u59_A 159 ALGADDSYYTARSAGKWPLKWYAPECINFRK---------FSSRSDVWSYGVTMWEALSYGQKPYKKM 217 (287)
T ss_dssp ECTTCSCEECCCCSSCCCGGGCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred eeccCcceeeccccccccccccCHHHhccCC---------CCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence 66322 12234578899999874332 5789999999999999999 99999543
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=306.84 Aligned_cols=200 Identities=19% Similarity=0.271 Sum_probs=159.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|...+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|++++++++||||+++++++.. ++..++|
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv 110 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-DNELNIV 110 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-CCcEEEE
Confidence 4688899999999999999995 6799999999975322 25678999999999999999999998876 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++..... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 111 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~ 184 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKK---QKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR 184 (310)
T ss_dssp EECCCSCBHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred EecCCCCCHHHHHHHhcc---cccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence 999999999999864221 113489999999999999999999998 99999999999999999999999999997
Q ss_pred hcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... .....++..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 185 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Dv~slG~il~~l~~g~~p~~~~ 239 (310)
T 2wqm_A 185 FFSSKTTAAHSLVGTPYYMSPERIHENG---------YNFKSDIWSLGCLLYEMAALQSPFYGD 239 (310)
T ss_dssp --------------CCSSCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred eecCCCccccccCCCeeEeChHHhCCCC---------CCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 65322 23346789999999876543 478999999999999999999999643
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=309.59 Aligned_cols=196 Identities=19% Similarity=0.354 Sum_probs=160.1
Q ss_pred CCCCccceeecCCcceEEEEEEcC-----CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG-----GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~-----g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|...+.||+|+||.||+|.... +..||||.+...... .+++.+|++++++++||||+++++++.. .+..+
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~ 122 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-YKPMM 122 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec-CCCcE
Confidence 346667999999999999998532 346999999754322 4579999999999999999999997765 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 123 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 193 (333)
T 1mqb_A 123 IITEYMENGALDKFLREKDG------EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGL 193 (333)
T ss_dssp EEEECCTTEEHHHHHHHTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred EEEeCCCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCc
Confidence 99999999999999976432 489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 687 VCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 687 a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
++...... ....+|..|+|||...... ++.++|||||||++|||+| |+.||..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~ellt~g~~pf~~ 253 (333)
T 1mqb_A 194 SRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK---------FTSASDVWSFGIVMWEVMTYGERPYWE 253 (333)
T ss_dssp -----------------CCCGGGSCHHHHHSCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred chhhccccccccccCCCCccccccCchhcccCC---------CCchhhhHHHHHHHHHHHcCCCCCccc
Confidence 98753221 1223467899999875443 4789999999999999999 9999954
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=304.82 Aligned_cols=198 Identities=18% Similarity=0.267 Sum_probs=166.1
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
..++|+..+.||+|+||.||+|.. .+|+.||||.+.... ..+++.+|++++++++||||+++++++.. ++..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHVVKYYGSYFK-NTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhCCCCCCccEEEEEEe-CCEEEEEee
Confidence 346789999999999999999995 468999999997543 35679999999999999999999998876 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 105 ~~~~~~L~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 175 (314)
T 3com_A 105 YCGAGSVSDIIRLRN------KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQL 175 (314)
T ss_dssp CCTTEEHHHHHHHHT------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred cCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhh
Confidence 999999999997432 2489999999999999999999998 9999999999999999999999999999765
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 176 ~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~p~~~~ 228 (314)
T 3com_A 176 TDTMAKRNTVIGTPFWMAPEVIQEIG---------YNCVADIWSLGITAIEMAEGKPPYADI 228 (314)
T ss_dssp BTTBSCBCCCCSCGGGCCHHHHSSSC---------BCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred hhhccccCccCCCCCccChhhcCCCC---------CCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 332 23456789999999876543 478999999999999999999999643
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=312.49 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=169.9
Q ss_pred HHHhCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEec
Q 004248 530 LAATGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMER 601 (766)
Q Consensus 530 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 601 (766)
....++|...+.||+|+||.||+|+.. +++.||||.+...... ..++.+|++++++++||||+++++++.+
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 99 (322)
T 1p4o_A 21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ- 99 (322)
T ss_dssp BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS-
T ss_pred cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc-
Confidence 334567899999999999999999843 4789999999754332 4579999999999999999999998765
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCC---CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNT---EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~---~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
.+..++||||+++|+|.+++...+.. ......+++..+..++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~ 176 (322)
T 1p4o_A 100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFT 176 (322)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCC
T ss_pred CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCe
Confidence 56789999999999999999753210 00113479999999999999999999998 9999999999999999999
Q ss_pred EEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 679 VRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+||+|||+++..... .....+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~~~ 244 (322)
T 1p4o_A 177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV---------FTTYSDVWSFGVVLWEIATLAEQPYQGL 244 (322)
T ss_dssp EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred EEECcCccccccccccccccccCCCCCCCccChhhhccCC---------CCchhhHHHHHHHHHHHHhcCCCccccC
Confidence 999999999765321 12335678899999875433 4789999999999999999 88898543
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=311.80 Aligned_cols=197 Identities=16% Similarity=0.217 Sum_probs=165.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEec----CCcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMER----ENEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~----~~~~ 605 (766)
.++|...+.||+|+||.||+|.. .+|+.||||++...... ..++.+|++++++++||||+++++++... ....
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 46788999999999999999995 47899999999643322 45788999999999999999999977542 2568
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||++ |+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg 157 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--------MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFG 157 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEeccC-ccHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecc
Confidence 99999998 6999998652 389999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCCC-------------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD-------------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~-------------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....+|+.|+|||.+..... ++.++|||||||++|||++|+.||...
T Consensus 158 ~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~g~~pf~~~ 226 (353)
T 2b9h_A 158 LARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAK--------YSRAMDVWSCGCILAELFLRRPIFPGR 226 (353)
T ss_dssp TCEECC----------------CCCCCCGGGCCHHHHHSCCC--------CCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccccccccccccCccccccchhhccccccccCCeeeccCCC--------ccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99765321 122467999999997643221 578999999999999999999999644
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=315.82 Aligned_cols=276 Identities=20% Similarity=0.228 Sum_probs=191.9
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccC-CcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVI-PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 195 (766)
++|++|++++|.+.+..|..+.. +++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 68999999999998877877765 999999999999998665 5679999999999999999998889999999999999
Q ss_pred EccCCCCCCCCCcc--cCCCCCCCEEeccCCcCCCCCCCC-CCCCCCccEEEccCCCCCCCCccccCCC-----------
Q 004248 196 DLSRNSLTGNIPTS--FGLLKNLSSLDISSNYLTGSIPPG-LGTLSKLQYLNVSNNSLASSIPAQLGDL----------- 261 (766)
Q Consensus 196 ~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l----------- 261 (766)
+|++|++++.+|.. |..+++|++|+|++|.+++..|.. +.++++|++|++++|.+++..|..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999999866655 999999999999999999887876 8999999999999999999888777654
Q ss_pred -----------------------CCCCEEEccCCcCCccCCcccCCC---------------------------------
Q 004248 262 -----------------------DSLVDLDLSMNSLSGSVPSELRGL--------------------------------- 285 (766)
Q Consensus 262 -----------------------~~L~~L~Ls~N~l~g~~p~~l~~l--------------------------------- 285 (766)
++|++|++++|++++.+|..+..+
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 455566666665554444332111
Q ss_pred ------CCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCC
Q 004248 286 ------RSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVN 359 (766)
Q Consensus 286 ------~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 359 (766)
++|+.|++++|.+++.+|. .|..+++|+.|+|++|++++.+|..|..+++|++|+|++|++++..|. .+..+
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 346 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR-MFENL 346 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GGTTC
T ss_pred cccccccCceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh-HhcCc
Confidence 3444444444444433332 234445555555555555554454555555555555555555433332 22334
Q ss_pred CCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCcc
Q 004248 360 TSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 360 ~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g 395 (766)
++|+.|++++|.+.+..|. .+++|+.|||++|++++
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 4455555555555444332 23444555555555544
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=335.44 Aligned_cols=189 Identities=16% Similarity=0.249 Sum_probs=159.7
Q ss_pred ceeecCCcceEEEEEE---cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGIL---EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~---~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
+.||+|+||.||+|.. .+++.||||+++..... .++|.+|+++|++++|||||+++++|.. +..++|||||+
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~--~~~~lv~E~~~ 452 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--ESWMLVMEMAE 452 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEEEEEECCT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--CCEEEEEEccC
Confidence 5799999999999974 35689999999764432 5789999999999999999999998753 46899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++...+ .+++.++..|+.||+.||+|||++ +||||||||+|||++.++.+||+|||+++.....
T Consensus 453 ~g~L~~~l~~~~-------~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~ 522 (635)
T 4fl3_A 453 LGPLNKYLQQNR-------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD 522 (635)
T ss_dssp TEEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-
T ss_pred CCCHHHHHhhCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccC
Confidence 999999997653 389999999999999999999998 9999999999999999999999999999876322
Q ss_pred ------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 ------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....+|..|+|||.+.... ++.++|||||||++|||+| |+.||...
T Consensus 523 ~~~~~~~~~~~~t~~y~APE~~~~~~---------~~~~sDvwSlGv~l~ellt~G~~Pf~~~ 576 (635)
T 4fl3_A 523 ENYYKAQTHGKWPVKWYAPECINYYK---------FSSKSDVWSFGVLMWEAFSYGQKPYRGM 576 (635)
T ss_dssp ------------CGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred ccccccccCCCCceeeeChhhhcCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 12234567899999875433 5789999999999999998 99999543
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-34 Score=301.39 Aligned_cols=201 Identities=15% Similarity=0.196 Sum_probs=166.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-----CHHHHHHHHHHHhhcCCCCcccceeEEEe-cCCcE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-----KTEAYLLELDFFSKVSHARLVPLLGHCME-RENEK 605 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-----~~~~~~~E~~~l~~l~H~niv~l~~~~~~-~~~~~ 605 (766)
.++|...+.||+|+||.||+|.. .+++.||||.+..... ..+.+.+|++++++++||||+++++++.. ..+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 46899999999999999999995 5789999999975431 25679999999999999999999998753 23578
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+++| |.+++..... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg 154 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPE-----KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALG 154 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTT-----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred EEEehhccCC-HHHHHHhCcc-----cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccc
Confidence 9999999976 7777765432 3589999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....+|..|+|||........ .+.++|||||||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-------~~~~~Di~slG~il~~l~~g~~p~~~~ 216 (305)
T 2wtk_C 155 VAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTF-------SGFKVDIWSAGVTLYNITTGLYPFEGD 216 (305)
T ss_dssp TCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCE-------ESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccccCccccccccccCCCCCCCcChhhccCcccC-------CcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 99765321 2234578999999987543221 367999999999999999999999643
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=317.72 Aligned_cols=201 Identities=14% Similarity=0.226 Sum_probs=153.1
Q ss_pred CCc-cceeecCCcceEEEEEEc---CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEe-cCCcEEEEEe
Q 004248 536 FSD-ANLIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCME-RENEKFLVYK 610 (766)
Q Consensus 536 ~~~-~~~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~-~~~~~~lV~E 610 (766)
|+. .++||+|+||.||+|+.. +++.||||++..... .+.+.+|+++|++++|||||++++++.. .+...|+|||
T Consensus 22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e 100 (405)
T 3rgf_A 22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFD 100 (405)
T ss_dssp EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEE
T ss_pred hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEe
Confidence 443 458999999999999954 578999999965432 4578899999999999999999998864 3457899999
Q ss_pred eCCCCChhhhhhccCC--CCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee----CCCCcEEeccc
Q 004248 611 YMPNGDLSSSLYRKTN--TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL----DDKFEVRLGSL 684 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~--~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DF 684 (766)
|++ |+|.+++..... .......+++..++.|+.||+.||+|||+. +|+||||||+|||+ +.++.+||+||
T Consensus 101 ~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Df 176 (405)
T 3rgf_A 101 YAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADM 176 (405)
T ss_dssp CCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECCT
T ss_pred CCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEEC
Confidence 997 588888763221 001123489999999999999999999998 99999999999999 77899999999
Q ss_pred hhhhhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 685 SEVCAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 685 G~a~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+++.... ......+|+.|+|||.+..... ++.++|||||||++|||+||+.||...
T Consensus 177 g~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 177 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARH--------YTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp TCCC----------------CCCTTCCHHHHTTCCS--------CCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred CCceecCCCCcccccCCCceecCcccCchhhcCCCc--------ccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 99986532 2234578999999998765332 578999999999999999999999543
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=310.79 Aligned_cols=205 Identities=20% Similarity=0.269 Sum_probs=168.1
Q ss_pred HhCCCCccceeecCCcceEEEEEEc-CC-----cEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE-GG-----IPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~g-----~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
..++|...+.||+|+||.||+|... ++ +.||||.+..... ..+.+.+|+++++++ +||||+++++++.. +
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~ 122 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH-G 122 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec-C
Confidence 3467889999999999999999853 22 4799999975432 256799999999999 89999999998765 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCC-------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNT-------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~-------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~ 675 (766)
+..++||||+++|+|.+++...... ......+++..+..++.|++.||+|||+. +|+||||||+||+++.
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~ 199 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTN 199 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEG
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECC
Confidence 6899999999999999999753210 00113489999999999999999999998 9999999999999999
Q ss_pred CCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 676 KFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 676 ~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
++.+||+|||+++..... .....+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 200 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~t~g~~p~~~~ 270 (333)
T 2i1m_A 200 GHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV---------YTVQSDVWSYGILLWEIFSLGLNPYPGI 270 (333)
T ss_dssp GGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CCeEEECccccccccccccceeecCCCCCCccccCHHHhccCC---------CChHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 999999999999865322 12345677899999775433 5789999999999999999 99998543
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=305.93 Aligned_cols=196 Identities=17% Similarity=0.279 Sum_probs=159.4
Q ss_pred CCCCccceeecCCcceEEEEEEc-CCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEe-----------
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCME----------- 600 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~----------- 600 (766)
++|...+.||+|+||.||+|... +|+.||||++...... .+++.+|++++++++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 90 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS 90 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence 57888999999999999999964 5899999999755433 5679999999999999999999997632
Q ss_pred --cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CCC
Q 004248 601 --RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DKF 677 (766)
Q Consensus 601 --~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~~ 677 (766)
..+..|+||||++ |+|.+++.+. .+++..+..++.|++.||+|||+. +|+||||||+||+++ +++
T Consensus 91 ~~~~~~~~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~ 158 (320)
T 2i6l_A 91 LTELNSVYIVQEYME-TDLANVLEQG--------PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDL 158 (320)
T ss_dssp CCSCSEEEEEEECCS-EEHHHHHTTC--------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTT
T ss_pred ccccCceeEEeeccC-CCHHHHhhcC--------CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCC
Confidence 2356899999998 6999998642 388999999999999999999998 999999999999997 567
Q ss_pred cEEeccchhhhhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 EVRLGSLSEVCAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ~~kl~DFG~a~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+||+|||+++.... ......+|..|+|||....... ++.++|||||||++|||+||+.||...
T Consensus 159 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~il~el~~g~~pf~~~ 228 (320)
T 2i6l_A 159 VLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNN--------YTKAIDMWAAGCIFAEMLTGKTLFAGA 228 (320)
T ss_dssp EEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTC--------CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eEEEccCccccccCCCcccccccccccccccccCcHHhcCccc--------CCchhhhHhHHHHHHHHHhCCCCCCCC
Confidence 999999999986532 2233456889999997644221 578999999999999999999999644
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=303.70 Aligned_cols=205 Identities=19% Similarity=0.300 Sum_probs=159.5
Q ss_pred HhCCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCC-
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMEREN- 603 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~- 603 (766)
..++|...+.||+|+||.||+|... +++.||||++...... .+++.+|++++++++||||+++++++.....
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3456888899999999999999843 3568999999754332 4579999999999999999999998875332
Q ss_pred ---cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 604 ---EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 604 ---~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
..++||||+++|+|.+++...... .....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~k 187 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLE-TGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVC 187 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBT-TSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhh-cCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEE
Confidence 359999999999999998543210 1224599999999999999999999998 999999999999999999999
Q ss_pred eccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 681 LGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
|+|||+++..... .....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~~g~~p~~~~ 253 (313)
T 3brb_A 188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRV---------YTSKSDVWAFGVTMWEIATRGMTPYPGV 253 (313)
T ss_dssp ECSCSCC----------------CCGGGSCHHHHHSSC---------CCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred EeecCcceecccccccCcccccCCCccccCchhhcCCC---------ccchhhhHHHHHHHHHHHhcCCCCCccC
Confidence 9999999765321 22334577899999875543 4789999999999999999 88888543
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=306.74 Aligned_cols=201 Identities=18% Similarity=0.280 Sum_probs=167.1
Q ss_pred HhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhh--cCCCCcccceeEEEecC---CcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSK--VSHARLVPLLGHCMERE---NEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~~---~~~~ 606 (766)
..++|...+.||+|+||.||+|+. +|+.||||++... ..+.+.+|++++.. ++||||+++++++.... ...+
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~--~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~ 116 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR--EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 116 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG--GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEE
T ss_pred ccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch--hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeE
Confidence 345799999999999999999987 4889999998643 34678889999988 79999999999887643 2689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhc--------cCCCCCeEecCCCCCCeeeCCCCc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH--------HECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
+||||+++|+|.+++.+. .+++.++..++.|++.||+||| +. +|+||||||+||+++.+++
T Consensus 117 lv~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~ 185 (342)
T 1b6c_B 117 LVSDYHEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGT 185 (342)
T ss_dssp EEECCCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSC
T ss_pred EEEeecCCCcHHHHHhcc--------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCC
Confidence 999999999999999753 3899999999999999999999 55 9999999999999999999
Q ss_pred EEeccchhhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcC---------
Q 004248 679 VRLGSLSEVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN--------- 742 (766)
Q Consensus 679 ~kl~DFG~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG--------- 742 (766)
+||+|||+++..... .....+|..|+|||......... ...++.++|||||||++|||+||
T Consensus 186 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~~~~~~~Di~slG~il~el~tg~~~~~~~~~ 262 (342)
T 1b6c_B 186 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMK---HFESFKRADIYAMGLVFWEIARRCSIGGIHED 262 (342)
T ss_dssp EEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTT---CHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCC
T ss_pred EEEEECCCceeccccccccccccccCCcCcccCCHhhhccccccc---ccccCCcccHHHHHHHHHHHHhccCcCCcccc
Confidence 999999999765332 23446899999999875442110 00145799999999999999999
Q ss_pred -CCCCCCC
Q 004248 743 -NHLNLSS 749 (766)
Q Consensus 743 -~~p~~~~ 749 (766)
+.||...
T Consensus 263 ~~~p~~~~ 270 (342)
T 1b6c_B 263 YQLPYYDL 270 (342)
T ss_dssp CCCTTTTT
T ss_pred cccCcccc
Confidence 7788544
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=304.27 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=155.2
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|+..+.||+|+||.||+|+. .+|+.||||++...... .+.+.+|...++.++||||+++++++.+ ++..++|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~-~~~~~lv 84 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR-EGDVWIC 84 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSSEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec-cCCEEEE
Confidence 35788899999999999999995 67999999999654322 2334555566888999999999998875 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||++ |+|.+++..... ....+++..+..++.|++.||+|||++ .+|+||||||+||+++.++.+||+|||+++
T Consensus 85 ~e~~~-~~l~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 158 (290)
T 3fme_A 85 MELMD-TSLDKFYKQVID---KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGISG 158 (290)
T ss_dssp EECCS-EEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCCEEBCCC----
T ss_pred Eehhc-cchHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCCEEEeecCCcc
Confidence 99998 598888764211 113599999999999999999999984 289999999999999999999999999998
Q ss_pred hcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
..... .....+|+.|+|||.+.....+. .++.++||||+||++|||+||+.||..
T Consensus 159 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~-----~~~~~~Di~slG~il~~l~~g~~p~~~ 215 (290)
T 3fme_A 159 YLVDDVAKDIDAGCKPYMAPERINPELNQK-----GYSVKSDIWSLGITMIELAILRFPYDS 215 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC-------CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred cccccccccccCCCccccChhhcChhhcCc-----CCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence 66332 23346899999999863221111 157899999999999999999999964
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=304.12 Aligned_cols=192 Identities=19% Similarity=0.292 Sum_probs=160.3
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEec----------
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER---------- 601 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~---------- 601 (766)
.++|+..+.||+|+||.||+|+. .+|+.||||++.......+.+.+|++++++++||||+++++++.+.
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 45688999999999999999995 5799999999976554567899999999999999999999987642
Q ss_pred --CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 602 --ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 602 --~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
.+..|+||||+++|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~ 155 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYDLIHSEN------LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNV 155 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHHHHHHSC------GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCE
T ss_pred ccCCceEEEEecCCCCCHHHhhhccc------cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCE
Confidence 246899999999999999997543 2478999999999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcCC-----------------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 680 RLGSLSEVCAQGG-----------------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 680 kl~DFG~a~~~~~-----------------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
||+|||+++.... ......+|..|+|||....... ++.++|||||||++|||++
T Consensus 156 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~ 226 (303)
T 1zy4_A 156 KIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGH--------YNEKIDMYSLGIIFFEMIY 226 (303)
T ss_dssp EECCCCCCSCTTC-------------------------CTTSCHHHHTSCSC--------CCTHHHHHHHHHHHHHHHS
T ss_pred EEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCC--------CcchhhHHHHHHHHHHHHh
Confidence 9999999876531 1233467899999998754321 5789999999999999998
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=303.13 Aligned_cols=195 Identities=16% Similarity=0.244 Sum_probs=162.0
Q ss_pred CCCCccc-eeecCCcceEEEEEE---cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDAN-LIKNGHSGDLFRGIL---EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~-~ig~G~~g~Vy~~~~---~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
++|...+ .||+|+||.||+|.. .+++.||||++...... .+++.+|++++++++||||+++++++ . .+..+
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~-~~~~~ 93 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-E-AESWM 93 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-E-SSSEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-C-CCCcE
Confidence 4566666 999999999999963 34789999999754322 56799999999999999999999987 3 45789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++...+ .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 94 lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~ 163 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGL 163 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred EEEEeCCCCCHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCc
Confidence 9999999999999997653 389999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 687 VCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
++...... ....++..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 224 (291)
T 1xbb_A 164 SKALRADENYYKAQTHGKWPVKWYAPECINYYK---------FSSKSDVWSFGVLMWEAFSYGQKPYRGM 224 (291)
T ss_dssp CEECCTTCSEEEC----CCCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred ceeeccCCCcccccccCCCCceeeChHHhccCC---------CChhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 97653321 1223467899999875333 4789999999999999999 99999543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=333.33 Aligned_cols=285 Identities=19% Similarity=0.249 Sum_probs=249.1
Q ss_pred hhhhccCCCCCEEecCCCCCCC-----------------CCchhhh-hCCCCCCEEEccCCCCCccCCcccCCCCCCcEE
Q 004248 110 ADALVNLTHLASFNASRFLLPG-----------------SIPDWLG-QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSL 171 (766)
Q Consensus 110 ~~~l~~l~~L~~L~ls~n~l~g-----------------~ip~~~~-~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L 171 (766)
|..+.++++|+.|++++|.+.| .+|+.++ .++++|++|+|++|.+.+.+|..|+++++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4578999999999999999999 4999875 239999999999999999999999999999999
Q ss_pred EeecCc-CCC-CCCccccCCC-------CCCEEEccCCCCCCCCCc--ccCCCCCCCEEeccCCcCCCCCCCCCCCCCCc
Q 004248 172 YLSDNG-LTG-TIPSSLGQLS-------VLSVLDLSRNSLTGNIPT--SFGLLKNLSSLDISSNYLTGSIPPGLGTLSKL 240 (766)
Q Consensus 172 ~Ls~N~-l~~-~~p~~l~~L~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 240 (766)
+|++|+ ++| .+|..+++++ +|++|+|++|+++ .+|. .|+++++|+.|+|++|.++ .+| .++++++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 999998 998 8898776665 9999999999999 8998 9999999999999999999 888 89999999
Q ss_pred cEEEccCCCCCCCCccccCCCCC-CCEEEccCCcCCccCCcccCCCCC--CCEEEccCccCccccCCCc--cC--CCCcc
Q 004248 241 QYLNVSNNSLASSIPAQLGDLDS-LVDLDLSMNSLSGSVPSELRGLRS--LQKFVIGNNFLSGNLSVNL--FP--TVSQL 313 (766)
Q Consensus 241 ~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~~p~~l~~l~~--L~~L~ls~N~l~g~~~~~~--~~--~l~~L 313 (766)
+.|+|++|+++ .+|..+.++++ |++|+|++|+++ .+|..+..++. |+.|++++|.++|.+|.-. .. .+.+|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 99999999998 89999999999 999999999999 78988887765 9999999999998765321 11 34589
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCC-------CCcEEEccCCcCccCCCc-----CCC
Q 004248 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNT-------STVELNISQNMFYGGLTP-----VLG 381 (766)
Q Consensus 314 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~-------~l~~L~ls~N~l~g~~~~-----~l~ 381 (766)
+.|+|++|+++..++..+..+++|+.|+|++|+++ .+|...+.... +|+.|+|++|.+. .+|. .++
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 99999999999665555668999999999999999 77765544332 8999999999998 6664 467
Q ss_pred CCCEEeccCCcCccccChhhh
Q 004248 382 RFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 382 ~l~~ldLs~N~l~g~~p~~~~ 402 (766)
+|+.|+|++|++++ +|..+.
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~ 773 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPL 773 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGG
T ss_pred CcCEEEeCCCCCCc-cchhhh
Confidence 89999999999998 787664
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=313.52 Aligned_cols=298 Identities=22% Similarity=0.253 Sum_probs=181.8
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.+++.+++++.... .+.+..+.++++|++|++++|.+.+..|..+.. +++|++|||++|.+++ +|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYIS-------ELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLVK-ISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCC-------CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCCE-EECC--CC
T ss_pred ccccEEECCCCccc-------ccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCceee-cCcc--cc
Confidence 35566666654321 112345667777777777777776655666644 7777777777777763 4444 67
Q ss_pred CCCcEEEeecCcCCC-CCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCC--CEEeccCCcC--CCCCCCCCCCCC--
Q 004248 166 TNLTSLYLSDNGLTG-TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNL--SSLDISSNYL--TGSIPPGLGTLS-- 238 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-- 238 (766)
++|++|+|++|++++ .+|..++++++|++|+|++|++++ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 777777777777765 456777777777777777777765 345556666 7777777777 566666655533
Q ss_pred --------------------------------------------------------------------------------
Q 004248 239 -------------------------------------------------------------------------------- 238 (766)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (766)
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence
Q ss_pred -CccEEEccCCCCCCCCcccc-----CCCCCCCEEEccCCcCCccCC-cc-------------------------cCCCC
Q 004248 239 -KLQYLNVSNNSLASSIPAQL-----GDLDSLVDLDLSMNSLSGSVP-SE-------------------------LRGLR 286 (766)
Q Consensus 239 -~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~g~~p-~~-------------------------l~~l~ 286 (766)
+|++|++++|+++|.+|..+ +++++|+.+++++|.+ .+| .. +..++
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 45555555555555566555 5555555555555544 222 11 14556
Q ss_pred CCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC--CCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcE
Q 004248 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG--PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVE 364 (766)
Q Consensus 287 ~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~ 364 (766)
+|++|++++|.+++.+|.. +..+++|+.|+|++|++++ .+|..+..+++|++|++++|++++.+|...+...++|+.
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred cccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 6666666666666555543 3566666666666666665 344556666666666666666666555544445566666
Q ss_pred EEccCCcCccCCCcCC-CCCCEEeccCCcCccccChhh
Q 004248 365 LNISQNMFYGGLTPVL-GRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 365 L~ls~N~l~g~~~~~l-~~l~~ldLs~N~l~g~~p~~~ 401 (766)
|++++|.+++.+|..+ .+|+.|||++|+++ .+|..+
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGG
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhh
Confidence 6666666666665554 46666666666666 555544
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=307.90 Aligned_cols=196 Identities=17% Similarity=0.317 Sum_probs=165.7
Q ss_pred CCCCccceeecCCcceEEEEEE-----cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecC-CcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERE-NEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-----~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~ 606 (766)
++|+..+.||+|+||.||+|+. .+|+.||||++...... .+++.+|++++++++||||+++++++...+ ...+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 4578889999999999999983 46899999999764332 568999999999999999999999876532 3689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 121 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~ 191 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQKHKE------RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGL 191 (326)
T ss_dssp EEECCCTTCBHHHHHHHSTT------SSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTT
T ss_pred EEEECCCCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcc
Confidence 99999999999999976532 489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 687 VCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 687 a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
++...... ....++..|+|||...... ++.++|||||||++|||+||+.|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~tg~~~~~ 249 (326)
T 2w1i_A 192 TKVLPQDKEYYKVKEPGESPIFWYAPESLTESK---------FSVASDVWSFGVVLYELFTYIEKSK 249 (326)
T ss_dssp CEECCSSCSEEECSSCCSCCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred hhhccccccccccccCCCCceeEECchhhcCCC---------CCchhhHHHHHHHHHHHHhcCCCCC
Confidence 98763321 2234567799999875433 4789999999999999999999885
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=308.82 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=168.3
Q ss_pred CCCCccceeecCCcceEEEEEEc-CC-cEEEEEEeeccccCHHHHHHHHHHHhhcCCCC------cccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE-GG-IPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR------LVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~-~g-~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~n------iv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|... ++ +.||||+++......+.+.+|++++++++|++ ++.+++++.. .+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 97 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF-HGHM 97 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE-TTEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee-CCeE
Confidence 67899999999999999999953 44 78999999765445678899999999998766 8888887665 5689
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee------------
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL------------ 673 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl------------ 673 (766)
++||||+ +|+|.+++..... ..+++.++..++.||+.||+|||+. +|+||||||+|||+
T Consensus 98 ~lv~e~~-~~~l~~~l~~~~~-----~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~ 168 (355)
T 2eu9_A 98 CIAFELL-GKNTFEFLKENNF-----QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEH 168 (355)
T ss_dssp EEEEECC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC
T ss_pred EEEEecc-CCChHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccc
Confidence 9999999 5688887765432 3489999999999999999999998 99999999999999
Q ss_pred -------CCCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 674 -------DDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 674 -------~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+.++.+||+|||+++..........+|+.|+|||.+.... ++.++|||||||++|||+||+.||
T Consensus 169 ~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~g~~pf 239 (355)
T 2eu9_A 169 KSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELG---------WAQPCDVWSIGCILFEYYRGFTLF 239 (355)
T ss_dssp -CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred ccccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCC---------CCCccchHHHHHHHHHHHhCCCCC
Confidence 5678999999999987766666678999999999876543 478999999999999999999999
Q ss_pred CCC
Q 004248 747 LSS 749 (766)
Q Consensus 747 ~~~ 749 (766)
...
T Consensus 240 ~~~ 242 (355)
T 2eu9_A 240 QTH 242 (355)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=306.34 Aligned_cols=200 Identities=22% Similarity=0.288 Sum_probs=167.7
Q ss_pred HhCCCCccceeecCCcceEEEEEE--cCCcEEEEEEeeccccC---HHHHHHHHHHHhhc---CCCCcccceeEEEe---
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL--EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKV---SHARLVPLLGHCME--- 600 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~--~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l---~H~niv~l~~~~~~--- 600 (766)
+.++|+..+.||+|+||.||+|.. .+|+.||||++...... ...+.+|+++++++ +||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457799999999999999999996 46889999999654322 34677888888776 89999999998762
Q ss_pred -cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcE
Q 004248 601 -RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEV 679 (766)
Q Consensus 601 -~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~ 679 (766)
.....++||||++ |+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~ 159 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPE-----PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQI 159 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCE
T ss_pred CCCceEEEEEecCC-CCHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCE
Confidence 2346899999998 699999976532 2489999999999999999999998 99999999999999999999
Q ss_pred EeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 680 RLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 680 kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+|||+++.... ......+|..|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 160 kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 222 (326)
T 1blx_A 160 KLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS---------YATPVDLWSVGCIFAEMFRRKPLFRGS 222 (326)
T ss_dssp EECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred EEecCcccccccCCCCccccccccceeCHHHHhcCC---------CCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence 9999999976532 223456789999999876543 478999999999999999999999543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=320.58 Aligned_cols=164 Identities=20% Similarity=0.217 Sum_probs=119.6
Q ss_pred CCccceeecC-------------CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCC
Q 004248 76 LVWNGVRCQN-------------GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLP 142 (766)
Q Consensus 76 ~~W~gv~C~~-------------~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~ 142 (766)
|.|.|| |+. .+++.+++++..... ..+..+.++++|++|++++|.+.+..|..+.. ++
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~ 74 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-------IGHGDLRACANLQVLILKSSRINTIEGDAFYS-LG 74 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCc-------cChhhhhcCCcccEEECCCCCcCccChhhccc-cc
Confidence 379998 862 146777777654321 11235778888888888888887766666654 88
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCC-CCCccccCCCCCCEEEccCCCCCCCCC-cccCCCCCCCEEe
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTG-TIPSSLGQLSVLSVLDLSRNSLTGNIP-TSFGLLKNLSSLD 220 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ 220 (766)
+|++|||++|.+++..|..|+++++|++|+|++|.+++ ..|..++++++|++|++++|++.+.+| ..|.++++|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 88888888888888777778888888888888888876 356778888888888888888544554 5788888888888
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCC
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNN 248 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 248 (766)
+++|.+++..|..++++++|++|++++|
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ccCCcccccChhhhhccccCceEecccC
Confidence 8888888877777766544444433333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=311.94 Aligned_cols=312 Identities=18% Similarity=0.155 Sum_probs=274.5
Q ss_pred CccceeecCC-----------CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCC
Q 004248 77 VWNGVRCQNG-----------SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQ 145 (766)
Q Consensus 77 ~W~gv~C~~~-----------~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~ 145 (766)
.|..|.|... .+..++|++.... .+.+..+.++++|+.|++++|.+.+..|..+.. +++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~ 83 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-------TLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLR 83 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCC-------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccc-------eECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCC
Confidence 5788888632 3566777664432 122357889999999999999998877877765 99999
Q ss_pred EEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCc
Q 004248 146 ALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225 (766)
Q Consensus 146 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 225 (766)
+|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|+.|+|++|.
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 99999999998877889999999999999999999889999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCC
Q 004248 226 LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN 305 (766)
Q Consensus 226 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~ 305 (766)
+++..+..+.++++|+.|+|++|.+.+..+..+.++++|++|++++|.+.+.+|.......+|+.|++++|.++ .+|..
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 242 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHH
Confidence 99776677999999999999999999988889999999999999999999988888877889999999999998 46666
Q ss_pred ccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCC
Q 004248 306 LFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGR 382 (766)
Q Consensus 306 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~ 382 (766)
.|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|. .+..+.+|+.|++++|.+++..+. .+++
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-HhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 678999999999999999999999999999999999999999987775 446678999999999999875543 4578
Q ss_pred CCEEeccCCcCccccC
Q 004248 383 FRLVDLSGNYFEGRVP 398 (766)
Q Consensus 383 l~~ldLs~N~l~g~~p 398 (766)
|+.|+|++|++++..+
T Consensus 322 L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 322 LETLILDSNPLACDCR 337 (477)
T ss_dssp CCEEECCSSCEECSGG
T ss_pred cCEEEccCCCccCccc
Confidence 9999999999987654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=314.29 Aligned_cols=277 Identities=21% Similarity=0.219 Sum_probs=178.9
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++|+.|++++|.+.+-.|..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 56666777776666544445543 667777777777776666666666777777777777766 45554 566677777
Q ss_pred ccCCCCCC-CCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCc--cEEEccCCCC--CCCCccccCCCC---------
Q 004248 197 LSRNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKL--QYLNVSNNSL--ASSIPAQLGDLD--------- 262 (766)
Q Consensus 197 Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~--------- 262 (766)
|++|++++ .+|..|+++++|++|+|++|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 77776665 3356666677777777777666542 23334444 6666666666 555554444322
Q ss_pred ------------------------------------------------------------------------CCCEEEcc
Q 004248 263 ------------------------------------------------------------------------SLVDLDLS 270 (766)
Q Consensus 263 ------------------------------------------------------------------------~L~~L~Ls 270 (766)
+|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 45556666
Q ss_pred CCcCCccCCccc-----------------------------------------------------CCCCCCCEEEccCcc
Q 004248 271 MNSLSGSVPSEL-----------------------------------------------------RGLRSLQKFVIGNNF 297 (766)
Q Consensus 271 ~N~l~g~~p~~l-----------------------------------------------------~~l~~L~~L~ls~N~ 297 (766)
+|+++|.+|..+ ..+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 666666555544 566777777777777
Q ss_pred CccccCCCccCCCCcccEEEccCCCCCCCC--CcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccC
Q 004248 298 LSGNLSVNLFPTVSQLQIIVLRQNGFTGPP--PDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGG 375 (766)
Q Consensus 298 l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~ 375 (766)
+++.+|.. +..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|...+....+|+.|++++|.+++.
T Consensus 365 l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 365 FTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred cccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 77655543 366777777777777777643 456777777777777777777666665555667777777777777777
Q ss_pred CCcCC-CCCCEEeccCCcCccccChhhh
Q 004248 376 LTPVL-GRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 376 ~~~~l-~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
+|..+ .+|+.|||++|+++ .+|..+.
T Consensus 444 ~~~~l~~~L~~L~L~~N~l~-~ip~~~~ 470 (562)
T 3a79_B 444 VFRCLPPKVKVLDLHNNRIM-SIPKDVT 470 (562)
T ss_dssp GGSSCCTTCSEEECCSSCCC-CCCTTTT
T ss_pred hhhhhcCcCCEEECCCCcCc-ccChhhc
Confidence 66666 47777777777776 5665543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=312.01 Aligned_cols=293 Identities=20% Similarity=0.186 Sum_probs=234.7
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCc-cCCcccCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISG-VIPFSLGN 164 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~~ 164 (766)
.+...+++++.... .+.+..+.++++|++|++++|.+. .+|.. .+++|++|+|++|.+++ .+|..|++
T Consensus 45 ~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 45 SKLRILIISHNRIQ-------YLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGN 113 (520)
T ss_dssp TTCCEEECCSSCCC-------EEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred ccccEEecCCCccC-------CcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhcc
Confidence 46778888875432 223457899999999999999997 68876 49999999999999998 58899999
Q ss_pred CCCCcEEEeecCcCCCCCCccccCCCCC--CEEEccCCCC--CCCCCcccCCCC--------------------------
Q 004248 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVL--SVLDLSRNSL--TGNIPTSFGLLK-------------------------- 214 (766)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L--~~L~Ls~N~l--~~~~p~~~~~l~-------------------------- 214 (766)
+++|++|+|++|.+++ ..+..+++| ++|++++|.+ .+..|..+..++
T Consensus 114 l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 190 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190 (520)
T ss_dssp CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS
T ss_pred CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc
Confidence 9999999999999986 456777777 9999999998 777777776643
Q ss_pred ---------------------------------------------------------CCCEEeccCCcCCCCCCCCC---
Q 004248 215 ---------------------------------------------------------NLSSLDISSNYLTGSIPPGL--- 234 (766)
Q Consensus 215 ---------------------------------------------------------~L~~L~Ls~N~l~~~~p~~l--- 234 (766)
+|++|++++|.++|.+|..+
T Consensus 191 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp EEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC
T ss_pred ceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc
Confidence 78888888888888999888
Q ss_pred --CCCCCccEEEccCCCCCCCCcc-c-------------------------cCCCCCCCEEEccCCcCCccCCcccCCCC
Q 004248 235 --GTLSKLQYLNVSNNSLASSIPA-Q-------------------------LGDLDSLVDLDLSMNSLSGSVPSELRGLR 286 (766)
Q Consensus 235 --~~l~~L~~L~Ls~N~l~~~~p~-~-------------------------l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 286 (766)
+++++|+.+++++|.+ .+|. . +..+++|++|++++|++++.+|..+++++
T Consensus 271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 348 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348 (520)
T ss_dssp CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCC
Confidence 7787777777777776 3341 1 15778899999999999888888888899
Q ss_pred CCCEEEccCccCcc--ccCCCccCCCCcccEEEccCCCCCCCCCc-ccCCCCCCCEEEccCCCCCCCCCcccccCCCCCc
Q 004248 287 SLQKFVIGNNFLSG--NLSVNLFPTVSQLQIIVLRQNGFTGPPPD-VLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTV 363 (766)
Q Consensus 287 ~L~~L~ls~N~l~g--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~ 363 (766)
+|++|++++|.+++ .+|. .+..+++|+.|++++|++++.+|. .+..+++|+.|++++|++++.+|... ..+|+
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~ 424 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIK 424 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCC
T ss_pred CCCEEEccCCccCccccchH-HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh---cccCC
Confidence 99999999998875 3333 347788899999999999885554 47888899999999999887777543 26788
Q ss_pred EEEccCCcCccCCCc---CCCCCCEEeccCCcCccccChh
Q 004248 364 ELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGRVPEY 400 (766)
Q Consensus 364 ~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~~p~~ 400 (766)
.|++++|.++ .+|. .+++|+.|||++|+++ .+|..
T Consensus 425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 8999999887 6664 4678889999999888 46655
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.61 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=166.1
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
.++|+..++||+|+||.||+|+. .+++.||||++..... .+++.+|+++++.++|++.+..+.++....+..++||||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~ 84 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL 84 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence 36789999999999999999995 6799999998865433 345889999999999866666565555556788999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee---CCCCcEEeccchhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL---DDKFEVRLGSLSEVC 688 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl---~~~~~~kl~DFG~a~ 688 (766)
+ +|+|.+++.... ..++|.+++.|+.||+.||+|||+. +||||||||+|||+ +.++.+||+|||+++
T Consensus 85 ~-g~sL~~ll~~~~------~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~ 154 (483)
T 3sv0_A 85 L-GPSLEDLFNFCS------RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK 154 (483)
T ss_dssp C-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred C-CCCHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcce
Confidence 9 899999997533 2499999999999999999999998 99999999999999 688999999999998
Q ss_pred hcCCCC----------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDA----------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~----------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
...... ....+|..|+|||...... ++.++|||||||++|||++|+.||...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~---------~s~~sDvwSlGvil~elltG~~Pf~~~ 216 (483)
T 3sv0_A 155 KYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIE---------QSRRDDLESLGYVLMYFLRGSLPWQGL 216 (483)
T ss_dssp ECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred eccCCccccccccccccccCCCccccCHHHhcCCC---------CChHHHHHHHHHHHHHHHhCCCCCccc
Confidence 763321 1457899999999876554 478999999999999999999999653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=318.06 Aligned_cols=266 Identities=22% Similarity=0.173 Sum_probs=134.7
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 192 (766)
+.++++|+.|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 344455555555555544433333332 4555555555555554444444555555555555555543333334455555
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 004248 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 193 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 272 (766)
++|+|++|.+++..|..|+++++|+.|+|++|.+++.. ++.+++|+.|++++|.+++ +...++|+.|++++|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 221 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCC
Confidence 55555555555444444555555555555555544321 2233334444444443332 112233444444444
Q ss_pred cCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC
Q 004248 273 SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 273 ~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
.++...+ .+ .++|+.|++++|.+++. ..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|++++ +|
T Consensus 222 ~l~~~~~-~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~ 294 (597)
T 3oja_B 222 SINVVRG-PV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN 294 (597)
T ss_dssp CCCEEEC-SC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EE
T ss_pred ccccccc-cc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CC
Confidence 4442211 11 24566666666666642 234556666666666666666666666666666666666666664 33
Q ss_pred cccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCccc
Q 004248 353 NSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGR 396 (766)
Q Consensus 353 ~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~ 396 (766)
.. ...+++|+.|+|++|.+. .+|. .+++|+.|+|++|.+++.
T Consensus 295 ~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 295 LY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cc-cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence 22 233456666666666665 3443 245666666666666543
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=312.48 Aligned_cols=199 Identities=18% Similarity=0.269 Sum_probs=168.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-----------CCCcccceeEEEec
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-----------HARLVPLLGHCMER 601 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-----------H~niv~l~~~~~~~ 601 (766)
++|...+.||+|+||.||+|+. .+++.||||++.......+.+.+|++++++++ ||||+++++++...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 98 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence 5788999999999999999995 67999999999765555678899999999986 89999999987653
Q ss_pred C---CcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC----
Q 004248 602 E---NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD---- 674 (766)
Q Consensus 602 ~---~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~---- 674 (766)
. ...++||||+ +|+|.+++..... ..+++..+..++.||+.||+|||+++ +|+||||||+|||++
T Consensus 99 ~~~~~~~~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~ 170 (373)
T 1q8y_A 99 GPNGVHVVMVFEVL-GENLLALIKKYEH-----RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDS 170 (373)
T ss_dssp ETTEEEEEEEECCC-CEEHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEET
T ss_pred CCCCceEEEEEecC-CCCHHHHHHHhhc-----cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCC
Confidence 2 2689999999 8899999976432 34899999999999999999999842 799999999999994
Q ss_pred --CCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 675 --DKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 675 --~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..+.+||+|||+++..........+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 171 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~el~~g~~pf~~~ 238 (373)
T 1q8y_A 171 PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAP---------WGCGADIWSTACLIFELITGDFLFEPD 238 (373)
T ss_dssp TTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCC---------CCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred CcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCC---------CCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 445899999999987766666668899999999876544 478999999999999999999999643
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=297.20 Aligned_cols=196 Identities=15% Similarity=0.250 Sum_probs=168.5
Q ss_pred hCCCCccceeecCCcceEEEEEEc-CCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|+..+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|++++++++||||+++++++.. .+..++|
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv 99 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-SSSFYIV 99 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeC-CCeEEEE
Confidence 357999999999999999999964 789999999975433 36789999999999999999999998765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC---CcEEeccch
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK---FEVRLGSLS 685 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl~DFG 685 (766)
|||+++|+|.+++.... .+++.++..++.|++.||+|||+. +|+||||||+||+++.+ +.+||+|||
T Consensus 100 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg 169 (287)
T 2wei_A 100 GELYTGGELFDEIIKRK-------RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFG 169 (287)
T ss_dssp ECCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTT
T ss_pred EEccCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccC
Confidence 99999999999987543 389999999999999999999998 99999999999999764 469999999
Q ss_pred hhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+++..... .....+|..|+|||...+. ++.++|||||||++|||+||+.||...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----------~~~~~Di~slG~~l~~l~~g~~p~~~~ 225 (287)
T 2wei_A 170 LSTCFQQNTKMKDRIGTAYYIAPEVLRGT----------YDEKCDVWSAGVILYILLSGTPPFYGK 225 (287)
T ss_dssp GGGTBCCCSSCSCHHHHHTTCCHHHHTTC----------CCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cceeecCCCccccccCcccccChHHhcCC----------CCCchhhHhHHHHHHHHHhCCCCCCCC
Confidence 99876432 2344678899999976432 478999999999999999999999543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=297.78 Aligned_cols=271 Identities=20% Similarity=0.183 Sum_probs=152.4
Q ss_pred CCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEE
Q 004248 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 195 (766)
+++++.|++++|.+ +.+|+.+...+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 44555555555544 23444433335555555555555555555555555555555555555555445555555555555
Q ss_pred EccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCcccc----------------C
Q 004248 196 DLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL----------------G 259 (766)
Q Consensus 196 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----------------~ 259 (766)
+|++|+++...+..|.++++|++|+|++|.+++..|..+..+++|++|++++|++++.....+ .
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 555555553333334555555555555555555444555555555555555555544321111 1
Q ss_pred CCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCE
Q 004248 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339 (766)
Q Consensus 260 ~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 339 (766)
..++|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.
T Consensus 203 ~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 123445555555555432 221 235677777777777653 23466777777777777777777777777777777
Q ss_pred EEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCccc
Q 004248 340 LDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGR 396 (766)
Q Consensus 340 L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~ 396 (766)
|+|++|++++ +|.. ....++|+.|++++|.+.+ +|. .+++|+.|+|++|+++..
T Consensus 277 L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 277 LYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp EECCSSCCCE-EECS-SSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred EECCCCcCcc-cCcc-cCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee
Confidence 7777777764 3322 2345677777777777763 333 346777777777777643
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=306.49 Aligned_cols=198 Identities=17% Similarity=0.204 Sum_probs=168.6
Q ss_pred HhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-------HHHHHHHHHHHhhcC--CCCcccceeEEEec
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-------TEAYLLELDFFSKVS--HARLVPLLGHCMER 601 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-------~~~~~~E~~~l~~l~--H~niv~l~~~~~~~ 601 (766)
..++|+..+.||+|+||.||+|+. .+++.||||++...... .+++.+|++++++++ ||||+++++++..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~- 119 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER- 119 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC-
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec-
Confidence 346788999999999999999984 67899999999764322 246788999999996 5999999998765
Q ss_pred CCcEEEEEeeCCC-CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CCCcE
Q 004248 602 ENEKFLVYKYMPN-GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DKFEV 679 (766)
Q Consensus 602 ~~~~~lV~Ey~~~-GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~ 679 (766)
++..++||||+.+ ++|.+++.+.. .+++..+..++.|++.||+|||+. +|+||||||+|||++ +++.+
T Consensus 120 ~~~~~lv~e~~~~~~~L~~~l~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~ 189 (320)
T 3a99_A 120 PDSFVLILERPEPVQDLFDFITERG-------ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGEL 189 (320)
T ss_dssp SSEEEEEEECCSSEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEE
T ss_pred CCcEEEEEEcCCCCccHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCE
Confidence 5689999999986 89999997653 389999999999999999999998 999999999999999 78999
Q ss_pred EeccchhhhhcCCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 680 RLGSLSEVCAQGGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 680 kl~DFG~a~~~~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+|||+++..... .....+|..|+|||......+ .+.++|||||||++|||+||+.||..
T Consensus 190 kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~Di~slG~il~el~~g~~pf~~ 251 (320)
T 3a99_A 190 KLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRY--------HGRSAAVWSLGILLYDMVCGDIPFEH 251 (320)
T ss_dssp EECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCB--------CHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred EEeeCccccccccccccCCCCCccCCChHHhccCCC--------CCccchHHhHHHHHHHHHHCCCCCCC
Confidence 99999999876432 344568999999998754432 36789999999999999999999953
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=315.53 Aligned_cols=305 Identities=18% Similarity=0.136 Sum_probs=228.6
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
.++.+++++.... .+.+..+.++++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|++++
T Consensus 34 ~l~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLP-------TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TCCEEECTTCCCS-------EECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcEEEccCCccC-------cCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccc
Confidence 4566677664432 122346777888888888888877766766654 88888888888888887788888888
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCcc--EEE
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQ--YLN 244 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~--~L~ 244 (766)
+|++|+|++|++++..|..+.++++|++|+|++|++++..+..+..+++|+.|+|++|.+++..|..++.+++|+ .|+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 888888888888876677788888888888888888764434444588888888888888776677777777777 778
Q ss_pred ccCCCCCCCCccccCCC---------------------------------------------------CCCCEEEccCCc
Q 004248 245 VSNNSLASSIPAQLGDL---------------------------------------------------DSLVDLDLSMNS 273 (766)
Q Consensus 245 Ls~N~l~~~~p~~l~~l---------------------------------------------------~~L~~L~Ls~N~ 273 (766)
+++|.+++..|..+... .+|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 88888777666544321 056777777777
Q ss_pred CCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCc
Q 004248 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPN 353 (766)
Q Consensus 274 l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 353 (766)
+++..+..|+++++|++|++++|.++ .+|.. +..+++|+.|++++|++++.+|..+..+++|++|++++|.+.+.+|.
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred cCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 87777777888888888888888887 56655 36778888888888888888888888888888888888888888877
Q ss_pred ccccCCCCCcEEEccCCcCccCC--C---cCCCCCCEEeccCCcCccccChhh
Q 004248 354 SRSNVNTSTVELNISQNMFYGGL--T---PVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 354 ~~~~~~~~l~~L~ls~N~l~g~~--~---~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
..+..+++|++|++++|.+.+.. + ..+++|+.|++++|.+++..|..+
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 66667788888888888887643 2 346778888888888887777655
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=315.66 Aligned_cols=302 Identities=22% Similarity=0.252 Sum_probs=247.2
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
.+..+++++.... . +.+..+.++++|+.|++++|.+. .+|+.+.. +++|++|+|++|.+++..|..+.+++
T Consensus 255 ~L~~L~l~~n~l~---~----~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 255 SVESINLQKHYFF---N----ISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp EEEEEECTTCCCS---S----CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred ceeEEEeecCccC---c----cCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccC
Confidence 4677777765432 1 12235778889999999998886 78887754 88999999999999888888889999
Q ss_pred CCcEEEeecCcCCCCCCcc-ccCCCCCCEEEccCCCCCCCC--CcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEE
Q 004248 167 NLTSLYLSDNGLTGTIPSS-LGQLSVLSVLDLSRNSLTGNI--PTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYL 243 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 243 (766)
+|++|+|++|.+.+.+|.. +.++++|++|++++|++++.. |..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 9999999999888777654 888999999999999988765 7788889999999999999888888888899999999
Q ss_pred EccCCCCCCCCccc-cCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccc-cC-CCccCCCCcccEEEccC
Q 004248 244 NVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN-LS-VNLFPTVSQLQIIVLRQ 320 (766)
Q Consensus 244 ~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~-~~-~~~~~~l~~L~~L~L~~ 320 (766)
++++|++++..|.. +.++++|++|++++|.+++..|..+.++++|++|++++|.+++. ++ ...+..+++|+.|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 99999988776654 88889999999999999888888888999999999999988763 22 24467888999999999
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcC---CCCCCEEeccCCcCcccc
Q 004248 321 NGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV---LGRFRLVDLSGNYFEGRV 397 (766)
Q Consensus 321 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~---l~~l~~ldLs~N~l~g~~ 397 (766)
|++++.+|..|..+++|+.|+|++|++++..|... .....+ .|++++|.+++..|.. +++|+.|++++|++++..
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL-SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG-TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHh-Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 99998888889999999999999999988777544 456777 8999999998766643 568889999999998876
Q ss_pred Ch
Q 004248 398 PE 399 (766)
Q Consensus 398 p~ 399 (766)
+.
T Consensus 564 ~~ 565 (606)
T 3t6q_A 564 SN 565 (606)
T ss_dssp GG
T ss_pred Cc
Confidence 63
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=302.19 Aligned_cols=205 Identities=17% Similarity=0.187 Sum_probs=148.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHH-HHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELD-FFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||.||+|.. .+|+.||||++...... ..++.+|+. +++.++||||+++++++.. ++..++||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~-~~~~~lv~ 100 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFR-EGDCWICM 100 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEEC-SSEEEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEe-CCceEEEE
Confidence 6788899999999999999996 57999999999764322 345666666 7778899999999998876 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++ +|.+++..... .....+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||+|||+++.
T Consensus 101 e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYS--VLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp CCCSE-EHHHHHHHHHH--TTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred eecCC-ChHHHHHHHHh--hhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 99985 88887753110 0013489999999999999999999984 3799999999999999999999999999976
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....+|..|+|||.......+. .++.++|||||||++|||+||+.||...
T Consensus 176 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~-----~~~~~~Di~slG~il~~l~~g~~pf~~~ 232 (327)
T 3aln_A 176 LVDSIAKTRDAGCRPYMAPERIDPSASRQ-----GYDVRSDVWSLGITLYELATGRFPYPKW 232 (327)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred cccccccccCCCCccccCceeeccccCcC-----CCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence 5332 23346899999999874321111 1578999999999999999999999643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=310.87 Aligned_cols=295 Identities=18% Similarity=0.192 Sum_probs=214.2
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.+++.+++++.... . +.+..+.++++|++|++++|.+.+-.|..+.. +++|++|||++|.++ .+|.. .+
T Consensus 52 ~~L~~L~Ls~N~i~---~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSIS---E----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp TTCCEEECCSSCCC---C----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCcCEEECCCCCcc---c----cChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--cc
Confidence 45777888765432 1 22346788888999999988888766766654 888899999988888 45555 78
Q ss_pred CCCcEEEeecCcCCC-CCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCC--CEEeccCCcC--CCCCCCCCCCCC--
Q 004248 166 TNLTSLYLSDNGLTG-TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNL--SSLDISSNYL--TGSIPPGLGTLS-- 238 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~~l~~l~-- 238 (766)
++|++|+|++|++++ .+|..|+++++|++|+|++|++++. .+..+++| +.|+|++|.+ ++..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 888888888888886 3567888888888888888888753 33444444 7777777766 555555444332
Q ss_pred -------------------------------------------------------------------------------C
Q 004248 239 -------------------------------------------------------------------------------K 239 (766)
Q Consensus 239 -------------------------------------------------------------------------------~ 239 (766)
+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 5
Q ss_pred ccEEEccCCCCCCCCcccc-----------------------------------------------------CCCCCCCE
Q 004248 240 LQYLNVSNNSLASSIPAQL-----------------------------------------------------GDLDSLVD 266 (766)
Q Consensus 240 L~~L~Ls~N~l~~~~p~~l-----------------------------------------------------~~l~~L~~ 266 (766)
|++|++++|.++|.+|..+ ..+++|++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 5666666666666666544 56778888
Q ss_pred EEccCCcCCccCCcccCCCCCCCEEEccCccCccc--cCCCccCCCCcccEEEccCCCCCC-CCCcccCCCCCCCEEEcc
Q 004248 267 LDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN--LSVNLFPTVSQLQIIVLRQNGFTG-PPPDVLWSMPQLRLLDIS 343 (766)
Q Consensus 267 L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~--~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls 343 (766)
|++++|++++.+|..++++++|++|++++|.+++. +| ..|..+++|+.|++++|++++ .++..+..+++|+.|+++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA-LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH-HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch-hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 88888888888888888888888888888888752 22 235778888888888888888 444457788888888888
Q ss_pred CCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCccccChh
Q 004248 344 RNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGRVPEY 400 (766)
Q Consensus 344 ~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~~p~~ 400 (766)
+|++++.+|.... .+|+.|++++|.++ .+|. .+++|+.|||++|+++ .+|..
T Consensus 437 ~n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 437 SNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp SSCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred CCCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 8888877664321 57888888888887 4554 3567888888888888 46655
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=304.64 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=163.5
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||.||+|...+ .||+|.+..... ..+.+.+|++++++++||||+++++++.. ++..++||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~iv~ 108 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS-PPHLAIIT 108 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC-SSCEEEEC
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec-CCceEEEe
Confidence 4678889999999999999998754 599999865432 24568899999999999999999998876 56799999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+++|+|.+++...+ ..+++.++..++.|++.||+|||+. +|+||||||+||+++ ++.+||+|||+++.
T Consensus 109 e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~ 178 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAK------IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSI 178 (319)
T ss_dssp BCCCSEEHHHHTTSSC------CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC-
T ss_pred ecccCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCccc
Confidence 9999999999997543 2489999999999999999999998 999999999999998 67999999999865
Q ss_pred cC--------CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QG--------GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~--------~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. .......+|..|+|||.......+.......++.++|||||||++|||+||+.||...
T Consensus 179 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~ 246 (319)
T 2y4i_B 179 SGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ 246 (319)
T ss_dssp ---------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSC
T ss_pred cccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 42 1223345788999999775432111000112588999999999999999999999643
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=303.25 Aligned_cols=196 Identities=14% Similarity=0.179 Sum_probs=143.1
Q ss_pred hCCCCcc-ceeecCCcceEEEEEEc-CCcEEEEEEeeccccCHHHHHHHH-HHHhhcCCCCcccceeEEEec---CCcEE
Q 004248 533 TGDFSDA-NLIKNGHSGDLFRGILE-GGIPVVIKRIDLQSVKTEAYLLEL-DFFSKVSHARLVPLLGHCMER---ENEKF 606 (766)
Q Consensus 533 ~~~~~~~-~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~~~~~~~~~E~-~~l~~l~H~niv~l~~~~~~~---~~~~~ 606 (766)
.++|... ++||+|+||.||+|+.. +|+.||||++.... ...+|+ ..++.++||||+++++++... +...+
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 102 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL 102 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence 3567774 46999999999999954 79999999996532 222333 345667999999999987542 23489
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEecc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLGS 683 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~D 683 (766)
+|||||++|+|.+++.+... ..+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|
T Consensus 103 lv~e~~~gg~L~~~l~~~~~-----~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~D 174 (336)
T 3fhr_A 103 IIMECMEGGELFSRIQERGD-----QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTD 174 (336)
T ss_dssp EEEECCTTEEHHHHHHTC-C-----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred EEEeccCCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEec
Confidence 99999999999999986532 3599999999999999999999998 9999999999999986 45599999
Q ss_pred chhhhhcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+++.... ......+|+.|+|||...... ++.++|||||||++|||+||+.||...
T Consensus 175 fg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~g~~pf~~~ 232 (336)
T 3fhr_A 175 FGFAKETTQNALQTPCYTPYYVAPEVLGPEK---------YDKSCDMWSLGVIMYILLCGFPPFYSN 232 (336)
T ss_dssp CTTCEEC----------------------CH---------HHHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred cccceeccccccccCCCCcCccChhhhCCCC---------CCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence 999986533 234557799999999875443 578999999999999999999999543
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-34 Score=305.01 Aligned_cols=199 Identities=20% Similarity=0.188 Sum_probs=162.7
Q ss_pred HHhCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-------HHHHHHHHHHHhhc----CCCCcccceeEE
Q 004248 531 AATGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-------TEAYLLELDFFSKV----SHARLVPLLGHC 598 (766)
Q Consensus 531 ~~~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-------~~~~~~E~~~l~~l----~H~niv~l~~~~ 598 (766)
...++|...+.||+|+||.||+|+. .+++.||||++...... ...+.+|++++.++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 3457899999999999999999984 67899999999654321 23466799999999 899999999977
Q ss_pred EecCCcEEEEEee-CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CC
Q 004248 599 MERENEKFLVYKY-MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DK 676 (766)
Q Consensus 599 ~~~~~~~~lV~Ey-~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~ 676 (766)
.. ++..++|||| +++|+|.+++.++. .+++.++..++.|++.||+|||+. +|+||||||+||+++ ++
T Consensus 108 ~~-~~~~~~v~e~~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~ 176 (312)
T 2iwi_A 108 ET-QEGFMLVLERPLPAQDLFDYITEKG-------PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRR 176 (312)
T ss_dssp ------CEEEEECCSSEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTT
T ss_pred ec-CCeEEEEEEecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCC
Confidence 65 4678999999 88999999997653 389999999999999999999998 999999999999999 88
Q ss_pred CcEEeccchhhhhcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 677 FEVRLGSLSEVCAQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 677 ~~~kl~DFG~a~~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+.+||+|||+++.... ......+|..|+|||......+ .+.++|||||||++|||+||+.||..
T Consensus 177 ~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--------~~~~~Di~slG~il~~l~~g~~pf~~ 241 (312)
T 2iwi_A 177 GCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQY--------HALPATVWSLGILLYDMVCGDIPFER 241 (312)
T ss_dssp TEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCB--------CHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred CeEEEEEcchhhhcccCcccccCCcccccCceeeecCCC--------CCccchHHHHHHHHHHHHHCCCCCCC
Confidence 9999999999987643 3345568999999997754432 35689999999999999999999953
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-33 Score=313.56 Aligned_cols=204 Identities=15% Similarity=0.205 Sum_probs=153.5
Q ss_pred CCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeCCC
Q 004248 536 FSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYMPN 614 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~~~ 614 (766)
|...++||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +|||||++++++.+ ++..|+|||||+
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-~~~~~lv~E~~~- 92 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF--CDIALMEIKLLTESDDHPNVIRYYCSETT-DRFLYIALELCN- 92 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHTTSTTBCCEEEEEEC-SSEEEEEECCCS-
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH--HHHHHHHHHHHHhccCCCCcCeEEEEEec-CCeEEEEEecCC-
Confidence 44468899999999987777789999999986543 45688999999987 89999999997654 568999999996
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC-------------CcEEe
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK-------------FEVRL 681 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~-------------~~~kl 681 (766)
|+|.+++.............++..+..++.||+.||+|||+. +||||||||+|||++.+ +.+||
T Consensus 93 gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL 169 (434)
T 2rio_A 93 LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILI 169 (434)
T ss_dssp EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEE
T ss_pred CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEE
Confidence 699999976543111111124445678999999999999998 99999999999999754 48999
Q ss_pred ccchhhhhcCCC-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 682 GSLSEVCAQGGD-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+|||+++..... .....||+.|+|||.+.....+. ....++.++|||||||++|||+| |+.||..
T Consensus 170 ~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~--~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~ 242 (434)
T 2rio_A 170 SDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQ--TKRRLTRSIDIFSMGCVFYYILSKGKHPFGD 242 (434)
T ss_dssp CCCTTCEECCC--------------CCTTSCHHHHSCCCTTS--CCCCCCTHHHHHHHHHHHHHHHTTSCCTTCS
T ss_pred cccccceecCCCCccceeeecCCCCCCCccCHHHhccccccc--cccCcchhhhhHhHHHHHHHHHhCCCCCCCC
Confidence 999999876432 12346899999999875421100 00116899999999999999999 9999954
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-33 Score=296.96 Aligned_cols=196 Identities=20% Similarity=0.316 Sum_probs=156.0
Q ss_pred CCCCccceeecCCcceEEEEEEc--CCc--EEEEEEeecccc----CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--GGI--PVVIKRIDLQSV----KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--~g~--~vavK~l~~~~~----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|+.. +++ .||||+++.... ..+++.+|++++++++||||+++++++.. +..
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~ 95 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT--PPM 95 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSC
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc--CCc
Confidence 46888999999999999999843 333 699999865422 25679999999999999999999997764 358
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++||||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg 166 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQ------GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFG 166 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHG------GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCT
T ss_pred eeeEecccCCCHHHHHHhcc------CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccc
Confidence 99999999999999997643 2489999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 686 EVCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
+++...... ....+|..|+|||...... ++.++|||||||++|||+| |+.||...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~~~~~Di~slG~il~~l~~~g~~p~~~~ 228 (291)
T 1u46_A 167 LMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT---------FSHASDTWMFGVTLWEMFTYGQEPWIGL 228 (291)
T ss_dssp TCEECCC-CCEEEC-----CCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred ccccccccccchhhhccCCCCceeeCchhhcCCC---------CCchhhHHHHHHHHHHHHhCCCCCcccC
Confidence 998763321 2234567899999875433 4789999999999999999 99999543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-31 Score=311.56 Aligned_cols=276 Identities=22% Similarity=0.231 Sum_probs=174.7
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.+++.+++++.... . +.+..+.++++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..+..|+++
T Consensus 25 ~~l~~L~Ls~n~l~---~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLR---R----LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEECCSSCCC---C----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCCC---C----cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCccChhhhccC
Confidence 35777888765432 1 22346778888899999888888877777765 8888888888888887666678888
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCC--CCCCccEE
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLG--TLSKLQYL 243 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L 243 (766)
++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..+. .+++|++|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 8888888888888877777888888888888888888888888888888888888888888765554332 44666666
Q ss_pred EccCCCCCCCCcccc---------------------------------------------------CCCC--CCCEEEcc
Q 004248 244 NVSNNSLASSIPAQL---------------------------------------------------GDLD--SLVDLDLS 270 (766)
Q Consensus 244 ~Ls~N~l~~~~p~~l---------------------------------------------------~~l~--~L~~L~Ls 270 (766)
++++|++++..|..+ .+++ +|++|+|+
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 666666665544433 2222 25566666
Q ss_pred CCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC-----CCCc----ccCCCCCCCEEE
Q 004248 271 MNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG-----PPPD----VLWSMPQLRLLD 341 (766)
Q Consensus 271 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~----~l~~l~~L~~L~ 341 (766)
+|++++..|..|+.+++|++|++++|.+++..|.. |..+++|+.|++++|...+ .+|. .|..+++|++|+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 66665555555666666666666666555433321 2333333333333322221 1111 344445555555
Q ss_pred ccCCCCCCCCCcccccCCCCCcEEEccCCc
Q 004248 342 ISRNNFTGPLPNSRSNVNTSTVELNISQNM 371 (766)
Q Consensus 342 Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~ 371 (766)
+++|++++..|. .+..+++|++|++++|.
T Consensus 336 l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 336 MEDNDIPGIKSN-MFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCSCCBCCCCTT-TTTTCTTCCEEECTTCB
T ss_pred CCCCccCCCChh-HhccccCCcEEECCCCc
Confidence 555555544332 22333444444444444
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-33 Score=327.72 Aligned_cols=197 Identities=21% Similarity=0.304 Sum_probs=164.4
Q ss_pred hCCCCccceeecCCcceEEEEEEc----CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILE----GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~----~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
.++|+..+.||+|+||.||+|... .+..||||++...... .++|.+|+.++++++|||||++++++. ++..|
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~--~~~~~ 466 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT--ENPVW 466 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--SSSCE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe--cCceE
Confidence 356888899999999999999853 2568999998653322 468999999999999999999999774 45789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||||+++|+|.+++..++ ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+
T Consensus 467 lv~E~~~~g~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~ 537 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRK------FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGL 537 (656)
T ss_dssp EEEECCTTCBHHHHHHHTT------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCC
T ss_pred EEEEcCCCCcHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCC
Confidence 9999999999999997543 2489999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCCC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 687 VCAQGGDA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
++...... ....+|..|+|||.+.... ++.++|||||||++|||++ |+.||...
T Consensus 538 a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~~DiwSlG~il~ellt~g~~Pf~~~ 596 (656)
T 2j0j_A 538 SRYMEDSTYYKASKGKLPIKWMAPESINFRR---------FTSASDVWMFGVCMWEILMHGVKPFQGV 596 (656)
T ss_dssp CCSCCC----------CCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred CeecCCCcceeccCCCCCcceeCHHHhcCCC---------CCchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence 98763321 2234567899999875433 5789999999999999997 99999543
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-33 Score=303.18 Aligned_cols=190 Identities=17% Similarity=0.132 Sum_probs=157.7
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc---------CHHHHHHHHHHHhhcC---------CCCcccce
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---------KTEAYLLELDFFSKVS---------HARLVPLL 595 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~---------~~~~~~~E~~~l~~l~---------H~niv~l~ 595 (766)
++|+..+.||+|+||+||+|+. +|+.||||++..... ..+.+.+|++++++++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 4578889999999999999987 689999999975431 1378999999999986 77777766
Q ss_pred eEEE-----------------e------------cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHH
Q 004248 596 GHCM-----------------E------------RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646 (766)
Q Consensus 596 ~~~~-----------------~------------~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~i 646 (766)
+.+. + .++..|+|||||++|++.+.+.+ ..+++.+++.|+.||
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--------~~~~~~~~~~i~~qi 170 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--------KLSSLATAKSILHQL 170 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--------TCCCHHHHHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--------cCCCHHHHHHHHHHH
Confidence 6432 1 14679999999999987776643 138999999999999
Q ss_pred HHHhhhhc-cCCCCCeEecCCCCCCeeeCCCC--------------------cEEeccchhhhhcCCCCccceeeecccC
Q 004248 647 AEGLSYLH-HECTLPFVHRDVQASSILLDDKF--------------------EVRLGSLSEVCAQGGDAHQSRITRLLRL 705 (766)
Q Consensus 647 a~gL~yLH-~~~~~~iiHrDlKp~NILl~~~~--------------------~~kl~DFG~a~~~~~~~~~~~~t~~y~a 705 (766)
+.||+||| +. +||||||||+|||++.++ .+||+|||+|+..... ...||+.|+|
T Consensus 171 ~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~--~~~gt~~y~a 245 (336)
T 2vuw_A 171 TASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG--IVVFCDVSMD 245 (336)
T ss_dssp HHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT--EEECCCCTTC
T ss_pred HHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC--cEEEeecccC
Confidence 99999999 77 999999999999999887 8999999999876433 4478999999
Q ss_pred CCCCCCCceeeeeeeeecccccceecchHH-HHHHhcCCCCCC
Q 004248 706 PQSSEQGSSGMVIYLFIIFTIFHIYFHGNP-LFSAIFNNHLNL 747 (766)
Q Consensus 706 Pe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvv-l~elltG~~p~~ 747 (766)
||.+.+.. +.++||||+|++ .+++++|..||.
T Consensus 246 PE~~~g~~----------~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 246 EDLFTGDG----------DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp SGGGCCCS----------SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred hhhhcCCC----------ccceehhhhhCCCCcccccccCCCc
Confidence 99886432 468999998777 788999999984
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-33 Score=297.86 Aligned_cols=204 Identities=19% Similarity=0.185 Sum_probs=163.6
Q ss_pred HhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcC--CCCcccceeEEEecCCcEE
Q 004248 532 ATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVS--HARLVPLLGHCMERENEKF 606 (766)
Q Consensus 532 ~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~~~~ 606 (766)
..++|+..+.||+|+||.||+|...+++.||||++...... .+++.+|++++++++ ||||+++++++.. ++..+
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~-~~~~~ 104 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-DQYIY 104 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC-SSEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec-CCEEE
Confidence 34568899999999999999999888999999999754432 467899999999997 5999999998766 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+||| +.+|+|.+++.... .+++.++..++.|+++||+|||+. +|+||||||+||++++ +.+||+|||+
T Consensus 105 lv~e-~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~ 172 (313)
T 3cek_A 105 MVME-CGNIDLNSWLKKKK-------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGI 172 (313)
T ss_dssp EEEC-CCSEEHHHHHHHCS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSS
T ss_pred EEEe-cCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccc
Confidence 9999 56789999997654 389999999999999999999998 9999999999999964 8999999999
Q ss_pred hhhcCCC-----CccceeeecccCCCCCCCCceeee--eeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 687 VCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMV--IYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 687 a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~--~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
++..... .....+|..|+|||.......... .....++.++|||||||++|||+||+.||..
T Consensus 173 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 241 (313)
T 3cek_A 173 ANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 241 (313)
T ss_dssp SCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred cccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhh
Confidence 9865322 123468999999998754211000 0001268899999999999999999999954
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-33 Score=310.58 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=155.6
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.+|...++||+|+||.||.....+|+.||||++..... +.+.+|+++++++ +|||||++++++.+ ++..|+|||||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~--~~~~~E~~~l~~l~~HpnIv~l~~~~~~-~~~~~lv~E~~ 100 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF--SFADREVQLLRESDEHPNVIRYFCTEKD-RQFQYIAIELC 100 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE--EECHHHHHHHHHSCCCTTBCCEEEEEEE-TTEEEEEEECC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH--HHHHHHHHHHHhccCCCCcCeEEEEEec-CCEEEEEEECC
Confidence 35788899999999997655567789999999965432 2356899999999 79999999997765 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-----CCcEEeccchhh
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-----KFEVRLGSLSEV 687 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-----~~~~kl~DFG~a 687 (766)
+ |+|.+++..... ...+.++..++.||++||+|||+. +||||||||+|||++. ...+||+|||++
T Consensus 101 ~-g~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a 170 (432)
T 3p23_A 101 A-ATLQEYVEQKDF------AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLC 170 (432)
T ss_dssp S-EEHHHHHHSSSC------CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEE
T ss_pred C-CCHHHHHHhcCC------CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccce
Confidence 7 699999976542 244455678999999999999998 9999999999999953 346889999999
Q ss_pred hhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 688 CAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 688 ~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+.... ......||+.|+|||.+.....+. ++.++|||||||++|||+| |+.||..
T Consensus 171 ~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~------~t~~~DiwSlG~il~ellt~g~~pf~~ 232 (432)
T 3p23_A 171 KKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKEN------PTYTVDIFSAGCVFYYVISEGSHPFGK 232 (432)
T ss_dssp ECC------------CCSCTTSCCGGGTSCC---C------CCTHHHHHHHHHHHHHHHTTSCBTTBS
T ss_pred eeccCCCcceeeccccCCCcCccChhhhhcccccC------CCcHHHHHHHHHHHHHHHcCCCCCcch
Confidence 86532 223456899999999886432222 5789999999999999999 8999843
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-33 Score=328.19 Aligned_cols=190 Identities=20% Similarity=0.277 Sum_probs=161.2
Q ss_pred CCCCccceeecCCcceEEEEEEc--CCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCc----E
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--GGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENE----K 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~----~ 605 (766)
++|+..+.||+|+||.||+|... +|+.||||++..... ..+.|.+|++++++++|||||++++++...+.. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 67999999999999999999964 689999999864332 245789999999999999999999988764321 6
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+||||+++|+|.+++.. .++|.+++.|+.||+.||+|||++ +||||||||+|||++.+ .+||+|||
T Consensus 160 ~lv~E~~~g~~L~~~~~~---------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG 226 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ---------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLG 226 (681)
T ss_dssp EEEEECCCCEECC----C---------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCT
T ss_pred EEEEEeCCCCcHHHHHhC---------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecc
Confidence 999999999999987743 389999999999999999999998 99999999999999986 99999999
Q ss_pred hhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 686 EVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 686 ~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+++..... ....||+.|+|||.+..+ .+.++|||||||++|||++|..||.
T Consensus 227 ~a~~~~~~-~~~~gt~~y~aPE~~~~~----------~~~~sDi~slG~~l~~l~~g~~~~~ 277 (681)
T 2pzi_A 227 AVSRINSF-GYLYGTPGFQAPEIVRTG----------PTVATDIYTVGRTLAALTLDLPTRN 277 (681)
T ss_dssp TCEETTCC-SCCCCCTTTSCTTHHHHC----------SCHHHHHHHHHHHHHHHHSCCCEET
T ss_pred cchhcccC-CccCCCccccCHHHHcCC----------CCCceehhhhHHHHHHHHhCCCCCc
Confidence 99876543 445789999999976432 3689999999999999999998874
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=316.81 Aligned_cols=289 Identities=22% Similarity=0.225 Sum_probs=187.7
Q ss_pred CccceeecCCCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCc
Q 004248 77 VWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISG 156 (766)
Q Consensus 77 ~W~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g 156 (766)
+|..|.+-..+++.++|++..... ..+..+.++++|++|++++|...+.|++....++++|++|+|++|.+++
T Consensus 15 ~L~~vP~lp~~l~~LdLs~N~i~~-------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 15 NLTQVPQVLNTTERLLLSFNYIRT-------VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CSSCCCSSCTTCCEEEEESCCCCE-------ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCCCCCcCEEECCCCcCCc-------cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 577776644678888988754321 1123556677777777777766666643322347777777777777777
Q ss_pred cCCcccCCCCCCcEEEeecCcCCCCCCcc--ccCCCCCCEEEccCCCCCCCCC-cccCCCCCCCEEeccCCcCCCCCCCC
Q 004248 157 VIPFSLGNLTNLTSLYLSDNGLTGTIPSS--LGQLSVLSVLDLSRNSLTGNIP-TSFGLLKNLSSLDISSNYLTGSIPPG 233 (766)
Q Consensus 157 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 233 (766)
..|..|+++++|++|+|++|.+++.+|.. +.++++|++|+|++|.+++..| ..|+++++|++|+|++|.+++..|..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 66777777777777777777776655554 6677777777777777766544 45667777777777777666554444
Q ss_pred CC--------------------------CCCC------ccEEEccCCCCCCCCccccCC---------------------
Q 004248 234 LG--------------------------TLSK------LQYLNVSNNSLASSIPAQLGD--------------------- 260 (766)
Q Consensus 234 l~--------------------------~l~~------L~~L~Ls~N~l~~~~p~~l~~--------------------- 260 (766)
+. .+++ |+.|++++|.+++.+|..+..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 33 3332 666666666555544433221
Q ss_pred -----------------CCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCC
Q 004248 261 -----------------LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGF 323 (766)
Q Consensus 261 -----------------l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l 323 (766)
.++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+. .|..+++|+.|+|++|++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCC
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCC
Confidence 14567777777777766677777777777777777777654443 456777777777777777
Q ss_pred CCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004248 324 TGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYG 374 (766)
Q Consensus 324 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g 374 (766)
++..|..|..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.+
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCC
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCc
Confidence 77777777777777777777777765444 334556677777777776654
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-33 Score=296.82 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=147.7
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
.++|+..+.||+|+||.||+|.. .+|+.||||++...... .+.+.++..+++.++||||+++++++.. ++..++|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lv 102 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFIT-NTDVFIA 102 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEec-CCcEEEE
Confidence 35688899999999999999996 47899999999765432 2334455567888899999999998876 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+ ++.+..+..... ..+++..+..++.|+++||+|||+. .+|+||||||+||+++.++.+||+|||+++
T Consensus 103 ~e~~-~~~~~~l~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~ 173 (318)
T 2dyl_A 103 MELM-GTCAEKLKKRMQ------GPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGISG 173 (318)
T ss_dssp ECCC-SEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred Eecc-CCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCCEEEEECCCch
Confidence 9999 445555544322 2489999999999999999999972 179999999999999999999999999997
Q ss_pred hcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 689 AQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 689 ~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... ......+|..|+|||........... ++.++|||||||++|||+||+.||..
T Consensus 174 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~----~~~~~Di~slG~il~~l~~g~~pf~~ 231 (318)
T 2dyl_A 174 RLVDDKAKDRSAGCAAYMAPERIDPPDPTKPD----YDIRADVWSLGISLVELATGQFPYKN 231 (318)
T ss_dssp -------------CCTTCCHHHHC------------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred hccCCccccccCCCccccChhhcccccccccC----CccccchhhHHHHHHHHHhCCCCCCC
Confidence 6532 23345689999999987532211111 57899999999999999999999964
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-33 Score=319.17 Aligned_cols=199 Identities=21% Similarity=0.224 Sum_probs=167.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEe-----cCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCME-----RENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~-----~~~~~ 605 (766)
++|...+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|++++++++|||||++++++.. .++..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 6799999999999999999985 5789999999865422 25679999999999999999999997533 14568
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc---EEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE---VRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~---~kl~ 682 (766)
++|||||++|+|.+++..... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+
T Consensus 94 ~LVmEy~~ggsL~~~L~~~~~----~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQFEN----CCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp CCEEECCSSCBHHHHHHSSSC----TTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred EEEEEeCCCCCHHHHHHhccc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEc
Confidence 999999999999999976432 13488999999999999999999998 9999999999999997765 9999
Q ss_pred cchhhhhcCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 683 SLSEVCAQGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 683 DFG~a~~~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|||+++..... .....+|..|+|||...... ++.++|||||||++|||+||+.||..
T Consensus 167 DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~---------~s~ksDIwSLGviLyeLltG~~Pf~~ 225 (676)
T 3qa8_A 167 DLGYAKELDQGELCTEFVGTLQYLAPELLEQKK---------YTVTVDYWSFGTLAFECITGFRPFLP 225 (676)
T ss_dssp SCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSC---------CSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccccccccccccccccCCcccCChHHhccCC---------CCchhHHHHHHHHHHHHHHCCCCCCc
Confidence 99999876332 34457899999999986544 47899999999999999999999964
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=288.55 Aligned_cols=171 Identities=12% Similarity=0.042 Sum_probs=147.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||.||+|.. .+|+.||||.+...... .++|.+|++++++++||||+++++++.. ++..|+|
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-~~~~~lv 109 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-RAGGLVV 109 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEE-CCcEEEE
Confidence 5688999999999999999996 45899999999765432 3679999999999999999999998766 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+. ....+..+|+.|++.||+|||+. +|+||||||+|||+++++.+||+++|.
T Consensus 110 ~e~~~g~~L~~~l~~~---------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~~-- 175 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTS---------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPAT-- 175 (286)
T ss_dssp EECCCEEEHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCCC--
T ss_pred EEecCCCCHHHHHhcC---------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEeccc--
Confidence 9999999999999532 34557888999999999999998 999999999999999999999986542
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
++| ++.++|||||||++|||+||+.||....
T Consensus 176 ---------------~~~----------------~~~~~Di~slG~il~elltg~~Pf~~~~ 206 (286)
T 3uqc_A 176 ---------------MPD----------------ANPQDDIRGIGASLYALLVNRWPLPEAG 206 (286)
T ss_dssp ---------------CTT----------------CCHHHHHHHHHHHHHHHHHSEECSCCCS
T ss_pred ---------------cCC----------------CCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence 221 4689999999999999999999996543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=306.26 Aligned_cols=303 Identities=21% Similarity=0.200 Sum_probs=228.3
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
+...+++++.... .+.+..+.++++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..|..+++++
T Consensus 57 ~L~~L~Ls~n~l~-------~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 57 ELQWLDLSRCEIE-------TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred cCcEEeCCCCccc-------ccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccCCCC
Confidence 4666777654322 122345677778888888888777766766654 77778888887777776667777777
Q ss_pred CCcEEEeecCcCCC-CCCccccCCCCCCEEEccCCCCCCCCCccc-----------------------------------
Q 004248 167 NLTSLYLSDNGLTG-TIPSSLGQLSVLSVLDLSRNSLTGNIPTSF----------------------------------- 210 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~----------------------------------- 210 (766)
+|++|+|++|.+++ .+|..++++++|++|+|++|++++..|..|
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 77777777777765 467777777777777777776665433211
Q ss_pred --------------------------------------------------------------------------------
Q 004248 211 -------------------------------------------------------------------------------- 210 (766)
Q Consensus 211 -------------------------------------------------------------------------------- 210 (766)
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence
Q ss_pred ----------------------------------------------------------CCCCCCCEEeccCCcCCCC--C
Q 004248 211 ----------------------------------------------------------GLLKNLSSLDISSNYLTGS--I 230 (766)
Q Consensus 211 ----------------------------------------------------------~~l~~L~~L~Ls~N~l~~~--~ 230 (766)
..+++|++|++++|.+++. +
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEEC
T ss_pred EEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcch
Confidence 1233444445555554433 2
Q ss_pred CCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCC-cccCCCCCCCEEEccCccCccccCCCccCC
Q 004248 231 PPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP-SELRGLRSLQKFVIGNNFLSGNLSVNLFPT 309 (766)
Q Consensus 231 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~ 309 (766)
|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+.++++|++|++++|.+++..|.. +..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~ 446 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLG 446 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-TTT
T ss_pred hhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-hcC
Confidence 5556677889999999999875 66888999999999999999998877 68899999999999999998766654 588
Q ss_pred CCcccEEEccCCCCCC-CCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCE
Q 004248 310 VSQLQIIVLRQNGFTG-PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRL 385 (766)
Q Consensus 310 l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ 385 (766)
+++|+.|++++|++++ .+|..+..+++|+.|+|++|++++..|.. +..+++|+.|++++|.+.+..|. .+++|+.
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 8999999999999988 47888999999999999999999877754 45678899999999999887664 3567899
Q ss_pred EeccCCcCccccChhh
Q 004248 386 VDLSGNYFEGRVPEYV 401 (766)
Q Consensus 386 ldLs~N~l~g~~p~~~ 401 (766)
|||++|+++ .+|..+
T Consensus 526 L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGIL 540 (606)
T ss_dssp EECTTSCCC-CEESCG
T ss_pred EECCCCcCc-ccCHhH
Confidence 999999998 566654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=300.89 Aligned_cols=306 Identities=25% Similarity=0.264 Sum_probs=210.0
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
.++.+||++.... .+.+..+.++++|++|++++|.+.+-.|..| .+|++|++|+|++|+|++..+..|.+++
T Consensus 53 ~~~~LdLs~N~i~-------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPLR-------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEEEeeCCCCC-------CCCHHHHhCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4667777765432 1223467888999999999998865334444 4489999999999999887778889999
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCC-CCCcccCCCCCCCEEeccCCcCCCCCCCCCCCC--------
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL-------- 237 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-------- 237 (766)
+|++|+|++|++++..+..|+++++|++|+|++|++++ .+|..++.+++|++|+|++|++++..|..+..+
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 99999999999987777778999999999999999875 467888889999999999887764333221100
Q ss_pred --------------------------------------------------------------------------------
Q 004248 238 -------------------------------------------------------------------------------- 237 (766)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (766)
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence
Q ss_pred -------------------------------------------CCccEEEccCCCCCCCCc-------------------
Q 004248 238 -------------------------------------------SKLQYLNVSNNSLASSIP------------------- 255 (766)
Q Consensus 238 -------------------------------------------~~L~~L~Ls~N~l~~~~p------------------- 255 (766)
.+|+.|++++|.+.+..+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 112233333332221111
Q ss_pred cccCCCCCCCEEEccCCcCCc-------------------------------------------------c-CCcccCCC
Q 004248 256 AQLGDLDSLVDLDLSMNSLSG-------------------------------------------------S-VPSELRGL 285 (766)
Q Consensus 256 ~~l~~l~~L~~L~Ls~N~l~g-------------------------------------------------~-~p~~l~~l 285 (766)
.....+++|+.|++++|.+.. . .+..+..+
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc
Confidence 011234556666666655421 1 11234556
Q ss_pred CCCCEEEccCccCccccCCCccCCCCcccEEEccCCCC-CCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcE
Q 004248 286 RSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGF-TGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVE 364 (766)
Q Consensus 286 ~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~ 364 (766)
++++.++++.|.+.+..+ ..+..++.|+.|+|++|++ .+.+|..|..+++|++|||++|++++..|.. +..+++|++
T Consensus 445 ~~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~-f~~l~~L~~ 522 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQV 522 (635)
T ss_dssp TTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCE
T ss_pred cccccccccccccccccc-cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH-HcCCCCCCE
Confidence 677777777777775444 3457778888888888864 4456777888888888888888888766643 455678888
Q ss_pred EEccCCcCccCCCc---CCCCCCEEeccCCcCccccChhhh
Q 004248 365 LNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 365 L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
|+|++|++++..|. .+++|+.|||++|++++..|..+.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 88888888776553 456788888888888887777653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=311.67 Aligned_cols=277 Identities=21% Similarity=0.229 Sum_probs=220.3
Q ss_pred CCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccC-CcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVI-PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
.++|+.|++++|.+.+..|..+.. +++|++|||++|.+.+.+ |..|+++++|++|+|++|.+++..|..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 468999999999998877877765 999999999999776666 788999999999999999999989999999999999
Q ss_pred EEccCCCCCCCCCcc--cCCCCCCCEEeccCCcCCCCCC-CCCCCCCCccEEEccCCCCCCCCccccCCC--CC------
Q 004248 195 LDLSRNSLTGNIPTS--FGLLKNLSSLDISSNYLTGSIP-PGLGTLSKLQYLNVSNNSLASSIPAQLGDL--DS------ 263 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~------ 263 (766)
|+|++|.+++.+|.. |.++++|++|+|++|.+++..| ..|+++++|++|+|++|.+++..|..+..+ ++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999999877765 9999999999999999997655 579999999999999999988777665544 44
Q ss_pred ------------------------CCEEEccCCcCCccCCcccCC-----------------------------------
Q 004248 264 ------------------------LVDLDLSMNSLSGSVPSELRG----------------------------------- 284 (766)
Q Consensus 264 ------------------------L~~L~Ls~N~l~g~~p~~l~~----------------------------------- 284 (766)
|++|++++|.+++.+|..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 555555555554444332211
Q ss_pred ---CCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 004248 285 ---LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTS 361 (766)
Q Consensus 285 ---l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 361 (766)
.++|+.|++++|.+.+.. ...|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|. .+..+++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 339 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPK 339 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTT
T ss_pred ccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCCCC
Confidence 145667777777766443 34457788888888888888888888888888888888888888866664 3456678
Q ss_pred CcEEEccCCcCccCCCc---CCCCCCEEeccCCcCcc
Q 004248 362 TVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 362 l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g 395 (766)
|+.|++++|.+.+..+. .+++|+.|+|++|.+++
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 88888888888654442 35678888888887765
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=300.49 Aligned_cols=156 Identities=29% Similarity=0.246 Sum_probs=113.0
Q ss_pred CCCCCCCEEEccCCcCCccC--CcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCC-cccCCCC
Q 004248 259 GDLDSLVDLDLSMNSLSGSV--PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP-DVLWSMP 335 (766)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~g~~--p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~ 335 (766)
..+++|++|++++|++++.. |..+.++++|++|++++|.+++..+ . +..+++|+.|++++|.+++.+| ..+.+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-c-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 45678888888888888654 6777888888888888888875433 3 5778888888888888887765 5677888
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCc-cCCCc---CCCCCCEEeccCCcCccccChhhhh--cc--cC
Q 004248 336 QLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFY-GGLTP---VLGRFRLVDLSGNYFEGRVPEYVHS--NA--SS 407 (766)
Q Consensus 336 ~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~-g~~~~---~l~~l~~ldLs~N~l~g~~p~~~~~--~~--~~ 407 (766)
+|++|++++|++++.+|.. +..+++|+.|++++|.+. +.+|. .+++|+.|||++|++++..|..+.. ++ -.
T Consensus 422 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEeCcCCcccccchhh-hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 8888888888888776643 355678888888888876 45554 3567888888888888777766532 11 14
Q ss_pred CCcccCCCCC
Q 004248 408 LDSNCLQNVP 417 (766)
Q Consensus 408 l~~n~l~~~~ 417 (766)
+++|.+.+.+
T Consensus 501 l~~n~l~~~~ 510 (570)
T 2z63_A 501 MASNQLKSVP 510 (570)
T ss_dssp CCSSCCSCCC
T ss_pred CCCCcCCCCC
Confidence 4556665543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=274.99 Aligned_cols=267 Identities=21% Similarity=0.252 Sum_probs=219.1
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++|+.|++++|.+.+..+..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 57899999999998755556654 999999999999999988999999999999999999998 5777665 7999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCC--CCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG--SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
+++|++++..+..|.++++|+.|++++|.++. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++|++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 99999998888889999999999999999963 677889999999999999999985 666554 8999999999999
Q ss_pred CccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcc
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 354 (766)
++..|..+.++++|+.|++++|.+++..+ ..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 99889999999999999999999986544 44578899999999999998 66778999999999999999999654433
Q ss_pred ccc-----CCCCCcEEEccCCcCcc-CCC----cCCCCCCEEeccCCc
Q 004248 355 RSN-----VNTSTVELNISQNMFYG-GLT----PVLGRFRLVDLSGNY 392 (766)
Q Consensus 355 ~~~-----~~~~l~~L~ls~N~l~g-~~~----~~l~~l~~ldLs~N~ 392 (766)
+.. ....+..+++++|.+.. .++ ..+..++.++|++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 221 13566677777777642 222 235567777777764
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=282.02 Aligned_cols=175 Identities=14% Similarity=0.195 Sum_probs=148.8
Q ss_pred CCCCcc-ceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHH-hhcCCCCcccceeEEEe---cCCcEEE
Q 004248 534 GDFSDA-NLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFF-SKVSHARLVPLLGHCME---RENEKFL 607 (766)
Q Consensus 534 ~~~~~~-~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l-~~l~H~niv~l~~~~~~---~~~~~~l 607 (766)
++|... ++||+|+||.||+|.. .+++.||||+++. .+.+.+|++++ +..+||||+++++++.. .++..++
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 92 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 92 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEE
Confidence 456666 7899999999999995 6789999999863 34678899988 55699999999997754 1346899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEeccc
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLGSL 684 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~DF 684 (766)
||||+++|+|.+++..... ..+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+||
T Consensus 93 v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Df 164 (299)
T 3m2w_A 93 VMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDF 164 (299)
T ss_dssp EECCCCSCBHHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred EEeecCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecc
Confidence 9999999999999986542 3589999999999999999999998 9999999999999998 789999999
Q ss_pred hhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+++.... .. ++.++||||+||++|||+||+.||..
T Consensus 165 g~a~~~~~-------------------~~---------~~~~~DiwslG~il~el~tg~~pf~~ 200 (299)
T 3m2w_A 165 GFAKETTG-------------------EK---------YDKSCDMWSLGVIMYILLCGYPPFYS 200 (299)
T ss_dssp TTCEECTT-------------------CG---------GGGHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cccccccc-------------------cc---------CCchhhHHHHHHHHHHHHHCCCCCCC
Confidence 99864321 11 57899999999999999999999954
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=302.77 Aligned_cols=180 Identities=25% Similarity=0.225 Sum_probs=148.8
Q ss_pred eecCCCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcc
Q 004248 82 RCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFS 161 (766)
Q Consensus 82 ~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~ 161 (766)
.|....| .++++.+.. .++.. + .++|+.|++++|.+.+..|..+.. +++|++|+|++|.+++..|..
T Consensus 3 ~C~~~~~--c~~~~~~l~---~ip~~-----~--~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 3 SCDASGV--CDGRSRSFT---SIPSG-----L--TAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp EECTTSE--EECTTSCCS---SCCSC-----C--CTTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCce--EECCCCccc---ccccc-----C--CCCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhh
Confidence 5765555 577654432 23322 1 268999999999998877777755 999999999999999999999
Q ss_pred cCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCC-CCCcccCCCCCCCEEeccCCcCCCCCC-CCCCCCCC
Q 004248 162 LGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIP-PGLGTLSK 239 (766)
Q Consensus 162 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~ 239 (766)
|+++++|++|+|++|++++..|..|+++++|++|+|++|++++ .+|..|+++++|++|++++|.+.+.+| ..+.++++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 9999999999999999998878889999999999999999987 467899999999999999999655665 68999999
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 240 LQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 240 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
|++|++++|++++.+|..++++++|++|+++.|.+
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999999999998888887665555555444443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=300.08 Aligned_cols=280 Identities=20% Similarity=0.234 Sum_probs=143.7
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCc-----cCCc----ccCCCCCCcEEEeecCcCCCCCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISG-----VIPF----SLGNLTNLTSLYLSDNGLTGTIP 183 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g-----~~p~----~l~~l~~L~~L~Ls~N~l~~~~p 183 (766)
+.++++|+.|++++|.+.+..|..+.. +++|++|+|++|...+ .+|. .|..+++|++|+|++|.+++..|
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred ccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 344444444444444444433333322 4444444444333222 1111 34444444455555555544444
Q ss_pred ccccCCCCCCEEEccCCCCCCCC--CcccCC--CCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCc-ccc
Q 004248 184 SSLGQLSVLSVLDLSRNSLTGNI--PTSFGL--LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP-AQL 258 (766)
Q Consensus 184 ~~l~~L~~L~~L~Ls~N~l~~~~--p~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l 258 (766)
..|.++++|++|++++|.+++.. +..|.. .++|+.|++++|++++..|..+..+++|++|+|++|.+++.+| ..+
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 426 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc
Confidence 44444444444444444322110 011111 1234444444555555556666666777777777777665544 456
Q ss_pred CCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc--cccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCC
Q 004248 259 GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS--GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQ 336 (766)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~--g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 336 (766)
.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|. .|..+++|+.|+|++|++++.+|..|..+++
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence 66666777777776666666666666666666666666654 23333 2355666666666666666666666666666
Q ss_pred CCEEEccCCCCCCCC----C---cccccCCCCCcEEEccCCcCccCCCc----CCCCCCEEeccCCcCcc
Q 004248 337 LRLLDISRNNFTGPL----P---NSRSNVNTSTVELNISQNMFYGGLTP----VLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 337 L~~L~Ls~N~l~g~~----p---~~~~~~~~~l~~L~ls~N~l~g~~~~----~l~~l~~ldLs~N~l~g 395 (766)
|++|++++|++++.. | ...+..+++|+.|++++|.+. .+|+ .+.+|+.|||++|++++
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCc
Confidence 666666666665321 1 111334455666666666665 3332 34556666666666664
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=277.34 Aligned_cols=266 Identities=22% Similarity=0.250 Sum_probs=201.8
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++|+.|++++|.+.+-.|..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 57888899988887655556654 888999999999988888888888999999999999888 5666655 7889999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCC--CCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLT--GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
+++|++++..+..|.++++|+.|++++|.++ +..|..+..+ +|++|++++|++++ +|..+. ++|++|++++|++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 9999988766667888899999999998885 3667778777 88899999998875 565554 6888889999998
Q ss_pred CccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcc
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 354 (766)
++..|..+.++++|+.|++++|.+++..+ ..|..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 88877888888889999999888876443 34577888888999988888 56667888888999999988888554433
Q ss_pred cccC-----CCCCcEEEccCCcCc--cCCC---cCCCCCCEEeccCCc
Q 004248 355 RSNV-----NTSTVELNISQNMFY--GGLT---PVLGRFRLVDLSGNY 392 (766)
Q Consensus 355 ~~~~-----~~~l~~L~ls~N~l~--g~~~---~~l~~l~~ldLs~N~ 392 (766)
+... ...+..|++++|.+. +..| ..+.+|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2221 345667777777665 2222 234566667776663
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-32 Score=302.17 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=155.2
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeecccc----CHHHHHHHHHHHhhcCC-CCcccceeE----------
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSH-ARLVPLLGH---------- 597 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~----~~~~~~~E~~~l~~l~H-~niv~l~~~---------- 597 (766)
..|...++||+|+||.||+|+ ..+|+.||||++..... ..+.|.+|+.+++.++| +|......+
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 346677899999999999999 56799999999873322 25679999999999987 332211111
Q ss_pred -----------EEec----CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeE
Q 004248 598 -----------CMER----ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFV 662 (766)
Q Consensus 598 -----------~~~~----~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ii 662 (766)
+... ....+++|+++ +|+|.+++............++|..+..++.|+++||+|||+. +||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 1110 12357777766 5799998852110001123588999999999999999999998 999
Q ss_pred ecCCCCCCeeeCCCCcEEeccchhhhhcCCCCccceeeecccCCCCCCCCc--eeeeeeeeecccccceecchHHHHHHh
Q 004248 663 HRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGS--SGMVIYLFIIFTIFHIYFHGNPLFSAI 740 (766)
Q Consensus 663 HrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~--~g~~~~~~~~~~~~Dv~s~Gvvl~ell 740 (766)
||||||+|||++.++.+||+|||+++..+......+| +.|+|||.+.... +|. .....++.++|||||||++|||+
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~-~~~~~~~~~~DvwSlGvil~ell 311 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQ-HHPTLMTFAFDTWTLGLAIYWIW 311 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGG-GCCEEECHHHHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCccccCCC-CceeCchhhhcccccccc-ccCcCCCchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999877655555667 8999999873211 000 00012689999999999999999
Q ss_pred cCCCCCCCC
Q 004248 741 FNNHLNLSS 749 (766)
Q Consensus 741 tG~~p~~~~ 749 (766)
||+.||...
T Consensus 312 tg~~Pf~~~ 320 (413)
T 3dzo_A 312 CADLPNTDD 320 (413)
T ss_dssp HSSCCCCTT
T ss_pred HCCCCCCCc
Confidence 999999644
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=283.62 Aligned_cols=258 Identities=24% Similarity=0.242 Sum_probs=130.5
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCC--CCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTG--TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+|++|+|++|.++...+..|.++++|++|+|++|.++. ..|..+..+++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 34444555554443333334445555555555554441 12334444455555555555544 2444444555555555
Q ss_pred ccCCcCCCCCC-CCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc-cCCcccCCCCCCCEEEccCccC
Q 004248 221 ISSNYLTGSIP-PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG-SVPSELRGLRSLQKFVIGNNFL 298 (766)
Q Consensus 221 Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~~p~~l~~l~~L~~L~ls~N~l 298 (766)
+++|.+++..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555543322 344555555555555555554444455555555555555555544 3445555555555555555555
Q ss_pred ccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC-
Q 004248 299 SGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT- 377 (766)
Q Consensus 299 ~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~- 377 (766)
++..|. .|..+++|+.|+|++|++++..+..+..+++|+.|||++|++++..|........+++.|++++|.+.+...
T Consensus 188 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 188 EQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 443222 234555555555555555555555555556666666666666555554333322355666666666655322
Q ss_pred ----cCCCCCCEEeccCCcCccccChhhh
Q 004248 378 ----PVLGRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 378 ----~~l~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
.++...+.+....|.+....|..+.
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhC
Confidence 2233444455666777777777653
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=274.74 Aligned_cols=273 Identities=19% Similarity=0.180 Sum_probs=210.3
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.+++.+++++.... .+ + .+..+++|++|++++|.+.+ +| ++ .+++|++|+|++|.+++. | ++++
T Consensus 42 ~~L~~L~Ls~n~l~---~~-~-----~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT---DM-T-----GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp TTCCEEECCSSCCC---CC-T-----TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred CCCCEEEccCCCcc---cC-h-----hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCC
Confidence 35778888875432 11 1 47788999999999998877 45 44 489999999999999875 3 8899
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEc
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNV 245 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 245 (766)
++|++|+|++|++++ +| ++++++|++|++++|++++. | ++.+++|+.|++++|...+.+ .++.+++|++|++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 999999999999986 44 88899999999999999873 3 788899999999999766666 4778889999999
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG 325 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~ 325 (766)
++|++++ +| ++.+++|+.|++++|++++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC
Confidence 9999887 45 77888899999999988875 37888889999999998887 55 4678888899999998888
Q ss_pred CCCcccCCCC-------CCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc-----------CCCCCCEEe
Q 004248 326 PPPDVLWSMP-------QLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP-----------VLGRFRLVD 387 (766)
Q Consensus 326 ~~p~~l~~l~-------~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~-----------~l~~l~~ld 387 (766)
.++..+.++. +|+.|++++|++.|.+|. ..+++|+.|++++|.+.|.+|. ..++|+.|+
T Consensus 248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred cCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc---cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 7766555544 556666666666666652 3456677777777776665552 124567777
Q ss_pred ccCCcCcc
Q 004248 388 LSGNYFEG 395 (766)
Q Consensus 388 Ls~N~l~g 395 (766)
|++|+|+|
T Consensus 325 L~~N~l~~ 332 (457)
T 3bz5_A 325 LNNTELTE 332 (457)
T ss_dssp CTTCCCSC
T ss_pred CCCCcccc
Confidence 77777776
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=265.39 Aligned_cols=264 Identities=21% Similarity=0.260 Sum_probs=224.9
Q ss_pred CCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEcc
Q 004248 119 LASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198 (766)
Q Consensus 119 L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 198 (766)
++.++++++.+. .+|..+ .++|++|+|++|.+++..+..|+++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 33 l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 445555555553 456544 3689999999999999888899999999999999999998889999999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCC--CCccccCCCCCCCEEEccCCcCCc
Q 004248 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS--SIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
+|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99998 5676664 799999999999998777779999999999999999964 678889999999999999999985
Q ss_pred cCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS 356 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 356 (766)
+|..+. ++|++|++++|.+++..+ ..|..+++|+.|+|++|++++.++..+..+++|+.|+|++|+++ .+|...
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l- 259 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL- 259 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-
T ss_pred -CCcccc--ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh-
Confidence 565554 899999999999987544 45688999999999999999999989999999999999999999 777643
Q ss_pred cCCCCCcEEEccCCcCccCCCcC---------CCCCCEEeccCCcCcc
Q 004248 357 NVNTSTVELNISQNMFYGGLTPV---------LGRFRLVDLSGNYFEG 395 (766)
Q Consensus 357 ~~~~~l~~L~ls~N~l~g~~~~~---------l~~l~~ldLs~N~l~g 395 (766)
..+++|++|++++|.+++..+.. ...++.+++++|.+..
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 56789999999999998643322 3568899999999863
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=267.44 Aligned_cols=263 Identities=21% Similarity=0.250 Sum_probs=227.4
Q ss_pred CCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEc
Q 004248 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDL 197 (766)
Q Consensus 118 ~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 197 (766)
+++.++++++.+. .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566777777664 677655 468999999999999988889999999999999999999888999999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCC--CCCccccCCCCCCCEEEccCCcCC
Q 004248 198 SRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA--SSIPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 198 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
++|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..|..+..+ +|++|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999998 5776665 89999999999999766667999999999999999996 4778888888 9999999999998
Q ss_pred ccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccc
Q 004248 276 GSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSR 355 (766)
Q Consensus 276 g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 355 (766)
+ +|..+. ++|++|++++|.+++..+ ..|..+++|+.|+|++|++++.+|..+..+++|+.|+|++|+++ .+|..
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~- 259 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG- 259 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT-
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh-
Confidence 6 666554 789999999999986544 45688999999999999999999999999999999999999999 78865
Q ss_pred ccCCCCCcEEEccCCcCccCCCcC---------CCCCCEEeccCCcCc
Q 004248 356 SNVNTSTVELNISQNMFYGGLTPV---------LGRFRLVDLSGNYFE 394 (766)
Q Consensus 356 ~~~~~~l~~L~ls~N~l~g~~~~~---------l~~l~~ldLs~N~l~ 394 (766)
...+++|+.|++++|.+++..+.. ...++.|++++|.+.
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 456789999999999998643322 356889999999987
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=270.85 Aligned_cols=265 Identities=23% Similarity=0.232 Sum_probs=209.5
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCc--cCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISG--VIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
++|+.|++++|.+. .+|+.....+++|++|+|++|.++. ..|..+..+++|++|+|++|.++ .+|..+.++++|++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 57889999998886 6777654558999999999998873 34667778899999999999887 47777888999999
Q ss_pred EEccCCCCCCCCC-cccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCC-CCccccCCCCCCCEEEccCC
Q 004248 195 LDLSRNSLTGNIP-TSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS-SIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 195 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N 272 (766)
|++++|++++..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999886554 578889999999999999988888888889999999999999876 57888889999999999999
Q ss_pred cCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCC-CCCEEEccCCCCCCCC
Q 004248 273 SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMP-QLRLLDISRNNFTGPL 351 (766)
Q Consensus 273 ~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~ 351 (766)
++++..|..+..+++|++|++++|.+++. +...|..+++|+.|+|++|++++.+|..+..++ +|++|+|++|++++.-
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99888888899999999999999998754 444467888999999999999998888888885 8999999999988754
Q ss_pred Cccc-ccCCCCCcEEEccCCcCccCCCcCCCCCC
Q 004248 352 PNSR-SNVNTSTVELNISQNMFYGGLTPVLGRFR 384 (766)
Q Consensus 352 p~~~-~~~~~~l~~L~ls~N~l~g~~~~~l~~l~ 384 (766)
+... .........+....+.+.+..|..+....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 265 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp GGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred ChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 3111 01111222334455667776676555443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=290.47 Aligned_cols=318 Identities=19% Similarity=0.221 Sum_probs=238.3
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
+++.+++++..... +.+..+.++++|++|++++|.+.+-.|..+. .+++|++|+|++|.+++..|..|++++
T Consensus 29 ~l~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 29 STKNLDLSFNPLRH-------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCCEEECCSCCCCE-------ECTTTTTTCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred cccEEEccCCccCc-------cChhHhhCCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 57778887754321 2234678999999999999998775555565 499999999999999998889999999
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCC-CCCcccCCCCCCCEEeccCCcCCCCCCCCCCCC--------
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTL-------- 237 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-------- 237 (766)
+|++|+|++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..|..++.+
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 99999999999997666679999999999999999987 479999999999999999998875544433333
Q ss_pred --------------------------------------------------------------------------------
Q 004248 238 -------------------------------------------------------------------------------- 237 (766)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (766)
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence
Q ss_pred ---------------------CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcc-c-------------
Q 004248 238 ---------------------SKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE-L------------- 282 (766)
Q Consensus 238 ---------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~-l------------- 282 (766)
++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|.. +
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBS
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcc
Confidence 33444444444443 234334433 4444444444443 22211 1
Q ss_pred ------CCCCCCCEEEccCccCccccC-CCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccc
Q 004248 283 ------RGLRSLQKFVIGNNFLSGNLS-VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSR 355 (766)
Q Consensus 283 ------~~l~~L~~L~ls~N~l~g~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 355 (766)
..+++|++|++++|.+++... ...+..+++|+.|++++|.+++.++. +..+++|+.|++++|++++..|...
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 467889999999999875431 12346789999999999999987666 8999999999999999998877556
Q ss_pred ccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCc-cccChhhhh--cc--cCCCcccCCCC
Q 004248 356 SNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFE-GRVPEYVHS--NA--SSLDSNCLQNV 416 (766)
Q Consensus 356 ~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~-g~~p~~~~~--~~--~~l~~n~l~~~ 416 (766)
+..+++|++|++++|.+.+..|. .+++|+.|+|++|.++ +.+|..+.. ++ -++++|.+.+.
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 67788999999999999887774 4678999999999998 678866531 11 14556655543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-30 Score=278.57 Aligned_cols=259 Identities=22% Similarity=0.175 Sum_probs=178.5
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++|+.|++++|.+.+-.+..+. .+++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ-RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhc-cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4677888888877653333444 478888888888888877777788888888888888888754444577788888888
Q ss_pred ccCCCCCCCCC-cccCCCCCCCEEeccCCc-CCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 197 LSRNSLTGNIP-TSFGLLKNLSSLDISSNY-LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 197 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
|++|++++..+ ..|.++++|++|++++|. +++..|..+.++++|++|++++|.+++..|..+.++++|++|++++|++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 88888774333 367778888888888774 5555566777788888888888888777777788888888888888877
Q ss_pred CccCCcccCCCCCCCEEEccCccCccccCCCc--cCCCCcccEEEccCCCCCC----CCCcccCCCCCCCEEEccCCCCC
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL--FPTVSQLQIIVLRQNGFTG----PPPDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~--~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
....+..+..+++|+.|++++|.+++..+..+ ......++.++|++|.+++ .+|..+..+++|+.||+++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 54333344557778888888887775433221 1234556667777777665 25666677777777777777776
Q ss_pred CCCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccccC
Q 004248 349 GPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVP 398 (766)
Q Consensus 349 g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~p 398 (766)
.+|...+. .+++|+.|+|++|++++..|
T Consensus 291 -~i~~~~~~---------------------~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFD---------------------RLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTT---------------------TCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHh---------------------cCCCCCEEEeeCCCccCcCC
Confidence 45543222 24567777777887777766
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=288.57 Aligned_cols=274 Identities=20% Similarity=0.189 Sum_probs=236.4
Q ss_pred hhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCC
Q 004248 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQL 189 (766)
Q Consensus 110 ~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L 189 (766)
+..+.++++|++|++++|.+.+..|..++. +++|++|+|++|.+++..+..|+++++|++|+|++|.+++..|..|.++
T Consensus 92 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred hHHhcCCCCCCEEECCCCcCCCCCHHHHcC-CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 457889999999999999998866666654 9999999999999998777778999999999999999999889999999
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q 004248 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDL 269 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 269 (766)
++|++|+|++|.+++. | ++.+++|+.|++++|.+++ +...++|+.|++++|.++.. |..+ .++|+.|+|
T Consensus 171 ~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L 239 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKL 239 (597)
T ss_dssp TTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEEC
T ss_pred CcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEEC
Confidence 9999999999999875 2 5678999999999999875 33456899999999999754 3332 368999999
Q ss_pred cCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCC
Q 004248 270 SMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 270 s~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 349 (766)
++|.+++ +..+..+++|+.|++++|.+++.+|.. |..+++|+.|+|++|++++. |..+..+++|+.|+|++|+++
T Consensus 240 ~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~- 314 (597)
T 3oja_B 240 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL- 314 (597)
T ss_dssp CSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-
T ss_pred CCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-
Confidence 9999997 478999999999999999999876654 58899999999999999984 666788999999999999999
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccccChhh
Q 004248 350 PLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 350 ~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
.+|... ..+++|+.|++++|.+.+..+..+++|+.|+|++|++++..+..+
T Consensus 315 ~i~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 315 HVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp CCGGGH-HHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred ccCccc-ccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhHHHH
Confidence 566543 567899999999999988766788999999999999998654433
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=269.26 Aligned_cols=225 Identities=23% Similarity=0.314 Sum_probs=198.9
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
.++++.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..|+++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 688999999999998 78888999999999999999999 89999999999999999999999 7899999999999999
Q ss_pred ccCCcCCCCCCCCCCC---------CCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEE
Q 004248 221 ISSNYLTGSIPPGLGT---------LSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~---------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L 291 (766)
|++|++.+.+|..++. +++|++|+|++|+++ .+|..++++++|++|+|++|++++ +|..++.+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9999999999998765 899999999999998 788889999999999999999985 66678999999999
Q ss_pred EccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCc
Q 004248 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM 371 (766)
Q Consensus 292 ~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~ 371 (766)
++++|.+.+.+|.. |..+++|+.|+|++|++.+.+|..+.++++|++|+|++|++.+.+|... ..++++..++++.|.
T Consensus 235 ~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEEeCCHHH
Confidence 99999998888765 4788899999999999999999889999999999999999999998654 444555555555443
Q ss_pred C
Q 004248 372 F 372 (766)
Q Consensus 372 l 372 (766)
+
T Consensus 313 ~ 313 (328)
T 4fcg_A 313 Q 313 (328)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=275.93 Aligned_cols=261 Identities=21% Similarity=0.188 Sum_probs=224.6
Q ss_pred hhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCC
Q 004248 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~ 191 (766)
.+.++++|+.|++++|.+.+ +| .+.. +++|++|+|++|.+++. | ++++++|++|+|++|++++. | ++++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~~-l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIEK-LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGGG-CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhcc-cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 56789999999999999986 56 5655 99999999999999985 4 89999999999999999974 4 899999
Q ss_pred CCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccC
Q 004248 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSM 271 (766)
Q Consensus 192 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 271 (766)
|++|++++|++++ +| ++.+++|++|++++|++++ +| ++.+++|++|++++|+..+.+ .++.+++|++|++++
T Consensus 108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999999997 45 8999999999999999997 43 889999999999999777776 488999999999999
Q ss_pred CcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCC
Q 004248 272 NSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPL 351 (766)
Q Consensus 272 N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 351 (766)
|++++ +| ++.+++|+.|++++|.+++. + +..+++|+.|++++|++++. | +..+++|+.|++++|++++..
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC
Confidence 99997 45 88999999999999999874 2 57889999999999999994 5 889999999999999999864
Q ss_pred CcccccCCC-------CCcEEEccCCcCccCCCc-CCCCCCEEeccCCcCccccChh
Q 004248 352 PNSRSNVNT-------STVELNISQNMFYGGLTP-VLGRFRLVDLSGNYFEGRVPEY 400 (766)
Q Consensus 352 p~~~~~~~~-------~l~~L~ls~N~l~g~~~~-~l~~l~~ldLs~N~l~g~~p~~ 400 (766)
+.. ...+. .++.|++++|.+.|.+|. .+++|+.|||++|.+.|.+|..
T Consensus 250 ~~~-l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 250 VST-LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp CTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECT
T ss_pred HHH-CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccC
Confidence 422 22211 456677777777777774 4688999999999999988853
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=264.93 Aligned_cols=211 Identities=27% Similarity=0.319 Sum_probs=180.7
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCC-CCCCCCcccCCCCCCCEE
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS-LTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L 219 (766)
.++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|. ++...|..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4578899999999988888888999999999999999988778889999999999999997 776668888999999999
Q ss_pred eccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc
Q 004248 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 220 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
+|++|.+++..|..+.++++|++|++++|++++..+..++++++|++|+|++|++++..+..+.++++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999998877888889999999999999998777777888999999999999998777777888889999999998888
Q ss_pred cccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC
Q 004248 300 GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 300 g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
+..|. .|..+++|+.|++++|++++.++..+..+++|+.|++++|+++...+
T Consensus 191 ~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 191 HVHPH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECTT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccCHh-HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 66554 35778888889999998888888888888999999999988876544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=260.33 Aligned_cols=282 Identities=22% Similarity=0.326 Sum_probs=234.7
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
..++.+++++..... + ..+..+++|++|++++|.+.+ +|+ +. .+++|++|+|++|.+++. | .+.++
T Consensus 44 ~~L~~L~l~~~~i~~---~------~~~~~~~~L~~L~l~~n~i~~-~~~-~~-~l~~L~~L~L~~n~i~~~-~-~~~~l 109 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS---I------QGIEYLTNLEYLNLNGNQITD-ISP-LS-NLVKLTNLYIGTNKITDI-S-ALQNL 109 (347)
T ss_dssp TTCSEEECCSSCCCC---C------TTGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCC-G-GGTTC
T ss_pred ccccEEEEeCCcccc---c------hhhhhcCCccEEEccCCcccc-chh-hh-cCCcCCEEEccCCcccCc-h-HHcCC
Confidence 356778887644321 1 247789999999999998864 555 54 499999999999999863 3 69999
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEc
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNV 245 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 245 (766)
++|++|+|++|.+++ +|. +.++++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 110 ~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 110 TNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 999999999999985 444 8899999999999997665544 48999999999999999985433 889999999999
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG 325 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~ 325 (766)
++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC
T ss_pred cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC
Confidence 9999986443 8889999999999999987655 8899999999999999986443 6788999999999999987
Q ss_pred CCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---CCCCCCEEeccCCcCccccC
Q 004248 326 PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---VLGRFRLVDLSGNYFEGRVP 398 (766)
Q Consensus 326 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~l~~l~~ldLs~N~l~g~~p 398 (766)
. +.+..+++|++|++++|++++. | .....++|+.|++++|.+.+..|. .+++|+.|+|++|++++..|
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI-S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred C--hhHhcCCCcCEEEccCCccCCC-h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 5 5688999999999999999864 4 245678999999999999876653 57899999999999998777
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=276.63 Aligned_cols=248 Identities=20% Similarity=0.194 Sum_probs=189.6
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCC-CccCCcccC-------CCCCCcEEEeecCcCCCCCCc
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSI-SGVIPFSLG-------NLTNLTSLYLSDNGLTGTIPS 184 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l-~g~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~ 184 (766)
....++|+.|++++|.+ .+|..+.. . |+.|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~-~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD-I--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH-H--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH-H--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 45667788899999998 88988766 2 88999999999 466777666 789999999999999988998
Q ss_pred cc--cCCCCCCEEEccCCCCCCCCCcccCCC-----CCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCC--Cc
Q 004248 185 SL--GQLSVLSVLDLSRNSLTGNIPTSFGLL-----KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS--IP 255 (766)
Q Consensus 185 ~l--~~L~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p 255 (766)
.+ ..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..++++++|++|+|++|++.+. +|
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8999999999999999977 8877776 8999999999999888778899999999999999988765 33
Q ss_pred ccc--CCCCCCCEEEccCCcCCc--cCC-cccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcc
Q 004248 256 AQL--GDLDSLVDLDLSMNSLSG--SVP-SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV 330 (766)
Q Consensus 256 ~~l--~~l~~L~~L~Ls~N~l~g--~~p-~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 330 (766)
..+ +++++|++|+|++|++++ .++ ..+.++++|++|++++|.+++.+|...+..+++|+.|+|++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 444 788899999999998873 222 334577888888888888877665555566777777777777777 45555
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcC
Q 004248 331 LWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF 372 (766)
Q Consensus 331 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l 372 (766)
+. ++|++|||++|++++. |. ...+++|++|++++|.+
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTT
T ss_pred cc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCC
Confidence 54 6777777777777754 43 23333444444444433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=272.79 Aligned_cols=261 Identities=28% Similarity=0.347 Sum_probs=119.3
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 192 (766)
+..+++|++|++++|.+.+ +|+ +. .+++|++|+|++|.+++..| ++++++|++|+|++|.+++. |. +.++++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred hhhhcCCCEEECCCCccCC-chh-hh-ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence 3445555555555555443 222 32 25555555555555554333 55555555555555555432 22 4555555
Q ss_pred CEEEccCCCCCCCCCc--------------------ccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCC
Q 004248 193 SVLDLSRNSLTGNIPT--------------------SFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS 252 (766)
Q Consensus 193 ~~L~Ls~N~l~~~~p~--------------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 252 (766)
++|++++|.+++ +|. .+.++++|+.|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 137 ~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 137 NRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp SEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 555555555443 221 144444455555555544422 124444455555555555444
Q ss_pred CCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccC
Q 004248 253 SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLW 332 (766)
Q Consensus 253 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 332 (766)
..| ++.+++|++|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++.++ +.
T Consensus 214 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 214 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--cc
Confidence 333 33444455555555444432 234444455555555554443322 3444445555555555444333 44
Q ss_pred CCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC-cCCCCCCEEeccCCcCcc
Q 004248 333 SMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT-PVLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 333 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~-~~l~~l~~ldLs~N~l~g 395 (766)
.+++|+.|++++|++++..| ...+++|+.|++++|.+.+..| ..+++|+.|++++|++++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCC
Confidence 44455555555555443322 2233444455555554444332 233444445555554444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=272.79 Aligned_cols=281 Identities=28% Similarity=0.376 Sum_probs=230.6
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
+++.+++++..... + . .+.++++|++|++++|.+.+..| +. .+++|++|+|++|.+++..+ +.+++
T Consensus 69 ~L~~L~Ls~n~l~~---~----~--~~~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~l~ 134 (466)
T 1o6v_A 69 NLTQINFSNNQLTD---I----T--PLKNLTKLVDILMNNNQIADITP--LA-NLTNLTGLTLFNNQITDIDP--LKNLT 134 (466)
T ss_dssp TCCEEECCSSCCCC---C----G--GGTTCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCCCCCGG--GTTCT
T ss_pred CCCEEECCCCccCC---c----h--hhhccccCCEEECCCCccccChh--hc-CCCCCCEEECCCCCCCCChH--HcCCC
Confidence 56777777654321 1 1 26788888888888888865443 54 48888888888888886543 78888
Q ss_pred CCcEEEeecCcCCCCCC--------------------ccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcC
Q 004248 167 NLTSLYLSDNGLTGTIP--------------------SSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p--------------------~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 226 (766)
+|++|+|++|.+++. | ..+.++++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 135 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 135 NLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp TCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 888888888887642 2 2367788999999999999864 3588999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCc
Q 004248 227 TGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306 (766)
Q Consensus 227 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~ 306 (766)
++..| ++.+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++..+
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--- 282 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--- 282 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---
T ss_pred ccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc---
Confidence 97655 77899999999999999864 468899999999999999997665 8899999999999999987544
Q ss_pred cCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC-cCCCCCCE
Q 004248 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT-PVLGRFRL 385 (766)
Q Consensus 307 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~-~~l~~l~~ 385 (766)
+..+++|+.|++++|++++.+| +..+++|+.|++++|++++..| ...+++|+.|++++|.+.+... ..+++|+.
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 357 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINW 357 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCE
Confidence 5789999999999999998766 7899999999999999998766 3567899999999999987521 35789999
Q ss_pred EeccCCcCccccC
Q 004248 386 VDLSGNYFEGRVP 398 (766)
Q Consensus 386 ldLs~N~l~g~~p 398 (766)
|++++|++++..|
T Consensus 358 L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 358 LSAGHNQISDLTP 370 (466)
T ss_dssp EECCSSCCCBCGG
T ss_pred EeCCCCccCccch
Confidence 9999999999887
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=266.31 Aligned_cols=276 Identities=20% Similarity=0.185 Sum_probs=229.8
Q ss_pred hhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCC
Q 004248 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQL 189 (766)
Q Consensus 110 ~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L 189 (766)
...+.++++|+.|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|.++
T Consensus 62 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 140 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140 (390)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhHhcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence 345788999999999999987655556654 9999999999999999989999999999999999999995544557999
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCC-------------------ccEEEccCCCC
Q 004248 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSK-------------------LQYLNVSNNSL 250 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-------------------L~~L~Ls~N~l 250 (766)
++|++|++++|++++..|..|..+++|+.|++++|.+++.- +..+++ |++|++++|.+
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCee
Confidence 99999999999999888889999999999999999998642 333444 45555555555
Q ss_pred CCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcc
Q 004248 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV 330 (766)
Q Consensus 251 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 330 (766)
+.. |.. ..++|+.|++++|++++. ..+..+++|++|++++|.+++..|. .|..+++|+.|+|++|++++. |..
T Consensus 218 ~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~ 290 (390)
T 3o6n_A 218 NVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVAL-NLY 290 (390)
T ss_dssp CEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEE-ECS
T ss_pred eec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCccc-Ccc
Confidence 432 322 347899999999999874 5789999999999999999976554 458899999999999999874 556
Q ss_pred cCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccccC
Q 004248 331 LWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVP 398 (766)
Q Consensus 331 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~p 398 (766)
+..+++|++|+|++|+++ .+|.. ...+++|+.|++++|.+...-...+++|+.|++++|++++.-.
T Consensus 291 ~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHH
T ss_pred cCCCCCCCEEECCCCcce-ecCcc-ccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhH
Confidence 688999999999999998 45543 3456899999999999987666678999999999999987543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=299.74 Aligned_cols=181 Identities=15% Similarity=0.040 Sum_probs=129.2
Q ss_pred eeecCCcceEEEEE-EcCCcEEEEEEeecccc-----------CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV-----------KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 541 ~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~-----------~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
..+.|+.|.+++++ .-.|+.+|||.+..... ..++|.+|+++|+++ .|+||+++++++.+ +++.||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed-~~~~yL 319 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN-AQSGWL 319 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC-SSEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE-CCEEEE
Confidence 45677777777765 45689999999965321 135799999999999 79999999997755 678999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
||||++||+|.++|.+.+. ++.. +|+.||+.||+|+|++ +||||||||+|||+++++++||+|||+|
T Consensus 320 VMEyv~G~~L~d~i~~~~~-------l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlA 386 (569)
T 4azs_A 320 VMEKLPGRLLSDMLAAGEE-------IDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSI 386 (569)
T ss_dssp EEECCCSEEHHHHHHTTCC-------CCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTE
T ss_pred EEecCCCCcHHHHHHhCCC-------CCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccC
Confidence 9999999999999976543 5553 5899999999999998 9999999999999999999999999999
Q ss_pred hhcCC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCC
Q 004248 688 CAQGG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745 (766)
Q Consensus 688 ~~~~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p 745 (766)
+.... ...+.+||+.|+|||.+.+. +..++|+||+|++++++.+|..|
T Consensus 387 r~~~~~~~~~~t~vGTp~YmAPE~l~g~----------~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 387 VTTPQDCSWPTNLVQSFFVFVNELFAEN----------KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp ESCC---CCSHHHHHHHHHHHHHHC---------------------------CCCCTTHHH
T ss_pred eeCCCCCccccCceechhhccHHHhCCC----------CCCcccccccccchhhhccccch
Confidence 87633 34556899999999987542 34678999999999888776544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=278.23 Aligned_cols=245 Identities=22% Similarity=0.192 Sum_probs=214.4
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcC-CCCCCcccc-------CCCCCCEEEccCCCCCCCCCccc--
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGL-TGTIPSSLG-------QLSVLSVLDLSRNSLTGNIPTSF-- 210 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l~-------~L~~L~~L~Ls~N~l~~~~p~~~-- 210 (766)
.++|++|++++|.+ .+|..+... |+.|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 67899999999999 778777654 99999999999 456787776 89999999999999999999987
Q ss_pred CCCCCCCEEeccCCcCCCCCCCCCCCC-----CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCcc--CCccc-
Q 004248 211 GLLKNLSSLDISSNYLTGSIPPGLGTL-----SKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS--VPSEL- 282 (766)
Q Consensus 211 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~--~p~~l- 282 (766)
..+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..++++++|++|+|++|++.+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8999999999999999987 8877777 9999999999999998889999999999999999999876 34455
Q ss_pred -CCCCCCCEEEccCccCcc--ccCCCccCCCCcccEEEccCCCCCCCCC-cccCCCCCCCEEEccCCCCCCCCCcccccC
Q 004248 283 -RGLRSLQKFVIGNNFLSG--NLSVNLFPTVSQLQIIVLRQNGFTGPPP-DVLWSMPQLRLLDISRNNFTGPLPNSRSNV 358 (766)
Q Consensus 283 -~~l~~L~~L~ls~N~l~g--~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~ 358 (766)
.++++|++|++++|.+++ .++..++..+++|+.|+|++|++++.+| ..+..+++|++|+|++|+++ .+|....
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 899999999999999983 4455556678999999999999999885 56777899999999999999 7886543
Q ss_pred CCCCcEEEccCCcCccCCC--cCCCCCCEEeccCCcCcc
Q 004248 359 NTSTVELNISQNMFYGGLT--PVLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 359 ~~~l~~L~ls~N~l~g~~~--~~l~~l~~ldLs~N~l~g 395 (766)
.+|+.|++++|.+++. | ..+++|+.|+|++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 7899999999999875 4 356788999999999986
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-28 Score=260.14 Aligned_cols=280 Identities=24% Similarity=0.322 Sum_probs=235.0
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.++..+++++..... + ..+.++++|++|++++|.+.+ +| .+. .+++|++|+|++|.+++..+ +..+
T Consensus 66 ~~L~~L~l~~n~i~~---~------~~~~~l~~L~~L~L~~n~i~~-~~-~~~-~l~~L~~L~l~~n~i~~~~~--~~~l 131 (347)
T 4fmz_A 66 TNLEYLNLNGNQITD---I------SPLSNLVKLTNLYIGTNKITD-IS-ALQ-NLTNLRELYLNEDNISDISP--LANL 131 (347)
T ss_dssp TTCCEEECCSSCCCC---C------GGGTTCTTCCEEECCSSCCCC-CG-GGT-TCTTCSEEECTTSCCCCCGG--GTTC
T ss_pred CCccEEEccCCcccc---c------hhhhcCCcCCEEEccCCcccC-ch-HHc-CCCcCCEEECcCCcccCchh--hccC
Confidence 357788888754321 1 127899999999999998865 55 454 49999999999999987544 8999
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEc
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNV 245 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 245 (766)
++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. +. +..+++|+.|++
T Consensus 132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTA 206 (347)
T ss_dssp TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEEC
T ss_pred CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeec
Confidence 999999999997765554 49999999999999999986544 88999999999999999854 43 889999999999
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG 325 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~ 325 (766)
++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++++
T Consensus 207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N--AVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC
T ss_pred ccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h--hHhcCCCcCEEEccCCccCC
Confidence 9999987654 8899999999999999986544 89999999999999999863 2 46889999999999999998
Q ss_pred CCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC-cCCCCCCEEeccCCcCc
Q 004248 326 PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT-PVLGRFRLVDLSGNYFE 394 (766)
Q Consensus 326 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~-~~l~~l~~ldLs~N~l~ 394 (766)
. +.+..+++|+.|++++|++++..|.. +..+++|+.|++++|.+++..| ..+++|+.||+++|.|+
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 6 46889999999999999999776643 4567899999999999988766 46889999999999985
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=270.94 Aligned_cols=247 Identities=21% Similarity=0.275 Sum_probs=188.7
Q ss_pred CCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccC
Q 004248 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211 (766)
Q Consensus 132 ~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~ 211 (766)
.+|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.
T Consensus 45 ~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 45 SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 456544 35899999999999988777999999999999999999988888999999999999999999975555699
Q ss_pred CCCCCCEEeccCCcCCCCCCC--CCCCCCCccEEEccCC-CCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCC
Q 004248 212 LLKNLSSLDISSNYLTGSIPP--GLGTLSKLQYLNVSNN-SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSL 288 (766)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L 288 (766)
++++|++|+|++|++++ +|. .+.++++|++|++++| .+....|..++++++|++|++++|++++..|..+.++++|
T Consensus 122 ~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 99999999999999985 554 7889999999999999 4666667788999999999999999998888888888888
Q ss_pred CEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccC---CCCCCCEEEccCCCCCCCCCcccccCCCCCcEE
Q 004248 289 QKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLW---SMPQLRLLDISRNNFTGPLPNSRSNVNTSTVEL 365 (766)
Q Consensus 289 ~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L 365 (766)
++|++++|.+. .++...+..+++|+.|++++|++++..+..+. ..+.++.+++++|.+++.
T Consensus 201 ~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~--------------- 264 (353)
T 2z80_A 201 SHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE--------------- 264 (353)
T ss_dssp EEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH---------------
T ss_pred CeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc---------------
Confidence 88888888875 34444445567777777777777765544332 233444444444444321
Q ss_pred EccCCcCccCCC---cCCCCCCEEeccCCcCccccChhhhhcc
Q 004248 366 NISQNMFYGGLT---PVLGRFRLVDLSGNYFEGRVPEYVHSNA 405 (766)
Q Consensus 366 ~ls~N~l~g~~~---~~l~~l~~ldLs~N~l~g~~p~~~~~~~ 405 (766)
.+. .+| ..+++|+.|||++|+++ .+|..+..++
T Consensus 265 -----~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 265 -----SLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp -----HHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred -----chh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 000 122 24678888999999988 6776653333
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=270.11 Aligned_cols=226 Identities=25% Similarity=0.268 Sum_probs=110.7
Q ss_pred CCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEc
Q 004248 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDL 197 (766)
Q Consensus 118 ~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 197 (766)
+|+.|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4455555555554444444432 555555555555555555555555555555555555555444444555555555555
Q ss_pred cCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCC-CCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 198 SRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPP-GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 198 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
++|+++...+..|.++++|+.|+|++|+..+.+|. .|.++++|++|+|++|++++. | .+..+++|++|+|++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 55555544444455555555555555322222222 344555555555555555432 2 24445555555555555555
Q ss_pred cCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCC
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 347 (766)
..|..|.++++|+.|++++|.+++..+ ..|..+++|+.|+|++|++++.++..+..+++|+.|+|++|.+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 445555555555555555555543222 2234444455555555555444444444444444444444444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=274.09 Aligned_cols=285 Identities=25% Similarity=0.265 Sum_probs=199.8
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCC-------------CCEEEccCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPT-------------LQALDLRSCS 153 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~-------------L~~L~Ls~N~ 153 (766)
++..+++++... |.++ .+++++++|++|++++|.+.|.+|+.++. +.+ |++|++++|.
T Consensus 12 ~L~~L~l~~n~l---~~iP-----~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 12 FLQEPLRHSSNL---TEMP-----VEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cchhhhcccCch---hhCC-----hhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhccCCCEEEecCCc
Confidence 455566655432 3333 35778888888888888888888877654 554 4888888888
Q ss_pred CCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCC
Q 004248 154 ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPG 233 (766)
Q Consensus 154 l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 233 (766)
+++. |.. .++|++|+|++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .
T Consensus 83 l~~l-p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~ 148 (454)
T 1jl5_A 83 LSSL-PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-E 148 (454)
T ss_dssp CSCC-CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-C
T ss_pred cccC-CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-c
Confidence 8763 331 3678888888888886 6653 3678888888888875 3322 2689999999999986 77 5
Q ss_pred CCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcc
Q 004248 234 LGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQL 313 (766)
Q Consensus 234 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L 313 (766)
++++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++++++|++|++++|.+++ +|.. .++|
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L 217 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSL 217 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTC
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcc
Confidence 8899999999999999886 66543 588999999999987 56 68899999999999999886 4432 2588
Q ss_pred cEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcC
Q 004248 314 QIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYF 393 (766)
Q Consensus 314 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l 393 (766)
+.|++++|+++ .+|. +..+++|++|++++|++++ +|.. ..+++.|++++|.+.+ +|..+.+|+.|++++|++
T Consensus 218 ~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 218 ESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIF 289 (454)
T ss_dssp CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred cEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccc-cCcccCcCCEEECcCCcc
Confidence 99999999988 4553 8889999999999999985 5532 3678899999998886 676778899999999999
Q ss_pred cc--ccChhhhhcccCCCcccCCC
Q 004248 394 EG--RVPEYVHSNASSLDSNCLQN 415 (766)
Q Consensus 394 ~g--~~p~~~~~~~~~l~~n~l~~ 415 (766)
++ .+|..+. . -.++.|.+.+
T Consensus 290 ~~l~~~~~~L~-~-L~l~~N~l~~ 311 (454)
T 1jl5_A 290 SGLSELPPNLY-Y-LNASSNEIRS 311 (454)
T ss_dssp SEESCCCTTCC-E-EECCSSCCSE
T ss_pred CcccCcCCcCC-E-EECcCCcCCc
Confidence 87 4443221 1 1345555543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=267.02 Aligned_cols=226 Identities=27% Similarity=0.287 Sum_probs=113.5
Q ss_pred CCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEc
Q 004248 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDL 197 (766)
Q Consensus 118 ~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 197 (766)
+++.|++++|.+.+..|..+.. +++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSS-CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhC-CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 4455555555554433333332 555555555555555555555555555555555555555444444555555555555
Q ss_pred cCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCC-CCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 198 SRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP-PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 198 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
++|+++...+..|.++++|+.|+|++|+..+.++ ..|.++++|++|+|++|+++. +| .+..+++|++|+|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 5555554444455555555555555533222222 234555555555555555542 33 24455555555555555555
Q ss_pred cCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCC
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 347 (766)
..|..|.++++|+.|++++|.+++.. ...|..+++|+.|+|++|++++.++..|..+++|+.|+|++|.+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 55555555555555555555554322 22334445555555555555544444444555555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=268.26 Aligned_cols=228 Identities=19% Similarity=0.205 Sum_probs=194.0
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 58999999999999999999999999999999999999888899999999999999999999877778999999999999
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
++|.++...+..|.++++|++|++++|+..+.+| ..|.++++|++|+|++|++++. | .+..+++|+.|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 9999997767789999999999999955444454 4688999999999999999864 4 58889999999999999987
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCc
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFY 373 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~ 373 (766)
..| ..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+ ..+..+.+|+.|++++|.+.
T Consensus 233 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEE
T ss_pred cCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcC
Confidence 555 456889999999999999999999999999999999999999985444 33333444555555554443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=276.90 Aligned_cols=286 Identities=21% Similarity=0.252 Sum_probs=228.3
Q ss_pred hhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCC-CCCccccC
Q 004248 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTG-TIPSSLGQ 188 (766)
Q Consensus 110 ~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~ 188 (766)
+.++.+|++|++|++++|.+.+ +|+..+.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..+++
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 171 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred hhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc
Confidence 4578899999999999999875 554433459999999999999999888889999999999999999976 46888999
Q ss_pred CCCCCEEEccCCCCCCCCCcccCC--------------------------------------------------------
Q 004248 189 LSVLSVLDLSRNSLTGNIPTSFGL-------------------------------------------------------- 212 (766)
Q Consensus 189 L~~L~~L~Ls~N~l~~~~p~~~~~-------------------------------------------------------- 212 (766)
+++|++|+|++|++++..|..|..
T Consensus 172 l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l 251 (635)
T 4g8a_A 172 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 251 (635)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred chhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccc
Confidence 999999999999887654432211
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 004248 213 ---------------------------------------------------------------------------LKNLS 217 (766)
Q Consensus 213 ---------------------------------------------------------------------------l~~L~ 217 (766)
..+|+
T Consensus 252 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 331 (635)
T 4g8a_A 252 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 331 (635)
T ss_dssp EEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCS
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhh
Confidence 11233
Q ss_pred EEeccCCcCCCCCC-------------------CCCCCCCCccEEEccCCCCCC--------------------------
Q 004248 218 SLDISSNYLTGSIP-------------------PGLGTLSKLQYLNVSNNSLAS-------------------------- 252 (766)
Q Consensus 218 ~L~Ls~N~l~~~~p-------------------~~l~~l~~L~~L~Ls~N~l~~-------------------------- 252 (766)
.|++++|.+.+..+ .....+++|+.|++++|.+..
T Consensus 332 ~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 411 (635)
T 4g8a_A 332 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT 411 (635)
T ss_dssp EEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE
T ss_pred hhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc
Confidence 44444444332111 112345667777777665531
Q ss_pred -----------------------CC-ccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccC
Q 004248 253 -----------------------SI-PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308 (766)
Q Consensus 253 -----------------------~~-p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~ 308 (766)
.. +..+.++++|+.++++.|.+.+..|..+..+++|+.|++++|.+...+++..|.
T Consensus 412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 11 234567788999999999999999999999999999999999876666666789
Q ss_pred CCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC----CCCC
Q 004248 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL----GRFR 384 (766)
Q Consensus 309 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l----~~l~ 384 (766)
.+++|+.|+|++|++++.+|..|.++++|++|+|++|+|++..|. .+..+++|+.|++++|++++..|..+ .+|+
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999999999999999999999999999999999999999976664 45667899999999999999888653 5799
Q ss_pred EEeccCCcCcccc
Q 004248 385 LVDLSGNYFEGRV 397 (766)
Q Consensus 385 ~ldLs~N~l~g~~ 397 (766)
.|+|++|+|+..-
T Consensus 571 ~L~L~~Np~~C~C 583 (635)
T 4g8a_A 571 FLNLTQNDFACTC 583 (635)
T ss_dssp EEECTTCCBCCSG
T ss_pred EEEeeCCCCcccC
Confidence 9999999998753
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=265.71 Aligned_cols=234 Identities=21% Similarity=0.232 Sum_probs=197.2
Q ss_pred CCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccC
Q 004248 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211 (766)
Q Consensus 132 ~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~ 211 (766)
.+|..+ .++++.|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.
T Consensus 57 ~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 355544 35799999999999999999999999999999999999988889999999999999999999987777899
Q ss_pred CCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCccCCcccCCCCCCCE
Q 004248 212 LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQK 290 (766)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~ 290 (766)
.+++|++|+|++|.++...+..|.++++|++|+|++|+..+.+| ..|.++++|++|+|++|+++ .+| .+..+++|+.
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence 99999999999999997777789999999999999965444444 47889999999999999998 455 5888999999
Q ss_pred EEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCC
Q 004248 291 FVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370 (766)
Q Consensus 291 L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N 370 (766)
|++++|.+++..+ ..|..+++|+.|+|++|++++..+..|.++++|+.|||++|++++..+ ..+..+.+|+.|+|++|
T Consensus 212 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 212 LDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEEECCSS
T ss_pred EECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHhccccCCCEEEcCCC
Confidence 9999999986544 456889999999999999999999999999999999999999985444 33333444444444444
Q ss_pred cC
Q 004248 371 MF 372 (766)
Q Consensus 371 ~l 372 (766)
.+
T Consensus 290 p~ 291 (440)
T 3zyj_A 290 PW 291 (440)
T ss_dssp CE
T ss_pred Cc
Confidence 44
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-28 Score=253.16 Aligned_cols=253 Identities=19% Similarity=0.220 Sum_probs=216.5
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
++++.+++.++. +|..+ .++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888888874 45443 579999999999999877788999999999999999999888999999999999999999
Q ss_pred c-CCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccC
Q 004248 225 Y-LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303 (766)
Q Consensus 225 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~ 303 (766)
. ++...|..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..+.++++|++|++++|.+++ ++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cC
Confidence 7 776668899999999999999999999889999999999999999999998877889999999999999999984 55
Q ss_pred CCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc--CCC
Q 004248 304 VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP--VLG 381 (766)
Q Consensus 304 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~--~l~ 381 (766)
...|..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+ ..+...++|+.|++++|.+.+..+. ...
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 5567889999999999999999999999999999999999999997544 3445667888888888888765442 112
Q ss_pred CCCEEeccCCcCccccChhhh
Q 004248 382 RFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 382 ~l~~ldLs~N~l~g~~p~~~~ 402 (766)
.++.++.+.|.+.+..|+.+.
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGT
T ss_pred HHHhcccccCccccCCchHhC
Confidence 234445677777777777653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=261.71 Aligned_cols=249 Identities=23% Similarity=0.289 Sum_probs=137.3
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
++|+.|++++|.+.+ +|.. .++|++|+|++|.+++ +| .++++++|++|++++|++++ +|..+ .+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEE
T ss_pred CCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEE
Confidence 455555555555543 3211 1355555555555554 44 35555555555555555553 44322 2555555
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
+++|++++ +| .++++++|+.|++++|.+++ +|... ++|++|++++|.++ .+|. ++.+++|++|++++|++++
T Consensus 180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 55555554 34 35555555555555555553 33221 34555555555554 3442 4455555555555555543
Q ss_pred cCCccc-----------------CCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCC-CCCC
Q 004248 277 SVPSEL-----------------RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSM-PQLR 338 (766)
Q Consensus 277 ~~p~~l-----------------~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~ 338 (766)
+|..+ ...++|+.|++++|.+++ ++. ..++|+.|++++|++++. ..+ ++|+
T Consensus 252 -l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~ 320 (454)
T 1jl5_A 252 -LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-----CDLPPSLE 320 (454)
T ss_dssp -CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-----CCCCTTCC
T ss_pred -ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-----cCCcCcCC
Confidence 22211 012344455555554443 110 013455555555555431 123 5888
Q ss_pred EEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCcc--ccChhh
Q 004248 339 LLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEG--RVPEYV 401 (766)
Q Consensus 339 ~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g--~~p~~~ 401 (766)
.|++++|++++ +|.. ..+++.|++++|.++ .+|..+.+|+.||+++|+++| .+|..+
T Consensus 321 ~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp EEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred EEECCCCcccc-cccc----CCcCCEEECCCCccc-cccchhhhccEEECCCCCCCcCCCChHHH
Confidence 99999999886 6643 478889999999888 466677889999999999998 777765
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=263.42 Aligned_cols=281 Identities=27% Similarity=0.337 Sum_probs=226.8
Q ss_pred CCCCCCCCCCCcccee--------ecCCCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhh
Q 004248 67 DWPRKVDPCLVWNGVR--------CQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLG 138 (766)
Q Consensus 67 ~W~~~~~~C~~W~gv~--------C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~ 138 (766)
+|.... +||.|.|.. |....++.+++++.... .++.. +. ++|+.|++++|.+. .||.
T Consensus 14 ~W~~~~-~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~---~lp~~-----l~--~~L~~L~L~~N~l~-~lp~--- 78 (622)
T 3g06_A 14 AWRRAA-PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT---TLPDC-----LP--AHITTLVIPDNNLT-SLPA--- 78 (622)
T ss_dssp HHHHTC-CGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS---CCCSC-----CC--TTCSEEEECSCCCS-CCCC---
T ss_pred HHHhcC-CcchhccccccCcccccccCCCCcEEEecCCCcC---ccChh-----hC--CCCcEEEecCCCCC-CCCC---
Confidence 575444 456897643 33445788999886543 33322 22 78999999999987 6886
Q ss_pred hCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCE
Q 004248 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218 (766)
Q Consensus 139 ~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 218 (766)
.+++|++|+|++|.+++ +|. .+++|++|+|++|++++ +|. .+++|+.|++++|++++ +|.. +++|++
T Consensus 79 -~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~ 145 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQE 145 (622)
T ss_dssp -CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred -cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCE
Confidence 38899999999999985 555 78999999999999996 555 67899999999999985 6654 489999
Q ss_pred EeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccC
Q 004248 219 LDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFL 298 (766)
Q Consensus 219 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l 298 (766)
|+|++|.+++ +|.. +++|+.|++++|++++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.+
T Consensus 146 L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l 213 (622)
T 3g06_A 146 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL 213 (622)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCcCCC-cCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcc
Confidence 9999999985 5653 5789999999999986 56 457899999999999986 5543 47899999999999
Q ss_pred ccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc
Q 004248 299 SGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP 378 (766)
Q Consensus 299 ~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~ 378 (766)
+. +|. .+++|+.|+|++|++++.+ ..+++|+.|+|++|+|+ .+|. ...+|+.|++++|.++ .+|.
T Consensus 214 ~~-l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 214 TS-LPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp SS-CCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCG
T ss_pred cc-cCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCH
Confidence 84 443 3478999999999999844 46689999999999999 5664 4578999999999998 6775
Q ss_pred ---CCCCCCEEeccCCcCccccChhhh
Q 004248 379 ---VLGRFRLVDLSGNYFEGRVPEYVH 402 (766)
Q Consensus 379 ---~l~~l~~ldLs~N~l~g~~p~~~~ 402 (766)
.+++|+.|+|++|+++|.+|..+.
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred HHhhccccCEEEecCCCCCCcCHHHHH
Confidence 467899999999999999988764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=238.50 Aligned_cols=209 Identities=23% Similarity=0.259 Sum_probs=182.4
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+.++++|++|+|++|++++..|..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46899999999999888888999999999999999999777778999999999999999999888889999999999999
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCC-CccccCCCCCCCEEEccCCcCCccCCcccCCCCCCC----EEEccCc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS-IPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ----KFVIGNN 296 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~----~L~ls~N 296 (766)
++|.+++..+..++.+++|++|++++|.+++. +|..++++++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999987777899999999999999999874 688999999999999999999988777777777666 8999999
Q ss_pred cCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC
Q 004248 297 FLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 297 ~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
.+++. +...+.. .+|+.|+|++|++++.++..+..+++|+.|++++|++++..|
T Consensus 188 ~l~~~-~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFI-QPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEE-CTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccc-CccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99854 4444443 479999999999998888888889999999999998887655
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=233.94 Aligned_cols=185 Identities=28% Similarity=0.347 Sum_probs=151.0
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46888888888888777778888888888888888888655556678888888888888888766677788888888888
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN 301 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~ 301 (766)
++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..+..|.++++|++|++++|.+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR- 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-
Confidence 8888887777778888888888888888887666668888888888888888887777778888888888888888874
Q ss_pred cCCCccCCCCcccEEEccCCCCCCCC
Q 004248 302 LSVNLFPTVSQLQIIVLRQNGFTGPP 327 (766)
Q Consensus 302 ~~~~~~~~l~~L~~L~L~~N~l~~~~ 327 (766)
++...|..+++|+.|+|++|.+....
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCHHHhccccCCCEEEecCCCeeCCC
Confidence 56566678888888888888886543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-28 Score=260.08 Aligned_cols=236 Identities=19% Similarity=0.196 Sum_probs=154.3
Q ss_pred EEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCC
Q 004248 121 SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200 (766)
Q Consensus 121 ~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 200 (766)
..+++.+.+.. ++..+...+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..| +..+++|++|+|++|
T Consensus 14 i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHHH-HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred Eeeccccchhh-hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 33444444422 223333446677777777777777766777777777777777777775443 777777777777777
Q ss_pred CCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCc
Q 004248 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPS 280 (766)
Q Consensus 201 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 280 (766)
++++. | ..++|+.|++++|.+++..+.. +++|++|++++|++++..|..++.+++|++|+|++|++++..|.
T Consensus 91 ~l~~l-~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQEL-L----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEE-E----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred ccccc-c----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 77642 2 2367777777777777544332 56677788888877776666777777788888888877776666
Q ss_pred cc-CCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCC
Q 004248 281 EL-RGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVN 359 (766)
Q Consensus 281 ~l-~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 359 (766)
.+ ..+++|++|++++|.+++. +.. ..+++|+.|+|++|++++.++. +..+++|+.|+|++|+++ .+|... ...
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~-~~l 236 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKAL-RFS 236 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTC-CCC
T ss_pred HHhhccCcCCEEECCCCcCccc-ccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHh-hcC
Confidence 55 3677778888887777654 322 2367778888888887765544 777788888888888777 345322 223
Q ss_pred CCCcEEEccCCcCc
Q 004248 360 TSTVELNISQNMFY 373 (766)
Q Consensus 360 ~~l~~L~ls~N~l~ 373 (766)
++|+.|++++|.+.
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 33444444444333
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=263.79 Aligned_cols=223 Identities=21% Similarity=0.260 Sum_probs=172.3
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|++|+|++|.+++..|..|+++++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|+.|+|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 378888888888888878888888888888888888886555 8888888888888888875332 378888888
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccC-CCCCCCEEEccCccCcc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELR-GLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~-~l~~L~~L~ls~N~l~g 300 (766)
++|.+++..+. .+++|+.|+|++|.+++..|..++++++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888865544 357888888888888888888888888888999999988888887775 78888888888888886
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL 380 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l 380 (766)
..+ . ..+++|+.|+|++|++++.+|. +..+++|+.|+|++|++++ +|... . .+
T Consensus 184 ~~~-~--~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l-~---------------------~l 236 (487)
T 3oja_A 184 VKG-Q--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKAL-R---------------------FS 236 (487)
T ss_dssp EEC-C--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTC-C---------------------CC
T ss_pred ccc-c--ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhh-c---------------------cC
Confidence 532 2 3477888888888888876655 7788888888888888885 45321 1 23
Q ss_pred CCCCEEeccCCcCc-cccChhh
Q 004248 381 GRFRLVDLSGNYFE-GRVPEYV 401 (766)
Q Consensus 381 ~~l~~ldLs~N~l~-g~~p~~~ 401 (766)
++|+.|++++|.+. +.+|.++
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHH
Confidence 56677777777776 5555544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-27 Score=250.02 Aligned_cols=244 Identities=18% Similarity=0.188 Sum_probs=208.8
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS 222 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 222 (766)
.++.++++.+.+...++..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..| |..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 46677888888876666667788899999999999998888899999999999999999987654 9999999999999
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcccc
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~ 302 (766)
+|.+++. | ..++|++|++++|++++..+. .+++|++|++++|++++..|..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9999853 3 348999999999999876554 4678999999999999988889999999999999999999877
Q ss_pred CCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc---C
Q 004248 303 SVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP---V 379 (766)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~---~ 379 (766)
+..++..+++|+.|+|++|++++..+ ...+++|++|+|++|++++..| . +...++|+.|++++|.+.+ +|. .
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchh-h-hcccCcccEEECcCCcccc-hhhHhhc
Confidence 76666678999999999999987733 3358999999999999996544 3 4567899999999999985 554 4
Q ss_pred CCCCCEEeccCCcCc-cccChhh
Q 004248 380 LGRFRLVDLSGNYFE-GRVPEYV 401 (766)
Q Consensus 380 l~~l~~ldLs~N~l~-g~~p~~~ 401 (766)
+++|+.|+|++|.++ +.+|.++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHH
Confidence 578999999999999 6666655
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-26 Score=258.12 Aligned_cols=221 Identities=20% Similarity=0.197 Sum_probs=194.1
Q ss_pred CCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEE
Q 004248 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 195 (766)
.++|+.|++++|.+.+..|..+.. +++|++|+|++|.+++.+| ++.+++|++|+|++|.+++. | ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence 348999999999999877777765 9999999999999998776 99999999999999999853 3 23899999
Q ss_pred EccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccC-CCCCCCEEEccCCcC
Q 004248 196 DLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG-DLDSLVDLDLSMNSL 274 (766)
Q Consensus 196 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l 274 (766)
++++|.+++..+. .+++|+.|+|++|.+++..|..++++++|++|+|++|.+++.+|..+. .+++|++|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999976654 468899999999999998899999999999999999999998888886 799999999999999
Q ss_pred CccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCC-CCCC
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT-GPLP 352 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~~p 352 (766)
++.. .+..+++|+.|++++|.+++..+ . |..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ +.+|
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cccc--ccccCCCCCEEECCCCCCCCCCH-h-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9763 34469999999999999997544 3 5789999999999999997 5667899999999999999987 4444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=224.46 Aligned_cols=204 Identities=25% Similarity=0.308 Sum_probs=172.5
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS 222 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 222 (766)
+++++++++|.++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35678888888874 565554 689999999999998777789999999999999999997666678899999999999
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcccc
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~ 302 (766)
+|.+++..+..+.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..|..+++|+.|++++|.+++ +
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-V 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-C
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-e
Confidence 999997777778999999999999999998888888999999999999999997777778888999999999888875 4
Q ss_pred CCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCC
Q 004248 303 SVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350 (766)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 350 (766)
+...|..+++|+.|+|++|++++.++..+..+++|+.|+|++|.+...
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 555567788888888888888887777788888888888888877643
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-27 Score=267.20 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=143.1
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---------HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---------TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
...++||+|+||.||+|. ..++.+|+|+....... .++|.+|++++++++|||||++..++.. +++.|+
T Consensus 339 ~~~~~LG~G~fg~Vy~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-~~~~~l 416 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDS-YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-LDNKRI 416 (540)
T ss_dssp ---------CCEEEEEEE-CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-TTTTEE
T ss_pred CCCCEEeeCCCEEEEEEE-ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-CCccEE
Confidence 345789999999999994 45678999987543221 3458999999999999999976666655 456799
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|||||++|+|.+++.+ +..++.|+++||+|||++ +|+||||||+|||+++ ++||+|||++
T Consensus 417 VmE~~~ggsL~~~l~~---------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla 476 (540)
T 3en9_A 417 MMSYINGKLAKDVIED---------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLG 476 (540)
T ss_dssp EEECCCSEEHHHHSTT---------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTC
T ss_pred EEECCCCCCHHHHHHH---------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccC
Confidence 9999999999999963 457899999999999998 9999999999999999 9999999999
Q ss_pred hhcCCCC----------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 688 CAQGGDA----------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 688 ~~~~~~~----------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+...... ....||+.|+|||.+.....+ |+.++|+||..+-.+|.+.++.++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~-------Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 477 KISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEG-------YKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred EECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHhcccc
Confidence 8764421 245789999999988654344 477899999999999999888776
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=232.25 Aligned_cols=203 Identities=22% Similarity=0.282 Sum_probs=105.9
Q ss_pred CCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEE
Q 004248 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLN 244 (766)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 244 (766)
+++|+.|++++|.++. + ..+..+++|++|+|++|++++ + ..+..+++|++|+|++|.+++..|..+.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3444444444444331 1 123444444444444444443 1 2344444444444444444444344444445555555
Q ss_pred ccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCC
Q 004248 245 VSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFT 324 (766)
Q Consensus 245 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~ 324 (766)
|++|++++..|..++++++|++|++++|++++..+..+.++++|+.|++++|.+++ ++...|..+++|+.|++++|+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCC
Confidence 55555544444444455555555555555554444444445555555555555442 23333455566666666666666
Q ss_pred CCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccccChhh
Q 004248 325 GPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 325 ~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
+.+|..+..+++|+.|++++|.+.+..| +++.++++.|.++|.+|.++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----------------------------~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP-----------------------------GIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT-----------------------------TTHHHHHHHHHTGGGBBCTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc-----------------------------HHHHHHHHHHhCCCcccCcc
Confidence 6666667777777777777777665443 34556666777777777665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=243.98 Aligned_cols=254 Identities=30% Similarity=0.330 Sum_probs=210.1
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
..++.|++++|.+. .+|..++ ++|++|+|++|.++. +|. .+++|++|+|++|+++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 46899999999987 8888663 799999999999984 555 6799999999999998 4676 779999999
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
|++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|. .+++|+.|++++|++++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99999986 555 67899999999999985 6764 4899999999999986 454 35789999999999986
Q ss_pred cCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS 356 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 356 (766)
+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++..+ . .+++|+.|+|++|++++ +|
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-lp---- 237 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS-LP---- 237 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSC-CC----
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCc-CC----
Confidence 56 567899999999999985 443 3478999999999998654 3 35899999999999996 66
Q ss_pred cCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCccccChhhhhccc-----CCCcccCCC
Q 004248 357 NVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNAS-----SLDSNCLQN 415 (766)
Q Consensus 357 ~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~p~~~~~~~~-----~l~~n~l~~ 415 (766)
...++|+.|++++|.++ .+|..+++|+.|+|++|+|+ .+|..+. ++. ++++|.+.+
T Consensus 238 ~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~-~lp~~l~-~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC-SCCGGGG-GSCTTCEEECCSCCCCH
T ss_pred CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC-cCCHHHh-hccccCEEEecCCCCCC
Confidence 34478999999999998 57778899999999999999 7887764 222 345555543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=230.88 Aligned_cols=220 Identities=27% Similarity=0.328 Sum_probs=148.3
Q ss_pred EEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCC
Q 004248 121 SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200 (766)
Q Consensus 121 ~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 200 (766)
.+++..+.+...++. . .+++|+.|++++|.++.. ..+..+++|++|+|++|.+++ + +.+.++++|++|+|++|
T Consensus 23 ~l~l~~~~~~~~~~~--~-~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQ--N-ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHTCSCTTSEECH--H-HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS
T ss_pred HHHhcCccccccccc--c-cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC
Confidence 344444444433322 1 266777777777776532 246667777777777777765 2 35677777777777777
Q ss_pred CCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCc
Q 004248 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPS 280 (766)
Q Consensus 201 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 280 (766)
++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..++++++|++|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 77766666667777777777777777766666667777777777777777766666667777777777777777766666
Q ss_pred ccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCccc
Q 004248 281 ELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSR 355 (766)
Q Consensus 281 ~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 355 (766)
.++++++|++|++++|.+++. +...|..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred HhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 667777777777777777753 334456777777777777776643 4467777888888888777654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=228.20 Aligned_cols=226 Identities=22% Similarity=0.217 Sum_probs=172.9
Q ss_pred EEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCc
Q 004248 146 ALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225 (766)
Q Consensus 146 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 225 (766)
..+.++..++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3445555554 3555443 579999999999997777789999999999999999998777789999999999999999
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCcc-CCcccCCCCCCCEEEccCccCccccCC
Q 004248 226 LTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS-VPSELRGLRSLQKFVIGNNFLSGNLSV 304 (766)
Q Consensus 226 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-~p~~l~~l~~L~~L~ls~N~l~g~~~~ 304 (766)
+++..|..+.++++|++|++++|++++..+..++++++|++|++++|++++. +|..+.++++|++|++++|.+++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~- 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH-
Confidence 9987778899999999999999999887777889999999999999999873 68888889999999999998876433
Q ss_pred CccCCCCccc----EEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC
Q 004248 305 NLFPTVSQLQ----IIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL 380 (766)
Q Consensus 305 ~~~~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l 380 (766)
..+..+.+|+ .|++++|++++.++..+.. .+|+.|+|++|++++..+ ..+. .+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~---------------------~l 223 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD-GIFD---------------------RL 223 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT-TTTT---------------------TC
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH-hHhc---------------------cc
Confidence 3344455555 7788888887666655543 367777777777774332 2222 24
Q ss_pred CCCCEEeccCCcCccccC
Q 004248 381 GRFRLVDLSGNYFEGRVP 398 (766)
Q Consensus 381 ~~l~~ldLs~N~l~g~~p 398 (766)
++|+.|+|++|++++..|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 556667777777776555
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=235.03 Aligned_cols=225 Identities=20% Similarity=0.190 Sum_probs=167.1
Q ss_pred CCCCCEEecCCCCCCCC----CchhhhhCCCCCCEEEccCCCCCccCCccc--CCCCCCcEEEeecCcCCCCCC----cc
Q 004248 116 LTHLASFNASRFLLPGS----IPDWLGQQLPTLQALDLRSCSISGVIPFSL--GNLTNLTSLYLSDNGLTGTIP----SS 185 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~----ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~ 185 (766)
-..++.+.+..+.++.. ++..+ . +++|++|+|++|.+++..|..+ .++++|++|+|++|.+++..| ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVL-A-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHH-H-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhc-c-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 33467777777665421 11222 2 5678999999999988888887 888899999999999887655 34
Q ss_pred ccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCC--C--CCCCCCCCCccEEEccCCCCCCCCcc----c
Q 004248 186 LGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS--I--PPGLGTLSKLQYLNVSNNSLASSIPA----Q 257 (766)
Q Consensus 186 l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~----~ 257 (766)
+..+++|++|+|++|++++..|..|+.+++|++|+|++|++.+. + +..++.+++|++|+|++|+++. +|. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 55788899999999998888888888888999999999887642 2 2334678888888888888863 333 2
Q ss_pred cCCCCCCCEEEccCCcCCccCCcccCCC---CCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCC
Q 004248 258 LGDLDSLVDLDLSMNSLSGSVPSELRGL---RSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSM 334 (766)
Q Consensus 258 l~~l~~L~~L~Ls~N~l~g~~p~~l~~l---~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 334 (766)
++++++|++|+|++|++++..|..+..+ ++|++|++++|.++ .+|..++ ++|+.|+|++|++++.+ . +..+
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~~-~-~~~l 293 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRAP-Q-PDEL 293 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSCC-C-TTSC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCCc-h-hhhC
Confidence 4677888888888888888777777666 58888888888887 5666553 57778888888887652 2 5667
Q ss_pred CCCCEEEccCCCCCC
Q 004248 335 PQLRLLDISRNNFTG 349 (766)
Q Consensus 335 ~~L~~L~Ls~N~l~g 349 (766)
++|+.|+|++|+++.
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 778888888887763
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=224.05 Aligned_cols=200 Identities=28% Similarity=0.318 Sum_probs=103.3
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+++|+++++++|.++. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++. |.. +.+++|+.|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEE
Confidence 4444555555555442 232222 3455555555555544444455555555555555555432 211 4455555555
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|+++ .+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT- 161 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-
Confidence 5555554 44555555555555555555555544455555555555555555555444444555555555555555554
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
.+|...|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 344444455555555555555555 33444445556666666666654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-24 Score=219.08 Aligned_cols=160 Identities=26% Similarity=0.287 Sum_probs=135.6
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 47889999999998888888889999999999999998877888888999999999999998777778888899999999
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN 301 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~ 301 (766)
++|++++..+..+..+++|++|+|++|++++..|..|+.+++|++|+|++|++++..+..+..+++|+.|++++|.+++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99988876666678888899999999988877776788888888888888888877777788888888888888877653
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=220.92 Aligned_cols=204 Identities=28% Similarity=0.296 Sum_probs=181.0
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 192 (766)
+.++++++.++++++.+. .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|.+++. |.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 567888999999999885 678765 36899999999999999899999999999999999999864 333 789999
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 004248 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 193 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 272 (766)
++|+|++|+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 68889999999999999999999877788999999999999999999887788899999999999999
Q ss_pred cCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC
Q 004248 273 SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG 325 (766)
Q Consensus 273 ~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~ 325 (766)
++++..+..|.++++|+.|++++|.++ .+|..++ ...+|+.|+|++|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCccC
Confidence 999777777899999999999999998 6777764 45689999999999864
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=215.04 Aligned_cols=196 Identities=22% Similarity=0.249 Sum_probs=136.2
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCc-CCCCCCccccCCCCCCEEEccC-CCCCCCCCcccCCCCCCCEE
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG-LTGTIPSSLGQLSVLSVLDLSR-NSLTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 219 (766)
++|++|+|++|++++..+..|.++++|++|+|++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478899999999998888789999999999999997 8766666888899999999998 88887767788888899999
Q ss_pred eccCCcCCCCCCCCCCCCCCcc---EEEccCC-CCCCCCccccCCCCCCC-EEEccCCcCCccCCcccCCCCCCCEEEcc
Q 004248 220 DISSNYLTGSIPPGLGTLSKLQ---YLNVSNN-SLASSIPAQLGDLDSLV-DLDLSMNSLSGSVPSELRGLRSLQKFVIG 294 (766)
Q Consensus 220 ~Ls~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls 294 (766)
++++|.+++ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999988885 665 77777777 8888888 77766666677777777 7777777776 333322222455555555
Q ss_pred Ccc-CccccCCCccCCC-CcccEEEccCCCCCCCCCcccCCCCCCCEEEccC
Q 004248 295 NNF-LSGNLSVNLFPTV-SQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344 (766)
Q Consensus 295 ~N~-l~g~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 344 (766)
+|. ++ .++...|..+ ++|+.|++++|++++.++. .+++|+.|++++
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 552 44 3333344444 4555555555555443332 334444444443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-27 Score=264.53 Aligned_cols=66 Identities=32% Similarity=0.333 Sum_probs=27.6
Q ss_pred ccCCCCCEEecCCCCCCCCCchhhhhCCC----CCCEEEccCCCCCc----cCCcccCCCCCCcEEEeecCcCC
Q 004248 114 VNLTHLASFNASRFLLPGSIPDWLGQQLP----TLQALDLRSCSISG----VIPFSLGNLTNLTSLYLSDNGLT 179 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~ip~~~~~~l~----~L~~L~Ls~N~l~g----~~p~~l~~l~~L~~L~Ls~N~l~ 179 (766)
..+++|++|++++|.+.+..+..+...++ +|++|+|++|.++. .+|..+.++++|++|+|++|.++
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 33444444444444443322323322233 34444444444442 23444444444444444444443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=226.87 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=145.3
Q ss_pred CCCCCEEEccCCCCCccCCc---ccCCCCCCcEEEeecCcCCCCCCccc--cCCCCCCEEEccCCCCCCCCC----cccC
Q 004248 141 LPTLQALDLRSCSISGVIPF---SLGNLTNLTSLYLSDNGLTGTIPSSL--GQLSVLSVLDLSRNSLTGNIP----TSFG 211 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~L~~L~~L~Ls~N~l~~~~p----~~~~ 211 (766)
-..++.|++.++.++...-. .+..+++|++|+|++|.+++..|..+ .++++|++|+|++|++++..| ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888877532110 12234668999999999888888887 888889999999998887655 3455
Q ss_pred CCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCC--C--ccccCCCCCCCEEEccCCcCCccCCc----ccC
Q 004248 212 LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS--I--PAQLGDLDSLVDLDLSMNSLSGSVPS----ELR 283 (766)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~g~~p~----~l~ 283 (766)
.+++|++|+|++|.+++..|..++.+++|++|+|++|++.+. + +..++.+++|++|+|++|+++. +|. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 788888888888888877777888888888888888887642 2 2234677788888888887762 222 235
Q ss_pred CCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCC---CCCCEEEccCCCCCCCCCcccccCCC
Q 004248 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSM---PQLRLLDISRNNFTGPLPNSRSNVNT 360 (766)
Q Consensus 284 ~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~g~~p~~~~~~~~ 360 (766)
++++|++|++++|.+++..|.. +..+ ++|++|+|++|+++ .+|... .+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~-------------------------~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~ 272 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPS-------------------------APRCMWSSALNSLNLSFAGLE-QVPKGL---PA 272 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSC-------------------------CSSCCCCTTCCCEECCSSCCC-SCCSCC---CS
T ss_pred cCCCCCEEECCCCCCCccchhh-------------------------HHhccCcCcCCEEECCCCCCC-chhhhh---cC
Confidence 5566666666666665544433 3332 34555555555554 334322 13
Q ss_pred CCcEEEccCCcCcc-CCCcCCCCCCEEeccCCcCc
Q 004248 361 STVELNISQNMFYG-GLTPVLGRFRLVDLSGNYFE 394 (766)
Q Consensus 361 ~l~~L~ls~N~l~g-~~~~~l~~l~~ldLs~N~l~ 394 (766)
+|+.|++++|.+++ ..+..+++|+.|+|++|+|+
T Consensus 273 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 45555555555554 33445667777777777775
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-26 Score=244.91 Aligned_cols=212 Identities=21% Similarity=0.266 Sum_probs=126.9
Q ss_pred CCCCccceeecCCCEEEEEcCCCCcCCCCCCCCccchhhhccC--CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccC
Q 004248 74 PCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNL--THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRS 151 (766)
Q Consensus 74 ~C~~W~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~ 151 (766)
.|..|.++.|+...+..+++++... .+..+..+ ++++.|++++|.+.+..|.. + .+++|++|+|++
T Consensus 35 vc~~W~~~~~~~~~~~~l~l~~~~~----------~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~-~~~~L~~L~L~~ 102 (336)
T 2ast_B 35 VCKRWYRLASDESLWQTLDLTGKNL----------HPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-F-SPFRVQHMDLSN 102 (336)
T ss_dssp SCHHHHHHHTCSTTSSEEECTTCBC----------CHHHHHHHHHTTCSEEECTTCEECSCCCSC-C-CCBCCCEEECTT
T ss_pred HHHHHHHHhcCchhheeeccccccC----------CHHHHHhhhhccceEEEcCCccccccchhh-c-cCCCCCEEEccC
Confidence 4668999988755577777765321 12234444 56666666666666555542 2 266666666666
Q ss_pred CCCCcc-CCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCC-CCCC-CCCcccCCCCCCCEEeccCC-cCC
Q 004248 152 CSISGV-IPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN-SLTG-NIPTSFGLLKNLSSLDISSN-YLT 227 (766)
Q Consensus 152 N~l~g~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N-~l~~-~~p~~~~~l~~L~~L~Ls~N-~l~ 227 (766)
|.+++. +|..+..+++|++|+|++|.+++..|..++++++|++|+|++| .+++ .+|..+.++++|++|+|++| .++
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 666554 5556666666666666666666556666666666666666666 4554 24555556666666666666 555
Q ss_pred CC-CCCCCCCCC-CccEEEccCC--CCC-CCCccccCCCCCCCEEEccCCc-CCccCCcccCCCCCCCEEEccCcc
Q 004248 228 GS-IPPGLGTLS-KLQYLNVSNN--SLA-SSIPAQLGDLDSLVDLDLSMNS-LSGSVPSELRGLRSLQKFVIGNNF 297 (766)
Q Consensus 228 ~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~g~~p~~l~~l~~L~~L~ls~N~ 297 (766)
+. ++..+..++ +|++|++++| .++ +.+|..+.++++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 32 344455566 6666666666 343 3344455556666666666666 555555555666666666666553
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=212.67 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=170.7
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCC-CCCCCCcccCCCCCCCEEeccC-CcCCCCCCCCCCCCCCccEE
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS-LTGNIPTSFGLLKNLSSLDISS-NYLTGSIPPGLGTLSKLQYL 243 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L 243 (766)
++|++|+|++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|+|++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999998777789999999999999997 8876677899999999999999 99997767789999999999
Q ss_pred EccCCCCCCCCccccCCCCCCC---EEEccCC-cCCccCCcccCCCCCCC-EEEccCccCccccCCCccCCCCcccEEEc
Q 004248 244 NVSNNSLASSIPAQLGDLDSLV---DLDLSMN-SLSGSVPSELRGLRSLQ-KFVIGNNFLSGNLSVNLFPTVSQLQIIVL 318 (766)
Q Consensus 244 ~Ls~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~g~~p~~l~~l~~L~-~L~ls~N~l~g~~~~~~~~~l~~L~~L~L 318 (766)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|+ .|++++|.++ .+|...|.. ++|+.|+|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 999999987 676 88889998 9999999 99987778899999999 9999999998 788777776 89999999
Q ss_pred cCCC-CCCCCCcccCCC-CCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCC
Q 004248 319 RQNG-FTGPPPDVLWSM-PQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370 (766)
Q Consensus 319 ~~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N 370 (766)
++|+ +++.++..|..+ ++|+.||+++|++++ +|.. ...+++.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCc
Confidence 9995 998888889999 999999999999984 5532 3345555555543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=207.07 Aligned_cols=180 Identities=22% Similarity=0.299 Sum_probs=112.3
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS 222 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 222 (766)
..++++++++.++ .+|..+. ++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777776 3444443 466666776666666666666666666666666666666555566666666666666
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcccc
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~ 302 (766)
+|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------- 150 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--------------------- 150 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH---------------------
Confidence 66666555555556666666666666665544444555555555555555555433333
Q ss_pred CCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCC
Q 004248 303 SVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350 (766)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 350 (766)
|..+++|+.|+|++|++++.++..+..+++|+.|+|++|++++.
T Consensus 151 ----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 ----FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 34555566666666666666666777777888888888887765
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-26 Score=257.52 Aligned_cols=303 Identities=20% Similarity=0.174 Sum_probs=230.1
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhh-hccCC----CCCEEecCCCCCCC----CCchhhhhCCCCCCEEEccCCCCCc
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADA-LVNLT----HLASFNASRFLLPG----SIPDWLGQQLPTLQALDLRSCSISG 156 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~-l~~l~----~L~~L~ls~n~l~g----~ip~~~~~~l~~L~~L~Ls~N~l~g 156 (766)
.+++.+++++..... ..+.. ...+. +|++|++++|.+.. .+|..+.. +++|++|+|++|.+++
T Consensus 56 ~~L~~L~Ls~n~l~~-------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 56 PALAELNLRSNELGD-------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTCCEEECTTCCCHH-------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS-CTTCCEEECCSSBCHH
T ss_pred CCcCEEeCCCCcCCh-------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc-CCceeEEECCCCcCch
Confidence 457788888754211 01112 22344 69999999999874 56777654 9999999999999976
Q ss_pred cCCccc-----CCCCCCcEEEeecCcCCCC----CCccccCCCCCCEEEccCCCCCCCCCcccC-----CCCCCCEEecc
Q 004248 157 VIPFSL-----GNLTNLTSLYLSDNGLTGT----IPSSLGQLSVLSVLDLSRNSLTGNIPTSFG-----LLKNLSSLDIS 222 (766)
Q Consensus 157 ~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls 222 (766)
..+..+ ...++|++|+|++|++++. ++..+..+++|++|+|++|.++...+..+. .+++|+.|+|+
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 544433 3367899999999999864 366677889999999999998765444443 36799999999
Q ss_pred CCcCCCC----CCCCCCCCCCccEEEccCCCCCCCC-----ccccCCCCCCCEEEccCCcCCcc----CCcccCCCCCCC
Q 004248 223 SNYLTGS----IPPGLGTLSKLQYLNVSNNSLASSI-----PAQLGDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQ 289 (766)
Q Consensus 223 ~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~ 289 (766)
+|.+++. ++..+..+++|++|++++|.++... +..+..+++|++|++++|++++. ++..+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 9999864 5677788999999999999987532 23344689999999999999864 677788899999
Q ss_pred EEEccCccCccccC----CCccCCCCcccEEEccCCCCCCC----CCcccCCCCCCCEEEccCCCCCCCCCcccc----c
Q 004248 290 KFVIGNNFLSGNLS----VNLFPTVSQLQIIVLRQNGFTGP----PPDVLWSMPQLRLLDISRNNFTGPLPNSRS----N 357 (766)
Q Consensus 290 ~L~ls~N~l~g~~~----~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~----~ 357 (766)
+|++++|.+++..+ ..+....++|+.|++++|.+++. ++..+..+++|++||+++|++++..+.... .
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 99999999864322 22223446899999999999876 566777889999999999999864332221 1
Q ss_pred CCCCCcEEEccCCcCcc----CCCc---CCCCCCEEeccCCcCccc
Q 004248 358 VNTSTVELNISQNMFYG----GLTP---VLGRFRLVDLSGNYFEGR 396 (766)
Q Consensus 358 ~~~~l~~L~ls~N~l~g----~~~~---~l~~l~~ldLs~N~l~g~ 396 (766)
..+.|+.|++++|.+++ .+|. .+++|+.|||++|++++.
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 25689999999999986 5554 368999999999999865
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-24 Score=234.28 Aligned_cols=220 Identities=19% Similarity=0.210 Sum_probs=154.7
Q ss_pred CCCEEecCCCCCCCCCchhhhhCC--CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCC-CCccccCCCCCCE
Q 004248 118 HLASFNASRFLLPGSIPDWLGQQL--PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGT-IPSSLGQLSVLSV 194 (766)
Q Consensus 118 ~L~~L~ls~n~l~g~ip~~~~~~l--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~L~~L~~ 194 (766)
.++.++++++.+. |..+.. + ++++.|++++|.+.+..+. +.++++|++|+|++|.+++. +|..+.++++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3677888887765 444433 5 7888888888888877665 55688888888888887755 7777788888888
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCC-cCCCC-CCCCCCCCCCccEEEccCC-CCCCC-CccccCCCC-CCCEEEc
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSN-YLTGS-IPPGLGTLSKLQYLNVSNN-SLASS-IPAQLGDLD-SLVDLDL 269 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~L~L 269 (766)
|+|++|.+++..|..++.+++|++|+|++| .+++. +|..+.++++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888887777777888888888888888 56642 5555667778888888888 77653 456667777 8888888
Q ss_pred cCC--cCC-ccCCcccCCCCCCCEEEccCcc-CccccCCCccCCCCcccEEEccCCCCCCCCCc---ccCCCCCCCEEEc
Q 004248 270 SMN--SLS-GSVPSELRGLRSLQKFVIGNNF-LSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD---VLWSMPQLRLLDI 342 (766)
Q Consensus 270 s~N--~l~-g~~p~~l~~l~~L~~L~ls~N~-l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~L 342 (766)
++| .++ +.+|..+.++++|+.|++++|. +++..+.. +..+++|+.|++++|. +..+. .+.++++|+.|++
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEec
Confidence 887 455 4556666677777777777777 55444433 3556677777777764 22222 4556666777776
Q ss_pred cCC
Q 004248 343 SRN 345 (766)
Q Consensus 343 s~N 345 (766)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 666
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-24 Score=224.21 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=120.7
Q ss_pred HHHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc-------------------CHHHHHHHHHHHhhc
Q 004248 526 YQQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV-------------------KTEAYLLELDFFSKV 586 (766)
Q Consensus 526 ~~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~-------------------~~~~~~~E~~~l~~l 586 (766)
...+......|...+.||+|+||.||+|...+|+.||||.++.... ...++.+|+++|+++
T Consensus 82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 3445555566778899999999999999998899999999964321 234689999999999
Q ss_pred CCCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCC
Q 004248 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDV 666 (766)
Q Consensus 587 ~H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDl 666 (766)
+ | +++.+++.. +..|+|||||++|+|.+ +.. .+...++.|++.||+|||+. +||||||
T Consensus 162 ~--~-~~v~~~~~~--~~~~lvmE~~~g~~L~~-l~~-------------~~~~~i~~qi~~~l~~lH~~---giiHrDl 219 (282)
T 1zar_A 162 Q--G-LAVPKVYAW--EGNAVLMELIDAKELYR-VRV-------------ENPDEVLDMILEEVAKFYHR---GIVHGDL 219 (282)
T ss_dssp T--T-SSSCCEEEE--ETTEEEEECCCCEEGGG-CCC-------------SCHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred c--C-CCcCeEEec--cceEEEEEecCCCcHHH-cch-------------hhHHHHHHHHHHHHHHHHHC---CCEeCCC
Confidence 9 5 677774433 45799999999999998 521 12346999999999999998 9999999
Q ss_pred CCCCeeeCCCCcEEeccchhhhhcCCCCccceeeecccCCCCCC
Q 004248 667 QASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSE 710 (766)
Q Consensus 667 Kp~NILl~~~~~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~ 710 (766)
||+|||++ ++.+||+|||+|+.. ..++|||.+.
T Consensus 220 kp~NILl~-~~~vkl~DFG~a~~~----------~~~~a~e~l~ 252 (282)
T 1zar_A 220 SQYNVLVS-EEGIWIIDFPQSVEV----------GEEGWREILE 252 (282)
T ss_dssp STTSEEEE-TTEEEECCCTTCEET----------TSTTHHHHHH
T ss_pred CHHHEEEE-CCcEEEEECCCCeEC----------CCCCHHHHHH
Confidence 99999999 999999999998643 3456666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-25 Score=240.46 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=161.4
Q ss_pred EEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCC----cccCCCC-CCcEEEeecCcCCCCCCccccCC-----C
Q 004248 121 SFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIP----FSLGNLT-NLTSLYLSDNGLTGTIPSSLGQL-----S 190 (766)
Q Consensus 121 ~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~L-----~ 190 (766)
.++++.|.++|.+|..+.. .++|++|||++|.+++..+ ..+.+++ +|++|+|++|++++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4577888888888876643 5669999999998887766 6777888 89999999998887777777665 8
Q ss_pred CCCEEEccCCCCCCCCCcccC----CC-CCCCEEeccCCcCCCCCCCC----CCC-CCCccEEEccCCCCCCCCc----c
Q 004248 191 VLSVLDLSRNSLTGNIPTSFG----LL-KNLSSLDISSNYLTGSIPPG----LGT-LSKLQYLNVSNNSLASSIP----A 256 (766)
Q Consensus 191 ~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~----l~~-l~~L~~L~Ls~N~l~~~~p----~ 256 (766)
+|++|+|++|++++..+..+. .+ ++|+.|+|++|.+++..+.. +.. .++|++|+|++|.++...+ .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 889999999988876666443 34 78888888888887654433 333 3588888888888875433 3
Q ss_pred ccCCCC-CCCEEEccCCcCCccCCccc----CCC-CCCCEEEccCccCccc----cCCCccCCCCcccEEEccCCCCCCC
Q 004248 257 QLGDLD-SLVDLDLSMNSLSGSVPSEL----RGL-RSLQKFVIGNNFLSGN----LSVNLFPTVSQLQIIVLRQNGFTGP 326 (766)
Q Consensus 257 ~l~~l~-~L~~L~Ls~N~l~g~~p~~l----~~l-~~L~~L~ls~N~l~g~----~~~~~~~~l~~L~~L~L~~N~l~~~ 326 (766)
.+..++ +|++|+|++|++++..+..+ ..+ ++|++|++++|.+++. ++..+....++|+.|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334454 88888888888877666443 344 5888888888887652 2222222235777788888877766
Q ss_pred CC----cccCCCCCCCEEEccCCCCCC
Q 004248 327 PP----DVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 327 ~p----~~l~~l~~L~~L~Ls~N~l~g 349 (766)
.+ ..+..+++|+.|+|++|.+.+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccc
Confidence 54 334566777777777777553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=201.48 Aligned_cols=133 Identities=28% Similarity=0.296 Sum_probs=71.9
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS 222 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 222 (766)
+|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45566666666655544455555666666666665554444445555555555555555554444445555555555555
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCC
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
+|++++..+..+.++++|++|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 55555444444555555555555555555444444455555555555555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-25 Score=243.37 Aligned_cols=240 Identities=20% Similarity=0.240 Sum_probs=138.5
Q ss_pred hhccCCCCCEEecCCCCCCCCCchhhh---hCCCCCCEEEccCC---CCCccCCccc-------CCCCCCcEEEeecCcC
Q 004248 112 ALVNLTHLASFNASRFLLPGSIPDWLG---QQLPTLQALDLRSC---SISGVIPFSL-------GNLTNLTSLYLSDNGL 178 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~g~ip~~~~---~~l~~L~~L~Ls~N---~l~g~~p~~l-------~~l~~L~~L~Ls~N~l 178 (766)
.+..+++|+.|++++|.+.+..+..+. ..+++|++|+|++| .+++.+|..+ .++++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 455667777777777766654333321 13667777777764 3445555444 5667777777777777
Q ss_pred CC----CCCccccCCCCCCEEEccCCCCCCCCCcccC----CC---------CCCCEEeccCCcCC-CCCC---CCCCCC
Q 004248 179 TG----TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG----LL---------KNLSSLDISSNYLT-GSIP---PGLGTL 237 (766)
Q Consensus 179 ~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~----~l---------~~L~~L~Ls~N~l~-~~~p---~~l~~l 237 (766)
++ .+|..+.++++|++|+|++|.++...+..+. .+ ++|++|+|++|+++ +.+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 65 3566666677777777777776533332222 22 66777777777665 3333 244556
Q ss_pred CCccEEEccCCCCC--C---CCccccCCCCCCCEEEccCCcCC----ccCCcccCCCCCCCEEEccCccCccc----cCC
Q 004248 238 SKLQYLNVSNNSLA--S---SIPAQLGDLDSLVDLDLSMNSLS----GSVPSELRGLRSLQKFVIGNNFLSGN----LSV 304 (766)
Q Consensus 238 ~~L~~L~Ls~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----g~~p~~l~~l~~L~~L~ls~N~l~g~----~~~ 304 (766)
++|++|+|++|+++ | .+|..+..+++|++|+|++|.++ +.+|..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 66666777666665 2 23335566666666666666664 45566666666666666666666543 221
Q ss_pred Cc-cCCCCcccEEEccCCCCCC----CCCccc-CCCCCCCEEEccCCCCCCCC
Q 004248 305 NL-FPTVSQLQIIVLRQNGFTG----PPPDVL-WSMPQLRLLDISRNNFTGPL 351 (766)
Q Consensus 305 ~~-~~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~g~~ 351 (766)
.+ ...+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 11 0124555566666666555 244444 44555566666655555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=214.35 Aligned_cols=192 Identities=26% Similarity=0.397 Sum_probs=135.9
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+++|++|++++|.++. +| .+..+++|++|+|++|.+++. +. +.++++|++|+|++|++++ +| .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 6677777777777764 33 467777777777777777643 33 7777777777777777765 33 577777777777
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|.+++ +|. +..+++|++|++++|.+++..+ ++.+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 77777765 333 6777777777777777765433 6677777777777777775333 7777777777777777765
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 349 (766)
..+ +..+++|+.|+|++|++++.+| +..+++|+.|++++|++++
T Consensus 188 ~~~---l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP---LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG---GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh---hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 333 4667778888888888876653 7778888888888888874
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-25 Score=242.28 Aligned_cols=244 Identities=17% Similarity=0.178 Sum_probs=147.6
Q ss_pred CCchhhhhCCCCCCEEEccCCCCCccC----CcccCCCCCCcEEEeecC---cCCCCCCccc-------cCCCCCCEEEc
Q 004248 132 SIPDWLGQQLPTLQALDLRSCSISGVI----PFSLGNLTNLTSLYLSDN---GLTGTIPSSL-------GQLSVLSVLDL 197 (766)
Q Consensus 132 ~ip~~~~~~l~~L~~L~Ls~N~l~g~~----p~~l~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~L~~L~~L~L 197 (766)
.++..+.. +++|++|+|++|.+++.. +..+..+++|++|+|++| ++++.+|..+ .++++|++|+|
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 35666655 888999999999888653 344778888888888885 4445556554 67788888888
Q ss_pred cCCCCCC----CCCcccCCCCCCCEEeccCCcCCCCCCCC----CCCC---------CCccEEEccCCCCC-CCCc---c
Q 004248 198 SRNSLTG----NIPTSFGLLKNLSSLDISSNYLTGSIPPG----LGTL---------SKLQYLNVSNNSLA-SSIP---A 256 (766)
Q Consensus 198 s~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~p---~ 256 (766)
++|.+++ .+|..+..+++|++|+|++|.++...+.. +..+ ++|++|+|++|+++ +.+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 8888876 36667777788888888888775332222 2222 66777777777765 3333 3
Q ss_pred ccCCCCCCCEEEccCCcCC--c---cCCcccCCCCCCCEEEccCccCc----cccCCCccCCCCcccEEEccCCCCCCC-
Q 004248 257 QLGDLDSLVDLDLSMNSLS--G---SVPSELRGLRSLQKFVIGNNFLS----GNLSVNLFPTVSQLQIIVLRQNGFTGP- 326 (766)
Q Consensus 257 ~l~~l~~L~~L~Ls~N~l~--g---~~p~~l~~l~~L~~L~ls~N~l~----g~~~~~~~~~l~~L~~L~L~~N~l~~~- 326 (766)
.+..+++|++|+|++|+++ | .+|..+..+++|+.|++++|.++ +.++. .+..+++|+.|+|++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhh
Confidence 4555666777777777665 2 23335556666666666666654 23332 123444455555555555443
Q ss_pred ---CCccc--CCCCCCCEEEccCCCCCC----CCCcccccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCcccc
Q 004248 327 ---PPDVL--WSMPQLRLLDISRNNFTG----PLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRV 397 (766)
Q Consensus 327 ---~p~~l--~~l~~L~~L~Ls~N~l~g----~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~g~~ 397 (766)
+|..+ +.+++|++|+|++|++++ .+|.... ..+++|+.|+|++|++++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~---------------------~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID---------------------EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH---------------------HHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH---------------------hcCCCceEEEccCCcCCcch
Confidence 23333 224445555555444443 1222111 12577888888888888766
Q ss_pred C
Q 004248 398 P 398 (766)
Q Consensus 398 p 398 (766)
|
T Consensus 320 ~ 320 (386)
T 2ca6_A 320 D 320 (386)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=211.29 Aligned_cols=198 Identities=29% Similarity=0.419 Sum_probs=166.4
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 192 (766)
..++++|+.|++++|.+.. +| .+.. +++|++|+|++|.+++..+ +.++++|++|+|++|++++ +| .+.++++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 4467788999999988754 66 4544 9999999999999987655 8999999999999999985 34 68899999
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 004248 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 193 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 272 (766)
++|+|++|++++ +|. +..+++|+.|+|++|.+++.. . +..+++|++|+|++|++++..+ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 999999999986 443 899999999999999998643 3 8899999999999999986443 889999999999999
Q ss_pred cCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCC
Q 004248 273 SLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP 328 (766)
Q Consensus 273 ~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p 328 (766)
++++..+ +..+++|++|++++|.+++..+ +..+++|+.|+|++|.+++.+.
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCCE
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCCe
Confidence 9986544 8889999999999999986553 5788999999999999987543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=231.08 Aligned_cols=189 Identities=28% Similarity=0.386 Sum_probs=116.5
Q ss_pred CCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEcc
Q 004248 119 LASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS 198 (766)
Q Consensus 119 L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 198 (766)
|+.|++++|.+.+ +|..+ +++|++|+|++|.|+ .+| ..+++|++|+|++|+|++ +|. +.+ +|++|+|+
T Consensus 61 L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred ccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 4445555555554 66544 356777777777777 455 446777777777777775 565 554 67777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccC
Q 004248 199 RNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSV 278 (766)
Q Consensus 199 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~ 278 (766)
+|++++ +|. .+++|+.|+|++|.+++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777765 555 46677777777777764 554 45667777777777665 555 44 66666666666666 44
Q ss_pred CcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcc
Q 004248 279 PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354 (766)
Q Consensus 279 p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 354 (766)
|. +.. +| +.....|+.|+|++|+|+. +|..+..+++|+.|+|++|++++.+|..
T Consensus 196 p~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 196 PA-VPV--RN------------------HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC-CC----------------------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hh-HHH--hh------------------hcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 43 322 22 1112234677777777764 4555556777777777777777766643
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-24 Score=234.84 Aligned_cols=256 Identities=18% Similarity=0.178 Sum_probs=202.4
Q ss_pred EEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCC----ccccCCC-CCCEEEccCCCCCCCCCcccCCC-----CC
Q 004248 146 ALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIP----SSLGQLS-VLSVLDLSRNSLTGNIPTSFGLL-----KN 215 (766)
Q Consensus 146 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~L~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 215 (766)
+++|+.|.++|.+|..+...++|++|+|++|.+++..+ ..+.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 47899999999999988888889999999999997766 7788898 99999999999998878777765 99
Q ss_pred CCEEeccCCcCCCCCCCCC----CCC-CCccEEEccCCCCCCCCcccc----CC-CCCCCEEEccCCcCCccC----Ccc
Q 004248 216 LSSLDISSNYLTGSIPPGL----GTL-SKLQYLNVSNNSLASSIPAQL----GD-LDSLVDLDLSMNSLSGSV----PSE 281 (766)
Q Consensus 216 L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~g~~----p~~ 281 (766)
|++|+|++|.+++..+..+ ..+ ++|++|+|++|++++..+..+ .. .++|++|+|++|++++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999987666544 344 899999999999987766554 34 369999999999998643 344
Q ss_pred cCCCC-CCCEEEccCccCccccCCCc---cCCC-CcccEEEccCCCCCCC----CCcccCC-CCCCCEEEccCCCCCCCC
Q 004248 282 LRGLR-SLQKFVIGNNFLSGNLSVNL---FPTV-SQLQIIVLRQNGFTGP----PPDVLWS-MPQLRLLDISRNNFTGPL 351 (766)
Q Consensus 282 l~~l~-~L~~L~ls~N~l~g~~~~~~---~~~l-~~L~~L~L~~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~g~~ 351 (766)
+..++ +|++|++++|.+++..+..+ +... ++|+.|+|++|+++.. ++..+.. .++|++|||++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 55665 99999999999986544221 2334 5999999999999874 3445555 469999999999998654
Q ss_pred Cc---ccccCCCCCcEEEccCCcCccC----------CCcCCCCCCEEeccCCcCccccChhh
Q 004248 352 PN---SRSNVNTSTVELNISQNMFYGG----------LTPVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 352 p~---~~~~~~~~l~~L~ls~N~l~g~----------~~~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
+. .....+..|+.|++++|.+.+. ..+.+++|+.||+++|++.+..|..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 42 2234567899999999985432 12356778899999999988766544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=195.54 Aligned_cols=181 Identities=23% Similarity=0.227 Sum_probs=145.3
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
+.++.+++.++. +|..+ .++|++|+|++|++++..+..+.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467777777764 44333 468899999999998766677888999999999999998776667888999999999999
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~ 304 (766)
.+++..+..+.++++|++|+|++|++++..+..+.++++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9987666667889999999999999987777778888999999999999887766678888888888888887753
Q ss_pred CccCCCCcccEEEccCCCCCCCCCcccCCCCC
Q 004248 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQ 336 (766)
Q Consensus 305 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 336 (766)
.+++|+.|+++.|+++|.+|.+++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456777778888888888877766654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=223.71 Aligned_cols=186 Identities=25% Similarity=0.350 Sum_probs=105.5
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS 222 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 222 (766)
+|+.|+|++|.+++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 55666666666554 444332 45555555555555 344 234555555555555554 444 333 55555555
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcccc
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~ 302 (766)
+|.+++ +|. .+++|++|+|++|++++ +|. .+++|++|+|++|+ +++ +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~------------------------L~~-l 175 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ------------------------LTF-L 175 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC------------------------CSC-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC------------------------CCC-c
Confidence 555554 343 34455555555555543 333 33444455555544 443 3
Q ss_pred CCCccCCCCcccEEEccCCCCCCCCCcccCC-----CCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC
Q 004248 303 SVNLFPTVSQLQIIVLRQNGFTGPPPDVLWS-----MPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT 377 (766)
Q Consensus 303 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~ 377 (766)
|. |. ++|+.|+|++|+|+. +|. +.. .+.|+.|+|++|+|+ .+|..... +++|+.|++++|.+++.+|
T Consensus 176 p~--l~--~~L~~L~Ls~N~L~~-lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE--LP--ESLEALDVSTNLLES-LPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC--CC--TTCCEEECCSSCCSS-CCC-CC--------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHHHH
T ss_pred ch--hh--CCCCEEECcCCCCCc-hhh-HHHhhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCcCH
Confidence 33 22 455555566665553 233 332 233499999999999 68876654 8899999999999999887
Q ss_pred cCC
Q 004248 378 PVL 380 (766)
Q Consensus 378 ~~l 380 (766)
..+
T Consensus 248 ~~l 250 (571)
T 3cvr_A 248 ESL 250 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=209.80 Aligned_cols=214 Identities=18% Similarity=0.122 Sum_probs=148.8
Q ss_pred CCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCC-ccccCCCCCCE-EEccCCCCCCCCCcc
Q 004248 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIP-SSLGQLSVLSV-LDLSRNSLTGNIPTS 209 (766)
Q Consensus 132 ~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~-L~Ls~N~l~~~~p~~ 209 (766)
.||..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.++.|+++...|..
T Consensus 23 ~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 455544 3578999999999987767789999999999999999877665 46788888765 667778998877888
Q ss_pred cCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccC-CCCCCCCccccCCCC-CCCEEEccCCcCCccCCcccCCCCC
Q 004248 210 FGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN-NSLASSIPAQLGDLD-SLVDLDLSMNSLSGSVPSELRGLRS 287 (766)
Q Consensus 210 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~l~~l~~ 287 (766)
|..+++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .|+.|+|++|+++. +|.......+
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccc
Confidence 99999999999999999876666677777888888865 456544445555553 57778888888874 4444334556
Q ss_pred CCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC
Q 004248 288 LQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 288 L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
|+.+++++|+..+.+|...|..+++|+.|+|++|+|+..++..+ .+|+.|.+.+++--..+|
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC
Confidence 77777765444446666666666777777777777766555443 334444443333223444
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=205.34 Aligned_cols=240 Identities=20% Similarity=0.178 Sum_probs=193.5
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCC-cccCCCCCCCE-Eecc
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIP-TSFGLLKNLSS-LDIS 222 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls 222 (766)
++++-++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|+. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888999998 567666 3689999999999996555689999999999999999977666 46889998775 6677
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccC-CcCCccCCcccCCCC-CCCEEEccCccCcc
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSM-NSLSGSVPSELRGLR-SLQKFVIGNNFLSG 300 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~l~~l~-~L~~L~ls~N~l~g 300 (766)
.|+++...|..|..+++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 8999987788999999999999999999987777777778889999966 567665566777765 6889999999998
Q ss_pred ccCCCccCCCCcccEEEccC-CCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCc-
Q 004248 301 NLSVNLFPTVSQLQIIVLRQ-NGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTP- 378 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~- 378 (766)
.++...|. ..+|+.|++++ |.++..+++.|..+++|+.|||++|+|+ .+|.. ....+..|.+.++.-...+|+
T Consensus 168 ~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 168 EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCTTCCCCCCT
T ss_pred CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCCCcCcCCCc
Confidence 56766664 46899999975 6777777778999999999999999999 56643 345677787766655556663
Q ss_pred -CCCCCCEEeccCCcC
Q 004248 379 -VLGRFRLVDLSGNYF 393 (766)
Q Consensus 379 -~l~~l~~ldLs~N~l 393 (766)
.+.+|+.++++++..
T Consensus 243 ~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 243 EKLVALMEASLTYPSH 258 (350)
T ss_dssp TTCCSCCEEECSCHHH
T ss_pred hhCcChhhCcCCCCcc
Confidence 578899999976654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-22 Score=239.96 Aligned_cols=224 Identities=22% Similarity=0.210 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHhCCC----CCCCCCCCCCCCCCccceeecCCCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEE
Q 004248 47 SRTELAALFELRSSLGL----RRRDWPRKVDPCLVWNGVRCQNGSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASF 122 (766)
Q Consensus 47 ~~~~~~aLl~~k~~l~~----~~~~W~~~~~~C~~W~gv~C~~~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 122 (766)
...++++|+++...... ....|.....+++.|.++++.+.+++.++|.+..... .....|+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~-------------~~~~~l~~l 196 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDE-------------ANQALLQHK 196 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCc-------------chhhHhhcC
Confidence 34567889999876631 2245654445566899999988888888876543211 011223334
Q ss_pred ecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCC
Q 004248 123 NASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202 (766)
Q Consensus 123 ~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l 202 (766)
+|+.|.+ ..++++.|.+. ..|..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|
T Consensus 197 ~Ls~~~i---------------~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l 259 (727)
T 4b8c_D 197 KLSQYSI---------------DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL 259 (727)
T ss_dssp -----------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC
T ss_pred ccCcccc---------------cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC
Confidence 4444322 23344455544 44566666777777777777766 5666666677777777777777
Q ss_pred CCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCccc
Q 004248 203 TGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL 282 (766)
Q Consensus 203 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l 282 (766)
+ .+|..|++|++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|+++++|++|+|++|.|++.+|..+
T Consensus 260 ~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 260 T-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp S-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred c-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 6 56666777777777777777776 56666777777777777777665 556667777777777777777776666655
Q ss_pred CCCCC-CCEEEccCccCccccC
Q 004248 283 RGLRS-LQKFVIGNNFLSGNLS 303 (766)
Q Consensus 283 ~~l~~-L~~L~ls~N~l~g~~~ 303 (766)
..+.. +..+++++|.++|.+|
T Consensus 337 ~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 337 TEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCC
T ss_pred hhcchhhhHHhhccCcccCcCc
Confidence 43211 1124455555554444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=189.76 Aligned_cols=135 Identities=31% Similarity=0.349 Sum_probs=110.2
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 67888999999998888888888888999999988887655566788888888888888888776677788888888888
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCcc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS 277 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 277 (766)
++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888887 6777788888888888888888776666677778888888888877654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=183.59 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=85.7
Q ss_pred CCCEEEccCCCCCccCC-cccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 143 TLQALDLRSCSISGVIP-FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
.+++|+|++|.+++..| ..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45677777777766544 34566666777777776666655556666666666666666666655556666666666666
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+++
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 6666666556666666666666666666666556666666666666666665554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=182.30 Aligned_cols=156 Identities=20% Similarity=0.196 Sum_probs=129.5
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCC-ccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIP-SSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 223 (766)
+++++++|.++. +|..+. ..+++|+|++|++++..| ..|.++++|++|+|++|++++..|..|.++++|+.|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888888875 565553 456899999999987654 4578899999999999999887777888999999999999
Q ss_pred CcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccC
Q 004248 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303 (766)
Q Consensus 224 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~ 303 (766)
|.+++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99987777778888999999999999988888888888999999999999988888888888888888888888775433
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=199.87 Aligned_cols=164 Identities=28% Similarity=0.243 Sum_probs=125.7
Q ss_pred CchhhhhCCCCCCEEEccCCCCCccCCcccC-CCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccC
Q 004248 133 IPDWLGQQLPTLQALDLRSCSISGVIPFSLG-NLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211 (766)
Q Consensus 133 ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~ 211 (766)
+|..+ .+.++.|+|++|.|++..+..+. ++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.
T Consensus 33 iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 33 VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 55443 24578899999999888777777 888999999999988877777888888899999998888877777788
Q ss_pred CCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCcccc---CCCCCCCEEEccCCcCCccCCcccCCCCC-
Q 004248 212 LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQL---GDLDSLVDLDLSMNSLSGSVPSELRGLRS- 287 (766)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~- 287 (766)
++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+ ..+++|+.|+|++|+|++..+..+..++.
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 88888888888888887777888888888888888888876444444 56788888888888887655555665554
Q ss_pred -CCEEEccCccCc
Q 004248 288 -LQKFVIGNNFLS 299 (766)
Q Consensus 288 -L~~L~ls~N~l~ 299 (766)
|+.|++++|.+.
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 255666666553
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=180.24 Aligned_cols=133 Identities=25% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEcc
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 246 (766)
+|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44444444444444333444445555555555555544444455555555555555555553333334455555555555
Q ss_pred CCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc
Q 004248 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 247 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
+|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555554555555555555555555555444444555555555555555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-20 Score=213.87 Aligned_cols=171 Identities=30% Similarity=0.415 Sum_probs=97.9
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
|++|+.|+|++|.+... | .+..+++|+.|+|++|++++..| +.++++|+.|+|++|.+++ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 56666666666666543 2 36666666666666666664333 6666666666666666654 22 456666666666
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|.+++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 66666654 2 3355666666666666666543 345566666666666666655444 5555555555555555553
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGP 326 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~ 326 (766)
. + .+..+++|+.|+|++|.+++.
T Consensus 190 l-~--~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 L-R--ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C-G--GGTTCTTCSEEECCSEEEECC
T ss_pred C-h--HHccCCCCCEEEccCCcCcCC
Confidence 2 1 134444555555555554443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=192.84 Aligned_cols=170 Identities=30% Similarity=0.415 Sum_probs=99.1
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+++|++|++++|.++.. | .+..+++|++|+|++|++++..| +.++++|++|+|++|++++ +| .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 56677777777776643 2 36666677777777777664333 6666666667666666654 22 366666666666
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|++++. +.+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~---------- 182 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN---------- 182 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE----------
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE----------
Confidence 666666542 3455566666666666666543 345555555555555555554332 444444444
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 349 (766)
|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 183 ---------------L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 ---------------LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---------------EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ---------------EECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 44444444432 2 25566667777777766653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-20 Score=198.84 Aligned_cols=176 Identities=27% Similarity=0.252 Sum_probs=89.0
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCcccc-CCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLG-QLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 223 (766)
+++++++|.++. +|..+. ..++.|+|++|++++..+..+. ++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 455666665553 343332 2355555555555544444444 555555555555555544444455555555555555
Q ss_pred CcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccC
Q 004248 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303 (766)
Q Consensus 224 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~ 303 (766)
|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++ +|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-------------------------l~ 152 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-------------------------FP 152 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-------------------------CC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-------------------------eC
Confidence 55544333444444455555555444444444444444444444444444443 33
Q ss_pred CCcc---CCCCcccEEEccCCCCCCCCCcccCCCCC--CCEEEccCCCCC
Q 004248 304 VNLF---PTVSQLQIIVLRQNGFTGPPPDVLWSMPQ--LRLLDISRNNFT 348 (766)
Q Consensus 304 ~~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~ 348 (766)
...| ..+++|+.|+|++|+|+..++..+..++. |+.|+|++|.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3333 34556666666666666655555655555 356666666654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=179.43 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=124.4
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEec
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDI 221 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 221 (766)
++|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|.++++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57899999999999888889999999999999999999888999999999999999999999766667899999999999
Q ss_pred cCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 222 SSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 222 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999998888999999999999999999998888889999999999999999864
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-20 Score=190.18 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=105.8
Q ss_pred CCccceeecCCcceEEEEEE-cCCcE--EEEEEeeccccC-------------------------HHHHHHHHHHHhhcC
Q 004248 536 FSDANLIKNGHSGDLFRGIL-EGGIP--VVIKRIDLQSVK-------------------------TEAYLLELDFFSKVS 587 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~-~~g~~--vavK~l~~~~~~-------------------------~~~~~~E~~~l~~l~ 587 (766)
|+..+.||+|+||.||+|.. .+|+. ||||.++..... ...+.+|+++|.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999996 78989 999987543111 136889999999999
Q ss_pred CCCcccceeEEEecCCcEEEEEeeCCC-C----ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhc-cCCCCCe
Q 004248 588 HARLVPLLGHCMERENEKFLVYKYMPN-G----DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH-HECTLPF 661 (766)
Q Consensus 588 H~niv~l~~~~~~~~~~~~lV~Ey~~~-G----sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~i 661 (766)
|+++....-+.. +..++||||+.+ | +|.++... .++.+...++.|++.||+||| +. +|
T Consensus 129 ~~~i~~p~~~~~---~~~~lVmE~~g~~g~~~~~L~~~~~~----------~~~~~~~~i~~qi~~~l~~lH~~~---gi 192 (258)
T 1zth_A 129 EAGVSVPQPYTY---MKNVLLMEFIGEDELPAPTLVELGRE----------LKELDVEGIFNDVVENVKRLYQEA---EL 192 (258)
T ss_dssp HTTCCCCCEEEE---ETTEEEEECCEETTEECCBHHHHGGG----------GGGSCHHHHHHHHHHHHHHHHHTS---CE
T ss_pred hCCCCCCeEEEc---CCCEEEEEecCCCCCccccHHHHhhc----------cChHHHHHHHHHHHHHHHHHHHHC---CE
Confidence 887532222222 246999999942 4 55554421 234456789999999999999 76 99
Q ss_pred EecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 662 VHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 662 iHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|||||||+|||+++ .+||+|||+|...
T Consensus 193 vHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 193 VHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp ECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred EeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 99999999999998 9999999999765
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=210.00 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=167.6
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+..+..++|+.+.+...++ +..|++|+.|+|++|.++. +| .+..+++|+.|+|++|++++..| +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3345666778888776654 5788999999999999984 45 58999999999999999997655 89999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|.+++ +| .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999985 44 799999999999999999863 4588999999999999999975 678999999999999999997
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGP 350 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 350 (766)
..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++.
T Consensus 168 ~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 666 68899999999999999985 3589999999999999999864
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=187.60 Aligned_cols=173 Identities=27% Similarity=0.387 Sum_probs=150.5
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCC
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L 192 (766)
+..+++|+.|++++|.+.. +|. +.. +++|++|+|++|.+++..| +.++++|++|+|++|.+++ +| .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCccc-Chh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 4567889999999998854 554 544 9999999999999998655 9999999999999999986 44 49999999
Q ss_pred CEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCC
Q 004248 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272 (766)
Q Consensus 193 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 272 (766)
++|+|++|++++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..| +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999999864 5788999999999999999865 678999999999999999987655 899999999999999
Q ss_pred cCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 273 SLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 273 ~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
++++ +| .+..+++|+.|++++|.++.
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 9986 44 48889999999999998864
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=177.29 Aligned_cols=154 Identities=28% Similarity=0.289 Sum_probs=121.2
Q ss_pred CCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 004248 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223 (766)
Q Consensus 144 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 223 (766)
-+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356777777776 4555443 7888888888888887788888888888888888888766666778888888888888
Q ss_pred CcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccc
Q 004248 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN 301 (766)
Q Consensus 224 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~ 301 (766)
|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 8888766666788888888888888887 6777788888888888888888866666677777777777777776643
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-21 Score=227.10 Aligned_cols=280 Identities=10% Similarity=0.032 Sum_probs=161.0
Q ss_pred ccCCCCCEEecCCCCCCCC----CchhhhhCCCCCCEEEccCCCCC----ccCCcccCCCCCCcEEEeecCcCCCCCCcc
Q 004248 114 VNLTHLASFNASRFLLPGS----IPDWLGQQLPTLQALDLRSCSIS----GVIPFSLGNLTNLTSLYLSDNGLTGTIPSS 185 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~----ip~~~~~~l~~L~~L~Ls~N~l~----g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 185 (766)
.++++|+.|++++|.+.+. ++.... .+++|++|+|++|.++ +.++..+.++++|++|+|++|.+.+ +|..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQ-HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHH-HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHh-cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence 4789999999999987665 333333 4899999999999987 3445556788999999999998875 6777
Q ss_pred ccCCCCCCEEEccCCCCC---CCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCc-cccCCC
Q 004248 186 LGQLSVLSVLDLSRNSLT---GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP-AQLGDL 261 (766)
Q Consensus 186 l~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l 261 (766)
+.++++|+.|+++.+... +..+..+..+++|+.|+++++. .+.+|..+..+++|++|+|++|.+++... ..+..+
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 788888888888753322 2333455666677777766643 23456666666677777777766543322 223455
Q ss_pred CCCCEEEccCCcCCccCCcccCCCCCCCEEEcc------------------------------------CccCccccCCC
Q 004248 262 DSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIG------------------------------------NNFLSGNLSVN 305 (766)
Q Consensus 262 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls------------------------------------~N~l~g~~~~~ 305 (766)
++|++|+++++-..+.++..+..+++|++|+++ .|.+++.....
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 555555555222222222233344445555554 44444332222
Q ss_pred ccCCCCcccEEEcc----CCCCCCC-----CCcccCCCCCCCEEEccCCC--CCCCCCcccccCCCCCcEEEccCCcCcc
Q 004248 306 LFPTVSQLQIIVLR----QNGFTGP-----PPDVLWSMPQLRLLDISRNN--FTGPLPNSRSNVNTSTVELNISQNMFYG 374 (766)
Q Consensus 306 ~~~~l~~L~~L~L~----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~g~~p~~~~~~~~~l~~L~ls~N~l~g 374 (766)
+...+++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+.......++|+.|++++|.+++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 21224445555553 4444443 12223445555555554322 3332222222234556667777666654
Q ss_pred -CCC---cCCCCCCEEeccCCcCccc
Q 004248 375 -GLT---PVLGRFRLVDLSGNYFEGR 396 (766)
Q Consensus 375 -~~~---~~l~~l~~ldLs~N~l~g~ 396 (766)
.++ ..+++|+.|+|++|.+++.
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHH
Confidence 222 3456677777777776554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-21 Score=222.08 Aligned_cols=303 Identities=11% Similarity=0.047 Sum_probs=202.3
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccC--CCCCEEecCCCC-CCC-CCchhhhhCCCCCCEEEccCCCCCcc----C
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNL--THLASFNASRFL-LPG-SIPDWLGQQLPTLQALDLRSCSISGV----I 158 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~ls~n~-l~g-~ip~~~~~~l~~L~~L~Ls~N~l~g~----~ 158 (766)
.++.++|++.... ......+..+ ++|++|++++|. +.. .++. +...+++|++|+|++|.+++. +
T Consensus 113 ~L~~L~L~~~~i~-------~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 113 QLKSVHFRRMIVS-------DLDLDRLAKARADDLETLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp TCCEEEEESCBCC-------HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred CCCeEEeeccEec-------HHHHHHHHHhccccCcEEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHH
Confidence 4667777653211 1112234443 459999999875 111 1222 223489999999999998765 4
Q ss_pred CcccCCCCCCcEEEeecCcCCC----CCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCC---CCCC
Q 004248 159 PFSLGNLTNLTSLYLSDNGLTG----TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT---GSIP 231 (766)
Q Consensus 159 p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p 231 (766)
+..+.++++|++|+|++|.+++ .++..+.++++|++|+|++|.+.+ +|..+.++++|+.|+++.+... +..+
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence 4456788999999999999983 345556789999999999999986 7888999999999999864433 3455
Q ss_pred CCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCC-cccCCCCCCCEEEccCccCccccCCCccCCC
Q 004248 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP-SELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310 (766)
Q Consensus 232 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l 310 (766)
..+..+++|+.|+++++. .+.+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++ |.+.......++..+
T Consensus 264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC 341 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence 678899999999999864 35678888899999999999999876544 446899999999999 444332222233456
Q ss_pred CcccEEEcc-----------CCCCCCC-CCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEcc----CCcCcc
Q 004248 311 SQLQIIVLR-----------QNGFTGP-PPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNIS----QNMFYG 374 (766)
Q Consensus 311 ~~L~~L~L~-----------~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls----~N~l~g 374 (766)
++|+.|+++ .|.+++. ++.....+++|++|+++.|++++..+......+++|+.|+++ .|.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 677888887 3555433 222234467777777777777654443332334566666664 455544
Q ss_pred C-----CC---cCCCCCCEEeccCC--cCccccChh
Q 004248 375 G-----LT---PVLGRFRLVDLSGN--YFEGRVPEY 400 (766)
Q Consensus 375 ~-----~~---~~l~~l~~ldLs~N--~l~g~~p~~ 400 (766)
. ++ ..+++|+.|+|+++ .+++..+..
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 2 11 12455666666532 244444333
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-19 Score=173.75 Aligned_cols=152 Identities=19% Similarity=0.262 Sum_probs=103.4
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++.+..+++|++|++++|++++..|..|+.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 667777777777776 444 5777777777777777554 334677777777777777777766677777777777777
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
|++|.+++..|..+..+++|++|++++|.+.+.+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 77777776666667777777777777776323444 46677777777777777764 23 5666666666666666654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=172.33 Aligned_cols=155 Identities=20% Similarity=0.280 Sum_probs=133.8
Q ss_pred ccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCC
Q 004248 114 VNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 193 (766)
..+++|+.|++++|.+. .+| .+.. +++|++|++++|.++. +..+..+++|++|+|++|++++..|..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56778999999999887 677 4554 9999999999997753 45799999999999999999988899999999999
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCc
Q 004248 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273 (766)
Q Consensus 194 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 273 (766)
+|+|++|++++..|..++.+++|++|+|++|.+.+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 99999999998889999999999999999998444666 68999999999999999986 44 68899999999999999
Q ss_pred CCc
Q 004248 274 LSG 276 (766)
Q Consensus 274 l~g 276 (766)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-21 Score=219.93 Aligned_cols=180 Identities=23% Similarity=0.212 Sum_probs=113.0
Q ss_pred ccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCC-------------CCccCCcccCCCCCCcEEE-eecCcCC
Q 004248 114 VNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS-------------ISGVIPFSLGNLTNLTSLY-LSDNGLT 179 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~-------------l~g~~p~~l~~l~~L~~L~-Ls~N~l~ 179 (766)
..+++|+.|++++|.+. .||+.++. +++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45777888888888774 67888876 8888888887664 5666677777777777777 5554332
Q ss_pred CCCCc------cccC--CCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCC
Q 004248 180 GTIPS------SLGQ--LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251 (766)
Q Consensus 180 ~~~p~------~l~~--L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 251 (766)
. ++. .+.. ...|++|+|++|++++ +|. |+.+++|+.|+|++|.++ .+|..++++++|+.|+|++|+++
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 0 110 0000 0136666666666664 454 666666666666666666 56666666666666666666666
Q ss_pred CCCccccCCCCCCCEEEccCCcCCccC-CcccCCCCCCCEEEccCccCccc
Q 004248 252 SSIPAQLGDLDSLVDLDLSMNSLSGSV-PSELRGLRSLQKFVIGNNFLSGN 301 (766)
Q Consensus 252 ~~~p~~l~~l~~L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~ls~N~l~g~ 301 (766)
+ +| .++++++|++|+|++|++++.. |..++.+++|+.|++++|.+++.
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5 45 5666666666666666666554 66666666666666666666543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-19 Score=214.78 Aligned_cols=163 Identities=27% Similarity=0.291 Sum_probs=113.9
Q ss_pred EeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCC
Q 004248 172 YLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251 (766)
Q Consensus 172 ~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 251 (766)
+++.|.+. ..|..+..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|++|++|++|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 44556655 56778888999999999999987 67877778999999999999998 78888899999999999999998
Q ss_pred CCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCccc
Q 004248 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVL 331 (766)
Q Consensus 252 ~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 331 (766)
.+|..|+++++|++|+|++|.|+ .+|..|+++++|+.|+|++|.|++.+|..+......+..++|++|.+++.+|.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 67888999999999999999886 77888888999999999999888877654422112223467888888887775
Q ss_pred CCCCCCCEEEccCC
Q 004248 332 WSMPQLRLLDISRN 345 (766)
Q Consensus 332 ~~l~~L~~L~Ls~N 345 (766)
.|+.|+++.|
T Consensus 360 ----~l~~l~l~~n 369 (727)
T 4b8c_D 360 ----ERRFIEINTD 369 (727)
T ss_dssp ----C---------
T ss_pred ----ccceeEeecc
Confidence 3556666666
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-22 Score=226.13 Aligned_cols=188 Identities=22% Similarity=0.245 Sum_probs=127.0
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCc-------------CCCCCCccccCCCCCCEEE-ccCCCCCCCC
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG-------------LTGTIPSSLGQLSVLSVLD-LSRNSLTGNI 206 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~L~~L~~L~-Ls~N~l~~~~ 206 (766)
+++|+.|+|++|.++ .+|..++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---- 422 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---- 422 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH----
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc----
Confidence 666777777777775 567777777777777775553 3444455555555555555 343322
Q ss_pred CcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCC
Q 004248 207 PTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLR 286 (766)
Q Consensus 207 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 286 (766)
++|+.+.+++|.++. +|. ..|+.|+|++|++++ +|. ++++++|+.|+|++|+++ .+|..+++++
T Consensus 423 -------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 -------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp -------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred -------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 123333344444442 221 247778888888775 565 777788888888888887 6777788888
Q ss_pred CCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCC-CcccCCCCCCCEEEccCCCCCCCCC
Q 004248 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPP-PDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 287 ~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
+|+.|+|++|.+++ +| .+..+++|+.|+|++|+|++.+ |..+..+++|+.|+|++|++++.+|
T Consensus 487 ~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88888888888776 55 3577788888888888888876 8888888888888888888887655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=181.28 Aligned_cols=146 Identities=27% Similarity=0.317 Sum_probs=66.9
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+++|++|++++|.++. +| .+..+++|++|+|++|++++. |. +.++++|++|+|++|++++ +|.. .. ++|+.|+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 4555555555555542 22 344555555555555555432 22 4555555555555555543 2221 11 4455555
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
|++|++++ +| .+..+++|++|+|++|++++. | .++.+++|++|++++|++++. ..+..+++|+.|++++|.++
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 55554443 12 344444444444444444432 2 344444444444444444433 33444444444444444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-18 Score=175.27 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=147.3
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+.++..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|+|++|++++..| +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 556778889999988654 5788999999999999998 466 68899999999999999987544 99999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|++++ +|.. .. ++|++|+|++|++++. | .+..+++|++|++++|++++. | .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 99999986 5543 33 8999999999999863 4 589999999999999999875 4 68899999999999999987
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCc
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPD 329 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 329 (766)
. ..+..+++|+.|++++|.+++.+..
T Consensus 165 ~---~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 165 T---GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp C---TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred h---HHhccCCCCCEEeCCCCcccCCccc
Confidence 5 3468899999999999999877543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=161.18 Aligned_cols=109 Identities=29% Similarity=0.432 Sum_probs=45.3
Q ss_pred CCcEEEeecCcCCCCCCc-cccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEc
Q 004248 167 NLTSLYLSDNGLTGTIPS-SLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNV 245 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~-~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 245 (766)
+|++|+|++|++++..+. .+.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444433222 2344444444444444444444444444444444444444444333333444444444444
Q ss_pred cCCCCCCCCccccCCCCCCCEEEccCCcCC
Q 004248 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 246 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
++|++++..|..+..+++|++|+|++|.++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 444444433444444444444444444433
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-17 Score=159.85 Aligned_cols=132 Identities=27% Similarity=0.329 Sum_probs=113.0
Q ss_pred cEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCc-ccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccC
Q 004248 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPT-SFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247 (766)
Q Consensus 169 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 247 (766)
+++++++|+++ .+|..+.. +|++|+|++|++++..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888885 57776654 899999999999876664 488999999999999999988888999999999999999
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccC
Q 004248 248 NSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303 (766)
Q Consensus 248 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~ 303 (766)
|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888888899999999999999998888888888888888888888876544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-17 Score=157.00 Aligned_cols=133 Identities=27% Similarity=0.263 Sum_probs=92.9
Q ss_pred CCCCCEEEccCCCCC-ccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEE
Q 004248 141 LPTLQALDLRSCSIS-GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~-g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 219 (766)
.++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456777777777776 66777777777777777777777754 667777777777777777776667666667777777
Q ss_pred eccCCcCCCCC-CCCCCCCCCccEEEccCCCCCCCCc---cccCCCCCCCEEEccCCcCC
Q 004248 220 DISSNYLTGSI-PPGLGTLSKLQYLNVSNNSLASSIP---AQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 220 ~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 275 (766)
+|++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776431 1556667777777777777765444 35666777777777776665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-19 Score=209.03 Aligned_cols=227 Identities=16% Similarity=0.140 Sum_probs=103.5
Q ss_pred cCCCCCEEecCCC-CCCCC-CchhhhhCCCCCCEEEccCCCCCccCCccc----CCCCCCcEEEeecCc--CCCC-CCcc
Q 004248 115 NLTHLASFNASRF-LLPGS-IPDWLGQQLPTLQALDLRSCSISGVIPFSL----GNLTNLTSLYLSDNG--LTGT-IPSS 185 (766)
Q Consensus 115 ~l~~L~~L~ls~n-~l~g~-ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l----~~l~~L~~L~Ls~N~--l~~~-~p~~ 185 (766)
++++|+.|++++| .+... ++. +...+++|++|+|++|.+++..+..+ ..+++|++|+|++|. ++.. ++..
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 4555666666555 22221 222 22225566666666665544332222 244556666666554 1100 1111
Q ss_pred ccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCc--------------------------CCC----CCCCCCC
Q 004248 186 LGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY--------------------------LTG----SIPPGLG 235 (766)
Q Consensus 186 l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~--------------------------l~~----~~p~~l~ 235 (766)
+.++++|++|+|++|...+.+|..+..+++|+.|+++.+. +.. .+|..+.
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 2234556666665552111234444444444444433221 111 1222222
Q ss_pred CCCCccEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCc-cCCcccCCCCCCCEEEcc---------CccCccccCC
Q 004248 236 TLSKLQYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSG-SVPSELRGLRSLQKFVIG---------NNFLSGNLSV 304 (766)
Q Consensus 236 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g-~~p~~l~~l~~L~~L~ls---------~N~l~g~~~~ 304 (766)
.+++|++|+|++|.+++... ..+.++++|++|++++| +.. .++.....+++|++|+++ .|.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 45778888888887654322 22456777777777776 322 122222345666666662 2333321111
Q ss_pred CccCCCCcccEEEccCCCCCCCCCcccC-CCCCCCEEEcc
Q 004248 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLW-SMPQLRLLDIS 343 (766)
Q Consensus 305 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls 343 (766)
.+...+++|+.|+++.|++++..+..+. .+++|+.|+++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 1112244555555555555443333332 35555555555
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-17 Score=176.61 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=99.1
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc---------------CHHHH--------HHHHHHHhhcCCCCc
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---------------KTEAY--------LLELDFFSKVSHARL 591 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~---------------~~~~~--------~~E~~~l~~l~H~ni 591 (766)
-|+..+.||+|+||.||+|...+|+.||||.++.... ..... .+|...|.++.+..+
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4888999999999999999988999999998753211 01122 346666666654443
Q ss_pred ccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCe
Q 004248 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSI 671 (766)
Q Consensus 592 v~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NI 671 (766)
....-+... ..++||||++|++|.++... +....++.|++.+|.|||+. +||||||||.||
T Consensus 176 ~vp~p~~~~---~~~LVME~i~G~~L~~l~~~-------------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NI 236 (397)
T 4gyi_A 176 PVPEPIAQS---RHTIVMSLVDALPMRQVSSV-------------PDPASLYADLIALILRLAKH---GLIHGDFNEFNI 236 (397)
T ss_dssp SCCCEEEEE---TTEEEEECCSCEEGGGCCCC-------------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSE
T ss_pred CCCeeeecc---CceEEEEecCCccHhhhccc-------------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHE
Confidence 222111111 24799999999888665421 12346789999999999997 999999999999
Q ss_pred eeCCCCc----------EEeccchhhhh
Q 004248 672 LLDDKFE----------VRLGSLSEVCA 689 (766)
Q Consensus 672 Ll~~~~~----------~kl~DFG~a~~ 689 (766)
|+++++. +.|+||+-+..
T Consensus 237 Ll~~dgd~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 237 LIREEKDAEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp EEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred EEeCCCCcccccccccceEEEEeCCccc
Confidence 9998773 88999996643
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-19 Score=203.80 Aligned_cols=287 Identities=16% Similarity=0.163 Sum_probs=195.3
Q ss_pred hccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCC-CCCcc-CCcccCCCCCCcEEEeecCcCCCCCCcccc---
Q 004248 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSC-SISGV-IPFSLGNLTNLTSLYLSDNGLTGTIPSSLG--- 187 (766)
Q Consensus 113 l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N-~l~g~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--- 187 (766)
...+++|+.|++++|.+++..+..+...+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3578899999999999888777777645899999999999 55432 444556899999999999998765554443
Q ss_pred -CCCCCCEEEccCCC--CCC-CCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCC--------------
Q 004248 188 -QLSVLSVLDLSRNS--LTG-NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNS-------------- 249 (766)
Q Consensus 188 -~L~~L~~L~Ls~N~--l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------------- 249 (766)
.+++|++|++++|. ++. .++..+.++++|+.|+|++|...+.+|..+..+++|+.|+++.+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 67799999999987 221 111223457999999999983222366667777888888765542
Q ss_pred ------------CCC----CCccccCCCCCCCEEEccCCcCCccC-CcccCCCCCCCEEEccCccCccccCCCccCCCCc
Q 004248 250 ------------LAS----SIPAQLGDLDSLVDLDLSMNSLSGSV-PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQ 312 (766)
Q Consensus 250 ------------l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~ 312 (766)
+.. .+|..+..+++|++|+|++|.+++.. +..+.++++|+.|++++| ++......+...+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111 13333346789999999999987543 334678999999999988 442222222335788
Q ss_pred ccEEEcc---------CCCCCCCCCccc-CCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEcc--C----CcCccC-
Q 004248 313 LQIIVLR---------QNGFTGPPPDVL-WSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNIS--Q----NMFYGG- 375 (766)
Q Consensus 313 L~~L~L~---------~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls--~----N~l~g~- 375 (766)
|+.|+++ .|.+++.....+ ..+++|+.|+++.|++++..+......+++|+.|+++ + |.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 9999983 355554333333 3489999999999999865443333346788999998 3 444421
Q ss_pred ----C---CcCCCCCCEEeccCCcCccccChhh
Q 004248 376 ----L---TPVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 376 ----~---~~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
+ ...+++|+.|+|++ .+++..+..+
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 1 12356777888866 5655444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=152.46 Aligned_cols=132 Identities=24% Similarity=0.217 Sum_probs=83.8
Q ss_pred CCCCEEEccCCCCC-CCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q 004248 190 SVLSVLDLSRNSLT-GNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLD 268 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 268 (766)
++|++|++++|+++ +.+|..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 56666666677777777777776644 5566666666666666666665666555566666666
Q ss_pred ccCCcCCccC-CcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCC---cccCCCCCCCEEEccC
Q 004248 269 LSMNSLSGSV-PSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP---DVLWSMPQLRLLDISR 344 (766)
Q Consensus 269 Ls~N~l~g~~-p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 344 (766)
+++|++++.. +..+.. +++|+.|++++|.+++.++ ..+..+++|++|++++
T Consensus 102 Ls~N~l~~~~~~~~l~~-------------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKK-------------------------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSCCSSGGGGGGSS-------------------------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCccCcchhHHHHhc-------------------------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 6666665421 134444 4455555555555555444 4667777777777777
Q ss_pred CCCC
Q 004248 345 NNFT 348 (766)
Q Consensus 345 N~l~ 348 (766)
|.+.
T Consensus 157 n~~~ 160 (168)
T 2ell_A 157 REDQ 160 (168)
T ss_dssp TTSC
T ss_pred CChh
Confidence 7766
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-17 Score=153.85 Aligned_cols=128 Identities=23% Similarity=0.234 Sum_probs=78.7
Q ss_pred CCCCCEEEccCCCCC-ccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEE
Q 004248 141 LPTLQALDLRSCSIS-GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~-g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 219 (766)
.++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+.++++|++|+|++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 345677777777776 56666666677777777777766654 556666666666666666666566666566666666
Q ss_pred eccCCcCCCC-CCCCCCCCCCccEEEccCCCCCCCCc---cccCCCCCCCEEEcc
Q 004248 220 DISSNYLTGS-IPPGLGTLSKLQYLNVSNNSLASSIP---AQLGDLDSLVDLDLS 270 (766)
Q Consensus 220 ~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls 270 (766)
++++|.+++. .|..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666542 22455555666666666665554433 345555555555554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-16 Score=151.48 Aligned_cols=127 Identities=26% Similarity=0.396 Sum_probs=63.7
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
+++++++|.++ .+|..+. ++|++|+|++|+++ .+|..|.++++|++|+|++|++++..|..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 2333322 34555555555554 44455555555555555555555544445555555555555555
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555444444555555555555555554433334444455555555554443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=147.75 Aligned_cols=130 Identities=24% Similarity=0.259 Sum_probs=64.5
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
+.+++++|+++. +|..+ .++|++|+|++|++++..+..+.++++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345555555542 22222 234555555555555444444455555555555555555444444455555555555555
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCcc
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGS 277 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 277 (766)
.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55544444445555555555555555543333344455555555555555443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=146.72 Aligned_cols=132 Identities=27% Similarity=0.297 Sum_probs=98.4
Q ss_pred CcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccC
Q 004248 168 LTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247 (766)
Q Consensus 168 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 247 (766)
.+.+++++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888877 4565443 6788888888888876666778888888888888888866666677888888888888
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcccc
Q 004248 248 NSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNL 302 (766)
Q Consensus 248 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~ 302 (766)
|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8888766666777888888888888887655555677777777777777766543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-17 Score=151.73 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=76.5
Q ss_pred CCCcEEEeecCcCC-CCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEE
Q 004248 166 TNLTSLYLSDNGLT-GTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLN 244 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 244 (766)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666666 56666666666666666666666654 5566666666666666666655555555566666666
Q ss_pred ccCCCCCCC-CccccCCCCCCCEEEccCCcCCccCC---cccCCCCCCCEEEcc
Q 004248 245 VSNNSLASS-IPAQLGDLDSLVDLDLSMNSLSGSVP---SELRGLRSLQKFVIG 294 (766)
Q Consensus 245 Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p---~~l~~l~~L~~L~ls 294 (766)
+++|.+++. .|..++.+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23555566666666666666655443 345555555555543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=150.05 Aligned_cols=128 Identities=27% Similarity=0.342 Sum_probs=105.6
Q ss_pred cEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCC
Q 004248 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248 (766)
Q Consensus 169 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 248 (766)
+++++++|.++ .+|..+. ++|++|+|++|+++ .+|..|.++++|+.|+|++|.+++..|..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 5776654 57889999999887 67788888899999999999988777778888888888888888
Q ss_pred CCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 249 SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 249 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8888877788888888888888888886666677788888888888887753
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-15 Score=161.99 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=123.5
Q ss_pred CCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCC--ccCCcccCCCCCCcEEEeecCcCCCCCCccccC-----
Q 004248 116 LTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSIS--GVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQ----- 188 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~--g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~----- 188 (766)
+.+++.|.++++- .+.--..+...+++|++|||++|.+. ...+.. ++.++.+.+..|.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccccC---HHHhccccccc
Confidence 4566777776431 11001123333788999999999987 222222 222344444444321 233444
Q ss_pred ---CCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCC----CCCCccccC--
Q 004248 189 ---LSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL----ASSIPAQLG-- 259 (766)
Q Consensus 189 ---L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l----~~~~p~~l~-- 259 (766)
+++|+.|+|.+ +++..-+..|.+|++|+.|++++|.++...+..|..+.++..+.+..+.. ...-+..|.
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 66666666666 56555555666666677777766666544555566665555555443110 000011111
Q ss_pred ------------------------------------------------CCCCCCEEEccCCcCCccCCcccCCCCCCCEE
Q 004248 260 ------------------------------------------------DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291 (766)
Q Consensus 260 ------------------------------------------------~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L 291 (766)
.+++|+.|+|++|+++...+..|.++++|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 14556666666655554444555566666666
Q ss_pred EccCccCccccCCCccCCCCccc-EEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcE
Q 004248 292 VIGNNFLSGNLSVNLFPTVSQLQ-IIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVE 364 (766)
Q Consensus 292 ~ls~N~l~g~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~ 364 (766)
++.+| +. .++...|.++.+|+ .+++.+ +++...+..|.++++|+.|++++|+++ .++...+..+.+|+.
T Consensus 256 ~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 256 KLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKL 325 (329)
T ss_dssp ECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCE
T ss_pred ECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhh
Confidence 66555 32 35555555555565 566555 555555555666666666666555555 333333333344443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-15 Score=157.40 Aligned_cols=220 Identities=10% Similarity=0.133 Sum_probs=154.8
Q ss_pred hhcc-CCCCCEEecCCCCCC--CCCchhhhhCCCCCCEEEccCCCCCccCCcccCC--------CCCCcEEEeecCcCCC
Q 004248 112 ALVN-LTHLASFNASRFLLP--GSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGN--------LTNLTSLYLSDNGLTG 180 (766)
Q Consensus 112 ~l~~-l~~L~~L~ls~n~l~--g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~--------l~~L~~L~Ls~N~l~~ 180 (766)
.+.. +++|+.|||++|.+. ...+. .++.++.+++..|.+ .+..|.+ +++|+.|+|.+ .++.
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~~----~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~ 114 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKAG----TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKN 114 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESSS----SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCE
T ss_pred HHHHhhccCeEEecCcceeEEecCccc----ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccc
Confidence 3444 889999999999876 11110 022233444444422 1233444 67777777766 6664
Q ss_pred CCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcC----CC----------------------CCCC--
Q 004248 181 TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL----TG----------------------SIPP-- 232 (766)
Q Consensus 181 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~----------------------~~p~-- 232 (766)
.-+..|.++++|+.|++++|.++...+..|.++.++..+.+..+.. .. .++.
T Consensus 115 I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~ 194 (329)
T 3sb4_A 115 IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEI 194 (329)
T ss_dssp ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHH
Confidence 4455666777777777777766655556666666666665544211 00 0000
Q ss_pred --------CC------------------CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCC
Q 004248 233 --------GL------------------GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLR 286 (766)
Q Consensus 233 --------~l------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 286 (766)
.+ ..+++|+.|+|++|+++...+..|.++++|++|+|.+| +...-+..|.+++
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 00 02789999999999998777778999999999999998 7777778899999
Q ss_pred CCC-EEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEc
Q 004248 287 SLQ-KFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342 (766)
Q Consensus 287 ~L~-~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 342 (766)
+|+ .+++.+ .++ .++...|.++++|+.++++.|+++...+..|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999 999998 554 678888999999999999999999999999999999999874
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-17 Score=166.08 Aligned_cols=114 Identities=32% Similarity=0.382 Sum_probs=51.9
Q ss_pred ccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCc
Q 004248 161 SLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKL 240 (766)
Q Consensus 161 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 240 (766)
.++++++|++|+|++|.+++ +| .+.++++|++|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34444444444444444443 33 3444444444444444444 234444444444444444444443 22 34444455
Q ss_pred cEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCccCC
Q 004248 241 QYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSGSVP 279 (766)
Q Consensus 241 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p 279 (766)
++|++++|++++..+ ..+..+++|++|++++|.+++.+|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 555555555543211 245555555555555555554443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-17 Score=164.94 Aligned_cols=156 Identities=26% Similarity=0.276 Sum_probs=131.6
Q ss_pred hhccCCCCCEEecCCCCCCCCCch------hhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCcc
Q 004248 112 ALVNLTHLASFNASRFLLPGSIPD------WLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSS 185 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~g~ip~------~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 185 (766)
.+.....++.++++.+.+.|.+|. .+.. +++|++|+|++|.+++ +| .+.++++|++|+|++|.++ .+|..
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch
Confidence 355667788888888888888886 7766 9999999999999997 67 8999999999999999998 68888
Q ss_pred ccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCC-CCCCCCCCccEEEccCCCCCCCCccc-------
Q 004248 186 LGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP-PGLGTLSKLQYLNVSNNSLASSIPAQ------- 257 (766)
Q Consensus 186 l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~------- 257 (766)
+..+++|++|+|++|++++ +| .+..+++|+.|+|++|.+++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 8888999999999999986 55 68899999999999999985322 46889999999999999998776653
Q ss_pred ---cCCCCCCCEEEccCCcCC
Q 004248 258 ---LGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 258 ---l~~l~~L~~L~Ls~N~l~ 275 (766)
+..+++|+.|| +|.++
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHhCCCcEEEC--CcccC
Confidence 66777888776 55544
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-15 Score=143.37 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=26.0
Q ss_pred CCCCCccEEEccCCCCCCCCcc--ccCCCCCCCEEEccCCcCCccCCcc----cCCCCCCCEEEccCccC
Q 004248 235 GTLSKLQYLNVSNNSLASSIPA--QLGDLDSLVDLDLSMNSLSGSVPSE----LRGLRSLQKFVIGNNFL 298 (766)
Q Consensus 235 ~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~~p~~----l~~l~~L~~L~ls~N~l 298 (766)
..+++|++|+|++|+++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.|+++.|.+
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 33444444444444442 2232 3444444444444444443 22322 44444455555544443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-15 Score=142.93 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=91.0
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCC-CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEE
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLT-NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 219 (766)
+++|+.|+|++|.++. +|. +..+. +|++|+|++|.+++. ..+..+++|++|+|++|++++..|..|..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 6677888888887774 343 44443 788888888877754 567777778888888888775444445777788888
Q ss_pred eccCCcCCCCCCC--CCCCCCCccEEEccCCCCCCCCccc----cCCCCCCCEEEccCCcCC
Q 004248 220 DISSNYLTGSIPP--GLGTLSKLQYLNVSNNSLASSIPAQ----LGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 220 ~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 275 (766)
+|++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.||++.|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888775 4555 6777777888888888776 34543 677777888887777654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=132.29 Aligned_cols=86 Identities=29% Similarity=0.317 Sum_probs=38.6
Q ss_pred CCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q 004248 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDL 269 (766)
Q Consensus 190 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 269 (766)
++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444444444444444444333333444444444444444444433333444444444444
Q ss_pred cCCcCC
Q 004248 270 SMNSLS 275 (766)
Q Consensus 270 s~N~l~ 275 (766)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=131.89 Aligned_cols=107 Identities=27% Similarity=0.341 Sum_probs=78.7
Q ss_pred CCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccC
Q 004248 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISS 223 (766)
Q Consensus 144 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 223 (766)
.+.|++++|.++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777777764 454442 6777777777777776677777777888888888888766666677788888888888
Q ss_pred CcCCCCCCCCCCCCCCccEEEccCCCCCCC
Q 004248 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASS 253 (766)
Q Consensus 224 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 253 (766)
|++++..+..|..+++|++|+|++|.++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888766556677888888888888877654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=144.33 Aligned_cols=262 Identities=11% Similarity=0.077 Sum_probs=161.7
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
..+..+.+..+ + ..|+...+.+. +|+.++|..| ++.+-..+|.+. +|+.+.|.. .++..-+..|.++++|+.++
T Consensus 113 ~~l~~i~ip~~-i-~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-V-KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-C-CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-c-CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44555554432 1 23333333333 6777777665 555555666663 577777774 55545556777777777777
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCc
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 276 (766)
|+.|+++......|. ..+|+.+.|..+ ++..-...|.++++|+.+++..| ++..-...|.+ .+|+.+.+. |.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 777777754444554 577777777644 55444556777777777777754 44333445555 677777773 44555
Q ss_pred cCCcccCCCCCCCEEEccCccCc----cccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCC
Q 004248 277 SVPSELRGLRSLQKFVIGNNFLS----GNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLP 352 (766)
Q Consensus 277 ~~p~~l~~l~~L~~L~ls~N~l~----g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 352 (766)
.-+..|.++++|+.+++.+|.+. ..++...|..+++|+.++|. |.++......|.++++|+.++|..| ++ .++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEc
Confidence 55667777777777777776654 13666677777778888777 4466666777777788888888554 44 444
Q ss_pred cccccCCCCCcEEEccCCcCccCCC---cCC-CCCCEEeccCCcC
Q 004248 353 NSRSNVNTSTVELNISQNMFYGGLT---PVL-GRFRLVDLSGNYF 393 (766)
Q Consensus 353 ~~~~~~~~~l~~L~ls~N~l~g~~~---~~l-~~l~~ldLs~N~l 393 (766)
...+..+ +|+.+++++|....-.. ..+ ..++.|.+..|.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4445555 77778877775532111 122 2456666655543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=130.66 Aligned_cols=103 Identities=26% Similarity=0.288 Sum_probs=46.9
Q ss_pred EEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCC
Q 004248 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNS 249 (766)
Q Consensus 170 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 249 (766)
.+++++|+++ .+|..+. ++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3444444443 3333332 344444444444444444444444444445554444443333334444455555555555
Q ss_pred CCCCCccccCCCCCCCEEEccCCcCC
Q 004248 250 LASSIPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 250 l~~~~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
|++..+..|..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 54433333444555555555555444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=129.95 Aligned_cols=105 Identities=23% Similarity=0.326 Sum_probs=68.2
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 3444443 56666666666666666666666777777777777776654555667777777777777
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLAS 252 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 252 (766)
++++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7775444456777777777777777654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-12 Score=137.29 Aligned_cols=240 Identities=15% Similarity=0.154 Sum_probs=145.5
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+..++.+.+.+ .++.+-+..|.+. +|+.+.|..| ++..-...|.+ .+|+.+.+.. .++..-+..|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45566666654 3444455566664 6777777655 55444455655 3577777764 55555556677777777777
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
|++|.++. +|......++|+.+.|..+ ++..-...|.++++|+.+++..| ++..-...|.+ .+|+.+.+.++ ++
T Consensus 187 l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 187 LSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp CTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC-
T ss_pred cCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc-
Confidence 77777763 3333333577777777633 55444556677777777777654 44444455655 56777777433 33
Q ss_pred ccCCCccCCCCcccEEEccCCCCC-----CCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCc--Cc
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFT-----GPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM--FY 373 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~--l~ 373 (766)
.++...|..+++|+.+++.+|.+. ...+..|.++++|+.++|.+ +++ .++...+..+.+|+.+++.+|- +.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPANVTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTTCCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECccccEEc
Confidence 456666777777777777766654 34456677777777777773 354 4555555666677777776551 11
Q ss_pred cCCCcCCCCCCEEeccCCcCc
Q 004248 374 GGLTPVLGRFRLVDLSGNYFE 394 (766)
Q Consensus 374 g~~~~~l~~l~~ldLs~N~l~ 394 (766)
....... +|+.+++++|.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCC
T ss_pred HHhCCCC-CCCEEEEcCCCCc
Confidence 2223344 6777777777554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.3e-12 Score=135.07 Aligned_cols=101 Identities=29% Similarity=0.299 Sum_probs=47.7
Q ss_pred EEccCC-CCCccCCcccCCCCCCcEEEeec-CcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 147 LDLRSC-SISGVIPFSLGNLTNLTSLYLSD-NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 147 L~Ls~N-~l~g~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
++++++ ++++ +|. +..+++|++|+|++ |+|++..|..|.+|++|++|+|++|+|++..|..|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4443 344 55555555555553 5555444444555555555555555555544445555555555555555
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSL 250 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l 250 (766)
+|++..+..+..++ |+.|+|.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55433222232222 44444444444
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.4e-12 Score=128.96 Aligned_cols=146 Identities=16% Similarity=0.033 Sum_probs=112.0
Q ss_pred HHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccc-cCHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEE
Q 004248 529 LLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQS-VKTEAYLLELDFFSKVS-HARLVPLLGHCMERENEKF 606 (766)
Q Consensus 529 l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~-~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~ 606 (766)
+....+.|......+.|+.+.||++... ++.+++|...... .....+.+|+++++.+. |..+.++++++.. .+..|
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-~~~~~ 86 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-DGWSN 86 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-TTEEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec-CCceE
Confidence 4455677888888898999999999754 6789999986532 22446899999999985 6677788887655 56789
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccC------------------------------
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE------------------------------ 656 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------------------------------ 656 (766)
+||||++|.+|.+.+.. ..+...++.+++++|+.||+.
T Consensus 87 lv~e~i~G~~l~~~~~~------------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (263)
T 3tm0_A 87 LLMSEADGVLCSEEYED------------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVD 154 (263)
T ss_dssp EEEECCSSEEHHHHCCT------------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCS
T ss_pred EEEEecCCeehhhccCC------------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccc
Confidence 99999999998876421 112346788999999999971
Q ss_pred --------------------------CCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 657 --------------------------CTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 657 --------------------------~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
..+.++|+|++|.||+++++..+.|.||+.+.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 155 CENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp GGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01358999999999999876667799999764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-12 Score=137.52 Aligned_cols=103 Identities=25% Similarity=0.204 Sum_probs=67.3
Q ss_pred EEEeecC-cCCCCCCccccCCCCCCEEEccC-CCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccC
Q 004248 170 SLYLSDN-GLTGTIPSSLGQLSVLSVLDLSR-NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247 (766)
Q Consensus 170 ~L~Ls~N-~l~~~~p~~l~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 247 (766)
.++++++ +++ .+|. +..+++|++|+|++ |+|++..|..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 3666 77777777777774 777666666677777777777777777766666666677777777777
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCcCC
Q 004248 248 NSLASSIPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 248 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
|+|++..|..+..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 776654444444444 666666666655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-14 Score=151.19 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCCCEEEccCCCCCccCCcccC-----CCCCCcEEEeecCcCCCCCCccc-cCCCCCCEEEccCCCCCCCCCccc----
Q 004248 141 LPTLQALDLRSCSISGVIPFSLG-----NLTNLTSLYLSDNGLTGTIPSSL-GQLSVLSVLDLSRNSLTGNIPTSF---- 210 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~-----~l~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~~L~Ls~N~l~~~~p~~~---- 210 (766)
+++|+.|+|++|.++......+. +.++|++|+|++|.++......+ ..+++|+.|+|++|+++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45666777777766543322222 22566666666666653222222 234456666666666653322222
Q ss_pred -CCCCCCCEEeccCCcCCC----CCCCCCCCCCCccEEEccCCCCCCC----CccccCCCCCCCEEEccCCcCC
Q 004248 211 -GLLKNLSSLDISSNYLTG----SIPPGLGTLSKLQYLNVSNNSLASS----IPAQLGDLDSLVDLDLSMNSLS 275 (766)
Q Consensus 211 -~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 275 (766)
...++|+.|+|++|.++. .++..+..+++|++|+|++|.++.. ++..+...++|++|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 234555566666555542 1222233445555555555554321 1233344445555555555554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-14 Score=151.39 Aligned_cols=167 Identities=22% Similarity=0.192 Sum_probs=122.5
Q ss_pred CCCCCEEecCCCCCCCCCchhhhh----CCCCCCEEEccCCCCCccCCccc-CCCCCCcEEEeecCcCCCCCCccc----
Q 004248 116 LTHLASFNASRFLLPGSIPDWLGQ----QLPTLQALDLRSCSISGVIPFSL-GNLTNLTSLYLSDNGLTGTIPSSL---- 186 (766)
Q Consensus 116 l~~L~~L~ls~n~l~g~ip~~~~~----~l~~L~~L~Ls~N~l~g~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l---- 186 (766)
+++|+.|++++|.++..-...+.. ..++|++|||++|.++..-...+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999986543333322 23689999999999975433333 346789999999999975433333
Q ss_pred -cCCCCCCEEEccCCCCCC----CCCcccCCCCCCCEEeccCCcCCCC----CCCCCCCCCCccEEEccCCCCCCC----
Q 004248 187 -GQLSVLSVLDLSRNSLTG----NIPTSFGLLKNLSSLDISSNYLTGS----IPPGLGTLSKLQYLNVSNNSLASS---- 253 (766)
Q Consensus 187 -~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 253 (766)
...++|++|+|++|.++. .++..+..+++|++|+|++|.++.. ++..+...++|++|+|++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 356789999999999864 2445557789999999999998742 345567778999999999999753
Q ss_pred CccccCCCCCCCEEEccCCcCCccCCccc
Q 004248 254 IPAQLGDLDSLVDLDLSMNSLSGSVPSEL 282 (766)
Q Consensus 254 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l 282 (766)
++..+...++|++|+|++|.++..-...+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 33445567889999999999876444333
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=123.00 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=97.0
Q ss_pred CCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCc-c-cceeEEEecCCcEEEEEeeC
Q 004248 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL-V-PLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~ni-v-~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++....+.+.|..+.||++...+|..+++|..... ....+.+|+++++.+++.++ | +++++... ++..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~-~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG--ALNELQDEAARLSWLATTGVPCAAVLDVVTE-AGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-SSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCCCCCCeEEEeccC-CCCCEEEEEec
Confidence 34433333456679999998777888999987543 23467899999999965554 4 47775543 45689999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC-----------------------------------
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC----------------------------------- 657 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~----------------------------------- 657 (766)
+|.+|. ... .+ ...++.++++.|+.||+..
T Consensus 98 ~G~~l~--~~~----------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (264)
T 1nd4_A 98 PGQDLL--SSH----------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEH 162 (264)
T ss_dssp SSEETT--TSC----------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGG
T ss_pred CCcccC--cCc----------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhc
Confidence 998884 211 11 2256677777777777631
Q ss_pred --------------------CCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 658 --------------------TLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 658 --------------------~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
.+.++|+|++|.||+++++..++|.|||.+.
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 163 QGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp TTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred cCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1239999999999999887667899999874
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=121.18 Aligned_cols=142 Identities=12% Similarity=0.169 Sum_probs=105.4
Q ss_pred ccceeecCCcceEEEEEEcCCcEEEEEEee--cccc--CHHHHHHHHHHHhhcC--CCCcccceeEEEecC--CcEEEEE
Q 004248 538 DANLIKNGHSGDLFRGILEGGIPVVIKRID--LQSV--KTEAYLLELDFFSKVS--HARLVPLLGHCMERE--NEKFLVY 609 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~--~~~~--~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~--~~~~lV~ 609 (766)
..+.++.|.++.||+....+ ..+++|+.. .... ....+.+|+++++.++ +..+.++++++.+.. +..|+||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 46789999999999988665 578888875 3321 2456889999999997 455778887665421 3479999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC--------------------------------
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC-------------------------------- 657 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-------------------------------- 657 (766)
||++|..+.+... ..++..++..++.++++.|+.||+..
T Consensus 121 e~v~G~~l~~~~~---------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (359)
T 3dxp_A 121 EFVSGRVLWDQSL---------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSET 191 (359)
T ss_dssp ECCCCBCCCCTTC---------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCC
T ss_pred EecCCeecCCCcc---------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCC
Confidence 9999877754211 23778889999999999999999721
Q ss_pred -----------------------CCCeEecCCCCCCeeeCCCCc--EEeccchhhhh
Q 004248 658 -----------------------TLPFVHRDVQASSILLDDKFE--VRLGSLSEVCA 689 (766)
Q Consensus 658 -----------------------~~~iiHrDlKp~NILl~~~~~--~kl~DFG~a~~ 689 (766)
.+.++|+|++|.||+++.++. ++|.||+.+..
T Consensus 192 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 192 ESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp SCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred cCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 246999999999999997753 68999998864
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=112.06 Aligned_cols=248 Identities=13% Similarity=0.070 Sum_probs=114.3
Q ss_pred hhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCc--------------
Q 004248 112 ALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG-------------- 177 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~-------------- 177 (766)
++.++++|+.+.+..+ + ..|++.-+.++++|+.++|.++ ++..-...|.++++|+.+.+..+-
T Consensus 66 AF~~c~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-V-REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-c-cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 4556666666666533 2 2344443444667777777544 443344456666666555544321
Q ss_pred -------CCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCC
Q 004248 178 -------LTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL 250 (766)
Q Consensus 178 -------l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 250 (766)
....-...|.++++|+.+.+..+. ...-...|.++++|+.+++..| ++..-...+.++..|+.+.+..+..
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 000112345556666666665443 2233445666666666666554 2222233445555555554443322
Q ss_pred CCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCc-------------------cccCCCccCCCC
Q 004248 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS-------------------GNLSVNLFPTVS 311 (766)
Q Consensus 251 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~-------------------g~~~~~~~~~l~ 311 (766)
. +........+|+.+.+..+ ++..-...+.++..|+.+.+..+... ..++...|..+.
T Consensus 221 ~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 221 Y--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp E--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCT
T ss_pred E--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccc
Confidence 1 1111222234444444322 11122233444445555554443321 012333445555
Q ss_pred cccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCC
Q 004248 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370 (766)
Q Consensus 312 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N 370 (766)
+|+.+.+..+ ++.....+|.++.+|+.++|.++ ++ .|+...+..+.+|+.+++..|
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 5555555433 44444445555556666655432 33 344344444455555555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-10 Score=120.17 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=60.4
Q ss_pred cCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccC--CCCCCCEEeccC--CcCCCC-----CCC
Q 004248 162 LGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG--LLKNLSSLDISS--NYLTGS-----IPP 232 (766)
Q Consensus 162 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~-----~p~ 232 (766)
+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.++......+. .+++|+.|+|+. |...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344555555555554211 1222 22 55566666655554322212222 456666666542 111111 000
Q ss_pred CC--CCCCCccEEEccCCCCCCCCcccc---CCCCCCCEEEccCCcCCcc----CCcccCCCCCCCEEEccCccCc
Q 004248 233 GL--GTLSKLQYLNVSNNSLASSIPAQL---GDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 233 ~l--~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
.+ ..+++|++|+|++|.+....+..+ ..+++|++|+|+.|.+.+. ++..+.++++|+.|++++|.++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11 235566666666666543222211 2345666666666666542 2222334455555555555543
|
| >3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.5e-10 Score=116.19 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=119.0
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCc--ccceeEEEecC--CcEEEEEeeCC
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARL--VPLLGHCMERE--NEKFLVYKYMP 613 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~ni--v~l~~~~~~~~--~~~~lV~Ey~~ 613 (766)
.+.++.|....||+.. ..+++|.-... .....+.+|.++|+.+. +..+ .+.+......+ ...|+||||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~ 99 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIK 99 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccC
Confidence 4678999999999853 56889986432 22467899999999884 3332 23333221111 13489999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccC-------------------------------------
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE------------------------------------- 656 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------------------------------------- 656 (766)
|.+|.+.... .++..++..++.++++.++.||+.
T Consensus 100 G~~l~~~~~~---------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (304)
T 3sg8_A 100 GVPLTPLLLN---------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQM 170 (304)
T ss_dssp CEECCHHHHH---------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred CeECCccccc---------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccH
Confidence 9888653321 266677777777888777777751
Q ss_pred ------------------CCCCeEecCCCCCCeeeCC--CCcEEeccchhhhhcCCCCccceeeecc---cCCCCCCC--
Q 004248 657 ------------------CTLPFVHRDVQASSILLDD--KFEVRLGSLSEVCAQGGDAHQSRITRLL---RLPQSSEQ-- 711 (766)
Q Consensus 657 ------------------~~~~iiHrDlKp~NILl~~--~~~~kl~DFG~a~~~~~~~~~~~~t~~y---~aPe~~~~-- 711 (766)
..+.++|+|++|.||++++ ...+.|.||+.+..-+. .........+ ..|+....
T Consensus 171 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~l 249 (304)
T 3sg8_A 171 KKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDP-DNDFISLMEDDEEYGMEFVSKIL 249 (304)
T ss_dssp HHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECT-THHHHTTCCTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCCh-HHHHHHHHhhccccCHHHHHHHH
Confidence 1245899999999999998 45688999998764321 1000000000 01110000
Q ss_pred Cceee---eeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 712 GSSGM---VIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 712 ~~~g~---~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
..||. ..+..+.....+.|++|++++++.+|+.||
T Consensus 250 ~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 250 NHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 00111 000111233358899999999999999887
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-09 Score=118.31 Aligned_cols=190 Identities=15% Similarity=0.194 Sum_probs=82.8
Q ss_pred CCCCCEEEccCCCCCc-cC-------CcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCC
Q 004248 141 LPTLQALDLRSCSISG-VI-------PFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGL 212 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g-~~-------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~ 212 (766)
...++.|.+....+.| .. ..++..+++|+.|.+.++..... +++... .+.++..+..
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~--------------~is~~~-~~~L~~ll~~ 170 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ--------------EISWIE-QVDLSPVLDA 170 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC--------------CGGGCB-CCBCHHHHHT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc--------------cccccc-ccCHHHHHhc
Confidence 4457788887666543 11 22345667888887765432100 000000 0112222333
Q ss_pred CCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccC--CCCCCCEEEccC--CcCCcc-----CCccc-
Q 004248 213 LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG--DLDSLVDLDLSM--NSLSGS-----VPSEL- 282 (766)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~g~-----~p~~l- 282 (766)
+++|+.|+|++|.-. .++. + .+++|+.|+|..|.++......+. .+++|++|+|+. |...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 444444444444200 1222 2 245555555555544322111222 455555555532 111111 00111
Q ss_pred -CCCCCCCEEEccCccCccccCCCcc--CCCCcccEEEccCCCCCCC----CCcccCCCCCCCEEEccCCCCC
Q 004248 283 -RGLRSLQKFVIGNNFLSGNLSVNLF--PTVSQLQIIVLRQNGFTGP----PPDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 283 -~~l~~L~~L~ls~N~l~g~~~~~~~--~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
..+++|++|+|.+|.+.+.....++ +.+++|+.|+|+.|.++.. ++..+..+++|+.|+|++|.++
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2355666666666655432211111 2345566666666665542 2222234566666666666554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=103.92 Aligned_cols=246 Identities=12% Similarity=0.054 Sum_probs=152.5
Q ss_pred hhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCC---------------------CCCccCCcccCCCCCCc
Q 004248 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSC---------------------SISGVIPFSLGNLTNLT 169 (766)
Q Consensus 111 ~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N---------------------~l~g~~p~~l~~l~~L~ 169 (766)
.++.++++|+.+++..+ + -.|+...+..+++|+.+.+..+ .....-...|.++++|+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~ 165 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-V-KMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLE 165 (394)
T ss_dssp TTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCC
T ss_pred hHhhCCCCCcEEEeCCC-c-eEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCc
Confidence 46778888888888654 2 2344433344555555554332 11112234577888899
Q ss_pred EEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCC---------------------C
Q 004248 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT---------------------G 228 (766)
Q Consensus 170 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~---------------------~ 228 (766)
.+.+.++. ...-...|.++.+|+.+++..| ++..-...|.++..|+.+.+..+... .
T Consensus 166 ~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~ 243 (394)
T 4fs7_A 166 YVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTE 243 (394)
T ss_dssp EEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCE
T ss_pred EEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCcee
Confidence 99887654 3244566788888888888766 44444556777777777766554321 0
Q ss_pred CCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccC
Q 004248 229 SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308 (766)
Q Consensus 229 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~ 308 (766)
.-...+..+.+|+.+.+..+... .....|.++..|+.+....+.+ ....|..+.+|+.+.+.++ ++ .++...|.
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~ 317 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFE 317 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTT
T ss_pred cccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhc
Confidence 01122334445555555444321 2233445555555555544432 2245778888999988765 33 57777889
Q ss_pred CCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccC
Q 004248 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQ 369 (766)
Q Consensus 309 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~ 369 (766)
++.+|+.++|.++ ++.....+|.++.+|+.+++..| ++ .++...+..+.+|+.+++..
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 9999999999754 77777788999999999999876 54 45555555566666666544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-07 Score=101.36 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=56.8
Q ss_pred ccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCC
Q 004248 281 ELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNT 360 (766)
Q Consensus 281 ~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~ 360 (766)
.|.++.+|+.+.+.++.. .+....|.+++.|+.+.+. +.++......|.++.+|+.++|..+ ++ .|....+..+.
T Consensus 260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred eeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCC
Confidence 455566666666655433 2444555566666666664 3444445555666666666666543 33 34444445556
Q ss_pred CCcEEEccCCc--CccCCCcCCCCCCEEeccCCc
Q 004248 361 STVELNISQNM--FYGGLTPVLGRFRLVDLSGNY 392 (766)
Q Consensus 361 ~l~~L~ls~N~--l~g~~~~~l~~l~~ldLs~N~ 392 (766)
+|+.+.+..+- +....+....+|+.+++.+|.
T Consensus 335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 66666665431 111222345566666666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.6e-11 Score=121.10 Aligned_cols=15 Identities=13% Similarity=-0.141 Sum_probs=10.3
Q ss_pred CccceeecCC--CEEEE
Q 004248 77 VWNGVRCQNG--SVVGI 91 (766)
Q Consensus 77 ~W~gv~C~~~--~v~~l 91 (766)
.|.|+.|+.+ +|+.+
T Consensus 79 ~~~g~i~~~~~~ki~~~ 95 (267)
T 3rw6_A 79 AVNYKILDRENRRISII 95 (267)
T ss_dssp HTTSSCBCTTSCBCCCE
T ss_pred hcCcEEECCCCCEEEEE
Confidence 7999999732 55443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-06 Score=94.22 Aligned_cols=261 Identities=13% Similarity=0.135 Sum_probs=112.2
Q ss_pred CCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCC---CCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 118 HLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCS---ISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 118 ~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~---l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
.|+.+.+..+ + -.|.+.-+.++++|+.+.++.|. ++..-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.
T Consensus 65 ~L~sI~iP~s-v-t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-V-TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-C-CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-e-eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3555555432 1 12333333346666666665543 43333445566666665555433 33233344556666666
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
+.+..+ +...-...|..+.+|+.+.+..+ ++ .+........+|+.+.+..+-. ..-...+.++.+|+......+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccce-eeeecccceecccccccccccce-ee-EeccccccccceeEEEECCccc-ccccchhhhccccceeccccccc
Confidence 666433 22233345555666666665543 22 1111111223455555433221 11222344444444444333322
Q ss_pred CccCCc-------------ccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEE
Q 004248 275 SGSVPS-------------ELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLD 341 (766)
Q Consensus 275 ~g~~p~-------------~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 341 (766)
...--. .+.....+..+.+.++ +. .+....|..+..|+.+.+.++. .......|.++++|+.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIE 294 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEE
T ss_pred ccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEeccccc-ceecCccccccccccccc
Confidence 110000 0011112222222111 10 1233345555666666654332 223344555666666666
Q ss_pred ccCCCCCCCCCcccccCCCCCcEEEccCCc--CccCCCcCCCCCCEEeccC
Q 004248 342 ISRNNFTGPLPNSRSNVNTSTVELNISQNM--FYGGLTPVLGRFRLVDLSG 390 (766)
Q Consensus 342 Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~--l~g~~~~~l~~l~~ldLs~ 390 (766)
+. +.++ .++...+..+.+|+.+++..+- +....+....+|+.+.+..
T Consensus 295 l~-~~i~-~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 295 FS-SRIT-ELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CC-TTCC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT
T ss_pred CC-Cccc-ccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc
Confidence 64 2333 3444455555566666665441 1112223345566665543
|
| >3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-07 Score=94.62 Aligned_cols=137 Identities=11% Similarity=0.073 Sum_probs=90.6
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCC---CcccceeEEEecCCcEEEEEeeCCCC
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHA---RLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~---niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
.+.++.|....||+. |..+++|.-. .......+.+|.++|+.+++. .+.+.+.++....+..++||||++|.
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~-~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~ 98 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK-SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ 98 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES-SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC-CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence 467888988899987 5678888742 222246789999999999753 24455555543345679999999998
Q ss_pred ChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccC---------------------------------------
Q 004248 616 DLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE--------------------------------------- 656 (766)
Q Consensus 616 sL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~--------------------------------------- 656 (766)
.+.+.... .++..++..++.++++.|+.||+.
T Consensus 99 ~l~~~~~~---------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~ 169 (306)
T 3tdw_A 99 ILGEDGMA---------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLR 169 (306)
T ss_dssp ECHHHHHT---------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred ECchhhhh---------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 77653211 123333333444444444433321
Q ss_pred ------------------CCCCeEecCCCCCCeeeCC---CCc-EEeccchhhhh
Q 004248 657 ------------------CTLPFVHRDVQASSILLDD---KFE-VRLGSLSEVCA 689 (766)
Q Consensus 657 ------------------~~~~iiHrDlKp~NILl~~---~~~-~kl~DFG~a~~ 689 (766)
..+.++|+|++|.||+++. ++. +.|.||+.+..
T Consensus 170 ~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 170 DYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2346799999999999997 455 48999998754
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-08 Score=101.37 Aligned_cols=66 Identities=30% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCCCCcEEEeecCcCCC--CCCccccCCCCCCEEEccCCCCCCCCCcccCCCC--CCCEEeccCCcCCCCCC
Q 004248 164 NLTNLTSLYLSDNGLTG--TIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLK--NLSSLDISSNYLTGSIP 231 (766)
Q Consensus 164 ~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p 231 (766)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34444444444444443 2233344444444444444444432 1222222 45555555555544333
|
| >4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.8e-06 Score=87.58 Aligned_cols=135 Identities=14% Similarity=0.056 Sum_probs=91.7
Q ss_pred ceeecCCcc-eEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEecCCcEEEEEeeCCCCC
Q 004248 540 NLIKNGHSG-DLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 540 ~~ig~G~~g-~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
+.+..|..| .||+... .++..+++|+-... ....+.+|.++|+.+. +--+-++++++.+ ++..|+|||+++|.+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS--VANDVTDEMVRLNWLTAFMPLPTIKHFIRT-PDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH--HHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-TTEEEEEEECCCSEE
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC--CHhHHHHHHHHHHHhccCCCcCeEEEEEEE-CCeEEEEEEeeCCcc
Confidence 455666665 6998874 45678999986533 2456889999999885 2235567776655 567899999999987
Q ss_pred hhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccC----------------------------------------
Q 004248 617 LSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE---------------------------------------- 656 (766)
Q Consensus 617 L~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~---------------------------------------- 656 (766)
+.+..... ...+..++.++++.|+-||..
T Consensus 107 ~~~~~~~~-----------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (272)
T 4gkh_A 107 AFQVLEEY-----------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWP 175 (272)
T ss_dssp HHHHHHHC-----------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCC
T ss_pred ccccccCC-----------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchH
Confidence 76654321 112233445555555555531
Q ss_pred ---------------CCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 657 ---------------CTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 657 ---------------~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
..+.++|+|+.+.||++++++.+-|.||+.+.
T Consensus 176 ~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 176 VEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 11237899999999999987777899999875
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.7e-08 Score=95.83 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=19.5
Q ss_pred CCCCCEEEccCC-CCCcc----CCcccCCCCCCcEEEeecCcCC
Q 004248 141 LPTLQALDLRSC-SISGV----IPFSLGNLTNLTSLYLSDNGLT 179 (766)
Q Consensus 141 l~~L~~L~Ls~N-~l~g~----~p~~l~~l~~L~~L~Ls~N~l~ 179 (766)
.++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 556666666666 55421 2223344445555555555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-08 Score=94.93 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=46.7
Q ss_pred hhccCCCCCEEecCCC-CCCCC----CchhhhhCCCCCCEEEccCCCCCcc----CCcccCCCCCCcEEEeecCcCCCC-
Q 004248 112 ALVNLTHLASFNASRF-LLPGS----IPDWLGQQLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGT- 181 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n-~l~g~----ip~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~~~- 181 (766)
.+...+.|+.|++++| .+... +...+. ..++|++|+|++|.|... +...+...++|++|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3455666777777766 55422 222222 256677777777766532 222333445566666666665532
Q ss_pred ---CCccccCCCCCCEEEc--cCCCCC
Q 004248 182 ---IPSSLGQLSVLSVLDL--SRNSLT 203 (766)
Q Consensus 182 ---~p~~l~~L~~L~~L~L--s~N~l~ 203 (766)
+...+...++|++|+| ++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333444445555555 445443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.5e-05 Score=82.64 Aligned_cols=245 Identities=11% Similarity=0.066 Sum_probs=109.5
Q ss_pred hhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCC
Q 004248 111 DALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLS 190 (766)
Q Consensus 111 ~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~ 190 (766)
.++.++++|+.+++..+ + -.|+...+..+ +|+.+.+..+ ++..-...|.+ .+|+.+.+..+- +..-...|.+ .
T Consensus 63 ~aF~~C~~L~~I~lp~~-v-~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~-~ 135 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST-V-TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGAT-TEIGNYIFYN-S 135 (379)
T ss_dssp TTTTTCTTCCEEEECTT-C-CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTC-CEECTTTTTT-C
T ss_pred HHhhCCCCCCEEEeCCc-c-eEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcc-cccccccccc-c
Confidence 35667777777777543 2 23444433334 5666665533 33333334444 367777776542 2122223333 2
Q ss_pred CCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCC------------CCCCCCCCCCCccEEEccCCCCCCCCcccc
Q 004248 191 VLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG------------SIPPGLGTLSKLQYLNVSNNSLASSIPAQL 258 (766)
Q Consensus 191 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 258 (766)
+|+.+.+..+ ++..-...|..+.+|+.+.+..+.... .....+....++..+.+..+.- ......+
T Consensus 136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f 213 (379)
T 4h09_A 136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGF 213 (379)
T ss_dssp CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTT
T ss_pred eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeeccc
Confidence 4555544332 333334456667777776665433210 1111222333344333322211 1122233
Q ss_pred CCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCC
Q 004248 259 GDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR 338 (766)
Q Consensus 259 ~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 338 (766)
....+|+.+.+..+ +.......+.++..|+.+.+..+ ++ .+....|....+|+.+.+.. .++......|.++++|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhccccccc-cceeccccccccccccc
Confidence 44445555554433 22222334445555555555443 21 23334444455555555432 23333344455555555
Q ss_pred EEEccCCCCCCCCCcccccCCCCCcEEEccC
Q 004248 339 LLDISRNNFTGPLPNSRSNVNTSTVELNISQ 369 (766)
Q Consensus 339 ~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~ 369 (766)
.+++.++.++ .|+...+..+.+|+.+++..
T Consensus 290 ~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDNSAIE-TLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECCTTCC-EECTTTTTTCTTCCEEECCT
T ss_pred cccccccccc-eehhhhhcCCCCCCEEEcCc
Confidence 5555554444 33333444445555555543
|
| >3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.3e-06 Score=90.92 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=55.4
Q ss_pred ccee-ecCCcceEEEEEEc-------CCcEEEEEEeeccc---c-CHHHHHHHHHHHhhcCC---CCcccceeEEEecC-
Q 004248 539 ANLI-KNGHSGDLFRGILE-------GGIPVVIKRIDLQS---V-KTEAYLLELDFFSKVSH---ARLVPLLGHCMERE- 602 (766)
Q Consensus 539 ~~~i-g~G~~g~Vy~~~~~-------~g~~vavK~l~~~~---~-~~~~~~~E~~~l~~l~H---~niv~l~~~~~~~~- 602 (766)
.+.| +.|....+|+.... ++..+++|.-.... . ....+.+|+++++.++. -.+.++++++.+..
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88888999998754 26788999765433 1 13467889999988842 24566776554321
Q ss_pred -CcEEEEEeeCCCCChhh
Q 004248 603 -NEKFLVYKYMPNGDLSS 619 (766)
Q Consensus 603 -~~~~lV~Ey~~~GsL~~ 619 (766)
+..|+||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 34689999999877654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=78.48 Aligned_cols=274 Identities=12% Similarity=0.061 Sum_probs=167.2
Q ss_pred cCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 115 NLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 115 ~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
.-.+|+.+.+... + -.|++.-+.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++..-...|.+ .+|+.
T Consensus 44 ~~~~i~~v~ip~~-v-t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNSG-I-TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDD 117 (379)
T ss_dssp GGGGCSEEEECTT-E-EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSE
T ss_pred cccCCEEEEeCCC-c-cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccc
Confidence 3445555555432 1 2344444455788888888644 555555667665 5777776543 44222333433 47888
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCC------------CCccccCCCC
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS------------SIPAQLGDLD 262 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~------------~~p~~l~~l~ 262 (766)
+++..+ ++..-...|.+. +|+.+.+..+ ++..-...+..+.+++.+.+..+.... .....+....
T Consensus 118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 887654 332333344443 5666555433 332334456677778777766554321 1222344455
Q ss_pred CCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEc
Q 004248 263 SLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDI 342 (766)
Q Consensus 263 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 342 (766)
.+..+.+..+. .......+....+|+.+.+..+-- .+....|.....|+.+.+..+ ++......|.++.+|+.+++
T Consensus 195 ~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~~--~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 195 TGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGVT--TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTCC--EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccce-eEEeecccccccccceeeecccee--EEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 56666554432 223445677788999999876632 456667788899999999765 66666778999999999999
Q ss_pred cCCCCCCCCCcccccCCCCCcEEEccCCcCc---cCCCcCCCCCCEEeccCCcCccccChhhhhcc
Q 004248 343 SRNNFTGPLPNSRSNVNTSTVELNISQNMFY---GGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNA 405 (766)
Q Consensus 343 s~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~---g~~~~~l~~l~~ldLs~N~l~g~~p~~~~~~~ 405 (766)
..+ ++ .++...+..+.+|+.+++.++.+. ........+|+.++|..+ ++ .|++..+.++
T Consensus 271 ~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C 332 (379)
T 4h09_A 271 YAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNC 332 (379)
T ss_dssp CCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred ccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCC
Confidence 755 44 566666777899999999887654 234455678999999755 33 3444433333
|
| >2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=84.99 Aligned_cols=146 Identities=14% Similarity=0.204 Sum_probs=82.5
Q ss_pred cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-----CCCcccce-e-EEEecCCcEEEEEee
Q 004248 539 ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-----HARLVPLL-G-HCMERENEKFLVYKY 611 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-----H~niv~l~-~-~~~~~~~~~~lV~Ey 611 (766)
.+.|+.|..+.||+....+| .+++|+.... .+++..|.++++.++ .|.++... | .+....+..++||||
T Consensus 37 ~~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~---~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 37 IDVIQGNQMALVWKVHTDSG-AVCLKRIHRP---EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EEECC----CEEEEEEETTE-EEEEEEECSC---HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeeccccccCcEEEEEeCCC-CEEEEecCCC---HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 34566677899999987665 4899988652 234445666665553 34444311 1 111224568999999
Q ss_pred CCCCChh--------------hhhhccCCC---CCc----CCCCCHHHHH------------------------------
Q 004248 612 MPNGDLS--------------SSLYRKTNT---EDD----LQSLDWITRL------------------------------ 640 (766)
Q Consensus 612 ~~~GsL~--------------~~l~~~~~~---~~~----~~~l~~~~~~------------------------------ 640 (766)
++|.++. ..+|..... ... ...-.|....
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986552 112321110 000 0112343211
Q ss_pred -HHHHHHHHHhhhhcc----------CCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 641 -KIAIGAAEGLSYLHH----------ECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 641 -~i~~~ia~gL~yLH~----------~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
.+...+.+++++|+. ...+.++|+|+++.||+++.++.+.|.||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 011123445666653 123589999999999999888899999999874
|
| >2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.6e-05 Score=85.26 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=50.2
Q ss_pred cceeecCCcceEEEEEEc-CCcEEEEEEeeccc--------cCHHHHHHHHHHHhhcCC--CCcc-cceeEEEecCCcEE
Q 004248 539 ANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQS--------VKTEAYLLELDFFSKVSH--ARLV-PLLGHCMERENEKF 606 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~~--------~~~~~~~~E~~~l~~l~H--~niv-~l~~~~~~~~~~~~ 606 (766)
.+.+|.|.++.||++... +++.|+||...... ...+++.+|.++++.++. |..+ +++. + + ++..+
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~-~-d-~~~~~ 111 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFY-S-D-TEMAV 111 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEE-E-E-TTTTE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEE-E-c-CCccE
Confidence 568999999999999754 56889999864321 123467889999988743 4444 4443 2 3 34568
Q ss_pred EEEeeCCCC
Q 004248 607 LVYKYMPNG 615 (766)
Q Consensus 607 lV~Ey~~~G 615 (766)
+||||+++.
T Consensus 112 lvmE~l~g~ 120 (397)
T 2olc_A 112 TVMEDLSHL 120 (397)
T ss_dssp EEECCCTTS
T ss_pred EEEEeCCCc
Confidence 999999864
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=75.22 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=56.3
Q ss_pred CCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCC---CcccceeEEEecCCcEEEEEee
Q 004248 536 FSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHA---RLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 536 ~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~---niv~l~~~~~~~~~~~~lV~Ey 611 (766)
...++.+|.|..+.||+..+.+|+.|++|+-...... ...|.+|++.|+.+.-. -+.+.++ .. .-++||||
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~--~~---~~~lv~e~ 91 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAG--WD---DRTLAMEW 91 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEE--EE---TTEEEEEC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEe--cc---CceEEEEe
Confidence 4556789999999999999999999999986543322 45688999999988422 2333443 22 24899999
Q ss_pred CCCCCh
Q 004248 612 MPNGDL 617 (766)
Q Consensus 612 ~~~GsL 617 (766)
++++..
T Consensus 92 l~~~~~ 97 (288)
T 3f7w_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred ecccCC
Confidence 987654
|
| >1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0011 Score=69.96 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=90.6
Q ss_pred ccHHHHHHHhCCCC-----ccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCC--Cccccee
Q 004248 524 FTYQQLLAATGDFS-----DANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHA--RLVPLLG 596 (766)
Q Consensus 524 ~~~~~l~~~~~~~~-----~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~--niv~l~~ 596 (766)
++.+++......|. ....++ |....||+....+|+.+++|.........+.+..|.++++.++.. .+.+.+.
T Consensus 11 l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~ 89 (328)
T 1zyl_A 11 LHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVA 89 (328)
T ss_dssp CCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCC
T ss_pred CCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceee
Confidence 44445544443332 234566 888899998877787899999864433456778888888887422 2344443
Q ss_pred E----EEecCCcEEEEEeeCCCCChhh-----------h---hhccCC--CCCcCCCCCHHHH-----------------
Q 004248 597 H----CMERENEKFLVYKYMPNGDLSS-----------S---LYRKTN--TEDDLQSLDWITR----------------- 639 (766)
Q Consensus 597 ~----~~~~~~~~~lV~Ey~~~GsL~~-----------~---l~~~~~--~~~~~~~l~~~~~----------------- 639 (766)
. ....++..++||||++|..+.. . +|.... .......+++...
T Consensus 90 ~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (328)
T 1zyl_A 90 FNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSG 169 (328)
T ss_dssp BTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTT
T ss_pred cCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHH
Confidence 2 1111345688999999754321 1 222110 0000112233211
Q ss_pred -----HHHHHHHHHHhhhhc-cCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 640 -----LKIAIGAAEGLSYLH-HECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 640 -----~~i~~~ia~gL~yLH-~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
...+.+++..++-.. ......++|+|+++.||+++ + .+.|.||+.+..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 170 LKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp THHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 011111122222111 11234678999999999999 4 899999987653
|
| >3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0013 Score=68.88 Aligned_cols=144 Identities=11% Similarity=0.133 Sum_probs=92.5
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcC---CCCcccceeEEEecCCcEEEEEeeCC
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS---HARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
...+.|+.|....+|+... ++..+++|+-... ....|.+|.+.|+.+. ...+.+.++++.. ++..++||||++
T Consensus 39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~--~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-~g~~~lvme~l~ 114 (312)
T 3jr1_A 39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS--YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-QGHSFLLLEALN 114 (312)
T ss_dssp CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG--GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-SSEEEEEEECCC
T ss_pred eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc--cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-CCceEEEEEecc
Confidence 3456799999999999875 4668889987543 3567899999998884 3557778776654 457899999999
Q ss_pred CCChhh-----------hhhccCCCC------C---------cCCCCCHHHHH---HHH--HH--------------HHH
Q 004248 614 NGDLSS-----------SLYRKTNTE------D---------DLQSLDWITRL---KIA--IG--------------AAE 648 (766)
Q Consensus 614 ~GsL~~-----------~l~~~~~~~------~---------~~~~l~~~~~~---~i~--~~--------------ia~ 648 (766)
+..+.. .||...... . ..-.-+|.+.. ++. .+ ++.
T Consensus 115 G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~ 194 (312)
T 3jr1_A 115 KSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQ 194 (312)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 876521 234322100 0 00012565421 111 11 111
Q ss_pred H-hhhhc-cCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 649 G-LSYLH-HECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 649 g-L~yLH-~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
. ...|. ....+.+||+|+.+.||+++.++ +.|.||.
T Consensus 195 ~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 195 IVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1 12332 12357899999999999999887 8899984
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.38 E-value=3.1e-05 Score=73.76 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCc-CCCCCCccccCC----CCCCEEEccCCC-CCCCCCcccCCCCCC
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG-LTGTIPSSLGQL----SVLSVLDLSRNS-LTGNIPTSFGLLKNL 216 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L 216 (766)
.|+.|||+++.++..--..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57888888887765444456777888888888774 543222234443 257777777764 543222234556666
Q ss_pred CEEeccCCc
Q 004248 217 SSLDISSNY 225 (766)
Q Consensus 217 ~~L~Ls~N~ 225 (766)
++|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
|
| >2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00045 Score=72.82 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=90.5
Q ss_pred cccHHHHHHHhCCCCc-----cceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCC--cccce
Q 004248 523 SFTYQQLLAATGDFSD-----ANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR--LVPLL 595 (766)
Q Consensus 523 ~~~~~~l~~~~~~~~~-----~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~ 595 (766)
.++.+++......|.. .+.|+.|....+|+....+| .+++|..... ...+++..|++++..++... +.+++
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~-~~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR-VEKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 3566677777666754 34567788889999987666 6889987642 12345667888887774222 22333
Q ss_pred eE-----EEecCCcEEEEEeeCCCCChhh--------------hhhccCCC-C-Cc---CCCCCHHHHHHH---------
Q 004248 596 GH-----CMERENEKFLVYKYMPNGDLSS--------------SLYRKTNT-E-DD---LQSLDWITRLKI--------- 642 (766)
Q Consensus 596 ~~-----~~~~~~~~~lV~Ey~~~GsL~~--------------~l~~~~~~-~-~~---~~~l~~~~~~~i--------- 642 (766)
.. +....+..++||||++|..+.. .+|..... . .. .....|.....-
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 21 1111345789999999865421 12221110 0 00 001124331110
Q ss_pred ---HHHHHHHhhhhcc----CCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 643 ---AIGAAEGLSYLHH----ECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 643 ---~~~ia~gL~yLH~----~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
...+.+.++++++ .....++|+|+.+.||+++++..+.|.||+.+.
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 0113333444432 123478999999999999987666899998764
|
| >2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00088 Score=73.56 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=44.1
Q ss_pred ccceeecCCcceEEEEEEcCCcEEEEEEeec-------c-cc--CHHHHHHHHHHHhh-cCCCCcccceeEEEecCCcEE
Q 004248 538 DANLIKNGHSGDLFRGILEGGIPVVIKRIDL-------Q-SV--KTEAYLLELDFFSK-VSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~-------~-~~--~~~~~~~E~~~l~~-l~H~niv~l~~~~~~~~~~~~ 606 (766)
..+.+|.|..+.||++.. +++.++||.... . .. .+..+..|+..+.. ..+..+.+++.+. ++..+
T Consensus 38 ~i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~---~~~~~ 113 (420)
T 2pyw_A 38 VIKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD---RTMAL 113 (420)
T ss_dssp EEEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE---TTTTE
T ss_pred EEEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC---CCccE
Confidence 357789999999999864 467899994321 1 11 22334444433322 2234455566533 34679
Q ss_pred EEEeeC-CC
Q 004248 607 LVYKYM-PN 614 (766)
Q Consensus 607 lV~Ey~-~~ 614 (766)
+||||+ ++
T Consensus 114 lv~e~l~~g 122 (420)
T 2pyw_A 114 IGMRYLEPP 122 (420)
T ss_dssp EEECCCCTT
T ss_pred EEEeecCCc
Confidence 999999 76
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.20 E-value=5e-05 Score=72.29 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCC-CCCCCCcccCCC----CCCCEEeccCCc-CCCCCCCCCCCCCC
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS-LTGNIPTSFGLL----KNLSSLDISSNY-LTGSIPPGLGTLSK 239 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 239 (766)
.+|++|||+++.++..--..+.++++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888887765434456677777777777764 442211223332 245666665553 33211112334444
Q ss_pred ccEEEccCC
Q 004248 240 LQYLNVSNN 248 (766)
Q Consensus 240 L~~L~Ls~N 248 (766)
|++|+|+++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555554444
|
| >3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=69.39 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=45.4
Q ss_pred CccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcc-cceeEEEecCCcEEEEEeeC-CC
Q 004248 537 SDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLV-PLLGHCMERENEKFLVYKYM-PN 614 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv-~l~~~~~~~~~~~~lV~Ey~-~~ 614 (766)
...+.|+.|....+|+. ..+++|.-...........+|+++++.+....+. +++++ . .+.-++|+||+ ++
T Consensus 21 ~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~-~~~~~~v~e~i~~g 92 (301)
T 3dxq_A 21 TGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHV--D-PATGVMVTRYIAGA 92 (301)
T ss_dssp CSCEEEESCSSEEEEEE-----TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEE--C-TTTCCEEEECCTTC
T ss_pred cceeEcCCcccccccee-----eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEE--E-CCCCEEEEeecCCC
Confidence 33688999999999998 5688887754321111235688888777533343 44432 2 23457999999 65
Q ss_pred CCh
Q 004248 615 GDL 617 (766)
Q Consensus 615 GsL 617 (766)
.++
T Consensus 93 ~~l 95 (301)
T 3dxq_A 93 QTM 95 (301)
T ss_dssp EEC
T ss_pred ccC
Confidence 444
|
| >3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0032 Score=67.91 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=82.4
Q ss_pred cceeecCCcceEEEEEEc--------CCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCc-ccceeEEEecCCcEEEEE
Q 004248 539 ANLIKNGHSGDLFRGILE--------GGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL-VPLLGHCMERENEKFLVY 609 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~~lV~ 609 (766)
.+.+..|-...+|+.... +++.+++|+-.........+.+|.++++.+.-..+ .++++++ + + .+||
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~-~--~--g~v~ 129 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVF-P--E--GRLE 129 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEE-T--T--EEEE
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEc-C--C--ccEE
Confidence 356777888899998864 24789999853322235567799999988853334 3455433 2 2 3999
Q ss_pred eeCCCCChhhh-----------------hhccCCCCCcCCCC--CHHHHHHHHHHHHHH-------------------hh
Q 004248 610 KYMPNGDLSSS-----------------LYRKTNTEDDLQSL--DWITRLKIAIGAAEG-------------------LS 651 (766)
Q Consensus 610 Ey~~~GsL~~~-----------------l~~~~~~~~~~~~l--~~~~~~~i~~~ia~g-------------------L~ 651 (766)
||++|.+|..- ||..... ..... -|.+..++..++... ++
T Consensus 130 e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~--~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (379)
T 3feg_A 130 QYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMP--FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG 207 (379)
T ss_dssp ECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCS--SCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred EEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCC--CCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence 99998655311 1221110 01112 245555555443221 22
Q ss_pred hh----cc-CCCCCeEecCCCCCCeeeCCC----CcEEeccchhhh
Q 004248 652 YL----HH-ECTLPFVHRDVQASSILLDDK----FEVRLGSLSEVC 688 (766)
Q Consensus 652 yL----H~-~~~~~iiHrDlKp~NILl~~~----~~~kl~DFG~a~ 688 (766)
.| .. .....++|+|+.+.||+++.+ +.+.+.||..|.
T Consensus 208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 22 11 123468899999999999876 789999998775
|
| >3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0064 Score=64.25 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=72.1
Q ss_pred cceeecCCcce-EEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCC--CCcccceeEEEecCCcEEEEEeeCCCC
Q 004248 539 ANLIKNGHSGD-LFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSH--ARLVPLLGHCMERENEKFLVYKYMPNG 615 (766)
Q Consensus 539 ~~~ig~G~~g~-Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~~~~~lV~Ey~~~G 615 (766)
.+.++.|.... +|+....+|..+++|...... .+++..|+++++.+.. -.+.+++.+. . ++. ++|||++.+.
T Consensus 23 ~~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~--~~~~~~e~~~l~~L~~~g~~vP~v~~~d-~-~~g-~ll~e~l~~~ 97 (333)
T 3csv_A 23 RTPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE--GGDTQPFVDLAQYLRNLDISAPEIYAEE-H-ARG-LLLIEDLGDA 97 (333)
T ss_dssp ECC--------CCEEEECTTCCEEEEEECCTTT--TCCSHHHHHHHHHHHHTTCBCCCEEEEE-T-TTT-EEEECCCCSC
T ss_pred eeECCCCCCCceEEEEEcCCCCeEEEEECCCCC--CccccHHHHHHHHHHhCCCCCCceeeec-C-CCC-EEEEeeCCCc
Confidence 34565554444 667765446677777654322 1334567777776642 2244555532 2 222 7899999876
Q ss_pred ChhhhhhccCC-------------------CCCcCCCCCHHHHH------------H--------HHHHHHHHhhhhc--
Q 004248 616 DLSSSLYRKTN-------------------TEDDLQSLDWITRL------------K--------IAIGAAEGLSYLH-- 654 (766)
Q Consensus 616 sL~~~l~~~~~-------------------~~~~~~~l~~~~~~------------~--------i~~~ia~gL~yLH-- 654 (766)
.+.+++..... .......++..... . ....+.+.++.+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 177 (333)
T 3csv_A 98 LFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSA 177 (333)
T ss_dssp BHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 66544321100 00000112111000 0 0001111122221
Q ss_pred -cCCCCCeEecCCCCCCeeeCCC----CcEEeccchhhhh
Q 004248 655 -HECTLPFVHRDVQASSILLDDK----FEVRLGSLSEVCA 689 (766)
Q Consensus 655 -~~~~~~iiHrDlKp~NILl~~~----~~~kl~DFG~a~~ 689 (766)
....+.++|+|+.+.||+++.+ ..+.|.||+.+..
T Consensus 178 ~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 178 QLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp HCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred cccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1123478999999999999875 6799999998753
|
| >2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0054 Score=67.85 Aligned_cols=74 Identities=11% Similarity=0.017 Sum_probs=47.3
Q ss_pred cceeecCCcceEEEEEEcC-CcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcc-cceeEEEecCCcEEEEEeeCCCCC
Q 004248 539 ANLIKNGHSGDLFRGILEG-GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLV-PLLGHCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~-g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv-~l~~~~~~~~~~~~lV~Ey~~~Gs 616 (766)
.+.|+.|-...+|+....+ +..+++|+-.......-.-.+|..+++.+...+++ ++++.+ . + ..||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~-~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFF-T--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEE-T--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEe-C--C--eEEEEeeCCcc
Confidence 4678888889999998765 57888887643221111125799999999766664 455533 2 2 35999999755
Q ss_pred h
Q 004248 617 L 617 (766)
Q Consensus 617 L 617 (766)
|
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0019 Score=69.49 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=43.9
Q ss_pred cceeecCCcceEEEEEEcC---------CcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcc-cceeEEEecCCcEEEE
Q 004248 539 ANLIKNGHSGDLFRGILEG---------GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLV-PLLGHCMERENEKFLV 608 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~---------g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv-~l~~~~~~~~~~~~lV 608 (766)
.+.++.|....+|+....+ +..+++|.-........+..+|.++++.+....++ ++++. . + -++|
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~--~-~--~~~v 112 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNT--F-N--GGRI 112 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEE--E-T--TEEE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEe--c-C--CcEE
Confidence 3567788888999988654 26788887643321111235788888888544444 55542 2 2 2789
Q ss_pred EeeCCCCCh
Q 004248 609 YKYMPNGDL 617 (766)
Q Consensus 609 ~Ey~~~GsL 617 (766)
|||++|..+
T Consensus 113 ~e~i~G~~l 121 (369)
T 3c5i_A 113 EEWLYGDPL 121 (369)
T ss_dssp EECCCSEEC
T ss_pred EEEecCCcC
Confidence 999997544
|
| >1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0072 Score=66.42 Aligned_cols=73 Identities=23% Similarity=0.211 Sum_probs=49.7
Q ss_pred cceeecCCcceEEEEEEcC--------CcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCc-ccceeEEEecCCcEEEEE
Q 004248 539 ANLIKNGHSGDLFRGILEG--------GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL-VPLLGHCMERENEKFLVY 609 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~--------g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~~lV~ 609 (766)
.+.|+.|....||+....+ +..+++|+-... ...+.+.+|..+++.+...++ .++++.+ . + .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~li~E~~~l~~L~~~g~~P~l~~~~-~--~--g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ETESHLVAESVIFTLLSERHLGPKLYGIF-S--G--GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CCHHHHHHHHHHHHHHHHTTSSSCEEEEE-T--T--EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-CcHHHHHHHHHHHHHHHhCCCCCcEEEEe-C--C--CEEE
Confidence 4568888889999998653 478889887321 112567789999998854444 4555532 2 2 3899
Q ss_pred eeCCCCCh
Q 004248 610 KYMPNGDL 617 (766)
Q Consensus 610 Ey~~~GsL 617 (766)
||++|.++
T Consensus 152 e~l~G~~l 159 (429)
T 1nw1_A 152 EYIPSRPL 159 (429)
T ss_dssp CCCCEEEC
T ss_pred EEeCCccc
Confidence 99986444
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0044 Score=55.89 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=25.1
Q ss_pred CCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCC
Q 004248 143 TLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLT 179 (766)
Q Consensus 143 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 179 (766)
+|++|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777777777666666666677777777766553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0072 Score=54.45 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=13.2
Q ss_pred CCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 192 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
|++|+|++|+|+...+..|..+++|+.|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444444333333333444444444443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.00054 Score=66.39 Aligned_cols=7 Identities=29% Similarity=0.620 Sum_probs=0.0
Q ss_pred Cccceee
Q 004248 77 VWNGVRC 83 (766)
Q Consensus 77 ~W~gv~C 83 (766)
.|.+|..
T Consensus 6 ~~~~~~k 12 (197)
T 1pgv_A 6 TFNGIMQ 12 (197)
T ss_dssp -------
T ss_pred cccceec
Confidence 4666554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.00063 Score=65.90 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCCCCcEEEeecC-cCCCC----CCccccCCCCCCEEEccCCCCCCC----CCcccCCCCCCCEEeccCCcCC
Q 004248 163 GNLTNLTSLYLSDN-GLTGT----IPSSLGQLSVLSVLDLSRNSLTGN----IPTSFGLLKNLSSLDISSNYLT 227 (766)
Q Consensus 163 ~~l~~L~~L~Ls~N-~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 227 (766)
.+-+.|++|+|++| .+... +-..+..-+.|+.|+|++|++... +...+..-+.|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44456666777664 54311 223344445566666666665421 1122223344555555555554
|
| >3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.019 Score=60.88 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 659 LPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 659 ~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
..++|+|+.+.||++++++.+.|.||+.+..
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 4789999999999999888899999987653
|
| >3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.22 Score=54.29 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=47.6
Q ss_pred cceeecCCcceEEEEEEcC--------CcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcc-cceeEEEecCCcEEEEE
Q 004248 539 ANLIKNGHSGDLFRGILEG--------GIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLV-PLLGHCMERENEKFLVY 609 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~--------g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv-~l~~~~~~~~~~~~lV~ 609 (766)
.+.+..|-...+|+....+ ++.+++|+-.......-+-.+|.++++.+.-..++ ++++ .. . -+.||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~--~~-~--~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIA--DF-P--EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEE--EE-T--TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEE--Ec-C--CCEEE
Confidence 4567778888999998653 57899988643221111235788888888533444 4443 22 2 27899
Q ss_pred eeCCCCCh
Q 004248 610 KYMPNGDL 617 (766)
Q Consensus 610 Ey~~~GsL 617 (766)
||++|.+|
T Consensus 150 efI~G~~l 157 (424)
T 3mes_A 150 EFIDGEPL 157 (424)
T ss_dssp ECCCSEEC
T ss_pred EEeCCccC
Confidence 99998654
|
| >2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A | Back alignment and structure |
|---|
Probab=89.43 E-value=0.34 Score=47.19 Aligned_cols=99 Identities=14% Similarity=-0.030 Sum_probs=63.1
Q ss_pred CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCCC
Q 004248 615 GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDA 694 (766)
Q Consensus 615 GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~~ 694 (766)
-+|.++|...+ .++++++.+.++.|.+++|.-+-.+.. + ..+=+-|..|++..+|.+...+ ..+.
T Consensus 33 vSL~eIL~~~~------~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------ 97 (229)
T 2yle_A 33 LSLEEILRLYN------QPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD------ 97 (229)
T ss_dssp EEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C---------
T ss_pred ccHHHHHHHcC------CCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc------
Confidence 37889997654 469999999999999999876611100 1 1222346889999999988874 2211
Q ss_pred ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc
Q 004248 695 HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF 741 (766)
Q Consensus 695 ~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt 741 (766)
.....+.+||..... .+++.=|||+|+++|..+-
T Consensus 98 ---~~~~~~~~pe~~~~~----------~te~~~IysLG~tLY~ALD 131 (229)
T 2yle_A 98 ---AGEPPPVAGKLGYSQ----------CMETEVIESLGIIIYKALD 131 (229)
T ss_dssp ------------CCSSSS----------SCHHHHHHHHHHHHHHHHT
T ss_pred ---ccccCCCChhhcccc----------chHHHHHHHHHHHHHHHhh
Confidence 112345677765311 4689999999999998775
|
| >3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A | Back alignment and structure |
|---|
Probab=86.55 E-value=0.096 Score=57.92 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=17.5
Q ss_pred cceeecCCcceEEEEEEcC-CcEEEE------EEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEE
Q 004248 539 ANLIKNGHSGDLFRGILEG-GIPVVI------KRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCM 599 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~-g~~vav------K~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~ 599 (766)
.+.+| ||.||+|.+.. ..+||| |........ .+.|.+|..++++.+|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 45566 99999999754 468999 766543322 346899999999999999999998754
|
| >3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A* | Back alignment and structure |
|---|
Probab=84.91 E-value=1.5 Score=47.19 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.8
Q ss_pred eEecCCCCCCeee------CCCCcEEeccchhhh
Q 004248 661 FVHRDVQASSILL------DDKFEVRLGSLSEVC 688 (766)
Q Consensus 661 iiHrDlKp~NILl------~~~~~~kl~DFG~a~ 688 (766)
++|.|+.+.||++ +++..+++.||-.|.
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 5699999999999 456779999998775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 766 | ||||
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 4e-24 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 7e-24 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 6e-22 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 7e-22 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 2e-21 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 3e-21 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 3e-21 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-21 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-18 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 4e-21 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 1e-20 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 2e-20 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 2e-20 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 3e-20 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 3e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-04 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 2e-19 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 6e-19 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 1e-18 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 6e-18 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 6e-18 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 2e-17 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 2e-17 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 3e-17 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 3e-17 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 3e-17 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 5e-17 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 6e-17 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 7e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-16 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 0.002 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 5e-16 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 5e-16 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 8e-16 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 9e-16 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 1e-15 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 1e-15 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 3e-15 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 5e-15 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 5e-15 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 6e-15 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 1e-14 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 1e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-10 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 2e-14 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 3e-14 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 9e-14 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 3e-13 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 7e-13 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 9e-13 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 1e-12 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 3e-12 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 4e-12 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 4e-12 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 1e-11 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 1e-11 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 2e-11 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 2e-11 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 5e-11 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-11 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.003 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 8e-11 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 1e-10 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 2e-10 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 3e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 7e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-07 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 8e-10 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-09 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-04 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 2e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 7e-09 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 2e-08 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 2e-08 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 8e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 4e-07 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 3e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 5e-07 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.004 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 3e-06 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 3e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 4e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 9e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 3e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 2e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 5e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 3e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 7e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.001 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 3e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 5e-04 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 0.003 |
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (250), Expect = 4e-24
Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 17/217 (7%)
Query: 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPL 594
+ G G+++ G G V +K + S+ +A+L E + ++ H RLV L
Sbjct: 14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL 73
Query: 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH 654
+ +++ +YM NG L L + L L +A AEG++++
Sbjct: 74 YAVVT--QEPIYIITEYMENGSLVDFLKTPSG-----IKLTINKLLDMAAQIAEGMAFIE 126
Query: 655 HECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSS 714
++HRD++A++IL+ D ++ + + +R + ++ + +
Sbjct: 127 ERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 183
Query: 715 GMV------IYLFIIFTIFHIYFHGNPLFSAIFNNHL 745
++ F I + I HG + + N +
Sbjct: 184 YGTFTIKSDVWSFGI-LLTEIVTHGRIPYPGMTNPEV 219
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.7 bits (248), Expect = 7e-24
Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 24/220 (10%)
Query: 535 DFSDANLIK---NGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
+ + L++ G GD+ G G V +K I + +A+L E +++ H+ L
Sbjct: 5 NMKELKLLQTIGKGEFGDVMLGDYRGN-KVAVKCIKNDATA-QAFLAEASVMTQLRHSNL 62
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V LLG +E + ++V +YM G L L + L LK ++ E +
Sbjct: 63 VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAME 117
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQ 711
YL FVHRD+ A ++L+ + ++ ++ P++ +
Sbjct: 118 YLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE 174
Query: 712 G---------SSGMVIYLFIIFTIFHIYFHGNPLFSAIFN 742
S G++ L+ I++ + + PL +
Sbjct: 175 KKFSTKSDVWSFGIL--LWEIYSFGRVPYPRIPLKDVVPR 212
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.4 bits (234), Expect = 6e-22
Identities = 40/218 (18%), Positives = 89/218 (40%), Gaps = 17/218 (7%)
Query: 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP 593
D + + + G G+++ G+ + + V +K + +++ E +L E ++ H LV
Sbjct: 18 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ 77
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
LLG C E +++ ++M G+L L Q + + L +A + + YL
Sbjct: 78 LLGVCTR-EPPFYIITEFMTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYL 131
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLP------Q 707
F+HRD+ A + L+ + V++ GD + + +
Sbjct: 132 EK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESL 188
Query: 708 SSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745
+ + S ++ F + ++ I +G + I + +
Sbjct: 189 AYNKFSIKSDVWAFGV-LLWEIATYGMSPYPGIDLSQV 225
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.9 bits (233), Expect = 7e-22
Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 18/170 (10%)
Query: 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHAR 590
G + I +G G +++G G V +K +++ + + +A+ E+ K H
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
++ +G+ + +V ++ L L+ + I + IA A+G+
Sbjct: 66 ILLFMGYS--TAPQLAIVTQWCEGSSLYHHLHIIET------KFEMIKLIDIARQTAQGM 117
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSR 698
YLH + +HRD+++++I L + V++G L+ V ++ +HQ
Sbjct: 118 DYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 164
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.8 bits (230), Expect = 2e-21
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 535 DFSDANLIK---NGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
D S+ ++ +G G + G V IK I ++ E ++ E + K+SH +L
Sbjct: 3 DPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKL 62
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V L G C+E + LV+++M +G LS L + T L + + EG++
Sbjct: 63 VQLYGVCLE-QAPICLVFEFMEHGCLSDYLRTQRGLF------AAETLLGMCLDVCEGMA 115
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YL C +HRD+ A + L+ + +++
Sbjct: 116 YLEEAC---VIHRDLAARNCLVGENQVIKVS 143
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.2 bits (231), Expect = 3e-21
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT--EAYLLELDFFSKVSHARL 591
DF + + G+ G +F+ G+ + K I L+ + EL + + +
Sbjct: 7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V G + E + ++M G L L + + K++I +GL+
Sbjct: 67 VGFYGAFYS-DGEISICMEHMDGGSLDQVLKKA-------GRIPEQILGKVSIAVIKGLT 118
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YL + +HRDV+ S+IL++ + E++L
Sbjct: 119 YLREKH--KIMHRDVKPSNILVNSRGEIKLC 147
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.0 bits (228), Expect = 3e-21
Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 13/221 (5%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHAR 590
D+ I G G + G +V K +D S+ + + E++ ++ H
Sbjct: 5 DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64
Query: 591 LVPLLGHCMERENEK-FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
+V ++R N ++V +Y GDL+S + + T Q LD L++
Sbjct: 65 IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKER---QYLDEEFVLRVMTQLTLA 121
Query: 650 LSYLH--HECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQS-RITRLLR 704
L H + +HRD++ +++ LD K V+LG L+ + ++ T
Sbjct: 122 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYM 181
Query: 705 LPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745
P+ + S ++ + + + P F+A L
Sbjct: 182 SPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL 222
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 92.8 bits (229), Expect = 3e-21
Identities = 58/291 (19%), Positives = 99/291 (34%), Gaps = 11/291 (3%)
Query: 151 SCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSF 210
CS G+ + L L +N +T L L L L N ++ P +F
Sbjct: 16 QCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75
Query: 211 GLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLS 270
L L L +S N L TL +L+ + S+ L +V+L +
Sbjct: 76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTN 134
Query: 271 MNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDV 330
SG +G++ L I + ++ + L P L + L N T
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAAS 190
Query: 331 LWSMPQLRLLDISRNNFTGPLPNSRSNVNT-STVELNISQNMFYGGLTPVLGRFRLVDLS 389
L + L L +S N+ + S +N + LN ++ + G ++V L
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250
Query: 390 GNYFEG-----RVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLS 435
N P ++ +S L + P Q + S+F +
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.8 bits (203), Expect = 7e-18
Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 6/243 (2%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
I D + L L L L + IS + P + L L LYLS N L L
Sbjct: 45 EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L V + + ++ + + L + +G + KL Y+ +++ ++
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI- 162
Query: 252 SSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVS 311
++IP L SL +L L N ++ + L+GL +L K + N +S
Sbjct: 163 TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTP 219
Query: 312 QLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNM 371
L+ + L N P + ++++ + NN + N +T + + S
Sbjct: 220 HLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278
Query: 372 FYG 374
+
Sbjct: 279 LFS 281
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.5 bits (229), Expect = 4e-21
Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 25/195 (12%)
Query: 522 ESFTYQQLLAATGDFSDA---------NLIKNGHSGDLFRGIL----EGGIPVVIKRIDL 568
+ FT++ A +F+ +I G G++ G L + I V IK +
Sbjct: 5 DPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKS 64
Query: 569 QSVKT--EAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTN 626
+ +L E + H ++ L + + ++ ++M NG L S L +
Sbjct: 65 GYTEKQRRDFLSEASIMGQFDHPNVIHLE-GVVTKSTPVMIITEFMENGSLDSFLRQNDG 123
Query: 627 TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686
I + + G A G+ YL +VHRD+ A +IL++ ++
Sbjct: 124 QFT------VIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGL 174
Query: 687 VCAQGGDAHQSRITR 701
D T
Sbjct: 175 SRFLEDDTSDPTYTS 189
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.1 bits (223), Expect = 1e-20
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 535 DFSDANLIK---NGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL 591
D D +K G G + G G V IK I S+ + ++ E +SH +L
Sbjct: 2 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKL 61
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V L G C + + F++ +YM NG L + L + L++ E +
Sbjct: 62 VQLYGVCTK-QRPIFIITEYMANGCLLNYLREMRHR------FQTQQLLEMCKDVCEAME 114
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YL + F+HRD+ A + L++D+ V++
Sbjct: 115 YLESKQ---FLHRDLAARNCLVNDQGVVKVS 142
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (224), Expect = 2e-20
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENE 604
G G+++RG G V +K + ++ E+ + H ++ + +
Sbjct: 14 GRFGEVWRGKWRG-EEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGT 72
Query: 605 K---FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC---- 657
+LV Y +G L L R T + +K+A+ A GL++LH E
Sbjct: 73 WTQLWLVSDYHEHGSLFDYLNRYT--------VTVEGMIKLALSTASGLAHLHMEIVGTQ 124
Query: 658 -TLPFVHRDVQASSILLDDKFEVRLG 682
HRD+++ +IL+ +
Sbjct: 125 GKPAIAHRDLKSKNILVKKNGTCCIA 150
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.4 bits (224), Expect = 2e-20
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 536 FSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT----EAYLLELDFFSKVSHAR 590
FSD I +G G ++ + V IK++ ++ + + E+ F K+ H
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
+ G RE+ +LV +Y K + L + + GA +GL
Sbjct: 77 TIQYRGCY-LREHTAWLVMEYCLGSASDLLEVHK-------KPLQEVEIAAVTHGALQGL 128
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
+YLH +HRDV+A +ILL + V+LG
Sbjct: 129 AYLHSH---NMIHRDVKAGNILLSEPGLVKLG 157
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.7 bits (222), Expect = 3e-20
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 545 GHSGDLFRGI-LEGGIPVVIKRIDLQSVKT-EAYLLELDFFSKVSHARLVPLLGHCMERE 602
G G +++ E + K ID +S + E Y++E+D + H +V LL E
Sbjct: 23 GAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-E 81
Query: 603 NEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFV 662
N +++ ++ G + + + + L + + L+YLH +
Sbjct: 82 NNLWILIEFCAGGAVDAVMLELE------RPLTESQIQVVCKQTLDALNYLHD---NKII 132
Query: 663 HRDVQASSILLDDKFEVRLG 682
HRD++A +IL +++L
Sbjct: 133 HRDLKAGNILFTLDGDIKLA 152
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.4 bits (221), Expect = 3e-20
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 535 DFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPL 594
+ G G+++ G G V IK + ++ EA+L E K+ H +LV L
Sbjct: 18 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL 77
Query: 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH 654
E ++V +YM G L L +T + L + +A A G++Y+
Sbjct: 78 YAVVS--EEPIYIVTEYMSKGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVE 130
Query: 655 HECTLPFVHRDVQASSILLDDKFEVRLG 682
+VHRD++A++IL+ + ++
Sbjct: 131 RMN---YVHRDLRAANILVGENLVCKVA 155
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 89.3 bits (220), Expect = 1e-19
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 33/213 (15%)
Query: 104 QNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLG 163
N L LT+L S A+ + P + L L L + +L
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLA 238
Query: 164 NLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIP---------------- 207
+LTNLT L L++N ++ P L L+ L+ L L N ++ P
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296
Query: 208 ----TSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDS 263
+ LKNL+ L + N ++ P + +L+KLQ L +NN + S + L +L +
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTN 352
Query: 264 LVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNN 296
+ L N +S P L L + + + +
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 79.7 bits (195), Expect = 2e-16
Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 42/235 (17%)
Query: 136 WLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195
+ +L L++L + IS + P LTNL L L+ N L +L L+ L+ L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDL 246
Query: 196 DLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP 255
DL+ N ++ P L L+ L + +N ++ P L L+ L L ++ N
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ--LEDI 300
Query: 256 AQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQI 315
+ + +L +L L L N++S P + L LQ+ NN +S
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--------------- 343
Query: 316 IVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQN 370
L ++ + L N + P + T +L ++
Sbjct: 344 ------------VSSLANLTNINWLSAGHNQISDLTPLANL---TRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.0 bits (118), Expect = 6e-07
Identities = 47/250 (18%), Positives = 79/250 (31%), Gaps = 29/250 (11%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
L + L I + + L NLT + S+N LT P L L+ L + ++
Sbjct: 42 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLN--------------- 244
N + P + +L + + N
Sbjct: 98 NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157
Query: 245 VSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304
+ + L +L +L LD+S N +S L +L+ + NN +S +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPL 215
Query: 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVE 364
+ L + L N L S+ L LD++ N + P S T E
Sbjct: 216 GILT---NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSG---LTKLTE 267
Query: 365 LNISQNMFYG 374
L + N
Sbjct: 268 LKLGANQISN 277
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.9 bits (110), Expect = 5e-06
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 34/128 (26%)
Query: 149 LRSCSISGVIP----FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTG 204
L S +I+ P F+ L L +T T+ + L ++ L R
Sbjct: 1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL---- 54
Query: 205 NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSL 264
+ S+D G+ L+ L +N SNN L P L +L L
Sbjct: 55 ----------GIKSID------------GVEYLNNLTQINFSNNQLTDITP--LKNLTKL 90
Query: 265 VDLDLSMN 272
VD+ ++ N
Sbjct: 91 VDILMNNN 98
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 1e-05
Identities = 52/297 (17%), Positives = 105/297 (35%), Gaps = 30/297 (10%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL------ 192
+ L L ++ + ++ + P NLT L + +++N + P +
Sbjct: 63 EYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120
Query: 193 ---------SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYL 243
++ +L+R L+ N + L L+SL S + L L+ L+ L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180
Query: 244 NVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLS 303
++S+N S + L L +L L + N +S P + +L + + N L
Sbjct: 181 DISSNK--VSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--- 233
Query: 304 VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTV 363
+ +++ L + L N + P L + +L L + N + P + + T
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTN 289
Query: 364 ELNISQNMFYGGLTPVLGRFRLVDLSGNYFEGRVPEYVHSNASSLD--SNCLQNVPN 418
+ L + L N P + L +N + +V +
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS 346
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 8e-04
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 213 LKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMN 272
L + +T ++ L ++ L + SI + L++L ++ S N
Sbjct: 21 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSNN 76
Query: 273 SLSGSVPSELRGLRSLQKF 291
L+ P L+ L L
Sbjct: 77 QLTDITP--LKNLTKLVDI 93
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.6 bits (216), Expect = 2e-19
Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 28/232 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGILEGG---IPVVIKRIDLQSVKT--EAYLLELDFFSKVS-H 588
D ++I G+ G + + ++ + IKR+ + K + EL+ K+ H
Sbjct: 11 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 70
Query: 589 ARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDL---------QSLDWITR 639
++ LLG C E +L +Y P+G+L L + E D +L
Sbjct: 71 PNIINLLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129
Query: 640 LKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQS 697
L A A G+ YL F+HRD+ A +IL+ + + ++ LS
Sbjct: 130 LHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMG 186
Query: 698 RITRLLRLPQSSEQGSSGM-------VIYLFIIFTIFHIYFHGNPLFSAIFN 742
R+ +S + L+ I ++ + G
Sbjct: 187 RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEK 238
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (212), Expect = 6e-19
Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 36/240 (15%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVKT--EAYLLELDFFSKV 586
S + G G + G + V +K + + T EA + EL S +
Sbjct: 24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83
Query: 587 S-HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNT-----------EDDLQSL 634
H +V LLG C ++ +Y GDL + L RK ++ EDD +L
Sbjct: 84 GNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142
Query: 635 DWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGG 692
D L + A+G+++L + +HRD+ A +ILL ++ L+
Sbjct: 143 DLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199
Query: 693 DAHQSRITR----------LLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN 742
+ R + + E I+L+ +F++ + G P+ S +
Sbjct: 200 NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYK 259
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.8 bits (209), Expect = 1e-18
Identities = 40/233 (17%), Positives = 91/233 (39%), Gaps = 26/233 (11%)
Query: 527 QQLLAATGDFSDANL-IKNGHSGDLFRGIL---EGGIPVVIKRIDLQSVK--TEAYLLEL 580
++L + A++ + G+ G + +G+ + I V IK + + K TE + E
Sbjct: 1 KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60
Query: 581 DFFSKVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRL 640
++ + +V L+G C + LV + G L L K + +
Sbjct: 61 QIMHQLDNPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKR------EEIPVSNVA 112
Query: 641 KIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSR 698
++ + G+ YL + FVHRD+ A ++LL ++ ++ LS+ + +R
Sbjct: 113 ELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 169
Query: 699 ITRLLRLPQSSEQGSSGMV------IYLFIIFTIFHIYFHGNPLFSAIFNNHL 745
L + + + ++ + + T++ +G + + +
Sbjct: 170 SAGKWPLKWYAPECINFRKFSSRSDVWSYGV-TMWEALSYGQKPYKKMKGPEV 221
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 84.0 bits (207), Expect = 6e-18
Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 16/205 (7%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL-ELDFFSKVSHARLVPLLGHC 598
+ +G G + R + G V K I+ + + E+ +++ H +L+ L
Sbjct: 36 ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
+ + E L+ +++ G+L + + + + A EGL ++H
Sbjct: 96 ED-KYEMVLILEFLSGGELFDRIAAED------YKMSEAEVINYMRQACEGLKHMHE--- 145
Query: 659 LPFVHRDVQASSILLDDKFEVRLG----SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSS 714
VH D++ +I+ + K + L+ + T P+ ++
Sbjct: 146 HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPV 205
Query: 715 GMVIYLFIIFTIFHIYFHGNPLFSA 739
G ++ I + ++ G F+
Sbjct: 206 GFYTDMWAIGVLGYVLLSGLSPFAG 230
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (205), Expect = 6e-18
Identities = 54/271 (19%), Positives = 100/271 (36%), Gaps = 45/271 (16%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVKTE--AYLLELDFFSKV 586
+ ++ +G G + G I V +K + ++ +E A + EL +++
Sbjct: 38 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97
Query: 587 -SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRK----------------TNTED 629
SH +V LLG C +L+++Y GDL + L K E+
Sbjct: 98 GSHENIVNLLGACTL-SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEE 156
Query: 630 DLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEV 687
DL L + L A A+G+ +L + VHRD+ A ++L+ V++ L+
Sbjct: 157 DLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLARD 213
Query: 688 CAQGGDAHQSRITR----------LLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNP-- 735
+ R L + + I L+ IF++ + G P
Sbjct: 214 IMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD 273
Query: 736 -LFSAIFNNHLNLSSRFGVKQQ-TTIIKLCV 764
F + N + F ++ I++ C
Sbjct: 274 ANFYKLIQNGFKMDQPFYATEEIYIIMQSCW 304
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.8 bits (201), Expect = 2e-17
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 29/173 (16%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVK--TEAYLLELDFFSKV 586
+ I G G +F+ G V +K + ++ + E ++
Sbjct: 14 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF 73
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLY-----------------RKTNTED 629
+ +V LLG L+++YM GDL+ L R +
Sbjct: 74 DNPNIVKLLG-VCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP 132
Query: 630 DLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
L +L IA A G++YL FVHRD+ + L+ + V++
Sbjct: 133 GPPPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIA 182
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.7 bits (201), Expect = 2e-17
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 540 NLIKNGHSGDLFRGILEG----GIPVVIKRIDLQS--VKTEAYLLELDFFSKVSHARLVP 593
+I GH G ++ G L I +K ++ + + +L E SH ++
Sbjct: 33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 594 LLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
LLG C+ E +V YM +GDL + + +T + + + A+G +
Sbjct: 93 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNET------HNPTVKDLIGFGLQVAKG---M 143
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ FVHRD+ A + +LD+KF V++
Sbjct: 144 KFLASKKFVHRDLAARNCMLDEKFTVKVA 172
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (198), Expect = 3e-17
Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 538 DANLIKNGHSGDLFRGILEG---GIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARL 591
+ + +G+ G + +G + V +K + ++ + L E + ++ + +
Sbjct: 11 EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70
Query: 592 VPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLS 651
V ++G C LV + G L+ L + + + +++ + G+
Sbjct: 71 VRMIGICEA--ESWMLVMEMAELGPLNKYLQQN-------RHVKDKNIIELVHQVSMGMK 121
Query: 652 YLHHECTLPFVHRDVQASSILLDDKFEVRL 681
YL FVHRD+ A ++LL + ++
Sbjct: 122 YLEESN---FVHRDLAARNVLLVTQHYAKI 148
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.8 bits (199), Expect = 3e-17
Identities = 34/212 (16%), Positives = 81/212 (38%), Gaps = 17/212 (8%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL-ELDFFSKVSHAR 590
++ I G SG ++ + + G V I++++LQ + ++ E+ + +
Sbjct: 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
+V L + +E ++V +Y+ G L+ + E + + L
Sbjct: 79 IVNYLDSYLV-GDELWVVMEYLAGGSLTDVVTETCMDEGQ--------IAAVCRECLQAL 129
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVR---LGSLSEVCAQGGDAHQSRITRLLRLPQ 707
+LH +HRD+++ +ILL V+ G +++ + T P+
Sbjct: 130 EFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPE 186
Query: 708 SSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
+ + G + ++ + + G P +
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLN 218
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.1 bits (197), Expect = 3e-17
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHAR 590
D+ + G G++ + V +K +D++ E E+ ++H
Sbjct: 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
+V GH N ++L +Y G+L + + + G+
Sbjct: 65 VVKFYGHR-REGNIQYLFLEYCSGGELFDRIEPD-------IGMPEPDAQRFFHQLMAGV 116
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
YLH HRD++ ++LLD++ +++
Sbjct: 117 VYLHGIG---ITHRDIKPENLLLDERDNLKIS 145
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.6 bits (196), Expect = 5e-17
Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 16/146 (10%)
Query: 545 GHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCM- 599
G +++G+ E + V + + + + + + E + + H +V
Sbjct: 20 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWES 79
Query: 600 --ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC 657
+ + LV + M +G L + L R + + +GL +LH
Sbjct: 80 TVKGKKCIVLVTELMTSGTLKTYLKRF-------KVMKIKVLRSWCRQILKGLQFLHTRT 132
Query: 658 TLPFVHRDVQASSILLDDK-FEVRLG 682
P +HRD++ +I + V++G
Sbjct: 133 P-PIIHRDLKCDNIFITGPTGSVKIG 157
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 80.9 bits (199), Expect = 6e-17
Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 16/205 (7%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL-ELDFFSKVSHARLVPLLGHC 598
+ G G + R G K + + + E+ S + H LV L
Sbjct: 33 ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 92
Query: 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECT 658
E +NE ++Y++M G+L + + N + ++ +GL ++H
Sbjct: 93 -EDDNEMVMIYEFMSGGELFEKVADEHN------KMSEDEAVEYMRQVCKGLCHMHENN- 144
Query: 659 LPFVHRDVQASSILLDDKFEVRLG----SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSS 714
+VH D++ +I+ K L L+ + T P+ +E
Sbjct: 145 --YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPV 202
Query: 715 GMVIYLFIIFTIFHIYFHGNPLFSA 739
G ++ + + +I G F
Sbjct: 203 GYYTDMWSVGVLSYILLSGLSPFGG 227
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.2 bits (195), Expect = 7e-17
Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEA----YLLELDFFSKVSHA 589
DF + G G+++ + + +K + ++ E++ S + H
Sbjct: 7 DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
++ L G+ + +L+ +Y P G + L + + D A
Sbjct: 67 NILRLYGYFHD-ATRVYLILEYAPLGTVYRELQKLSK-------FDEQRTATYITELANA 118
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
LSY H +HRD++ ++LL E+++
Sbjct: 119 LSYCHS---KRVIHRDIKPENLLLGSAGELKIA 148
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.7 bits (192), Expect = 1e-16
Identities = 64/267 (23%), Positives = 109/267 (40%), Gaps = 11/267 (4%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
++P + Q + L IS V S NLT L+L N L ++ L++
Sbjct: 25 AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 192 LSVLDLSRNSLTGNI-PTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL 250
L LDLS N+ ++ P +F L L +L + L P L+ LQYL + +N+L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 251 ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTV 310
+ DL +L L L N +S RGL SL + ++ N ++ + + F +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDL 200
Query: 311 SQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG--PLPNSRSNVNTSTVELNIS 368
+L + L N + P + L + L+ L ++ N + + + + S
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ----KFRGS 256
Query: 369 QNMFYGGLTPVLGRFRLVDLSGNYFEG 395
+ L L L L+ N +G
Sbjct: 257 SSEVPCSLPQRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 8e-14
Identities = 53/240 (22%), Positives = 81/240 (33%), Gaps = 5/240 (2%)
Query: 110 ADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLT 169
A + +L +L Q + + V P + L L
Sbjct: 49 AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS 229
+L+L GL P L+ L L L N+L +F L NL+ L + N ++
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
Query: 230 IPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289
L L L + N +A P DL L+ L L N+LS L LR+LQ
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 290 KFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTG 349
+ +N + P + LQ + P L L ++ N+ G
Sbjct: 229 YLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.002
Identities = 26/223 (11%), Positives = 60/223 (26%), Gaps = 31/223 (13%)
Query: 243 LNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ------------- 289
+ L ++P + + + L N +S + R R+L
Sbjct: 16 TSCPQQGL-QAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 290 -----------KFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLR 338
+ + +N ++ F + +L + L + G P + + L+
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 339 LLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV---LGRFRLVDLSGNYFEG 395
L + N ++ + + L + N L + L N
Sbjct: 133 YLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 396 RVPEYVHSNASSLDSNCLQNVPNQRTLVDCSSFYAARGLSFDN 438
P + N + + A + L ++
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.0 bits (189), Expect = 5e-16
Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 26/232 (11%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHA 589
DF ++ G + L IK ++ + + K E D S++ H
Sbjct: 9 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
V L + + + + Y NG+L + + S D
Sbjct: 69 FFVKLYFTFQD-DEKLYFGLSYAKNGELLKYIRKI-------GSFDETCTRFYTAEIVSA 120
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRL---- 705
L YLH + +HRD++ +ILL++ +++ ++ Q+R +
Sbjct: 121 LEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYV 177
Query: 706 -PQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA-----IFNNHLNLSSRF 751
P+ + S+ L+ + I + G P F A IF + L F
Sbjct: 178 SPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDF 229
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (189), Expect = 5e-16
Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 34/258 (13%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVKTE--AYLLELDFFSKV 586
+ + + G G ++ G+ +G V IK ++ + E +L E +
Sbjct: 21 KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF 80
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLY---RKTNTEDDLQSLDWITRLKIA 643
+ +V LLG + ++ + M GDL S L L +++A
Sbjct: 81 NCHHVVRLLGVV-SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA 139
Query: 644 IGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLL 703
A+G++YL+ FVHRD+ A + ++ + F V++G + + + L
Sbjct: 140 GEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGL 196
Query: 704 --------------RLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNP---LFSAIFNNHLN 746
S+ S G+V++ I T+ + G + + L
Sbjct: 197 LPVRWMSPESLKDGVFTTYSDVWSFGVVLW--EIATLAEQPYQGLSNEQVLRFVMEGGLL 254
Query: 747 LSSRFGVKQQTTIIKLCV 764
++++C
Sbjct: 255 DKPDNCPDMLFELMRMCW 272
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 8e-16
Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 30/220 (13%)
Query: 535 DFSDANLIKNGHSGDLFRGIL-----EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVS 587
+F ++ +G G +++G+ + IPV IK + + + L E + V
Sbjct: 10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVD 69
Query: 588 HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAA 647
+ + LLG C+ + L+ + MP G L + + L + A
Sbjct: 70 NPHVCRLLGICLT--STVQLITQLMPFGCLLDYVREHKDNIG------SQYLLNWCVQIA 121
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSRITRLLRL 705
+G++YL VHRD+ A ++L+ V++ L+++ + + ++
Sbjct: 122 KGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178
Query: 706 PQSSEQGSSGMV----------IYLFIIFTIFHIYFHGNP 735
+ E + + ++ + T + G P
Sbjct: 179 WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP 218
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.5 bits (190), Expect = 9e-16
Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 19/155 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAY-------LLELDFFSKV 586
DFS +I G G+++ + G +K +D + +K + + L S
Sbjct: 5 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646
+V + ++ + M GDL L + A
Sbjct: 65 DCPFIVCMSYAFHT-PDKLSFILDLMNGGDLHYHLSQHGVF-------SEADMRFYAAEI 116
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
GL ++H+ V+RD++ ++ILLD+ VR+
Sbjct: 117 ILGLEHMHNRF---VVYRDLKPANILLDEHGHVRI 148
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 75.9 bits (186), Expect = 1e-15
Identities = 53/250 (21%), Positives = 88/250 (35%), Gaps = 36/250 (14%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT----------EAYLLELDFF 583
++ ++ G S + R I +K ID+ + EA L E+D
Sbjct: 4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63
Query: 584 SKVS-HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKI 642
KVS H ++ L E FLV+ M G+L L K +L KI
Sbjct: 64 RKVSGHPNIIQLKDTY-ETNTFFFLVFDLMKKGELFDYLTEK-------VTLSEKETRKI 115
Query: 643 AIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSRIT 700
E + LH L VHRD++ +ILLDD ++L S G + T
Sbjct: 116 MRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGT 172
Query: 701 R------LLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA-----IFNNHLNLSS 749
++ + G + ++ I + G+P F + ++ +
Sbjct: 173 PSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNY 232
Query: 750 RFGVKQQTTI 759
+FG +
Sbjct: 233 QFGSPEWDDY 242
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.2 bits (187), Expect = 1e-15
Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 18/222 (8%)
Query: 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLG 596
+++ G ++ V IK I +++ K + E+ K+ H +V L
Sbjct: 15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDD 74
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
E +L+ + + G+L + K ++ + + YLH
Sbjct: 75 IY-ESGGHLYLIMQLVSGGELFDRIVEK-------GFYTERDASRLIFQVLDAVKYLHDL 126
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDAHQSRITRLLRLPQSSEQGSS 714
+ + LD+ ++ + LS++ G + T P+ Q
Sbjct: 127 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPY 186
Query: 715 GMVIYLFIIFTIFHIYFHGNPLF-----SAIFNNHLNLSSRF 751
+ + I I +I G P F + +F L F
Sbjct: 187 SKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEF 228
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (184), Expect = 3e-15
Identities = 28/221 (12%), Positives = 67/221 (30%), Gaps = 20/221 (9%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
+ G G + R + + K + ++ E+ + H ++ L
Sbjct: 12 DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESF- 70
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTL 659
E E ++++++ D+ + L+ + E L +LH
Sbjct: 71 ESMEELVMIFEFISGLDIFERINTSAF------ELNEREIVSYVHQVCEALQFLHS---H 121
Query: 660 PFVHRDVQASSILLDDKFEVRLG----SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSG 715
H D++ +I+ + + + G + P+ +
Sbjct: 122 NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVS 181
Query: 716 MVIYLFIIFTIFHIYFHGNPLFSA-----IFNNHLNLSSRF 751
++ + T+ ++ G F A I N +N F
Sbjct: 182 TATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTF 222
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.0 bits (181), Expect = 5e-15
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 541 LIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSVKT--EAYLLELDFFSKVSHARLVPL 594
I G GD+ +GI + V IK + + E +L E + H +V L
Sbjct: 14 CIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKL 73
Query: 595 LGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLH 654
+G E N +++ + G+L S L + SLD + + A + L+YL
Sbjct: 74 IGVITE--NPVWIIMELCTLGELRSFLQVRK------YSLDLASLILYAYQLSTALAYLE 125
Query: 655 HECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSRIT 700
+ FVHRD+ A ++L+ V+LG LS S+
Sbjct: 126 SKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGK 170
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (180), Expect = 5e-15
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 535 DFSDANLIKNGHSGDLFRGILEGG-----IPVVIKRIDLQSVKTE--AYLLELDFFSKVS 587
+ +I G G++++G+L+ +PV IK + + + +L E + S
Sbjct: 8 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS 67
Query: 588 HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAA 647
H ++ L G + ++ +YM NG L L K + + + G A
Sbjct: 68 HHNIIRLEGVISK-YKPMMIITEYMENGALDKFLREKDGE------FSVLQLVGMLRGIA 120
Query: 648 EGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSR 698
G+ + + +VHRD+ A +IL++ ++ LS V +A +
Sbjct: 121 AGM---KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT 170
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (181), Expect = 6e-15
Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 37/235 (15%)
Query: 540 NLIKNGHSGDLFRGILEG------GIPVVIKRIDLQSVKTE--AYLLELDFFSKVSHAR- 590
+ G G + G V +K + + +E A + EL + H
Sbjct: 19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQS---------LDWITRLK 641
+V LLG C + ++ ++ G+LS+ L K N + L +
Sbjct: 79 VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 138
Query: 642 IAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSRI 699
+ A+G+ +L +HRD+ A +ILL +K V++ L+ + D +
Sbjct: 139 YSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 195
Query: 700 TRL------------LRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFN 742
RL S+ S G++++ IF++ + G +
Sbjct: 196 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW--EIFSLGASPYPGVKIDEEFCR 248
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 73.0 bits (178), Expect = 1e-14
Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 18/213 (8%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHARLVPLLG 596
I G G +++ G +K+I L+ + E+ ++ H+ +V L
Sbjct: 8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
+ LV++++ + L+ +T + G++Y H
Sbjct: 68 VIHT-KKRLVLVFEHLDQDLKKLLDVCE-------GGLESVTAKSFLLQLLNGIAYCHD- 118
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG--SLSEVCAQGGDAHQSRITRLLRLPQSSEQGSS 714
+HRD++ ++L++ + E+++ L+ + I L GS
Sbjct: 119 --RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSK 176
Query: 715 --GMVIYLFIIFTIFHIYFHGNPLFSAIFNNHL 745
I ++ + IF +G PLF +
Sbjct: 177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ 209
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 1e-14
Identities = 35/246 (14%), Positives = 84/246 (34%), Gaps = 29/246 (11%)
Query: 545 GHSGDLFRGILEGGIPVVIKRIDLQSVKTEA--YLLELDFFSKVSHARLVPLLGHCMERE 602
+ L + V +K + + + + + E++ + + + L ++
Sbjct: 32 AEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 91
Query: 603 NEKFLVYKYMPNGDLSSSL---------YRKTNTEDDLQSLDWITRLKIAIGAAEGLSYL 653
+++ +Y G+L L Y + + + L + A A G+ YL
Sbjct: 92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL 151
Query: 654 HHECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDAHQSRITRLLRLPQSSEQ 711
+ +HRD+ A ++L+ + +++ L+ ++ RL + E
Sbjct: 152 ASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEA 208
Query: 712 GSSGMV----------IYLFIIFTIFHIYFHGNP---LFSAIFNNHLNLSSRFGVKQQTT 758
+ + L+ IFT+ + G P LF + H +
Sbjct: 209 LFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYM 268
Query: 759 IIKLCV 764
+++ C
Sbjct: 269 MMRDCW 274
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 78/331 (23%), Positives = 117/331 (35%), Gaps = 34/331 (10%)
Query: 49 TELAALFELRSSLG--LRRRDWPRKVDPC-LVWNGVRCQNGSVVGINISGFRRTRLGSQN 105
+ AL +++ LG W D C W GV C +
Sbjct: 6 QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTY--------------- 50
Query: 106 PRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSC-SISGVIPFSLGN 164
+ +L + P IP L LP L L + ++ G IP ++
Sbjct: 51 ---------RVNNL-DLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224
LT L LY++ ++G IP L Q+ L LD S N+L+G +P S L NL + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284
++G+IP G+ SKL + + + +L +DLS N L G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG- 218
Query: 285 LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344
I S + L + LR N G P L + L L++S
Sbjct: 219 -SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 345 NNFTGPLPNSRSNVNTSTVELNISQNMFYGG 375
NN G +P + + N G
Sbjct: 278 NNLCGEIPQGGNLQRFD--VSAYANNKCLCG 306
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 66.3 bits (160), Expect = 2e-12
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 193 SVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS 252
+ LDL N + G +P LK L SL++S N L G IP G L + +NN
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC 305
Query: 253 SIP 255
P
Sbjct: 306 GSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 65.9 bits (159), Expect = 3e-12
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN- 224
NL L L +N + GT+P L QL L L++S N+L G IP G L+ ++N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
Query: 225 YLTGSIPP 232
L GS P
Sbjct: 303 CLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 65.2 bits (157), Expect = 5e-12
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 11/271 (4%)
Query: 151 SCSISGVIPFSLGNLTNLTSLYLSDNGLTG--TIPSSLGQLSVLSVLDLSRN-SLTGNIP 207
+ + GV+ + + +L LS L IPSSL L L+ L + +L G IP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 208 TSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDL 267
+ L L L I+ ++G+IP L + L L+ S N+L+ ++P + L +LV +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 268 DLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPP 327
N +SG++P L + + L+ + PT + L + + +
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISR---NRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 328 PDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVLGRF---R 384
+ I + + ++ + L++ N YG L L +
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 385 LVDLSGNYFEGRVPEYVHSNASSLDSNCLQN 415
+++S N G +P+ N D + N
Sbjct: 272 SLNVSFNNLCGEIPQG--GNLQRFDVSAYAN 300
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.4 bits (155), Expect = 1e-11
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 148 DLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIP 207
DLR+ I G +P L L L SL +S N L G IP G L V + N P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.8 bits (143), Expect = 4e-10
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 214 KNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273
KNL+ LD+ +N + G++P GL L L LNVS N+L IP Q G+L + N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
Query: 274 LSGSVP 279
P
Sbjct: 303 CLCGSP 308
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (176), Expect = 2e-14
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 19/154 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSVKT----EAYLLELDFFSKV 586
D + +G G + RG + + V +K + + + ++ E++ +
Sbjct: 9 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 68
Query: 587 SHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGA 646
H L+ L G + +V + P G L L + T + A+
Sbjct: 69 DHRNLIRLYGVVLT--PPMKMVTELAPLGSLLDRLRKHQG------HFLLGTLSRYAVQV 120
Query: 647 AEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680
AEG+ YL + F+HRD+ A ++LL + V+
Sbjct: 121 AEGMGYLESKR---FIHRDLAARNLLLATRDLVK 151
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (178), Expect = 3e-14
Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 20/215 (9%)
Query: 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVP 593
++D +I NG G +++ L + G V IK++ EL K+ H +V
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNIVR 77
Query: 594 LLGHCMERENEK-----FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE 648
L +K LV Y+P + + Q+L I
Sbjct: 78 LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAK----QTLPVIYVKLYMYQLFR 133
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDKFE---VRLGSLSEVCAQGGDAHQSRITRLLRL 705
L+Y+H HRD++ ++LLD + ++ +G +R R
Sbjct: 134 SLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRA 190
Query: 706 PQSSEQGSS-GMVIYLFIIFTIFHIYFHGNPLFSA 739
P+ + I ++ + G P+F
Sbjct: 191 PELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPG 225
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.7 bits (172), Expect = 9e-14
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 23/222 (10%)
Query: 532 ATGDFSDANLIKNGHSGDLFRG--ILEGGIPVVIKRIDLQSVKTEAYLL------ELDFF 583
A + I G G +F+ + GG V +KR+ +Q+ + L L
Sbjct: 5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64
Query: 584 SKVSHARLVPLLGHCM----ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITR 639
H +V L C +RE + LV++++ + + T
Sbjct: 65 ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPE------PGVPTETI 118
Query: 640 LKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR--LGSLSEVCAQGGDAHQS 697
+ GL +LH VHRD++ +IL+ +++ L+ + +
Sbjct: 119 KDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSV 175
Query: 698 RITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
+T R P+ Q S + L+ + IF F PLF
Sbjct: 176 VVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG 217
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (169), Expect = 3e-13
Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 26/239 (10%)
Query: 522 ESFTYQQLLAATGDFSDA----NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---T 573
F Q++ + + +G G + + G V IK++
Sbjct: 2 SGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFA 61
Query: 574 EAYLLELDFFSKVSHARLVPLLGHCMERE-----NEKFLVYKYMPNGDLSSSLYRKTNTE 628
+ EL + H ++ LL E + +LV +M G L +
Sbjct: 62 KRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM--GTDLGKLMKH---- 115
Query: 629 DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688
+ L + +GL Y+H +HRD++ ++ +++ E+++
Sbjct: 116 ---EKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLAR 169
Query: 689 AQGGDAHQSRITRLLRLP-QSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746
+ +TR R P + ++ + I G LF +
Sbjct: 170 QADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQL 228
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.2 bits (166), Expect = 7e-13
Identities = 29/209 (13%), Positives = 66/209 (31%), Gaps = 22/209 (10%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHC 598
++ G +G + + +K + E++ + S +V ++
Sbjct: 19 VLGLGINGKVLQIFNKRTQEKFALKMLQ----DCPKARREVELHWRASQCPHIVRIVDVY 74
Query: 599 MERENEK---FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH 655
+ +V + + G+L S + + + Q+ +I E + YLH
Sbjct: 75 ENLYAGRKCLLIVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHS 129
Query: 656 ECTLPFVHRDVQASSILLDDKFE-----VRLGSLSEVCAQGGDAHQSRITRLLRLPQSSE 710
+ HRDV+ ++L K + ++ T P+
Sbjct: 130 ---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG 186
Query: 711 QGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
++ + I +I G P F +
Sbjct: 187 PEKYDKSCDMWSLGVIMYILLCGYPPFYS 215
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.6 bits (164), Expect = 9e-13
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
I +G GD++ G + G V IK +++ K +E + + +P + C
Sbjct: 14 KIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGVGIPTIRWCG 72
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTL 659
+ +V + + + + T L +A + Y+H +
Sbjct: 73 AEGDYNVMVMELLGPSLEDLFNFCS-------RKFSLKTVLLLADQMISRIEYIHSKN-- 123
Query: 660 PFVHRDVQASSILLDDK 676
F+HRDV+ + L+
Sbjct: 124 -FIHRDVKPDNFLMGLG 139
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.4 bits (164), Expect = 1e-12
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 29/233 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHA 589
DF + G G + G +K + + V + E E S V+H
Sbjct: 5 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHP 64
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
++ + G + + F++ Y+ G+L S L + AAE
Sbjct: 65 FIIRMWGTFQD-AQQIFMIMDYIEGGELFSLLRKS----------QRFPNPVAKFYAAEV 113
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQ-- 707
L + + ++RD++ +ILLD +++ + T P+
Sbjct: 114 CLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVV 173
Query: 708 -------SSEQGSSGMVIYLFIIFTIFHIYFHGNP--LFSAIFNNHLNLSSRF 751
S + S G++IY + + ++ N + I N L F
Sbjct: 174 STKPYNKSIDWWSFGILIY--EMLAGYTPFYDSNTMKTYEKILNAELRFPPFF 224
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 3e-12
Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 18/213 (8%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHAR 590
+F I G G +++ G V +K+I L + + E+ +++H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
+V LL + EN+ +LV++++ L + +GL
Sbjct: 63 IVKLLD-VIHTENKLYLVFEFLHQDLKKFMDAS------ALTGIPLPLIKSYLFQLLQGL 115
Query: 651 SYLHHECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDAHQSRITRLLRL--P 706
++ H +HRD++ ++L++ + ++L L+ + + L
Sbjct: 116 AFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPE 172
Query: 707 QSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
+ ++ + IF LF
Sbjct: 173 ILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPG 205
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (160), Expect = 4e-12
Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 18/220 (8%)
Query: 528 QLLAATGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT--EAYLLELDFFS 584
Q+ +++ + I G G + + V IK+I +T + L E+
Sbjct: 2 QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL 61
Query: 585 KVSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI 644
+ H ++ + + + Y+ + + LY+ T Q L
Sbjct: 62 RFRHENIIGINDIIRA-PTIEQMKDVYLVTHLMGADLYKLLKT----QHLSNDHICYFLY 116
Query: 645 GAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDAHQSRITRL 702
GL Y+H +HRD++ S++LL+ ++++ L+ V D +
Sbjct: 117 QILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYV 173
Query: 703 LRLP-----QSSEQGSSGMVIYLFIIFTIFHIYFHGNPLF 737
I ++ + I P+F
Sbjct: 174 ATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF 213
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 65.1 bits (158), Expect = 4e-12
Identities = 20/157 (12%), Positives = 58/157 (36%), Gaps = 18/157 (11%)
Query: 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLL----ELDFFSKVS 587
+ + ++ G ++ L V +K + + ++ L E + ++
Sbjct: 6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65
Query: 588 HARLVPLLGHCMERENEK---FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAI 644
H +V + ++V +Y+ L ++ + + +++
Sbjct: 66 HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE-------GPMTPKRAIEVIA 118
Query: 645 GAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681
A + L++ H +HRDV+ ++I++ V++
Sbjct: 119 DACQALNFSHQ---NGIIHRDVKPANIMISATNAVKV 152
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 64.1 bits (155), Expect = 1e-11
Identities = 43/255 (16%), Positives = 94/255 (36%), Gaps = 28/255 (10%)
Query: 500 GPVPAGSSLPPPGASINFTNLGESFTYQQLLAATGDFSDANLIK---NGHSGDLFRGI-L 555
GPVP+ + + +N E + Y+ + G+ D L++ G ++F I +
Sbjct: 1 GPVPSRARVY---TDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINI 57
Query: 556 EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMERENEK-FLVYKYMP 613
VV+K + VK + E+ + ++ L + + LV++++
Sbjct: 58 TNNEKVVVKILK--PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVN 115
Query: 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673
N D + Q+L + L Y H +HRDV+ ++++
Sbjct: 116 NTDF----------KQLYQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMI 162
Query: 674 D-DKFEVRLGS--LSEVCAQGGDAHQSRITRLLRLP-QSSEQGSSGMVIYLFIIFTIFHI 729
D + ++RL L+E G + + +R + P + + ++ + +
Sbjct: 163 DHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLAS 222
Query: 730 YFHGNPLFSAIFNNH 744
F +N+
Sbjct: 223 MIFRKEPFFHGHDNY 237
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 1e-11
Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 22/211 (10%)
Query: 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK------TEAYLLELDFFSKVSHARLV 592
+ + G +++ V IK+I L L E+ ++SH ++
Sbjct: 4 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63
Query: 593 PLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSY 652
LL ++ LV+ +M L + +GL Y
Sbjct: 64 GLLD-AFGHKSNISLVFDFMETDLEVIIKDNS-------LVLTPSHIKAYMLMTLQGLEY 115
Query: 653 LHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQ- 711
LH +HRD++ +++LLD+ ++L + G + R ++ E
Sbjct: 116 LHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELL 172
Query: 712 ---GSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
G+ + ++ + I P
Sbjct: 173 FGARMYGVGVDMWAVGCILAELLLRVPFLPG 203
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.1 bits (155), Expect = 2e-11
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 16/210 (7%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSV----KTEAYLLELDFFSKVSHA 589
F + G G + E G +K +D Q V + E L E V+
Sbjct: 42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
LV L + N V +Y+ G++ S L R A
Sbjct: 102 FLVKLEFSFKDNSNLYM-VMEYVAGGEMFSHLRRI-------GRFSEPHARFYAAQIVLT 153
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSS 709
YLH ++RD++ ++L+D + +++ G T P+
Sbjct: 154 FEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEII 210
Query: 710 EQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
+ + + + + G P F A
Sbjct: 211 LSKGYNKAVDWWALGVLIYEMAAGYPPFFA 240
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (154), Expect = 2e-11
Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 20/214 (9%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT----EAYLLELDFFSKV-SH 588
DF ++ G G +F + IK + V E ++E S H
Sbjct: 3 DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62
Query: 589 ARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAE 648
L + +EN F V +Y+ GDL + D A
Sbjct: 63 PFLTHMFCTFQTKEN-LFFVMEYLNGGDLMYHIQSC-------HKFDLSRATFYAAEIIL 114
Query: 649 GLSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRITRLLRL 705
GL +LH + V+RD++ +ILLD +++ G E + T
Sbjct: 115 GLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIA 171
Query: 706 PQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
P+ + + + + G F
Sbjct: 172 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG 205
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 62.1 bits (150), Expect = 5e-11
Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 12/145 (8%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCM 599
I G G +F G L V IK +S E + ++ +P + +
Sbjct: 12 RIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFG 70
Query: 600 ERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTL 659
+ LV + G L + T A + +H
Sbjct: 71 QEGLHNVLVIDLL--GPSLEDLLDLCG-----RKFSVKTVAMAAKQMLARVQSIHE---K 120
Query: 660 PFVHRDVQASSILLDDKFEVRLGSL 684
V+RD++ + L+ +
Sbjct: 121 SLVYRDIKPDNFLIGRPNSKNANMI 145
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 62.5 bits (150), Expect = 6e-11
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 149 LRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPT 208
+ S I +L L +S+N L +P+ +L L S N L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVP- 320
Query: 209 SFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQ 241
L +NL L + N L P ++ L+
Sbjct: 321 --ELPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 172 YLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIP 231
N + I S L L++S N L +P L L S N+L +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP 320
Query: 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSL 264
L+ L+V N L P ++ L
Sbjct: 321 E---LPQNLKQLHVEYNPL-REFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 224 NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELR 283
N + I L+ LNVSNN L +PA L L S N L+ VP +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP---RLERLIASFNHLA-EVPELPQ 324
Query: 284 GLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQI 315
L+ L + N L ++ +V L++
Sbjct: 325 NLKQLH---VEYNPLRE--FPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.0 bits (102), Expect = 5e-05
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 212 LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSM 271
L + L++++ L+ S+P L+ L S NSL + +P L SL+ + ++
Sbjct: 36 LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSL-TELPELPQSLKSLLVDNNNL 90
Query: 272 NSLSGSVPS 280
+LS P
Sbjct: 91 KALSDLPPL 99
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 246 SNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVN 305
N+ ++ I + SL +L++S N L +P+ L L S N
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL--------IASFNHLAE 318
Query: 306 LFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+ L+ + + N PD+ S+ LR+
Sbjct: 319 VPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251
L+L+ L+ ++P L +L SL S N LT +P +L L N + +L+
Sbjct: 40 AHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94
Query: 252 SSIP 255
P
Sbjct: 95 DLPP 98
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSV 191
+P + L+ L ++ V NL L++ N L P +
Sbjct: 298 ELPALPPR----LERLIASFNHLAEVPEL----PQNLKQLHVEYNPLR-EFPDIPESVED 348
Query: 192 LSV 194
L +
Sbjct: 349 LRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.002
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT 203
L+L + +S +P +L SL S N LT +P L L V + + +L+
Sbjct: 40 AHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94
Query: 204 GNIP 207
P
Sbjct: 95 DLPP 98
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.3 bits (87), Expect = 0.003
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 269 LSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP 328
+N+ S + S SL++ + NN L L +L+ ++ N P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPE 321
Query: 329 DVLWSMPQLRLLDISRNNFTGPLPNSRSNV 358
L+ L + N P+ +V
Sbjct: 322 ----LPQNLKQLHVEYNPLRE-FPDIPESV 346
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 8e-11
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 24/230 (10%)
Query: 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAY----LLELDFFSKVSHA 589
DF L+ G G + G +K + + + + + E H
Sbjct: 6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65
Query: 590 RLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEG 649
L L + + + V +Y G+L L R+ T + AE
Sbjct: 66 FLTALK-YAFQTHDRLCFVMEYANGGELFFHLSRE----------RVFTEERARFYGAEI 114
Query: 650 LSYLHHECTLPFVHRDVQASSILLDDKFEVRL---GSLSEVCAQGGDAHQSRITRLLRLP 706
+S L + + V+RD++ +++LD +++ G E + G T P
Sbjct: 115 VSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP 174
Query: 707 QSSEQGSSGMVIYLFIIFTIFHIYFHGNPLF-----SAIFNNHLNLSSRF 751
+ E G + + + + + G F +F L RF
Sbjct: 175 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (147), Expect = 1e-10
Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHA 589
+ I G G++F+ + G V +K++ +++ K L E+ + H
Sbjct: 10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69
Query: 590 RLVPLLGHC-------MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKI 642
+V L+ C + +LV+ + + +L I R+
Sbjct: 70 NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKF-----TLSEIKRVMQ 124
Query: 643 AIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
+ L+ L++ +HRD++A+++L+ ++L
Sbjct: 125 ML-----LNGLYYIHRNKILHRDMKAANVLITRDGVLKLA 159
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 2e-10
Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 19/157 (12%)
Query: 535 DFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQSVK-----TEAYLLELDFFSK 585
+F ++ G G +F + G +K + ++ TE E
Sbjct: 25 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 84
Query: 586 VSHARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIG 645
+ + + L + + E + L+ Y+ G+L + L ++ + T ++ I
Sbjct: 85 IRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR----------ERFTEHEVQIY 134
Query: 646 AAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682
E + L H L ++RD++ +ILLD V L
Sbjct: 135 VGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLT 171
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (143), Expect = 3e-10
Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 26/227 (11%)
Query: 541 LIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYL-------LELDFFSKVS--HAR 590
L+ +G G ++ GI + +PV IK ++ + L +E+ KVS +
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70
Query: 591 LVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGL 650
++ LL + L+ + + +L E +
Sbjct: 71 VIRLLDWFER-PDSFVLILERPEPVQDLFDFITER------GALQEELARSFFWQVLEAV 123
Query: 651 SYLHHECTLPFVHRDVQASSILLD-DKFEVRLGSLSEVCAQGGDAHQSRI-TRLLRLP-Q 707
+ H+ +HRD++ +IL+D ++ E++L + TR+ P
Sbjct: 124 RHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEW 180
Query: 708 SSEQGSSGMVIYLFIIFTIFHIYFHGNPLF---SAIFNNHLNLSSRF 751
G ++ + + + G+ F I + R
Sbjct: 181 IRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV 227
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (139), Expect = 7e-10
Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 7/206 (3%)
Query: 161 SLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220
+ + + + LT +P L + ++L LS N L + L+ L+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPS 280
+ LT G TL L L++S+N L S V S + +
Sbjct: 62 LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 281 ELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLL 340
+ ++ GN L L +L+ + L N T P +L + L L
Sbjct: 120 LRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 341 DISRNNFTGPLPNSRSNVNTSTVELN 366
+ N+ + L+
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLH 203
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 8/208 (3%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
++ + ++ +++ +P L + T L+LS+N L ++L + L+ L+L R
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
LT L L +LD+S N S+P TL L L+VS N L S L
Sbjct: 65 AELTKLQVDGT--LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 260 DLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLR 319
L L +L L N L P L L+K + NN L+ L L + L ++L+
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQ 180
Query: 320 QNGFTGPPPDVLWSMPQLRLLDISRNNF 347
+N P + L + N +
Sbjct: 181 ENSLYTIPKG-FFGSHLLPFAFLHGNPW 207
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.9 bits (141), Expect = 8e-10
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 17/210 (8%)
Query: 545 GHSGDLFRGI-LEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN 603
GH ++ + V +K + V TEA E+ +V+ A
Sbjct: 24 GHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHIL 83
Query: 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSL--------DWITRLKIAIGAAEGLSYLHH 655
+ + + + + + E+ L + I +I+ GL Y+H
Sbjct: 84 KLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR 143
Query: 656 ECTLPFVHRDVQASSILLD------DKFEVRLGSLSEVCAQGGDAHQSRITRLLRLPQSS 709
C +H D++ ++L++ + ++++ L C S TR R P+
Sbjct: 144 RC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVL 201
Query: 710 EQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739
G ++ + G+ LF
Sbjct: 202 LGAPWGCGADIWSTACLIFELITGDFLFEP 231
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.8 bits (140), Expect = 1e-09
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 167 NLTSLYLSDNGLTGT-IPSSLGQLSVLSVLDLSRNSLTG----NIPTSFGLLKNLSSLDI 221
++ SL + L+ L L V+ L LT +I ++ + L+ L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 222 SSNYLTGSIPPGLGTL-----SKLQYLNVSNN 248
SN L + K+Q L++ N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (138), Expect = 2e-09
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 132 SIPDWLGQQLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGTIPSSLG 187
+ LGQ L+ L L C +S + +L +L L LS+N L L
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 188 Q-----LSVLSVLDLSRNSLTGNIPTSF-GLLKNLSSLDISS 223
+ +L L L + + L K+ SL + S
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (133), Expect = 9e-09
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 192 LSVLDLSRNSLTGN-IPTSFGLLKNLSSLDISSNYLTG----SIPPGLGTLSKLQYLNVS 246
+ LD+ L+ LL+ + + LT I L L LN+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 247 NNSLASSIPAQLGDL-----DSLVDLDLSMN 272
+N L + + L L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 215 NLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNNSL----ASSIPAQLGDLDSLVDLDL 269
++ SLDI L+ + L L + Q + + + L I + L +L +L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 270 SMNSLSGSVPSEL 282
N L +
Sbjct: 63 RSNELGDVGVHCV 75
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 164 NLTNLTSLYLSDNGLTGT----IPSSLGQLSVLSVLDLSRNSLTGNIPTSFG-----LLK 214
+ L L+L+D ++ + + ++L L LDLS N L
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 215 NLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL 250
L L + Y + + L L K SL
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK------DKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (122), Expect = 2e-07
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 175 DNGLTGTIPSSLGQLSVLSVLDLSRNSLTGN----IPTSFGLLKNLSSLDISSNYLTGSI 230
D G+ SVL VL L+ ++ + + + +L LD+S+N L +
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413
Query: 231 PPGLGT-----LSKLQYLNVSNNSLASSIPAQLGDL 261
L L+ L + + + + +L L
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (119), Expect = 4e-07
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 12/94 (12%)
Query: 114 VNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGV----IPFSLGNLTNLT 169
+++ L + L + L L Q + L C ++ I +L L
Sbjct: 2 LDIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58
Query: 170 SLYLSDNGLTGTIPSSLGQL-----SVLSVLDLS 198
L L N L + Q + L L
Sbjct: 59 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (115), Expect = 1e-06
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 214 KNLSSLDISSNYLTG----SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGD-----LDSL 264
L L ++ ++ S+ L L+ L++SNN L + QL + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 265 VDLDLSMNSLSGSVPSELRGLR 286
L L S + L+ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 287 SLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG----PPPDVLWSMPQLRLLDI 342
+Q I LS L P + Q Q++ L G T L P L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 343 SRNNFTG----PLPNSRSNVNTSTVELNISQNMFY 373
N + + +L++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 0.001
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 263 SLVDLDLSMNSLSG----SVPSELRGLRSLQKFVIGNNFLSGN----LSVNLFPTVSQLQ 314
L L L+ +S S+ + L SL++ + NN L L ++ L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 315 IIVLRQNGFTGPPPDVLWSM----PQLRLL 340
+VL ++ D L ++ P LR++
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.3 bits (130), Expect = 1e-09
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSI 230
L+L+ LT + L QL +++ LDLS N L P + L+ L L S N L
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE--N 57
Query: 231 PPGLGTLSKLQYLNVSNNSLAS-SIPAQLGDLDSLVDLDLSMNSLSG 276
G+ L +LQ L + NN L + L LV L+L NSL
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.9 bits (116), Expect = 1e-07
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 241 QYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300
+ L++++ L ++ L L + LDLS N L P+ L +L+ + +
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNA 54
Query: 301 NLSVNLFPTVSQLQIIVLRQNGFTG-PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNV 358
+V+ + +LQ ++L N L S P+L LL++ N+ + +
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERL 112
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.6 bits (115), Expect = 1e-07
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASS 253
VL L+ LT + L ++ LD+S N L +PP L L L+ L S+N+L +
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV 58
Query: 254 IPAQLGDLDSLVDLDLSMNSL-SGSVPSELRGLRSLQKFVIGNNFLSGNLS-----VNLF 307
+L L +L L N L + L L + N L +
Sbjct: 59 DGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 308 PTVSQL 313
P+VS +
Sbjct: 117 PSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 139 QQLPTLQALDLRSCSISGVIPFSLGNLTNL----------------------TSLYLSDN 176
+QL + LDL + + P +L L L L L +N
Sbjct: 17 EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75
Query: 177 GLTGT-IPSSLGQLSVLSVLDLSRNSLT---GNIPTSFGLLKNLSSL 219
L + L L +L+L NSL G +L ++SS+
Sbjct: 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 2e-09
Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 25/207 (12%)
Query: 545 GHSGDLFRGI-LEGGIPVVIKRIDLQSVKT-------EAYLLELDFFSKVSHARLVPLLG 596
G + + G+ K I + K+ E E+ ++ H ++ L
Sbjct: 21 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHE 80
Query: 597 HCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
E + + L+ + + G+L L K +SL + G+ ++
Sbjct: 81 VY-ENKTDVILILELVAGGELFDFLAEK-------ESLTEEEATEFLKQILNGV---YYL 129
Query: 657 CTLPFVHRDVQASSILLDDKFEVRLG------SLSEVCAQGGDAHQSRITRLLRLPQSSE 710
+L H D++ +I+L D+ + L+ G + T P+
Sbjct: 130 HSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVN 189
Query: 711 QGSSGMVIYLFIIFTIFHIYFHGNPLF 737
G+ ++ I I +I G F
Sbjct: 190 YEPLGLEADMWSIGVITYILLSGASPF 216
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (133), Expect = 5e-09
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 145 QALDLRSCSISGVIPFSLGNLT--NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202
Q LDL ++ P G L + + + + + + +DLS + +
Sbjct: 3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58
Query: 203 TGN-IPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLN 244
+ + L +L + L+ I L S L LN
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 17/98 (17%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSL-ASS 253
LDL+ +L ++ L + + + +++ + + ++Q++++SN+ + S+
Sbjct: 5 LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62
Query: 254 IPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
+ L L +L L LS + + L +L +
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 37/238 (15%)
Query: 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQ 145
G ++ + FR R P + + H+ + S ++ S + Q LQ
Sbjct: 18 GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVIEVSTLHGILSQCSKLQ 74
Query: 146 ALDLRSCSISGVIPFSLGNLTNLTSL--------------------------------YL 173
L L +S I +L +NL L
Sbjct: 75 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134
Query: 174 SDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL-TGSIPP 232
++ + + ++ L++ +N ++ T NL LD+S + +
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194
Query: 233 GLGTLSKLQYLNVSN-NSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289
L+ LQ+L++S + +LG++ +L L + G++ L LQ
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 151 SCSISGVIPFSLGNLTNLTSLYLSD-NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTS 209
S + L L L LS + LG++ L L + G +
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL- 243
Query: 210 FGLLKNLSSLDISSNYLTGSIPPGLGT 236
L + L L I+ ++ T P +G
Sbjct: 244 --LKEALPHLQINCSHFTTIARPTIGN 268
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 7e-09
Identities = 36/240 (15%), Positives = 75/240 (31%), Gaps = 31/240 (12%)
Query: 540 NLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVKT---EAYLLELDFFSKVSHARLVPLL 595
I G G +F+ E V +KR+ L + L E+ ++ H +V L
Sbjct: 8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 596 GHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH 655
+ + + + ++S + L L
Sbjct: 68 DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSF-----------LFQLLKGLGF 116
Query: 656 ECTLPFVHRDVQASSILLDDKFEVRLGS--LSEVCAQGGDAHQSRITRLLRLP------- 706
+ +HRD++ ++L++ E++L + L+ + + + L P
Sbjct: 117 CHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA 176
Query: 707 ----QSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFGVKQQTTIIKL 762
S + S+G + + F GN + L +Q ++ KL
Sbjct: 177 KLYSTSIDMWSAGCIFA--ELANAGRPLFPGNDVDD-QLKRIFRLLGTPTEEQWPSMTKL 233
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.5 bits (125), Expect = 2e-08
Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 9/139 (6%)
Query: 540 NLIKNGHSGDLFRGILEGGIPVVIK--RIDLQSVKTEAYLLELDFFSKVSHARLVPLLGH 597
L+ G +F E V+K ++ S K + A
Sbjct: 6 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65
Query: 598 -CMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHE 656
+++ + Y G+ ++ + +L + ++ E ++ +H
Sbjct: 66 RALQKLQGLAVPKVYAWEGN---AVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR 122
Query: 657 CTLPFVHRDVQASSILLDD 675
VH D+ ++L+ +
Sbjct: 123 G---IVHGDLSQYNVLVSE 138
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 2e-08
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 24/204 (11%)
Query: 545 GHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHC-- 598
G G + V IK++ + EL V+H ++ LL
Sbjct: 28 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTP 87
Query: 599 ---MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHH 655
+E + +LV + M + LD + G+ +LH
Sbjct: 88 QKTLEEFQDVYLVMELMDANLC----------QVIQMELDHERMSYLLYQMLCGIKHLHS 137
Query: 656 ECTLPFVHRDVQASSILLDDKFEVR--LGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGS 713
+HRD++ S+I++ ++ L+ +TR R P+
Sbjct: 138 AG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG 194
Query: 714 SGMVIYLFIIFTIFHIYFHGNPLF 737
+ ++ + I LF
Sbjct: 195 YKENVDIWSVGCIMGEMVRHKILF 218
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 19/206 (9%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
F L N + + +T T+ + L ++ L +T I L NL L
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
++ N +T P T L+ + S+I + + +
Sbjct: 69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 280 SELRGLRSLQKFVIGNNFL-------------SGNLSVNLFPTVSQLQIIVLRQNGFTGP 326
S L+ L + + L + + +S+L + N +
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188
Query: 327 PPDVLWSMPQLRLLDISRNNFTGPLP 352
P L S+P L + + N + P
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP 212
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 49.3 bits (116), Expect = 4e-07
Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 23/218 (10%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199
L + +++ + + +L +T+L G+T + L+ L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLG 259
N +T P L + +I + + + + L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 260 DLDSLVDLDLSMNSL--------------SGSVPSELRGLRSLQKFVIGNNFLSGNLSVN 305
L ++ +++ L S + L L L +N +S ++
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD---IS 189
Query: 306 LFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
++ L + L+ N + P L + L ++ ++
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.4 bits (106), Expect = 8e-06
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 192 LSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247
L+ L N ++ P L NL + + +N ++ P L S L + ++N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 140 QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSD 175
LP L + L++ IS V P L N +NL + L++
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 229 SIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSL 288
S L LSKL L +N ++ P L L +L+++ L N +S P L +L
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219
Query: 289 QKFVIGN 295
+ N
Sbjct: 220 FIVTLTN 226
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 4e-07
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 113 LVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGV--IPFSLGNLTNLTS 170
LV N + + + + +P L +L+L + + + + + NL
Sbjct: 38 LVAQNIDVVLNRRSSMA--ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI 95
Query: 171 LYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG-------LLKNLSSLD 220
L LS N L + L L L NSL+ L LD
Sbjct: 96 LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 5/124 (4%)
Query: 182 IPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQ 241
+ + + S L L L+ S+ ++ + +L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELL 68
Query: 242 YLNVSNNSL--ASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLS 299
LN+SNN L + + + +L L+LS N L + L++ + N LS
Sbjct: 69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128
Query: 300 GNLS 303
Sbjct: 129 DTFR 132
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 48.6 bits (114), Expect = 5e-07
Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 9/187 (4%)
Query: 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSF-GLLKNLSSLDISSNYLT 227
T++ + GL IP + + L L+ N L G L +L L++ N LT
Sbjct: 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 228 GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRS 287
G P S +Q L + N + L L L+L N +S +P L S
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 288 LQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNF 347
L + +N + N + F + + L P + +++ D+ + F
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKK--SLNGGAARCGAPSKVRD---VQIKDLPHSEF 182
Query: 348 TGPLPNS 354
NS
Sbjct: 183 KCSSENS 189
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 151 SCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSF 210
I + L L +L L DN ++ +P S L+ L+ L+L+ N N ++
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
Query: 211 GLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIP 255
+ L ++ P + +Q ++ ++ S
Sbjct: 147 -FAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSE 187
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 36.7 bits (83), Expect = 0.004
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 17/189 (8%)
Query: 151 SCSISGV---------IPFSLGNLTNLTSLYLSDNGLTGTI-PSSLGQLSVLSVLDLSRN 200
C + V IP + + T L L+DN L G+L L L+L RN
Sbjct: 7 HCEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64
Query: 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGD 260
LTG P +F ++ L + N + L +L+ LN+ +N ++ +P
Sbjct: 65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124
Query: 261 LDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQ 320
L+SL +L+ + + L +++ + G V +QI L
Sbjct: 125 LNSLT-----SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPH 179
Query: 321 NGFTGPPPD 329
+ F +
Sbjct: 180 SEFKCSSEN 188
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 3e-06
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 8/151 (5%)
Query: 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPA 256
L+ L + LD+ + I TL + ++ S+N + +
Sbjct: 3 LTAE-LIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-RKLDG 58
Query: 257 QLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQII 316
L L L ++ N + + L L + ++ NN L ++ ++ L +
Sbjct: 59 F-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117
Query: 317 VLRQNGFTGPP---PDVLWSMPQLRLLDISR 344
+ +N T V++ +PQ+R+LD +
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 161 SLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220
N L L + I + L +D S N + F LL+ L +L
Sbjct: 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69
Query: 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS 252
+++N + L L L ++NNSL
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSLVE 101
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.002
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 7/134 (5%)
Query: 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN 200
+ LDLR I VI L ++ SDN + L L L ++ N
Sbjct: 17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73
Query: 201 SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ--- 257
+ L +L+ L +++N L K + ++
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 258 -LGDLDSLVDLDLS 270
+ + + LD
Sbjct: 134 VIYKVPQVRVLDFQ 147
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 46.2 bits (108), Expect = 4e-06
Identities = 25/191 (13%), Positives = 60/191 (31%), Gaps = 15/191 (7%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
FS L +T + + +L+ + + + + + + L N++ L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQY--LPNVTKL 73
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
++ N LT P L+ L+ L + ++ +
Sbjct: 74 FLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128
Query: 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+ + ++ N + L + L N + P L + +L+
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKL----DTLSLEDNQISDIVP--LAGLTKLQN 182
Query: 340 LDISRNNFTGP 350
L +S+N+ +
Sbjct: 183 LYLSKNHISDL 193
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 23/181 (12%)
Query: 132 SIPDWLGQ-QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLS 190
S+ D + Q +L ++ + + I V + L N+T L+L+ N LT P + +
Sbjct: 35 SVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNL 92
Query: 191 VLSVLDLSRNSLTGNIPTS----------------FGLLKNLSSLDISSNYLTGSIPPGL 234
LD ++ ++ GL+ + + L
Sbjct: 93 GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL 152
Query: 235 GTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIG 294
L+KL L++ +N ++ +P L L L +L LS N +S L GL++L +
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208
Query: 295 N 295
+
Sbjct: 209 S 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 9e-05
Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 22/217 (10%)
Query: 132 SIPDWLGQ-----QLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSL 186
++P + Q +L+ S++ + + L ++ + +++ + +
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--I 64
Query: 187 GQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246
L ++ L L+ N LT P LKNL L + N + + ++S
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLS 118
Query: 247 NNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNL 306
S L L L L L N ++ L K + + +
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVL-----SRLTKLDTLSLEDNQISDIVP 173
Query: 307 FPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343
+++LQ + L +N + L + L +L++
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 208
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 3/149 (2%)
Query: 190 SVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGL-GTLSKLQYLNVSNN 248
S L +R+ + +NL+ L I + + L +L+ L + +
Sbjct: 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 249 SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308
L P L L+LS N+L S+ + SLQ+ V+ N L + ++
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 309 TVSQLQIIVLRQNGFTGPPPDVLWSMPQL 337
+ + + + L MP
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 3/134 (2%)
Query: 158 IPFSLGNLTNLTSLYLSDNGLTGTIPS-SLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNL 216
L NLT LY+ + + L L L L + ++ L P +F L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 217 SSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQ-LGDLDSLVDLDLSMNSLS 275
S L++S N L S+ LQ L +S N L S + L + + L
Sbjct: 83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141
Query: 276 GSVPSELRGLRSLQ 289
L + +
Sbjct: 142 CHGQGPLAHMPNAS 155
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 131 GSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPS 184
+P+ + LD+ I + + L NL L + L +P+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 11/44 (25%), Positives = 14/44 (31%)
Query: 206 IPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNS 249
F LDIS + GL L KL+ + N
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 13/69 (18%)
Query: 152 CSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211
++ + + L +S + L L L
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN------------ 234
Query: 212 LLKNLSSLD 220
LK L +L+
Sbjct: 235 -LKKLPTLE 242
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 147 LDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNI 206
L L I + + +N L S +LD+SR +
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217
Query: 207 PTSFGLLKNLSSLDISSNYLTGSIPP 232
LK L + + +P
Sbjct: 218 SYGLENLKKLRARSTYNL---KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
+ ++ +T IPS L L L +F +L ++IS N +
Sbjct: 9 SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 227 TGSI 230
I
Sbjct: 66 LEVI 69
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 7e-05
Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 15/191 (7%)
Query: 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSL 219
F+ L L +T T+ + L ++ L R + +I L NL+ +
Sbjct: 12 FTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQI 67
Query: 220 DISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279
+ S+N LT P T +N + + + + + + +
Sbjct: 68 NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127
Query: 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRL 339
+ L L + + ++ LQ + N T P L ++ L
Sbjct: 128 TNLNRLELSSNTISDISA---------LSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 176
Query: 340 LDISRNNFTGP 350
LDIS N +
Sbjct: 177 LDISSNKVSDI 187
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 133 IPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVL 192
D L L +++ + + +L +T+L G+ + L+ L
Sbjct: 12 FTD---TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNL 64
Query: 193 SVLDLSRNSLTGN 205
+ ++ S N LT
Sbjct: 65 TQINFSNNQLTDI 77
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.004
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 151 SCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVL 195
S ++ + P NLT L L +S N ++ S L +L+ L L
Sbjct: 159 SNQVTDLKPL--ANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 143 TLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTG----TIPSSLGQLSVLSV 194
+++ L+ +I+ + L ++ + LS N + + ++ L +
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYL 226
+ S L+ L + L
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (90), Expect = 0.001
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 172 YLSDNGLTGTIPSSLGQ------LSVLSVLDLSRNSLTGNIPTS-----FGLLKNLSSLD 220
L+D L+ +++ L L L N + + + + +L L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 221 ISSNYLTGSIPPGLGTLSKL 240
++ N + + ++
Sbjct: 309 LNGNRF-SEEDDVVDEIREV 327
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (90), Expect = 0.001
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 149 LRSCSISGVIPFSLGN------LTNLTSLYLSDNGLTGTIPSSL-----GQLSVLSVLDL 197
L C +S ++ + L +L L N + +L ++ L L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 198 SRNSLTGNIPTSFGLLKNL 216
+ N ++ +
Sbjct: 310 NGNRF-SEEDDVVDEIREV 327
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (90), Expect = 0.001
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 9/96 (9%)
Query: 187 GQLSVLSVLDLSRNSLTGN----IPTSFGLLKNLSSLDISSNYLTG----SIPPGLGTLS 238
+ S + L +++T + ++ + +S N + + + +
Sbjct: 1 ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59
Query: 239 KLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274
L+ S+ L L+ L L
Sbjct: 60 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.7 bits (88), Expect = 0.002
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 197 LSRNSLTGNIPT------SFGLLKNLSSLDISSNYLTGSIPPGLGT-----LSKLQYLNV 245
L+ L+ S L +L + N + L T + L +L +
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 246 SNNSLASSIPAQLGDLDSLVDL 267
+ N S + ++ +
Sbjct: 310 NGNRF-SEEDDVVDEIREVFST 330
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.3 bits (87), Expect = 0.003
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 132 SIPDWLGQ-QLPTLQALDLRSCSISGVIPFSL-----GNLTNLTSLYLSDNGLT--GTIP 183
++ D + + LQ L L+ I +L + +L L L+ N + +
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321
Query: 184 SSLGQL 189
+ ++
Sbjct: 322 DEIREV 327
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 24/180 (13%)
Query: 181 TIPSSLGQLSVLS---VLDLSRNSLTGNIP------TSFGLLKNLSSLDISSNYLTGSIP 231
TI ++ + + L G IP + LK L +S+N + I
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS 64
Query: 232 PGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKF 291
L + L+ L++ N + D + +L ++ + S + L +L+
Sbjct: 65 S-LSGMENLRILSLGRNL---IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120
Query: 292 VIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPD----------VLWSMPQLRLLD 341
+ NN ++ ++ + +L+ ++L N + V+ +P L+ LD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 37.7 bits (86), Expect = 0.003
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 132 SIPDWLG--QQLPTLQALDLRSCSISGVIP------FSLGNLTNLTSLYLSDNGLTGTIP 183
+I D + ++ ++ A + + G+IP +L L L LS N + I
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS 64
Query: 184 SSLGQLSVLSVL 195
SL + L +L
Sbjct: 65 -SLSGMENLRIL 75
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 766 | |||
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 100.0 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 100.0 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 100.0 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 100.0 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 100.0 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 100.0 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 100.0 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 100.0 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 100.0 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 100.0 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 100.0 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 100.0 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 100.0 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 100.0 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 100.0 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 100.0 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 100.0 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 100.0 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 100.0 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 100.0 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 100.0 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 100.0 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 100.0 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 100.0 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 100.0 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 100.0 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 100.0 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 100.0 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 100.0 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 100.0 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 100.0 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 100.0 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 100.0 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 100.0 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 100.0 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 100.0 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 100.0 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 100.0 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 100.0 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 100.0 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 100.0 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 100.0 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 100.0 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 100.0 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 100.0 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 100.0 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 100.0 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 99.87 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.75 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.75 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.74 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.5 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.49 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.48 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.44 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.42 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.38 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.37 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.25 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.24 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.24 | |
| d1j7la_ | 263 | Type IIIa 3',5"-aminoglycoside phosphotransferase | 98.22 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.2 | |
| d1nd4a_ | 255 | Aminoglycoside 3'-phosphotransferase IIa (Kanamyci | 97.85 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 97.43 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.33 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.3 | |
| d1zyla1 | 325 | RdoA {Escherichia coli [TaxId: 562]} | 96.71 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.05 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.99 | |
| d1nw1a_ | 395 | Choline kinase {Caenorhabditis elegans [TaxId: 623 | 95.51 | |
| d2ppqa1 | 316 | Homoserine kinase ThrB {Agrobacterium tumefaciens | 95.31 |
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-46 Score=389.81 Aligned_cols=200 Identities=16% Similarity=0.187 Sum_probs=172.0
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+++.+|+++|++++|||||++++++.+ ++..|+||
T Consensus 4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~-~~~~~ivm 82 (271)
T d1nvra_ 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-GNIQYLFL 82 (271)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CceeEEEE
Confidence 35789999999999999999995 67999999999765432 4579999999999999999999998776 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||++|+|.+++.++. .+++.++..++.|++.||+|||+. +||||||||+|||+++++.+||+|||+|+.
T Consensus 83 Ey~~gg~L~~~l~~~~-------~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~ 152 (271)
T d1nvra_ 83 EYCSGGELFDRIEPDI-------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATV 152 (271)
T ss_dssp ECCTTEEGGGGSBTTT-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eccCCCcHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhhee
Confidence 9999999999996543 499999999999999999999998 999999999999999999999999999986
Q ss_pred cC-----CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 690 QG-----GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 690 ~~-----~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
.. ......+||+.|+|||.+....+ ++.++||||+||++|||+||+.||.....
T Consensus 153 ~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~--------~~~~~DiwSlGvilyeml~G~~pf~~~~~ 211 (271)
T d1nvra_ 153 FRYNNRERLLNKMCGTLPYVAPELLKRREF--------HAEPVDVWSCGIVLTAMLAGELPWDQPSD 211 (271)
T ss_dssp CEETTEECCBCCCCSCGGGSCTHHHHCSSB--------CHHHHHHHHHHHHHHHHHHSSCSCSSSST
T ss_pred eccCCccccccceeeCcCccCHhHhcCCCC--------CCCceeeeHhHHHHHHHHhCCCCCCCCCh
Confidence 52 12345679999999998765543 36789999999999999999999965443
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-46 Score=400.09 Aligned_cols=201 Identities=20% Similarity=0.235 Sum_probs=174.3
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+++.+|+++|++++|||||+++++|.+ +++.|+||
T Consensus 5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-~~~~~iVm 83 (322)
T d1s9ja_ 5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICM 83 (322)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEEC-SSEEEEEE
T ss_pred ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEEE
Confidence 46799999999999999999995 67999999999765333 5689999999999999999999998875 57899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||++|+|.+++.+.+. +++..+..++.|+++||+|||++ .+||||||||+|||+++++++||+|||+|+.
T Consensus 84 Ey~~gg~L~~~l~~~~~-------l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~ 154 (322)
T d1s9ja_ 84 EHMDGGSLDQVLKKAGR-------IPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ 154 (322)
T ss_dssp ECCTTEEHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred EcCCCCcHHHHHhhcCC-------CCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccc
Confidence 99999999999986543 89999999999999999999963 1799999999999999999999999999986
Q ss_pred cC-CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 690 QG-GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 690 ~~-~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
.. ....+.+||+.|+|||.+.+.. ++.++||||+||++|||+||+.||...+..
T Consensus 155 ~~~~~~~~~~GT~~Y~APEvl~~~~---------y~~~~DiWSlGvil~ell~G~~Pf~~~~~~ 209 (322)
T d1s9ja_ 155 LIDSMANSFVGTRSYMSPERLQGTH---------YSVQSDIWSMGLSLVEMAVGRYPIPPPDAK 209 (322)
T ss_dssp HHHHTC---CCSSCCCCHHHHHCSC---------CCTTHHHHHHHHHHHHHHHSSCCSSCCCTT
T ss_pred cCCCccccccCCccccCchHHcCCC---------CCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 53 3345568999999999987654 478999999999999999999999765443
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-45 Score=381.93 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=173.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||+||+|+. .+|+.||||++.... ...+.+.+|++++++++|||||++++++.+ ++..|+|
T Consensus 6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~~~iv 84 (263)
T d2j4za1 6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHD-ATRVYLI 84 (263)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEE-CCEEEEE
Confidence 4688899999999999999995 578999999997533 225679999999999999999999998765 5789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++|+|.+++.+.+ .+++.++..|+.||++||+|||++ +||||||||+|||+++++.+||+|||+|+
T Consensus 85 mEy~~~g~L~~~l~~~~-------~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~ 154 (263)
T d2j4za1 85 LEYAPLGTVYRELQKLS-------KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV 154 (263)
T ss_dssp EECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCS
T ss_pred EeecCCCcHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceee
Confidence 99999999999998654 389999999999999999999998 99999999999999999999999999998
Q ss_pred hcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... ......||+.|+|||.+.+.. ++.++|||||||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~Gt~~Y~APE~~~~~~---------~~~~~DiwSlGvilyell~G~~Pf~~~ 207 (263)
T d2j4za1 155 HAPSSRRTTLCGTLDYLPPEMIEGRM---------HDEKVDLWSLGVLCYEFLVGKPPFEAN 207 (263)
T ss_dssp CCCCCCCEETTEEGGGCCHHHHTTCC---------CCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ecCCCcccccCCCCcccCHHHHcCCC---------CCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence 7643 345568999999999887654 478999999999999999999999543
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-45 Score=382.86 Aligned_cols=195 Identities=18% Similarity=0.268 Sum_probs=172.8
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||+||+|+ ..+|+.||||+++..... .+.+.+|+++|++++|||||++++++.+ ++..|+||||
T Consensus 20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-~~~~~ivmEy 98 (293)
T d1yhwa1 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-GDELWVVMEY 98 (293)
T ss_dssp TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEEEC
T ss_pred cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEE-CCEEEEEEEe
Confidence 469999999999999999999 467999999999765443 6789999999999999999999998776 5789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|++|+|.+++.++ .+++.++..|+.||+.||+|||++ +||||||||+|||++.++++||+|||+|+...
T Consensus 99 ~~gg~L~~~~~~~--------~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~ 167 (293)
T d1yhwa1 99 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167 (293)
T ss_dssp CTTCBHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred cCCCcHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeec
Confidence 9999999988643 389999999999999999999998 99999999999999999999999999998763
Q ss_pred C---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 G---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....+||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 168 ~~~~~~~~~~gt~~Y~aPE~~~~~~---------~~~~~DiwSlGvilyemltG~~Pf~~~ 219 (293)
T d1yhwa1 168 PEQSKRSTMVGTPYWMAPEVVTRKA---------YGPKVDIWSLGIMAIEMIEGEPPYLNE 219 (293)
T ss_dssp STTCCBCCCCSCGGGCCHHHHSSSC---------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred cccccccccccCCCccChhhhcCCC---------CCchhceehHhHHHHHHhhCCCCCCCC
Confidence 2 234567999999999887654 478999999999999999999999543
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-45 Score=382.76 Aligned_cols=198 Identities=19% Similarity=0.327 Sum_probs=167.1
Q ss_pred hCCCCccceeecCCcceEEEEEEcCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 533 TGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.++|+..+.||+|+||+||+|+..+ .||||+++.... ..++|.+|+++|++++|||||++++++.+ ++.++||
T Consensus 7 ~~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~--~~~~lv~ 82 (276)
T d1uwha_ 7 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA--PQLAIVT 82 (276)
T ss_dssp TTCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS--SSCEEEE
T ss_pred cccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec--cEEEEEE
Confidence 3578889999999999999998643 599999965432 25689999999999999999999997753 5689999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||++|+|.++++..+. .++|.++..|+.|||+||+|||++ +||||||||+|||++.++.+||+|||+|+.
T Consensus 83 Ey~~~g~L~~~l~~~~~------~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~ 153 (276)
T d1uwha_ 83 QWCEGSSLYHHLHIIET------KFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATV 153 (276)
T ss_dssp ECCCEEEHHHHHHTSCC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC
T ss_pred ecCCCCCHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceee
Confidence 99999999999975432 499999999999999999999997 999999999999999999999999999976
Q ss_pred cCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... ......||+.|+|||.+.....+. ++.++|||||||++|||+||+.||...
T Consensus 154 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~------~~~~sDiwS~Gv~l~el~tg~~Pf~~~ 212 (276)
T d1uwha_ 154 KSRWSGSHQFEQLSGSILWMAPEVIRMQDKNP------YSFQSDVYAFGIVLYELMTGQLPYSNI 212 (276)
T ss_dssp ------------CCCCGGGCCHHHHTTCSSCC------CCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred ccccCCcccccccccCcccCCHHHHhcccCCC------CCchhhhhhhHHHHHHHHHCCCCCCCC
Confidence 532 123457899999999876543332 588999999999999999999999643
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-45 Score=383.60 Aligned_cols=204 Identities=21% Similarity=0.253 Sum_probs=162.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-CCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-ENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~lV 608 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+.|.+|+++|++++|||||++++++.+. ++.+|+|
T Consensus 4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv 83 (269)
T d2java1 4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 83 (269)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence 5799999999999999999984 67999999999765433 45789999999999999999999988643 3568999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC--CCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC--TLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
||||++|+|.+++.+... ....+++..++.++.|++.||+|||+.. ..+||||||||+|||+++++.+||+|||+
T Consensus 84 mEy~~~g~L~~~i~~~~~---~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~ 160 (269)
T d2java1 84 MEYCEGGDLASVITKGTK---ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL 160 (269)
T ss_dssp EECCTTEEHHHHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHH
T ss_pred EecCCCCcHHHHHHhccc---cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccc
Confidence 999999999999964321 1135999999999999999999999852 23599999999999999999999999999
Q ss_pred hhhcCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+..... .....||+.|+|||.+.... +++++|||||||++|||+||+.||...
T Consensus 161 a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~---------~~~~~DIwSlGvilyel~tg~~Pf~~~ 217 (269)
T d2java1 161 ARILNHDTSFAKAFVGTPYYMSPEQMNRMS---------YNEKSDIWSLGCLLYELCALMPPFTAF 217 (269)
T ss_dssp HHHC-----------CCCSCCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred eeecccCCCccccCCCCcccCCHHHHcCCC---------CChHHHHHhhCHHHHHHhhCCCCCCCC
Confidence 9876432 34567899999999886544 478999999999999999999999643
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-45 Score=379.76 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=164.6
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|++.+++.||||+++......++|.+|++++++++|||||+++|+|.+ ++..++|||||+
T Consensus 5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~~lv~E~~~ 83 (263)
T d1sm2a_ 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFME 83 (263)
T ss_dssp SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSCEEEEECCT
T ss_pred HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceecc-CCceEEEEEecC
Confidence 4678889999999999999999888999999998776667899999999999999999999998876 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.... ..++|..+..|+.|||+||+|||++ +|+||||||+|||+|+++.+||+|||+++.....
T Consensus 84 ~g~L~~~l~~~~------~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~ 154 (263)
T d1sm2a_ 84 HGCLSDYLRTQR------GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 154 (263)
T ss_dssp TCBHHHHHHTTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC--------
T ss_pred CCcHHHHhhccc------cCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCC
Confidence 999999987543 2489999999999999999999998 9999999999999999999999999999876322
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....||..|+|||.+.... ++.|+|||||||++|||+||..|++..
T Consensus 155 ~~~~~~~~~gt~~y~aPE~l~~~~---------~~~k~DVwS~Gvil~el~t~~~~~~~~ 205 (263)
T d1sm2a_ 155 QYTSSTGTKFPVKWASPEVFSFSR---------YSSKSDVWSFGVLMWEVFSEGKIPYEN 205 (263)
T ss_dssp ----------CTTSCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHTTSCCTTCS
T ss_pred CceeecceecCcccCChHHhcCCC---------CCchhhhcchHHHHHHHHHCCCCCCCC
Confidence 22356788999999876554 578999999999999999965555433
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-45 Score=382.32 Aligned_cols=197 Identities=19% Similarity=0.371 Sum_probs=171.3
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||+||+|+.++++.||||+++......++|.+|+++|++++|||||+++|+|.+ +..|+|||||+
T Consensus 13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~--~~~~iv~Ey~~ 90 (272)
T d1qpca_ 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ--EPIYIITEYME 90 (272)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEEECCT
T ss_pred HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc--CCeEEEEEeCC
Confidence 4677889999999999999999889999999998776667889999999999999999999997753 56899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++..... ..++|.++.+|+.|||+||+|||++ +||||||||+|||+++++.+||+|||+|+.....
T Consensus 91 ~g~L~~~~~~~~~-----~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~ 162 (272)
T d1qpca_ 91 NGSLVDFLKTPSG-----IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDN 162 (272)
T ss_dssp TCBHHHHTTSHHH-----HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSS
T ss_pred CCcHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccCC
Confidence 9999998865432 3489999999999999999999997 9999999999999999999999999999876432
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.....+|..|+|||.+..+. ++.|+|||||||++|||+||+.|++..
T Consensus 163 ~~~~~~~~~gt~~y~APE~~~~~~---------~~~~sDvwS~Gvvl~ellt~~~~~~~~ 213 (272)
T d1qpca_ 163 EYTAREGAKFPIKWTAPEAINYGT---------FTIKSDVWSFGILLTEIVTHGRIPYPG 213 (272)
T ss_dssp CEECCTTCCCCTTTSCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred ccccccccCCcccccChHHHhCCC---------CCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence 23346788999999875443 578999999999999999976666443
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-45 Score=384.09 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=172.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
+.|+..+.||+|+||+||+|+. .+|+.||||+++..... .++|.+|+++|++++|||||++++++.+ ++..|+||||
T Consensus 12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~lvmEy 90 (288)
T d2jfla1 12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY-ENNLWILIEF 90 (288)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEE-TTEEEEEEEC
T ss_pred cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-CCeEEEEEec
Confidence 4588889999999999999995 67999999999765433 5689999999999999999999998776 5789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcC
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQG 691 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~ 691 (766)
|++|+|.+++.+... .+++.++..++.||+.||+|||++ +||||||||+|||++.++++||+|||+|+...
T Consensus 91 ~~~g~L~~~~~~~~~------~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~ 161 (288)
T d2jfla1 91 CAGGAVDAVMLELER------PLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNT 161 (288)
T ss_dssp CTTEEHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECH
T ss_pred CCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccC
Confidence 999999999875432 499999999999999999999998 99999999999999999999999999997542
Q ss_pred C---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 692 G---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 692 ~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. ......||+.|+|||.+......... ++.|+|||||||++|||+||+.||...
T Consensus 162 ~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~----y~~k~DiwSlGvilyemltg~~Pf~~~ 218 (288)
T d2jfla1 162 RTIQRRDSFIGTPYWMAPEVVMCETSKDRP----YDYKADVWSLGITLIEMAEIEPPHHEL 218 (288)
T ss_dssp HHHHHHTCCCSCCTTCCHHHHTTCSTTTSS----TTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CCcccccccccccccCCHHHHhhcccCCCC----CChhhhHHHHHHHHHHHhhCCCCCCCC
Confidence 1 23346789999999987543221112 689999999999999999999999644
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-44 Score=375.08 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=166.5
Q ss_pred CccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec---CCcEEEEE
Q 004248 537 SDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER---ENEKFLVY 609 (766)
Q Consensus 537 ~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~---~~~~~lV~ 609 (766)
+..++||+|+||+||+|+. .+++.||||++...... .++|.+|+++|++++|||||++++++... ++.+|+||
T Consensus 12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm 91 (270)
T d1t4ha_ 12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 91 (270)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence 4556899999999999995 57899999999765432 46799999999999999999999987542 34589999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC-CCCcEEeccchhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD-DKFEVRLGSLSEVC 688 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFG~a~ 688 (766)
|||++|+|.+++.+.. .+++.++..++.||++||+|||++ .++||||||||+|||++ +++.+||+|||+|+
T Consensus 92 E~~~~g~L~~~l~~~~-------~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~ 163 (270)
T d1t4ha_ 92 ELMTSGTLKTYLKRFK-------VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 163 (270)
T ss_dssp ECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred eCCCCCcHHHHHhccc-------cccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcce
Confidence 9999999999997654 389999999999999999999986 23499999999999997 57999999999998
Q ss_pred hcCCC-CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGD-AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~-~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..... ....+||+.|+|||.+.. . ++.++|||||||++|||+||+.||...
T Consensus 164 ~~~~~~~~~~~GT~~Y~aPE~~~~-~---------~~~~~DIwSlGvilyel~~g~~Pf~~~ 215 (270)
T d1t4ha_ 164 LKRASFAKAVIGTPEFMAPEMYEE-K---------YDESVDVYAFGMCMLEMATSEYPYSEC 215 (270)
T ss_dssp GCCTTSBEESCSSCCCCCGGGGGT-C---------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred eccCCccCCcccCccccCHHHhCC-C---------CCCcCchhhHHHHHHHHHHCCCCCCCc
Confidence 76433 456689999999998743 2 478999999999999999999999543
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.5e-45 Score=380.67 Aligned_cols=198 Identities=20% Similarity=0.361 Sum_probs=173.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++......++|.+|+++|++++|||||+++++|.+ ++..|+|||||
T Consensus 17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-~~~~~iv~E~~ 95 (287)
T d1opja_ 17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEFM 95 (287)
T ss_dssp GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSCEEEEECC
T ss_pred HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEee-CCeeEEEeecc
Confidence 4678889999999999999996 468999999998776667889999999999999999999998865 56899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.+++.+... ..++|..+..|+.|||+||+|||++ +||||||||+|||+++++++||+|||+|+....
T Consensus 96 ~~g~l~~~l~~~~~-----~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~ 167 (287)
T d1opja_ 96 TYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTG 167 (287)
T ss_dssp TTCBHHHHHHHSCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred cCcchHHHhhhccc-----cchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecCC
Confidence 99999999976433 3599999999999999999999997 999999999999999999999999999987643
Q ss_pred CC----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 DA----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~~----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.. ....+|..|+|||.+.... ++.|+|||||||++|||+||+.|+...
T Consensus 168 ~~~~~~~~~~g~~~y~aPE~~~~~~---------~~~k~DiwS~Gv~l~ell~~~~p~~~~ 219 (287)
T d1opja_ 168 DTYTAHAGAKFPIKWTAPESLAYNK---------FSIKSDVWAFGVLLWEIATYGMSPYPG 219 (287)
T ss_dssp SSSEEETTEEECGGGCCHHHHHHCC---------CSHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CCceeeccccccccccChHHHcCCC---------CCchhhhhhHHHHHHHHHhCCCCCCCc
Confidence 32 2235788999999876544 578999999999999999988777544
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.7e-44 Score=381.76 Aligned_cols=197 Identities=22% Similarity=0.278 Sum_probs=171.3
Q ss_pred CCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
.|+..+.||+|+||+||+|+ ..+|+.||||+++..... .++|.+|+++|++++|||||++++++.+ ++..|+||
T Consensus 16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-~~~~~iv~ 94 (309)
T d1u5ra_ 16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-EHTAWLVM 94 (309)
T ss_dssp HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEE-CCEEEEEE
Confidence 48889999999999999998 467999999999765433 3578999999999999999999998776 57899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
|||++|+|..++..++ .++|.++..|+.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+.
T Consensus 95 E~~~~g~l~~~~~~~~-------~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~ 164 (309)
T d1u5ra_ 95 EYCLGSASDLLEVHKK-------PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASI 164 (309)
T ss_dssp ECCSEEHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBS
T ss_pred EecCCCchHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccc
Confidence 9999999987765543 399999999999999999999998 999999999999999999999999999987
Q ss_pred cCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....||+.|+|||.+.+...+. ++.++|||||||++|||+||+.||...
T Consensus 165 ~~~-~~~~~GT~~Y~APE~~~~~~~~~------y~~~~DiwSlGvilyel~~g~~Pf~~~ 217 (309)
T d1u5ra_ 165 MAP-ANSFVGTPYWMAPEVILAMDEGQ------YDGKVDVWSLGITCIELAERKPPLFNM 217 (309)
T ss_dssp SSS-BCCCCSCGGGCCHHHHTTTTSCC------BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred cCC-CCccccCccccCHHHHhccCCCC------cCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence 543 34567999999999876543332 688999999999999999999999543
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-44 Score=378.63 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=170.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++|++++|||||++++++.+ ++..|+|
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-~~~~~iv 86 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-DEKLYFG 86 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC-SSEEEEE
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE-CCEEEEE
Confidence 4688999999999999999995 679999999997543 235679999999999999999999997765 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++|+|.+++...+. +++..+..++.|++.||+|||+. +||||||||+|||+++++.+||+|||+|+
T Consensus 87 mEy~~gg~L~~~~~~~~~-------l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~ 156 (288)
T d1uu3a_ 87 LSYAKNGELLKYIRKIGS-------FDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAK 156 (288)
T ss_dssp ECCCTTEEHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEccCCCCHHHhhhccCC-------CCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccce
Confidence 999999999999876543 99999999999999999999998 99999999999999999999999999998
Q ss_pred hcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....+||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 157 ~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~---------~~~~~DiwSlGvilyell~g~~Pf~~~ 213 (288)
T d1uu3a_ 157 VLSPESKQARANSFVGTAQYVSPELLTEKS---------ACKSSDLWALGCIIYQLVAGLPPFRAG 213 (288)
T ss_dssp ECC----------CCCCGGGCCHHHHHTCC---------CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecccCCcccccccccCCccccCceeeccCC---------CCcccceehhhHHHHHHhhCCCCCCCc
Confidence 7632 223457999999999886554 478999999999999999999999643
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-44 Score=382.23 Aligned_cols=208 Identities=20% Similarity=0.339 Sum_probs=163.9
Q ss_pred cccHHHHHHHhCCC---------CccceeecCCcceEEEEEEc-CC---cEEEEEEeeccccC--HHHHHHHHHHHhhcC
Q 004248 523 SFTYQQLLAATGDF---------SDANLIKNGHSGDLFRGILE-GG---IPVVIKRIDLQSVK--TEAYLLELDFFSKVS 587 (766)
Q Consensus 523 ~~~~~~l~~~~~~~---------~~~~~ig~G~~g~Vy~~~~~-~g---~~vavK~l~~~~~~--~~~~~~E~~~l~~l~ 587 (766)
.+|++|+.+++.+| +..++||+|+||+||+|+.. ++ ..||||++...... .++|.+|+++|++++
T Consensus 6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~ 85 (299)
T d1jpaa_ 6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD 85 (299)
T ss_dssp GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence 35666666665544 44678999999999999853 33 36899998654332 567999999999999
Q ss_pred CCCcccceeEEEecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCC
Q 004248 588 HARLVPLLGHCMERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQ 667 (766)
Q Consensus 588 H~niv~l~~~~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlK 667 (766)
|||||+++|+|.. ++..|+|||||++|+|.+++....+ .++|.++..|+.|||+||+|||++ +|||||||
T Consensus 86 HpnIv~l~g~~~~-~~~~~iv~Ey~~~g~L~~~~~~~~~------~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlK 155 (299)
T d1jpaa_ 86 HPNVIHLEGVVTK-STPVMIITEFMENGSLDSFLRQNDG------QFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLA 155 (299)
T ss_dssp CTTBCCEEEEECS-SSSCEEEEECCTTEEHHHHHHTTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCC
T ss_pred CCCCccEEEEEee-CCEEEEEEEecCCCcceeeeccccC------CCCHHHHHHHHHHHHHHHHHHhhC---CCccCccc
Confidence 9999999998865 5689999999999999999876432 489999999999999999999997 99999999
Q ss_pred CCCeeeCCCCcEEeccchhhhhcCCCC--------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHH
Q 004248 668 ASSILLDDKFEVRLGSLSEVCAQGGDA--------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSA 739 (766)
Q Consensus 668 p~NILl~~~~~~kl~DFG~a~~~~~~~--------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~el 739 (766)
|+|||+++++++||+|||+|+...... ....+|..|+|||....+. ++.++|||||||++|||
T Consensus 156 p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---------~~~~sDvwS~Gvvl~el 226 (299)
T d1jpaa_ 156 ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRK---------FTSASDVWSYGIVMWEV 226 (299)
T ss_dssp GGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCC---------CCHHHHHHHHHHHHHHH
T ss_pred cceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCC---------CCcccccccchHHHHHH
Confidence 999999999999999999998763221 1234688899999876544 57899999999999999
Q ss_pred hc-CCCCCCCC
Q 004248 740 IF-NNHLNLSS 749 (766)
Q Consensus 740 lt-G~~p~~~~ 749 (766)
+| |+.||...
T Consensus 227 ~t~g~~Pf~~~ 237 (299)
T d1jpaa_ 227 MSYGERPYWDM 237 (299)
T ss_dssp HTTSCCTTTTC
T ss_pred HhCCCCCCCCC
Confidence 98 89999543
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-44 Score=380.56 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=175.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++... ...+.+.+|+++|++++|||||++++++.+ ++..|+|
T Consensus 4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-~~~~~iv 82 (316)
T d1fota_ 4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-AQQIFMI 82 (316)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-SSEEEEE
T ss_pred hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEee-CCeeeeE
Confidence 5688999999999999999995 679999999997532 235789999999999999999999997765 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||+||+|.+++..... +++.....++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 83 mE~~~gg~l~~~~~~~~~-------~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~ 152 (316)
T d1fota_ 83 MDYIEGGELFSLLRKSQR-------FPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAK 152 (316)
T ss_dssp ECCCCSCBHHHHHHHTSS-------CCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred eeecCCcccccccccccc-------ccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccce
Confidence 999999999999876543 88999999999999999999998 99999999999999999999999999999
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.........+||+.|+|||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 153 ~~~~~~~~~~Gt~~Y~APE~l~~~~---------y~~~~DiwSlGvilyemltG~~Pf~~~ 204 (316)
T d1fota_ 153 YVPDVTYTLCGTPDYIAPEVVSTKP---------YNKSIDWWSFGILIYEMLAGYTPFYDS 204 (316)
T ss_dssp ECSSCBCCCCSCTTTCCHHHHTTCC---------BCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EeccccccccCcccccCHHHHcCCC---------CCchhhccccchhHHHHHhCCCCCCCc
Confidence 8877777788999999999886554 478999999999999999999999644
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-44 Score=381.66 Aligned_cols=197 Identities=15% Similarity=0.132 Sum_probs=174.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..++||+|+||+||+|+. .+|+.||||++++.. ...+.+.+|+++|++++|||||++++++.+ ++..|+|
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-~~~~~iv 83 (337)
T d1o6la_ 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-HDRLCFV 83 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecc-ccccccc
Confidence 5799999999999999999994 689999999997543 235679999999999999999999997765 6789999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++|+|.+++.+.+. +++.....++.|++.||+|||++ +||||||||+|||++++|.+||+|||+|+
T Consensus 84 ~ey~~gg~L~~~~~~~~~-------~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~ 153 (337)
T d1o6la_ 84 MEYANGGELFFHLSRERV-------FTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK 153 (337)
T ss_dssp EECCTTCBHHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred eeccCCCchhhhhhcccC-------CcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeeccccc
Confidence 999999999999987654 89999999999999999999998 99999999999999999999999999998
Q ss_pred hcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 689 AQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 689 ~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
... ......+||+.|+|||.+.+.. ++.++||||+||++|||+||+.||...+
T Consensus 154 ~~~~~~~~~~~~~GT~~Y~aPE~~~~~~---------y~~~~DiwSlGvilyeml~G~~pf~~~~ 209 (337)
T d1o6la_ 154 EGISDGATMKTFCGTPEYLAPEVLEDND---------YGRAVDWWGLGVVMYEMMCGRLPFYNQD 209 (337)
T ss_dssp CSCCTTCCBCCCEECGGGCCGGGGSSSC---------BCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ccccCCcccccceeCHHHhhhhhccCCC---------CChhhcccchhhHHHHHHHCCCCCCCcC
Confidence 653 2345578999999999987655 4689999999999999999999996544
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.2e-44 Score=378.67 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=156.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
+.|+..+.||+|+||+||+|+. .+|+.||||++...... .+.+.+|+++|++++|||||++++++.+ ++..|+|||
T Consensus 9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-~~~~~lvmE 87 (307)
T d1a06a_ 9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES-GGHLYLIMQ 87 (307)
T ss_dssp GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEEC-SSEEEEEEC
T ss_pred cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEEEe
Confidence 4588899999999999999995 57999999999765432 4578899999999999999999997765 678999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC---CCCcEEeccchhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD---DKFEVRLGSLSEV 687 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~DFG~a 687 (766)
||++|+|.++|.+++ .+++.++..++.||+.||+|||+. +||||||||+|||++ +++.+||+|||+|
T Consensus 88 ~~~gg~L~~~l~~~~-------~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a 157 (307)
T d1a06a_ 88 LVSGGELFDRIVEKG-------FYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLS 157 (307)
T ss_dssp CCCSCBHHHHHHTCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC---
T ss_pred ccCCCcHHHhhhccc-------CCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEecccee
Confidence 999999999997654 399999999999999999999998 999999999999995 5789999999999
Q ss_pred hhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+.... .....+||+.|+|||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 158 ~~~~~~~~~~~~~GT~~y~APE~~~~~~---------~~~~~DiwSlGvilyell~g~~Pf~~~ 212 (307)
T d1a06a_ 158 KMEDPGSVLSTACGTPGYVAPEVLAQKP---------YSKAVDCWSIGVIAYILLCGYPPFYDE 212 (307)
T ss_dssp ---------------CTTSCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred EEccCCCeeeeeeeCccccCcHHHcCCC---------CCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence 87633 244567999999999886654 478999999999999999999999643
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-43 Score=364.68 Aligned_cols=197 Identities=21% Similarity=0.289 Sum_probs=174.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..++||+|+||+||+|+.++++.||||+++......++|.+|++++++++|||||+++|+|.+ ++..++||||++
T Consensus 4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~-~~~~~iv~Ey~~ 82 (258)
T d1k2pa_ 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-QRPIFIITEYMA 82 (258)
T ss_dssp CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECC-SSSEEEEEECCT
T ss_pred HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEee-CCceEEEEEccC
Confidence 5788999999999999999999889999999998877778899999999999999999999998876 568999999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++.... ..++|..+.+++.|+|+||+|||+. +|+||||||+|||+++++.+||+|||+++.....
T Consensus 83 ~g~l~~~~~~~~------~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 153 (258)
T d1k2pa_ 83 NGCLLNYLREMR------HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD 153 (258)
T ss_dssp TEEHHHHHHSGG------GCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSS
T ss_pred CCcHHHhhhccc------cCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCC
Confidence 999999976543 2489999999999999999999997 9999999999999999999999999999865322
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....+|..|+|||.+.... ++.|+|||||||++|||+| |+.||...
T Consensus 154 ~~~~~~~~~~t~~y~aPE~~~~~~---------~~~ksDiwS~G~~l~el~t~g~~Pf~~~ 205 (258)
T d1k2pa_ 154 EYTSSVGSKFPVRWSPPEVLMYSK---------FSSKSDIWAFGVLMWEIYSLGKMPYERF 205 (258)
T ss_dssp SCCCCCCSCCCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTTS
T ss_pred CceeecccCCCCCcCCcHHhcCCC---------CCcceeecccchhhHhHHhcCCCCCCCC
Confidence 22356788999999876444 5789999999999999998 89998544
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-43 Score=379.44 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=175.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
++|+..+.||+|+||+||+|+. .+|+.||||++.... ...+.+.+|+++|++++|||||++++++.. .+..++|
T Consensus 41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~~~~v 119 (350)
T d1rdqe_ 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-NSNLYMV 119 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEE
T ss_pred cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccc-ccccccc
Confidence 4688999999999999999995 679999999997533 225679999999999999999999997765 5689999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
|||+++|+|.+++.+.+. +++.+...|+.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 120 ~e~~~~g~l~~~l~~~~~-------l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~ 189 (350)
T d1rdqe_ 120 MEYVAGGEMFSHLRRIGR-------FSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAK 189 (350)
T ss_dssp EECCTTCBHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred cccccccchhhhHhhcCC-------CCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeee
Confidence 999999999999976543 89999999999999999999998 99999999999999999999999999999
Q ss_pred hcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 689 AQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 689 ~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
..........||+.|+|||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 190 ~~~~~~~~~~Gt~~Y~APE~~~~~~---------~~~~~DiwSlGvilyemltG~~Pf~~~ 241 (350)
T d1rdqe_ 190 RVKGRTWTLCGTPEALAPEIILSKG---------YNKAVDWWALGVLIYEMAAGYPPFFAD 241 (350)
T ss_dssp ECSSCBCCCEECGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecccccccccCccccCCHHHHcCCC---------CCccccccchhHHHHHHHhCCCCCCCc
Confidence 8877777788999999999887554 478999999999999999999999543
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-43 Score=368.45 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=171.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc-------CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV-------KTEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~-------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++.... ..+.|.+|+++|++++|||||++++++.+ ++..
T Consensus 10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-~~~~ 88 (293)
T d1jksa_ 10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN-KTDV 88 (293)
T ss_dssp GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-SSEE
T ss_pred cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEE
Confidence 5689999999999999999995 6799999999965322 25689999999999999999999997765 6789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC----cEEe
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF----EVRL 681 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~kl 681 (766)
|+|||||++|+|.+++.+.+ .+++.++..++.|++.||+|||+. +||||||||+|||++.++ .+|+
T Consensus 89 ~iv~E~~~gg~L~~~i~~~~-------~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl 158 (293)
T d1jksa_ 89 ILILELVAGGELFDFLAEKE-------SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKI 158 (293)
T ss_dssp EEEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEE
T ss_pred EEEEEcCCCccccchhcccc-------ccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEe
Confidence 99999999999999997654 399999999999999999999998 999999999999999876 4999
Q ss_pred ccchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 682 GSLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 682 ~DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+|||+|+... .......+|+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 159 ~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~---------~~~~~DiwSlGvilyell~g~~Pf~~~ 219 (293)
T d1jksa_ 159 IDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEP---------LGLEADMWSIGVITYILLSGASPFLGD 219 (293)
T ss_dssp CCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cchhhhhhcCCCccccccCCCCcccCHHHHcCCC---------CCCcccchhhhHHHHHHHcCCCCCCCC
Confidence 9999998763 2344567899999999886544 478999999999999999999999643
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-43 Score=368.88 Aligned_cols=195 Identities=20% Similarity=0.298 Sum_probs=164.9
Q ss_pred CCCccc-eeecCCcceEEEEEEc---CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEE
Q 004248 535 DFSDAN-LIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLV 608 (766)
Q Consensus 535 ~~~~~~-~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV 608 (766)
+|...+ +||+|+||+||+|... ++..||||+++..... .++|.+|+++|++++|||||+++|+|.. +..|+|
T Consensus 9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~~lv 86 (285)
T d1u59a_ 9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--EALMLV 86 (285)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEEEE
T ss_pred CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc--CeEEEE
Confidence 455556 4999999999999743 4568999999754332 5689999999999999999999998753 468999
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
||||++|+|.+++...+ ..++|.++..++.|||+||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 87 mE~~~~g~L~~~l~~~~------~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~ 157 (285)
T d1u59a_ 87 MEMAGGGPLHKFLVGKR------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSK 157 (285)
T ss_dssp EECCTTEEHHHHHTTCT------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEeCCCCcHHHHhhccc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhh
Confidence 99999999999986543 2499999999999999999999998 99999999999999999999999999998
Q ss_pred hcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 689 AQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 689 ~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
..... .....+|..|+|||.+..+. ++.++|||||||++|||+| |+.||...
T Consensus 158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~ 216 (285)
T d1u59a_ 158 ALGADDSYYTARSAGKWPLKWYAPECINFRK---------FSSRSDVWSYGVTMWEALSYGQKPYKKM 216 (285)
T ss_dssp ECTTCSCEECCCCSSCCCGGGCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred cccccccccccccccccCccccChHHHhCCC---------CCccchhhcchHHHHHHHhCCCCCCCCC
Confidence 76322 22345788999999875443 5789999999999999998 99999643
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=100.00 E-value=3.2e-43 Score=378.36 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=172.0
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||+||+|+. .+|+.||||++...... .+.+.+|+++|++++|||||++++++.+ ++..|+||||
T Consensus 26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-~~~~~ivmE~ 104 (350)
T d1koaa2 26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-DNEMVMIYEF 104 (350)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEE-TTEEEEEECC
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEEEEc
Confidence 5799999999999999999995 67999999999765433 5679999999999999999999997766 6789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC--CCcEEeccchhhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD--KFEVRLGSLSEVCA 689 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~--~~~~kl~DFG~a~~ 689 (766)
|++|+|.+++.+.. ..+++.++..|+.||+.||+|||++ +||||||||+|||++. ++.+||+|||+|+.
T Consensus 105 ~~gg~L~~~l~~~~------~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~ 175 (350)
T d1koaa2 105 MSGGELFEKVADEH------NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 175 (350)
T ss_dssp CCSCBHHHHHTCTT------SCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEE
T ss_pred CCCCCHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchhee
Confidence 99999999996543 2499999999999999999999998 9999999999999964 68899999999987
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....||+.|+|||.+.+.. ++.++||||+||++|||+||+.||...
T Consensus 176 ~~~~~~~~~~~gT~~Y~aPEv~~~~~---------~~~~~DiwSlGvilyell~G~~Pf~~~ 228 (350)
T d1koaa2 176 LDPKQSVKVTTGTAEFAAPEVAEGKP---------VGYYTDMWSVGVLSYILLSGLSPFGGE 228 (350)
T ss_dssp CCTTSCEEEECSCTTTCCHHHHHTCC---------BCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccccceecCcccccCHHHHcCCC---------CChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence 6433 33467899999999886554 467999999999999999999999543
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5e-43 Score=379.11 Aligned_cols=198 Identities=21% Similarity=0.214 Sum_probs=169.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc----CHHHHHH---HHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV----KTEAYLL---ELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~----~~~~~~~---E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..++||+|+||.||+|+. .+|+.||||++..... ....+.+ |+++++.++|||||++++++.+ ++..
T Consensus 4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~-~~~~ 82 (364)
T d1omwa3 4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKL 82 (364)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-SSEE
T ss_pred HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE-CCEE
Confidence 6799999999999999999995 5799999999965432 1233444 4777888899999999997765 5789
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+|||||++|+|.++|.++.. +++.++..++.||+.||+|||++ +||||||||+|||+++++.+||+|||
T Consensus 83 ~ivmE~~~gg~L~~~l~~~~~-------~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFG 152 (364)
T d1omwa3 83 SFILDLMNGGDLHYHLSQHGV-------FSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLG 152 (364)
T ss_dssp EEEECCCCSCBHHHHHHHHCS-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCT
T ss_pred EEEEEecCCCcHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeec
Confidence 999999999999999976543 88999999999999999999998 99999999999999999999999999
Q ss_pred hhhhcC-CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 686 EVCAQG-GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 686 ~a~~~~-~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+|+... .......||+.|+|||.+..+.. ++.++||||+||++|||+||+.||....
T Consensus 153 la~~~~~~~~~~~~GT~~y~APE~~~~~~~--------~~~~~DiwSlGvilyemltG~~Pf~~~~ 210 (364)
T d1omwa3 153 LACDFSKKKPHASVGTHGYMAPEVLQKGVA--------YDSSADWFSLGCMLFKLLRGHSPFRQHK 210 (364)
T ss_dssp TCEECSSSCCCSCCSCGGGCCHHHHSTTCC--------CCTHHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred eeeecCCCcccccccccccchhHHhhcCCC--------CCcccchhHHHHHHHHHHhCCCCCCCCC
Confidence 998764 34556689999999998764432 5789999999999999999999996543
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=100.00 E-value=5.8e-43 Score=376.65 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=171.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+.+.+|+++|++++|||||++++++.+ ++..|+||||
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-~~~~~ivmE~ 107 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-KYEMVLILEF 107 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-SSEEEEEEEC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-CCEEEEEEEc
Confidence 4689999999999999999994 67999999999765433 5678999999999999999999997765 6789999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeC--CCCcEEeccchhhhh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLD--DKFEVRLGSLSEVCA 689 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~--~~~~~kl~DFG~a~~ 689 (766)
|++|+|.+++.... ..+++.+...|+.||+.||+|||+. +||||||||+|||++ .++.+||+|||+|+.
T Consensus 108 ~~gg~L~~~~~~~~------~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~ 178 (352)
T d1koba_ 108 LSGGELFDRIAAED------YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATK 178 (352)
T ss_dssp CCCCBHHHHTTCTT------CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEE
T ss_pred CCCChHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeeccccee
Confidence 99999999886543 2499999999999999999999998 999999999999998 578999999999987
Q ss_pred cCCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....+|+.|+|||.+.+.. ++.++||||+||++|||+||+.||..
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvilyelltG~~Pf~~ 230 (352)
T d1koba_ 179 LNPDEIVKVTTATAEFAAPEIVDREP---------VGFYTDMWAIGVLGYVLLSGLSPFAG 230 (352)
T ss_dssp CCTTSCEEEECSSGGGCCHHHHTTCC---------BCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred cCCCCceeeccCcccccCHHHHcCCC---------CCCccchHHHHHHHHHHHhCCCCCCC
Confidence 7433 34567899999999886654 47899999999999999999999954
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-43 Score=370.22 Aligned_cols=199 Identities=20% Similarity=0.325 Sum_probs=168.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||+||+|+..+++.||||+++......++|.+|+.+|++++|||||+++|+|. +++.++|||||+
T Consensus 17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~--~~~~~lv~Ey~~ 94 (285)
T d1fmka3 17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS--EEPIYIVTEYMS 94 (285)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC--SSSCEEEECCCT
T ss_pred HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe--cCCeEEEEEecC
Confidence 468889999999999999999988889999999877666788999999999999999999999874 356899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|..++..... ..++|.++..|+.|||+||+|||+. +|+||||||+|||+|+++++||+|||+|+.....
T Consensus 95 ~g~l~~~~~~~~~-----~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~ 166 (285)
T d1fmka3 95 KGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN 166 (285)
T ss_dssp TCBHHHHHSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred CCchhhhhhhccc-----ccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCC
Confidence 9999999875432 3499999999999999999999997 9999999999999999999999999999876322
Q ss_pred ----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCcc
Q 004248 694 ----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRF 751 (766)
Q Consensus 694 ----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~ 751 (766)
.....+|..|+|||....+. ++.++|||||||++|||+||+.|+.....
T Consensus 167 ~~~~~~~~~gt~~y~aPE~~~~~~---------~~~ksDI~S~Giil~el~t~~~p~~~~~~ 219 (285)
T d1fmka3 167 EYTARQGAKFPIKWTAPEAALYGR---------FTIKSDVWSFGILLTELTTKGRVPYPGMV 219 (285)
T ss_dssp ---------CCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred CceeeccccccccccChHHHhCCC---------CCcHHhhhcchHHHHHHHhCCCCCCCCCC
Confidence 22356789999999875544 57899999999999999998777754433
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-43 Score=364.55 Aligned_cols=188 Identities=16% Similarity=0.254 Sum_probs=158.7
Q ss_pred ceeecCCcceEEEEEEc---CCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 540 NLIKNGHSGDLFRGILE---GGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 540 ~~ig~G~~g~Vy~~~~~---~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++||+|+||+||+|... +++.||||+++..... .++|.+|+++|++++|||||+++|+|.. +..|+|||||+
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~--~~~~lvmE~~~ 90 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--ESWMLVMEMAE 90 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES--SSEEEEEECCT
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc--CCEEEEEEcCC
Confidence 57999999999999853 3578999999654322 5679999999999999999999998753 46899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.+++++.. .++|.++..|+.|||+||+|||++ +||||||||+|||++.++.+||+|||+|+.....
T Consensus 91 ~g~L~~~l~~~~-------~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~ 160 (277)
T d1xbba_ 91 LGPLNKYLQQNR-------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD 160 (277)
T ss_dssp TEEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTT
T ss_pred CCcHHHHHhhcc-------CCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhcccc
Confidence 999999998654 399999999999999999999997 9999999999999999999999999999865322
Q ss_pred ------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 694 ------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 694 ------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
.....||..|+|||.+.... ++.++|||||||++|||+| |+.||..
T Consensus 161 ~~~~~~~~~~~gt~~y~APE~l~~~~---------~~~~sDiwS~Gv~l~ellt~g~~Pf~~ 213 (277)
T d1xbba_ 161 ENYYKAQTHGKWPVKWYAPECINYYK---------FSSKSDVWSFGVLMWEAFSYGQKPYRG 213 (277)
T ss_dssp CSEEEC----CCCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred ccccccccccCCCceecCchhhcCCC---------CCchhhhccchhhhhHHhhCCCCCCCC
Confidence 12245788999999875443 5789999999999999998 8999954
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=3.7e-42 Score=366.00 Aligned_cols=290 Identities=31% Similarity=0.486 Sum_probs=232.8
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CCCCCCCCCCCC-CccceeecC----CCEEEEEcCCCCcCCCCCCCCccchhhhccCC
Q 004248 45 LSSRTELAALFELRSSLGLR--RRDWPRKVDPCL-VWNGVRCQN----GSVVGINISGFRRTRLGSQNPRFAADALVNLT 117 (766)
Q Consensus 45 ~~~~~~~~aLl~~k~~l~~~--~~~W~~~~~~C~-~W~gv~C~~----~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~ 117 (766)
.|+++|++||++||+++.++ .++|..++|||. .|.||+|++ +||++++|++.
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~--------------------- 60 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------------------- 60 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC---------------------
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC---------------------
Confidence 69999999999999999764 478987778663 599999973 26777777653
Q ss_pred CCCEEecCCCCCCC--CCchhhhhCCCCCCEEEccC-CCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCE
Q 004248 118 HLASFNASRFLLPG--SIPDWLGQQLPTLQALDLRS-CSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSV 194 (766)
Q Consensus 118 ~L~~L~ls~n~l~g--~ip~~~~~~l~~L~~L~Ls~-N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 194 (766)
.+.| .||+.+++ |++|++|||++ |+++|.+|..|+++++|++|+|++|++.+..|..+.++.+|++
T Consensus 61 ----------~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 61 ----------NLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp ----------CCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ----------CCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 3333 47777765 88888888875 7888888888888888888888888888888888888888888
Q ss_pred EEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCc-cEEEccCCCCCCCCccccCCCCCCCEEEccCCc
Q 004248 195 LDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKL-QYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNS 273 (766)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 273 (766)
++++.|++.+.+|.++.++++|+.+++++|.+++.+|..+..+.++ +.+++++|++++..|..+.++..+ .+++++|.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 8888888888888888888888888888888888888888777775 788888888888888888776544 68888888
Q ss_pred CCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCc
Q 004248 274 LSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPN 353 (766)
Q Consensus 274 l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 353 (766)
+.+.+|..+..+++|+.+++++|.+++.++. +..+++|+.|+|++|+++|.+|+.|.++++|++|||++|+|+|.+|.
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~--~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccccccccccccccccccccccccccccc--cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 8888888888888888888888888876653 46778888899999999888888899999999999999999988884
Q ss_pred ccccCCCCCcEEEccCCc
Q 004248 354 SRSNVNTSTVELNISQNM 371 (766)
Q Consensus 354 ~~~~~~~~l~~L~ls~N~ 371 (766)
. ..+.+|..+++++|+
T Consensus 287 ~--~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 287 G--GNLQRFDVSAYANNK 302 (313)
T ss_dssp S--TTGGGSCGGGTCSSS
T ss_pred c--ccCCCCCHHHhCCCc
Confidence 2 333445555555554
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-43 Score=365.31 Aligned_cols=197 Identities=19% Similarity=0.347 Sum_probs=161.5
Q ss_pred CCCCccceeecCCcceEEEEEEcC-C----cEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG-G----IPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~-g----~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
..|+..++||+|+||+||+|++.+ + ..||||+++..... .++|.+|+++|++++|||||+++|+|.+ ++..+
T Consensus 7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~-~~~~~ 85 (283)
T d1mqba_ 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-YKPMM 85 (283)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSEE
T ss_pred HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec-CCceE
Confidence 357788999999999999998643 2 47999999654332 4579999999999999999999998876 56899
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+|||||++|++.+++..... .++|.++..++.|||.||+|||+. +||||||||+|||++.++.+||+|||+
T Consensus 86 ~v~e~~~~~~l~~~~~~~~~------~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGl 156 (283)
T d1mqba_ 86 IITEYMENGALDKFLREKDG------EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGL 156 (283)
T ss_dssp EEEECCTTEEHHHHHHHTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred EEEEecccCcchhhhhcccc------cccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccch
Confidence 99999999999998875432 499999999999999999999997 999999999999999999999999999
Q ss_pred hhhcCCC------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 687 VCAQGGD------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 687 a~~~~~~------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+..... .....||..|+|||.+..+. ++.++|||||||++|||+||+.|+...
T Consensus 157 a~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~---------~~~~sDI~S~Gvil~el~t~~~~~~~~ 216 (283)
T d1mqba_ 157 SRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK---------FTSASDVWSFGIVMWEVMTYGERPYWE 216 (283)
T ss_dssp -----------------CCCGGGSCHHHHHSCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred hhcccCCCccceEeccCCCCccccCHHHHccCC---------CCCcccccccHHHHHHHHhCCCCcccc
Confidence 9875322 12345788999999876554 578999999999999999977776543
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-42 Score=370.81 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=166.6
Q ss_pred CCCCccceeecCCcceEEEEEEcC-C-----cEEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG-G-----IPVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~-g-----~~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|+..++||+|+||+||+|+... + ..||||++..... ..+.|.+|+++|.++ +|||||+++++|.+ ++.
T Consensus 37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-~~~ 115 (325)
T d1rjba_ 37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL-SGP 115 (325)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSS
T ss_pred HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEee-CCe
Confidence 568888999999999999998532 2 3799999865432 256899999999998 89999999998865 568
Q ss_pred EEEEEeeCCCCChhhhhhccCCCC----------------CcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCC
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTE----------------DDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQA 668 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~----------------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp 668 (766)
.|+|||||++|+|.++|+.++... .....++|..++.|+.|||+||+|||++ +||||||||
T Consensus 116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlKp 192 (325)
T d1rjba_ 116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAA 192 (325)
T ss_dssp CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSG
T ss_pred EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCch
Confidence 999999999999999997653210 1123589999999999999999999998 999999999
Q ss_pred CCeeeCCCCcEEeccchhhhhcCCCC-----ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-C
Q 004248 669 SSILLDDKFEVRLGSLSEVCAQGGDA-----HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-N 742 (766)
Q Consensus 669 ~NILl~~~~~~kl~DFG~a~~~~~~~-----~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G 742 (766)
+|||++.++.+||+|||+|+...... ....+|+.|+|||.+..+. ++.++|||||||++|||+| |
T Consensus 193 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~---------~~~~~DiwS~Gvil~emlt~g 263 (325)
T d1rjba_ 193 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGI---------YTIKSDVWSYGILLWEIFSLG 263 (325)
T ss_dssp GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHTTTS
T ss_pred hccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCC---------CCcceeccchhHHHHHHHhCC
Confidence 99999999999999999998653221 2346789999999876443 5789999999999999998 8
Q ss_pred CCCCCCC
Q 004248 743 NHLNLSS 749 (766)
Q Consensus 743 ~~p~~~~ 749 (766)
+.||...
T Consensus 264 ~~Pf~~~ 270 (325)
T d1rjba_ 264 VNPYPGI 270 (325)
T ss_dssp CCSSTTC
T ss_pred CCCCCCC
Confidence 9999543
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-43 Score=361.22 Aligned_cols=197 Identities=21% Similarity=0.331 Sum_probs=161.1
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYMP 613 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~~ 613 (766)
++|+..+.||+|+||.||+|+.. |++||||+++... ..++|.+|++++++++|||||+++|+|.+..+..|+||||++
T Consensus 7 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~-~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~ 84 (262)
T d1byga_ 7 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA 84 (262)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC---HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred HHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccC
Confidence 45777899999999999999985 7789999996543 356799999999999999999999988765566899999999
Q ss_pred CCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCCC
Q 004248 614 NGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGGD 693 (766)
Q Consensus 614 ~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~~ 693 (766)
+|+|.++|+.+.. ..++|..+++|+.|||.||+|||+. +||||||||+|||++.++.+|++|||+++.....
T Consensus 85 ~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~ 156 (262)
T d1byga_ 85 KGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 156 (262)
T ss_dssp TEEHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCCC
Confidence 9999999975432 3489999999999999999999997 9999999999999999999999999999987666
Q ss_pred CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCC
Q 004248 694 AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSS 749 (766)
Q Consensus 694 ~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~ 749 (766)
.....+|..|+|||....+. +++++|||||||++|||+| |+.||...
T Consensus 157 ~~~~~~~~~y~aPE~l~~~~---------~t~~sDIwSfG~il~el~t~~~~p~~~~ 204 (262)
T d1byga_ 157 QDTGKLPVKWTAPEALREKK---------FSTKSDVWSFGILLWEIYSFGRVPYPRI 204 (262)
T ss_dssp -----CCTTTSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred CccccccccCCChHHHhCCC---------CChHHHHHhHHHHHHHHHHCCCCCCCCC
Confidence 66667888999999876543 5889999999999999998 67777543
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-42 Score=365.27 Aligned_cols=196 Identities=18% Similarity=0.209 Sum_probs=170.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccc----cCHHHHHHHHHHHh-hcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQS----VKTEAYLLELDFFS-KVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~----~~~~~~~~E~~~l~-~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..++||+|+||+||+|+. .+|+.||||+++... ...+.+.+|..++. .++|||||++++++.+ ++..|+
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~-~~~~yi 80 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT-KENLFF 80 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-SSEEEE
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEcc-CCceeE
Confidence 5789999999999999999995 579999999997542 22456778888765 6899999999997765 578999
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|||||++|+|.++++.... +++.++..++.||+.||+|||++ +||||||||+|||+++++++||+|||+|
T Consensus 81 vmEy~~~g~L~~~i~~~~~-------~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a 150 (320)
T d1xjda_ 81 VMEYLNGGDLMYHIQSCHK-------FDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMC 150 (320)
T ss_dssp EEECCTTCBHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred EEeecCCCcHHHHhhccCC-------CCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchh
Confidence 9999999999999986543 89999999999999999999998 9999999999999999999999999999
Q ss_pred hhcC---CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQG---GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~---~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+... .......||+.|+|||.+.... ++.++||||+||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlGvilyemltG~~PF~~~ 206 (320)
T d1xjda_ 151 KENMLGDAKTNTFCGTPDYIAPEILLGQK---------YNHSVDWWSFGVLLYEMLIGQSPFHGQ 206 (320)
T ss_dssp BCCCCTTCCBCCCCSCGGGCCHHHHTTCC---------BCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred hhcccccccccccCCCCCcCCHHHHcCCC---------CCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence 8653 2234467899999999987654 478999999999999999999999543
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-42 Score=365.38 Aligned_cols=197 Identities=11% Similarity=0.155 Sum_probs=172.1
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|+..+.||+|+||+||+|+. .+|+.||||.++......+.+.+|+++|++++|||||++++++.+ ++..|+|||||
T Consensus 5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-~~~~~lvmE~~ 83 (321)
T d1tkia_ 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-MEELVMIFEFI 83 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-TTEEEEEECCC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-CCEEEEEEecC
Confidence 5788999999999999999995 579999999998766556679999999999999999999997765 67899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCC--CcEEeccchhhhhc
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDK--FEVRLGSLSEVCAQ 690 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~--~~~kl~DFG~a~~~ 690 (766)
++|+|.++|.+++ ..+++.++..|+.||+.||+|||+. +||||||||+|||++.+ ..+||+|||+++..
T Consensus 84 ~gg~L~~~i~~~~------~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~ 154 (321)
T d1tkia_ 84 SGLDIFERINTSA------FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL 154 (321)
T ss_dssp CCCBHHHHHTSSS------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred CCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhcc
Confidence 9999999997543 2489999999999999999999998 99999999999999854 58999999999876
Q ss_pred CCC--CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD--AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~--~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....+|+.|+|||...... ++.++||||+||++|||+||+.||...
T Consensus 155 ~~~~~~~~~~~t~~y~ape~~~~~~---------~~~~~DiWSlGvily~ll~G~~Pf~~~ 206 (321)
T d1tkia_ 155 KPGDNFRLLFTAPEYYAPEVHQHDV---------VSTATDMWSLGTLVYVLLSGINPFLAE 206 (321)
T ss_dssp CTTCEEEEEESCGGGSCHHHHTTCE---------ECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ccCCcccccccccccccchhccCCC---------CCchhhcccHHHHHHHHHhCCCCCCCC
Confidence 432 34557899999999876544 478999999999999999999999644
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=3.3e-42 Score=358.67 Aligned_cols=202 Identities=23% Similarity=0.261 Sum_probs=172.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----------HHHHHHHHHHHhhcC-CCCcccceeEEEec
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----------TEAYLLELDFFSKVS-HARLVPLLGHCMER 601 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----------~~~~~~E~~~l~~l~-H~niv~l~~~~~~~ 601 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .+.+.+|+++|++++ |||||++++++.+
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~- 81 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET- 81 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-
T ss_pred ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc-
Confidence 5789999999999999999995 67999999999764321 246889999999997 9999999997765
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
++..|+|||||++|||.++|..++ .+++.++..++.||++||+|||+. +||||||||+|||++.++.+||
T Consensus 82 ~~~~~ivmE~~~~g~L~~~l~~~~-------~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl 151 (277)
T d1phka_ 82 NTFFFLVFDLMKKGELFDYLTEKV-------TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKL 151 (277)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEE
T ss_pred CcceEEEEEcCCCchHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEE
Confidence 678999999999999999997654 399999999999999999999998 9999999999999999999999
Q ss_pred ccchhhhhcCC--CCccceeeecccCCCCCCCCcee-eeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 682 GSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSG-MVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 682 ~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g-~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+|||+++.... ......||..|+|||.+.+.... ... ++.++||||+||++|||+||+.||...+
T Consensus 152 ~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~----~~~~~DiwslGvilyeml~g~~Pf~~~~ 219 (277)
T d1phka_ 152 TDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPG----YGKEVDMWSTGVIMYTLLAGSPPFWHRK 219 (277)
T ss_dssp CCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCC----BCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred ccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCC----CCchheEcccchhhhhhccCCCCCCCCC
Confidence 99999987643 34456789999999976432111 111 5889999999999999999999996543
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=5.4e-42 Score=358.04 Aligned_cols=197 Identities=13% Similarity=0.164 Sum_probs=164.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCC---cE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMEREN---EK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~---~~ 605 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++..... .++|.+|++++++++|||||++++++...+. ..
T Consensus 7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~ 86 (277)
T d1o6ya_ 7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 86 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence 5699999999999999999994 68999999999764432 4579999999999999999999998765332 37
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
|+|||||++|+|.+++...+ .++|.++..|+.||+.||+|||+. +||||||||+|||++.++..|++|||
T Consensus 87 ~lvmE~~~g~~L~~~~~~~~-------~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~ 156 (277)
T d1o6ya_ 87 YIVMEYVDGVTLRDIVHTEG-------PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFG 156 (277)
T ss_dssp EEEEECCCEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCT
T ss_pred EEEEECCCCCEehhhhcccC-------CCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhh
Confidence 99999999999999987654 399999999999999999999997 99999999999999999999999999
Q ss_pred hhhhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 686 EVCAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 686 ~a~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.++.... .....+||+.|+|||.+.... +++++||||+||++|||+||+.||...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~---------~~~~~DiwSlGvilyelltG~~Pf~~~ 217 (277)
T d1o6ya_ 157 IARAIADSGNSVTQTAAVIGTAQYLSPEQARGDS---------VDARSDVYSLGCVLYEVLTGEPPFTGD 217 (277)
T ss_dssp TCEECC----------------TTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred hhhhhccccccccccccccCcccccCHHHHcCCC---------CCcceecccchHHHHHHHhCCCCCCCc
Confidence 9875421 233457899999999886544 478999999999999999999999543
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-42 Score=363.09 Aligned_cols=192 Identities=18% Similarity=0.228 Sum_probs=161.4
Q ss_pred ccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC------HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 538 DANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK------TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
..++||+|+||+||+|+. .+|+.||||+++..... .+.+.+|+++|++++|||||++++++.. ++..|+|||
T Consensus 2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~-~~~~~ivmE 80 (299)
T d1ua2a_ 2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH-KSNISLVFD 80 (299)
T ss_dssp EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC-TTCCEEEEE
T ss_pred cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCceeehhh
Confidence 467899999999999994 67999999999654322 2468999999999999999999997765 568999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
||++|++..+...+. .+++.++..++.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+..
T Consensus 81 ~~~~~~~~~~~~~~~-------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~ 150 (299)
T d1ua2a_ 81 FMETDLEVIIKDNSL-------VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSF 150 (299)
T ss_dssp CCSEEHHHHHTTCCS-------SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred hhcchHHhhhhhccc-------CCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCcccccc
Confidence 999887776664332 488899999999999999999998 9999999999999999999999999999876
Q ss_pred CC---CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 691 GG---DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 691 ~~---~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.. .....++|+.|+|||.+..... ++.++||||+||++|||+||+.||..
T Consensus 151 ~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DiwSlGvil~el~~g~~pf~~ 203 (299)
T d1ua2a_ 151 GSPNRAYTHQVVTRWYRAPELLFGARM--------YGVGVDMWAVGCILAELLLRVPFLPG 203 (299)
T ss_dssp TSCCCCCCCSCCCCTTCCHHHHTTCSC--------CCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCcccccceecChhhccHHHHccCCC--------CChhhhhhhcchHHHHHHhCcCCCCC
Confidence 43 2344578999999998754432 57899999999999999999988843
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-41 Score=364.40 Aligned_cols=195 Identities=13% Similarity=0.164 Sum_probs=165.6
Q ss_pred hCCCCccc-eeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhc-CCCCcccceeEEEec---CCcEE
Q 004248 533 TGDFSDAN-LIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKV-SHARLVPLLGHCMER---ENEKF 606 (766)
Q Consensus 533 ~~~~~~~~-~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~---~~~~~ 606 (766)
.++|.... +||+|+||+||+|+. .+|+.||||+++. .+.+.+|++++.++ +|||||++++++.+. ++.+|
T Consensus 10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ 85 (335)
T d2ozaa1 10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 85 (335)
T ss_dssp GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence 35787764 699999999999994 6799999999863 35678899997665 899999999976531 34689
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEecc
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLGS 683 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~D 683 (766)
+|||||+||+|.++|.+++. ..+++.++..|+.||+.||+|||+. +|+||||||+|||+++ ++.+||+|
T Consensus 86 ivmEy~~gg~L~~~i~~~~~-----~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~D 157 (335)
T d2ozaa1 86 IVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTD 157 (335)
T ss_dssp EEEECCCSEEHHHHHHSCSC-----CCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECC
T ss_pred EEEECCCCCcHHHHHHhcCC-----CCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccc
Confidence 99999999999999976432 3599999999999999999999998 9999999999999985 46799999
Q ss_pred chhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 684 LSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 684 FG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
||+|+... .......||+.|+|||.+.+.. ++.++||||+||++|||+||+.||..
T Consensus 158 FG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------y~~~~DiwSlGvily~lltg~~Pf~~ 215 (335)
T d2ozaa1 158 FGFAKETTSHNSLTTPCYTPYYVAPEVLGPEK---------YDKSCDMWSLGVIMYILLCGYPPFYS 215 (335)
T ss_dssp CTTCEECCCCCCCCCCSCCCSSCCCCCCCGGG---------GSHHHHHHHHHHHHHHHTTSSCSCEE
T ss_pred cceeeeccCCCccccccCCcccCCcHHHcCCC---------CCHHHHHHhhchhHHHHhhCCCCCCC
Confidence 99998663 3345567999999999986543 57899999999999999999999954
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-41 Score=362.23 Aligned_cols=195 Identities=19% Similarity=0.311 Sum_probs=162.8
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc----EEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI----PVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKF 606 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~----~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 606 (766)
.+|+..++||+|+||+||+|+. .+|+ +||||+++.... ..++|.+|+++|++++|||||+++|+|.+ +..+
T Consensus 9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~--~~~~ 86 (317)
T d1xkka_ 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT--STVQ 86 (317)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEE
T ss_pred HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--CCee
Confidence 4689999999999999999985 4443 689998864332 36789999999999999999999998875 4688
Q ss_pred EEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchh
Q 004248 607 LVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSE 686 (766)
Q Consensus 607 lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~ 686 (766)
+++||+.+|+|.+++..+. ..++|..+..++.|||+||+|||++ +||||||||+|||++.++++||+|||+
T Consensus 87 ~v~e~~~~~~l~~~~~~~~------~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGl 157 (317)
T d1xkka_ 87 LITQLMPFGCLLDYVREHK------DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGL 157 (317)
T ss_dssp EEEECCTTCBHHHHHHHTS------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSH
T ss_pred EEEEeccCCcccccccccc------cCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeecccc
Confidence 9999999999999887654 2589999999999999999999998 999999999999999999999999999
Q ss_pred hhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 687 VCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 687 a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
|+..... .....||..|+|||.+..+. ++.++|||||||++|||+| |+.||..
T Consensus 158 a~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~---------~~~~sDvwS~Gvil~el~t~g~~p~~~ 216 (317)
T d1xkka_ 158 AKLLGAEEKEYHAEGGKVPIKWMALESILHRI---------YTHQSDVWSYGVTVWELMTFGSKPYDG 216 (317)
T ss_dssp HHHTTTTCC--------CCTTTSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred ceecccccccccccccccCccccChHHHhcCC---------CChhhhhhhHHHHHHHHHHCCCCCCCC
Confidence 9876322 22335789999999876544 5789999999999999999 7888754
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-41 Score=357.06 Aligned_cols=197 Identities=19% Similarity=0.278 Sum_probs=166.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..+.||+|+||+||+|+. .+|+.||||+++.... ..+++.+|+++|++++|||||++++++.+ ++..|+||
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~-~~~~~iv~ 80 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-ENKLYLVF 80 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-TTEEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEecccccc-ccceeEEE
Confidence 5799999999999999999994 6799999999965432 25689999999999999999999998765 67899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+.+ ++.+++..... ..+++.++..++.|++.||+|||+. +||||||||+|||++.++.+||+|||.|+.
T Consensus 81 e~~~~-~~~~~~~~~~~-----~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~ 151 (298)
T d1gz8a_ 81 EFLHQ-DLKKFMDASAL-----TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARA 151 (298)
T ss_dssp ECCSE-EHHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHH
T ss_pred eecCC-chhhhhhhhcc-----cCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCccee
Confidence 99985 55555543322 3499999999999999999999998 999999999999999999999999999987
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
.... .....+|+.|+|||......+ .+.++||||+||++|||+||+.||..
T Consensus 152 ~~~~~~~~~~~~gt~~y~apE~~~~~~~--------~~~~~DiwSlGvily~m~~G~~Pf~~ 205 (298)
T d1gz8a_ 152 FGVPVRTYTHEVVTLWYRAPEILLGCKY--------YSTAVDIWSLGCIFAEMVTRRALFPG 205 (298)
T ss_dssp HCCCSBCTTCCBCCCTTCCHHHHTTCSS--------CCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ccCCcccceeecccceeeehhhhccccC--------CCccccccccchhhhHHhhCCCCCCC
Confidence 6432 344578999999998765543 47899999999999999999999954
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=6.3e-42 Score=361.83 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=169.5
Q ss_pred HHHHhCCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEe
Q 004248 529 LLAATGDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCME 600 (766)
Q Consensus 529 l~~~~~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~ 600 (766)
++-..++|+..+.||+|+||+||+|+.. +++.||||+++..... .++|.+|+++|++++|||||+++++|..
T Consensus 8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~ 87 (301)
T d1lufa_ 8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV 87 (301)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeecc
Confidence 3334568999999999999999999853 4578999999754433 5679999999999999999999998875
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCC-----------------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEe
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNT-----------------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVH 663 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~-----------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiH 663 (766)
.+..++||||+++|+|.++++..... ......++|.++..|+.|+|.||+|||+. +|||
T Consensus 88 -~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~ivH 163 (301)
T d1lufa_ 88 -GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVH 163 (301)
T ss_dssp -SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred -CCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---CeEe
Confidence 56899999999999999999753210 11123589999999999999999999997 9999
Q ss_pred cCCCCCCeeeCCCCcEEeccchhhhhcCC-----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHH
Q 004248 664 RDVQASSILLDDKFEVRLGSLSEVCAQGG-----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFS 738 (766)
Q Consensus 664 rDlKp~NILl~~~~~~kl~DFG~a~~~~~-----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~e 738 (766)
|||||+|||+|.++++||+|||+|+.... ......+|..|+|||.+.... +|+|+|||||||++||
T Consensus 164 rDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---------~t~ksDVwS~Gvvl~e 234 (301)
T d1lufa_ 164 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNR---------YTTESDVWAYGVVLWE 234 (301)
T ss_dssp SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHH
T ss_pred eEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCC---------CChhhhhccchhhHHH
Confidence 99999999999999999999999986522 223456788999999876443 5899999999999999
Q ss_pred HhcCCC-CCC
Q 004248 739 AIFNNH-LNL 747 (766)
Q Consensus 739 lltG~~-p~~ 747 (766)
|+||.. ||.
T Consensus 235 ll~~~~~p~~ 244 (301)
T d1lufa_ 235 IFSYGLQPYY 244 (301)
T ss_dssp HHTTTCCTTT
T ss_pred HHccCCCCCC
Confidence 999964 553
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-41 Score=353.15 Aligned_cols=197 Identities=22% Similarity=0.318 Sum_probs=158.1
Q ss_pred CCCCccceeecCCcceEEEEEEcC----CcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..+.||+|+||.||+|+... +..||||+++..... .+.|.+|+++|++++|||||++++++. ++..|+
T Consensus 7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~--~~~~~i 84 (273)
T d1mp8a_ 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT--ENPVWI 84 (273)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--SSSCEE
T ss_pred HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe--cCeEEE
Confidence 468888999999999999998532 457999998643322 567999999999999999999999874 357899
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
|||||++|+|.+++..... .++|.++..++.||++||+|||+. +||||||||+||++++++.+||+|||+|
T Consensus 85 v~E~~~~g~l~~~~~~~~~------~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a 155 (273)
T d1mp8a_ 85 IMELCTLGELRSFLQVRKY------SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLS 155 (273)
T ss_dssp EEECCTTEEHHHHHHHTTT------TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC----
T ss_pred EEEeccCCcHHhhhhccCC------CCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhh
Confidence 9999999999998875442 489999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCC----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCCCc
Q 004248 688 CAQGG----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLSSR 750 (766)
Q Consensus 688 ~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~~~ 750 (766)
+.... ......+|+.|+|||.+.... ++.++|||||||++|||+| |++||...+
T Consensus 156 ~~~~~~~~~~~~~~~gt~~y~apE~l~~~~---------~~~~~DiwSlGvil~e~lt~g~~P~~~~~ 214 (273)
T d1mp8a_ 156 RYMEDSTYYKASKGKLPIKWMAPESINFRR---------FTSASDVWMFGVCMWEILMHGVKPFQGVK 214 (273)
T ss_dssp ---------------CCGGGCCHHHHHHCC---------CSHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred eeccCCcceeccceecCcccchhhHhccCC---------CCCccccccchHHHHHHHhcCCCCCCCCC
Confidence 87532 223446788999999876544 5789999999999999998 898886443
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-41 Score=356.94 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=161.4
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCC---cEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMEREN---EKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~---~~~lV~E 610 (766)
.+|...+.||+|+||.||+|+. +|+.||||+++.+......+.+|+..+.+++|||||+++++|.+.+. .+|+|||
T Consensus 3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E 81 (303)
T d1vjya_ 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence 3466778999999999999986 57899999997554333233445556667899999999999986432 5799999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC-----CCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC-----TLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
||++|+|.++|++. .++|.++.+++.|+|.||+|+|+.. .++||||||||+||||++++.+||+|||
T Consensus 82 y~~~g~L~~~l~~~--------~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFG 153 (303)
T d1vjya_ 82 YHEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp CCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCT
T ss_pred cccCCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecC
Confidence 99999999999753 3899999999999999999999731 3599999999999999999999999999
Q ss_pred hhhhcCC-------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCC
Q 004248 686 EVCAQGG-------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNL 747 (766)
Q Consensus 686 ~a~~~~~-------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~ 747 (766)
+++.... ......||+.|+|||.+....... ...++.|+|||||||++|||+||+.||.
T Consensus 154 l~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~~~~~k~Di~S~Gvvl~el~tg~~~~~ 219 (303)
T d1vjya_ 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMK---HFESFKRADIYAMGLVFWEIARRCSIGG 219 (303)
T ss_dssp TCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTT---CHHHHHHHHHHHHHHHHHHHHHTBCBTT
T ss_pred ccccccCCCcceeccccceecccCcCChhhcccccccc---CCCcCcchhhhhhHHHHHHHhhCCCCCC
Confidence 9986632 123457899999999765432110 0125889999999999999999998774
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6.3e-41 Score=351.69 Aligned_cols=197 Identities=16% Similarity=0.235 Sum_probs=168.1
Q ss_pred CCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~E 610 (766)
++|+..++||+|+||+||+|+..+|+.||||+++..... .+++.+|+.+|++++|||||++++++.. ++..++|||
T Consensus 2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-~~~~~i~~e 80 (286)
T d1ob3a_ 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-KKRLVLVFE 80 (286)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-SSCEEEEEE
T ss_pred CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeeccc-CCceeEEEE
Confidence 578899999999999999999989999999999654322 5689999999999999999999997765 678999999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhc
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQ 690 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~ 690 (766)
|+.++.+..+....+ .+++.++..|+.||+.||+|||+. +||||||||+|||++.++.+|++|||.|...
T Consensus 81 ~~~~~~~~~~~~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~ 150 (286)
T d1ob3a_ 81 HLDQDLKKLLDVCEG-------GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAF 150 (286)
T ss_dssp CCSEEHHHHHHTSTT-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHH
T ss_pred eehhhhHHHHHhhcC-------CcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceec
Confidence 999877766655433 499999999999999999999997 9999999999999999999999999999876
Q ss_pred CCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 691 GGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 691 ~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
... .....+++.|+|||.+....+ ++.++||||+||++|||+||+.||...
T Consensus 151 ~~~~~~~~~~~~~~~y~~pE~~~~~~~--------~~~~~DiwslGv~l~el~~G~~pf~~~ 204 (286)
T d1ob3a_ 151 GIPVRKYTHEIVTLWYRAPDVLMGSKK--------YSTTIDIWSVGCIFAEMVNGTPLFPGV 204 (286)
T ss_dssp CC---------CCCTTCCHHHHTTCCS--------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccCccccceecccchhhhHHHHhCCCC--------CCcceeehhcCcHHHHHHHCCCCCCCC
Confidence 432 334468899999998765432 578999999999999999999999543
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-41 Score=354.04 Aligned_cols=193 Identities=22% Similarity=0.364 Sum_probs=163.6
Q ss_pred cceeecCCcceEEEEEEcC----CcEEEEEEeecccc--CHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 539 ANLIKNGHSGDLFRGILEG----GIPVVIKRIDLQSV--KTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~----g~~vavK~l~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
.++||+|+||+||+|++.. ...||||+++.... ..++|.+|+++|++++|||||+++|+|.+.++..++|||||
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~ 111 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM 111 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence 4689999999999999643 23699999964322 25689999999999999999999999887667899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhhcCC
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCAQGG 692 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~~~~ 692 (766)
++|+|.++++.... .++|..+.+++.|+|.||.|||+. +|+||||||+|||+|+++.+||+|||+++....
T Consensus 112 ~~g~l~~~~~~~~~------~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~ 182 (311)
T d1r0pa_ 112 KHGDLRNFIRNETH------NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 182 (311)
T ss_dssp TTCBHHHHHHCTTC------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTT
T ss_pred ecCchhhhhccccc------cchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhccc
Confidence 99999999875442 478999999999999999999997 999999999999999999999999999986532
Q ss_pred C-------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 693 D-------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 693 ~-------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
. .....+|..|+|||....+. ++.++|||||||++|||+||+.||...
T Consensus 183 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~ksDI~SfGivl~El~t~~~p~~~~ 237 (311)
T d1r0pa_ 183 KEFDSVHNKTGAKLPVKWMALESLQTQK---------FTTKSDVWSFGVLLWELMTRGAPPYPD 237 (311)
T ss_dssp TTCCCTTCTTCSSCCGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSCC-
T ss_pred cccccceecccccccccccChHHHhcCC---------CCChhHhhhhHHHHHHHHHCCCCCCCC
Confidence 1 22346789999999875443 588999999999999999988888544
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-41 Score=353.24 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=167.4
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC-------HHHHHHHHHHHhhcC--CCCcccceeEEEecCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK-------TEAYLLELDFFSKVS--HARLVPLLGHCMEREN 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~-------~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~ 603 (766)
++|+..++||+|+||+||+|+. .+|+.||||+++..... ..++.+|+++|++++ |||||++++++.+ ++
T Consensus 4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~-~~ 82 (273)
T d1xwsa_ 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER-PD 82 (273)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC-SS
T ss_pred CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee-CC
Confidence 5788999999999999999994 67999999999754321 234778999999997 8999999997765 57
Q ss_pred cEEEEEeeCCC-CChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-CCcEEe
Q 004248 604 EKFLVYKYMPN-GDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-KFEVRL 681 (766)
Q Consensus 604 ~~~lV~Ey~~~-GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl 681 (766)
..|+||||+.+ +++.+++.++. .+++.++..++.|++.||+|||+. +||||||||+|||++. ++.+||
T Consensus 83 ~~~lv~e~~~~~~~l~~~~~~~~-------~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl 152 (273)
T d1xwsa_ 83 SFVLILERPEPVQDLFDFITERG-------ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKL 152 (273)
T ss_dssp EEEEEEECCSSEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred eEEEEEEeccCcchHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEE
Confidence 89999999986 57888887654 399999999999999999999998 9999999999999985 479999
Q ss_pred ccchhhhhcCC-CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 682 GSLSEVCAQGG-DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~-~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+|||+|+.... ......||+.|+|||.+....+ ++.++||||+||++|||+||+.||..
T Consensus 153 ~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~--------~~~~~DiwSlGvilyell~g~~Pf~~ 212 (273)
T d1xwsa_ 153 IDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRY--------HGRSAAVWSLGILLYDMVCGDIPFEH 212 (273)
T ss_dssp CCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCB--------CHHHHHHHHHHHHHHHHHHSSCSCCS
T ss_pred CccccceecccccccccccCCCcCCHHHHcCCCC--------CCcccccccceeeehhHhhCCCCCCC
Confidence 99999987643 3455679999999998765443 46789999999999999999999954
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-41 Score=356.64 Aligned_cols=202 Identities=18% Similarity=0.224 Sum_probs=158.9
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|+..++||+|+||+||+|+.. +++.||||+++..... .+++.+|.+++.++ +|+|||.+++++.+.++.
T Consensus 13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~ 92 (299)
T d1ywna1 13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP 92 (299)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCe
Confidence 56888999999999999999842 3578999999754332 56788899988887 689999999988776667
Q ss_pred EEEEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD 675 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~ 675 (766)
.++|||||++|+|.++|+.+... ......++|.+++.++.|||+||+|||++ +||||||||+|||+++
T Consensus 93 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~ 169 (299)
T d1ywna1 93 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSE 169 (299)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECG
T ss_pred EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECC
Confidence 89999999999999999754321 01123589999999999999999999998 9999999999999999
Q ss_pred CCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCC-CCCC
Q 004248 676 KFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN-HLNL 747 (766)
Q Consensus 676 ~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~-~p~~ 747 (766)
++++||+|||+|+..... .....||+.|+|||.+.... ++.++|||||||++|||+||. .||.
T Consensus 170 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~---------~~~~sDiwS~Gvil~ellt~~~~p~~ 238 (299)
T d1ywna1 170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV---------YTIQSDVWSFGVLLWEIFSLGASPYP 238 (299)
T ss_dssp GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred CCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCC---------CCcccceeehHHHHHHHHhCCCCCCC
Confidence 999999999999865321 23457899999999876543 578999999999999999975 4664
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-41 Score=348.44 Aligned_cols=195 Identities=20% Similarity=0.333 Sum_probs=156.3
Q ss_pred CCCCccceeecCCcceEEEEEEc--CC--cEEEEEEeeccccC----HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--GG--IPVVIKRIDLQSVK----TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--~g--~~vavK~l~~~~~~----~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|+.. ++ ..||||+++..... .++|.+|+++|++++|||||+++|+|.+ +..
T Consensus 8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~--~~~ 85 (273)
T d1u46a_ 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT--PPM 85 (273)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSC
T ss_pred HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee--cch
Confidence 46888999999999999999843 23 47999998654321 4689999999999999999999998854 467
Q ss_pred EEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccch
Q 004248 606 FLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLS 685 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG 685 (766)
++|||||++|++.+++..+.. .++|..++.++.|||+||+|||++ +|+||||||+||+++.++++||+|||
T Consensus 86 ~lv~e~~~~~~l~~~~~~~~~------~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfG 156 (273)
T d1u46a_ 86 KMVTELAPLGSLLDRLRKHQG------HFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFG 156 (273)
T ss_dssp EEEEECCTTCBHHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCT
T ss_pred heeeeeecCcchhhhhhcccC------CCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccch
Confidence 999999999999998875432 499999999999999999999997 99999999999999999999999999
Q ss_pred hhhhcCCCC------ccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCCC
Q 004248 686 EVCAQGGDA------HQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNLS 748 (766)
Q Consensus 686 ~a~~~~~~~------~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~~ 748 (766)
+++...... ....++..|+|||.+.... ++.++|||||||++|||+| |+.||..
T Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~---------~~~~~Di~S~Gvil~emlt~G~~Pf~~ 217 (273)
T d1u46a_ 157 LMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT---------FSHASDTWMFGVTLWEMFTYGQEPWIG 217 (273)
T ss_dssp TCEECCC-CCEEEC-----CCGGGCCHHHHHHCE---------EEHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred hhhhcccCCCcceecCccccCcccCCHHHHhCCC---------CCcchhhhhhHHHHHHHHhCCCCCCCC
Confidence 998763321 2234677899999886543 5789999999999999998 8999853
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.1e-41 Score=354.10 Aligned_cols=200 Identities=21% Similarity=0.358 Sum_probs=163.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCc--EEEEEEeecccc--CHHHHHHHHHHHhhc-CCCCcccceeEEEecCCcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGI--PVVIKRIDLQSV--KTEAYLLELDFFSKV-SHARLVPLLGHCMERENEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~--~vavK~l~~~~~--~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~l 607 (766)
++|+..++||+|+||+||+|+. .+|. .||||+++.... ..++|.+|+++|+++ +|||||+++|+|.+ ++..|+
T Consensus 10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-~~~~~i 88 (309)
T d1fvra_ 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-RGYLYL 88 (309)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEE-TTEEEE
T ss_pred HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEec-CCeeEE
Confidence 4677889999999999999985 4554 578888864332 245799999999999 79999999998876 578999
Q ss_pred EEeeCCCCChhhhhhccCC---------CCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 608 VYKYMPNGDLSSSLYRKTN---------TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~---------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
||||+++|+|.++|++... .......++|.++..++.|||+||.|+|+. +||||||||+|||++.++.
T Consensus 89 V~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~ 165 (309)
T d1fvra_ 89 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYV 165 (309)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGC
T ss_pred EEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCCc
Confidence 9999999999999975421 011234699999999999999999999998 9999999999999999999
Q ss_pred EEeccchhhhhcCC--CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCC
Q 004248 679 VRLGSLSEVCAQGG--DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLN 746 (766)
Q Consensus 679 ~kl~DFG~a~~~~~--~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~ 746 (766)
+||+|||+|+.... ......+|..|+|||.+..+. ++.++|||||||++|||+||..|+
T Consensus 166 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~---------~~~~sDvwSfGvil~ell~~~~~p 226 (309)
T d1fvra_ 166 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV---------YTTNSDVWSYGVLLWEIVSLGGTP 226 (309)
T ss_dssp EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE---------ECHHHHHHHHHHHHHHHHTTSCCT
T ss_pred eEEccccccccccccccccceecCCcccchHHhccCC---------CCccceeehhHHHHHHHHhcCCCC
Confidence 99999999986532 233456889999999875443 588999999999999999976544
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=351.66 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=164.9
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecC-----C
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERE-----N 603 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-----~ 603 (766)
.++|+..++||+|+||+||+|.. .+|+.||||+++..... .+++.+|+++|++++|||||+++++|...+ .
T Consensus 17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~ 96 (346)
T d1cm8a_ 17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 96 (346)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence 35788999999999999999995 67999999999754333 457899999999999999999999886532 2
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
+.|+||||| +++|..+++.. .+++..++.++.|++.||+|||++ +||||||||+|||++.++.+|++|
T Consensus 97 ~~~lv~e~~-~~~l~~~~~~~--------~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~D 164 (346)
T d1cm8a_ 97 DFYLVMPFM-GTDLGKLMKHE--------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILD 164 (346)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECC
T ss_pred eEEEEEecc-cccHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhccccccccccc
Confidence 579999999 45777776532 399999999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 684 LSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 684 FG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
||+|+..+...+...+|+.|+|||.+....+ ++.++||||+||++|||++|+.||...
T Consensus 165 fg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwSlGvil~ell~g~~pf~~~ 222 (346)
T d1cm8a_ 165 FGLARQADSEMTGYVVTRWYRAPEVILNWMR--------YTQTVDIWSVGCIMAEMITGKTLFKGS 222 (346)
T ss_dssp CTTCEECCSSCCSSCSCGGGCCTHHHHTTTC--------CCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccceeccCCccccccccccccCHHHHcCCCC--------CCccchhhcchHHHHHHHHCcCCCCCC
Confidence 9999988777777889999999998765432 578999999999999999999999544
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-40 Score=348.80 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=164.7
Q ss_pred hCCCCccceeecCCcceEEEEEE-cC-CcEEEEEEeeccccC---HHHHHHHHHHHhhc---CCCCcccceeEEEec---
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EG-GIPVVIKRIDLQSVK---TEAYLLELDFFSKV---SHARLVPLLGHCMER--- 601 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~-g~~vavK~l~~~~~~---~~~~~~E~~~l~~l---~H~niv~l~~~~~~~--- 601 (766)
.++|+..++||+|+||+||+|+. .+ ++.||||+++..... ..++.+|+++|+.+ +|||||+++++|...
T Consensus 6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~ 85 (305)
T d1blxa_ 6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD 85 (305)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence 46899999999999999999995 44 678999999654322 34577888887766 799999999987532
Q ss_pred -CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEE
Q 004248 602 -ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVR 680 (766)
Q Consensus 602 -~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k 680 (766)
+...+++||||++|++........ ..+++.....++.|++.||+|||++ +||||||||+|||+++++.+|
T Consensus 86 ~~~~~~~~~e~~~~~~~~~~~~~~~------~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~k 156 (305)
T d1blxa_ 86 RETKLTLVFEHVDQDLTTYLDKVPE------PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIK 156 (305)
T ss_dssp SEEEEEEEEECCSCBHHHHHHHSCT------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred cCceEEEEEEeccCCchhhhhhccC------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCee
Confidence 246899999999877654443322 3489999999999999999999998 999999999999999999999
Q ss_pred eccchhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 681 LGSLSEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 681 l~DFG~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
|+|||+++... .......||+.|+|||.+.... +++++||||+||++|||+||+.||...
T Consensus 157 l~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~---------y~~~~DiwSlG~il~ell~g~~pf~~~ 218 (305)
T d1blxa_ 157 LADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS---------YATPVDLWSVGCIFAEMFRRKPLFRGS 218 (305)
T ss_dssp ECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCC---------CCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ecchhhhhhhcccccCCCcccChhhcCcchhcCCC---------CChhehhhchHHHHHHHHHCCCCCCCC
Confidence 99999987653 2344567999999999886654 478999999999999999999999643
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-40 Score=347.39 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=170.0
Q ss_pred CCCCccceeecCCcceEEEEEE------cCCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecCCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL------EGGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~------~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 604 (766)
++|+..++||+|+||.||+|+. .+++.||||+++..... ..+|.+|+++++++ +|||||+++++|.+ ++.
T Consensus 23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~-~~~ 101 (311)
T d1t46a_ 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI-GGP 101 (311)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSS
T ss_pred HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEee-CCE
Confidence 5678889999999999999984 34679999999764432 55799999999999 69999999998865 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCC-----------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNT-----------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~-----------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
.++|||||++|+|.+++++.... ......++|..+..++.|||+||+|||++ +||||||||+||++
T Consensus 102 ~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~ 178 (311)
T d1t46a_ 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILL 178 (311)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred EEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeecccccccccc
Confidence 99999999999999999865321 11223599999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+.++.+|++|||.++..... .....+|+.|+|||....+. ++.++|||||||++|||+|+..|++.
T Consensus 179 ~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DIwS~G~~l~ellt~g~p~~~ 249 (311)
T d1t46a_ 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCV---------YTFESDVWSYGIFLWELFSLGSSPYP 249 (311)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred cccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCC---------CCCcccccchHHHHHHHHhCCCCCCC
Confidence 99999999999999876432 12357799999999876443 57899999999999999996556544
Q ss_pred Cccc
Q 004248 749 SRFG 752 (766)
Q Consensus 749 ~~~~ 752 (766)
....
T Consensus 250 ~~~~ 253 (311)
T d1t46a_ 250 GMPV 253 (311)
T ss_dssp TCCS
T ss_pred CCCH
Confidence 4433
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-40 Score=348.78 Aligned_cols=200 Identities=20% Similarity=0.295 Sum_probs=166.7
Q ss_pred CCCCccceeecCCcceEEEEEEc------CCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecCCcE
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERENEK 605 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 605 (766)
++|+..+.||+|+||.||+|... +++.||||+++..... ...|.+|++++++++|||||+++++|.. ++..
T Consensus 20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-~~~~ 98 (308)
T d1p4oa_ 20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ-GQPT 98 (308)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS-SSSC
T ss_pred HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEec-CCce
Confidence 46778899999999999999853 3679999999754332 4579999999999999999999998865 5689
Q ss_pred EEEEeeCCCCChhhhhhccCC---CCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEec
Q 004248 606 FLVYKYMPNGDLSSSLYRKTN---TEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLG 682 (766)
Q Consensus 606 ~lV~Ey~~~GsL~~~l~~~~~---~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~ 682 (766)
++|||||++|+|.++++.... .......++|.++.+|+.|+|+||.|||++ +||||||||+|||+|+++++||+
T Consensus 99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~Kl~ 175 (308)
T d1p4oa_ 99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIG 175 (308)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEEC
T ss_pred eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEEEe
Confidence 999999999999999875321 011223579999999999999999999998 99999999999999999999999
Q ss_pred cchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCC-CCC
Q 004248 683 SLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNN-HLN 746 (766)
Q Consensus 683 DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~-~p~ 746 (766)
|||+|+..... .....+|+.|+|||....+. ++.++|||||||++|||+||+ .||
T Consensus 176 DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~---------~~~~~Dv~S~G~il~El~t~~~~p~ 236 (308)
T d1p4oa_ 176 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV---------FTTYSDVWSFGVVLWEIATLAEQPY 236 (308)
T ss_dssp CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC---------CCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred ecccceeccCCcceeeccceecccccCCHHHHccCC---------CCcccccccHHHHHHHHHhCCCCCC
Confidence 99999866322 23346789999999876544 578999999999999999996 455
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-39 Score=347.21 Aligned_cols=198 Identities=16% Similarity=0.196 Sum_probs=163.6
Q ss_pred CCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC--HHHHHHHHHHHhhcCCCCcccceeEEEecC---CcEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK--TEAYLLELDFFSKVSHARLVPLLGHCMERE---NEKFL 607 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l~H~niv~l~~~~~~~~---~~~~l 607 (766)
.+|+..+.||+|+||+||+|+ ..+|+.||||+++..... .+++.+|+++|++++|||||++++++.... ...++
T Consensus 8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~ 87 (345)
T d1pmea_ 8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY 87 (345)
T ss_dssp TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence 468899999999999999998 468999999999754332 567999999999999999999999875422 12355
Q ss_pred EEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhh
Q 004248 608 VYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEV 687 (766)
Q Consensus 608 V~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a 687 (766)
++||+.+|+|.+++..+ .+++..++.++.|++.||+|||++ +||||||||+|||+++++.+||+|||+|
T Consensus 88 l~~~~~~g~L~~~l~~~--------~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a 156 (345)
T d1pmea_ 88 LVTHLMGADLYKLLKTQ--------HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLA 156 (345)
T ss_dssp EEEECCCEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred EEEeecCCchhhhhhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCce
Confidence 56677799999999643 389999999999999999999998 9999999999999999999999999999
Q ss_pred hhcCC------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 688 CAQGG------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 688 ~~~~~------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
+.... .....++|+.|+|||.+..... ++.++||||+||++|||+||+.||...+
T Consensus 157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~--------~~~~~DiwSlG~il~eml~g~~pf~~~~ 217 (345)
T d1pmea_ 157 RVADPDHDHTGFLTEYVATRWYRAPEIMLNSKG--------YTKSIDIWSVGCILAEMLSNRPIFPGKH 217 (345)
T ss_dssp EECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCS--------CSTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred eeccCCCccceeeccccccceechHHHhhcCCC--------CCchhhhhccCceehHHhhCCCCCCCCC
Confidence 76421 2344578999999998754432 4789999999999999999999996543
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-39 Score=343.41 Aligned_cols=201 Identities=14% Similarity=0.244 Sum_probs=162.6
Q ss_pred CCCCccceeecCCcceEEEEEEc--------CCcEEEEEEeeccccC--HHHHHHHHHHHhhc-CCCCcccceeEEEecC
Q 004248 534 GDFSDANLIKNGHSGDLFRGILE--------GGIPVVIKRIDLQSVK--TEAYLLELDFFSKV-SHARLVPLLGHCMERE 602 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~~--------~g~~vavK~l~~~~~~--~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 602 (766)
++|+..+.||+|+||.||+|+.. ++..||||+++..... ..++.+|+..+.++ +|||||+++++|.+ +
T Consensus 13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~-~ 91 (299)
T d1fgka_ 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ-D 91 (299)
T ss_dssp GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc-C
Confidence 46778899999999999999842 2357999999765432 46799999999998 89999999998876 5
Q ss_pred CcEEEEEeeCCCCChhhhhhccCCC---------CCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeee
Q 004248 603 NEKFLVYKYMPNGDLSSSLYRKTNT---------EDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILL 673 (766)
Q Consensus 603 ~~~~lV~Ey~~~GsL~~~l~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl 673 (766)
+..++|||||++|+|.++|+.+... ......++|.++++++.|||.||+|||+. +||||||||+|||+
T Consensus 92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl 168 (299)
T d1fgka_ 92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV 168 (299)
T ss_dssp SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecccceee
Confidence 6899999999999999999765321 11234589999999999999999999998 99999999999999
Q ss_pred CCCCcEEeccchhhhhcCCC-----CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhc-CCCCCC
Q 004248 674 DDKFEVRLGSLSEVCAQGGD-----AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIF-NNHLNL 747 (766)
Q Consensus 674 ~~~~~~kl~DFG~a~~~~~~-----~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~ellt-G~~p~~ 747 (766)
+.++.+||+|||+++..... .....+|..|+|||.+..+. +++|+||||||||+|||+| |+.||.
T Consensus 169 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~---------y~~k~DiwS~Gvvl~ell~~g~~p~~ 239 (299)
T d1fgka_ 169 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRI---------YTHQSDVWSFGVLLWEIFTLGGSPYP 239 (299)
T ss_dssp CTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCC---------CCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCC---------CCchhhhHHhHHHHHHhccCCCCCCC
Confidence 99999999999999866322 23356788999999876543 5889999999999999998 677774
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-39 Score=339.95 Aligned_cols=200 Identities=17% Similarity=0.178 Sum_probs=171.7
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEE
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVY 609 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~ 609 (766)
++|+..++||+|+||+||+|+. .+|+.||||+++..... .+++.+|+++|++++|||||++++++.. .+..++|+
T Consensus 2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~-~~~~~iv~ 80 (292)
T d1unla_ 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-DKKLTLVF 80 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEEE
T ss_pred CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccc-ccceeEEe
Confidence 5789999999999999999995 67899999999755432 5689999999999999999999998876 56899999
Q ss_pred eeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccchhhhh
Q 004248 610 KYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSLSEVCA 689 (766)
Q Consensus 610 Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~~ 689 (766)
||+.+++|..++...+ .+++..+..++.|++.||+|||++ +||||||||+|||++.++.+||+|||.|+.
T Consensus 81 ~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~ 150 (292)
T d1unla_ 81 EFCDQDLKKYFDSCNG-------DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARA 150 (292)
T ss_dssp ECCSEEHHHHHHHTTT-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred eecccccccccccccc-------ccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhc
Confidence 9999999988886554 388999999999999999999998 999999999999999999999999999987
Q ss_pred cCCC---CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 690 QGGD---AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 690 ~~~~---~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
.... .....++..|+|||.+....+ ++.++||||+||++|||++|+.||+..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~--------~~~~~DiwSlG~il~ell~g~~p~~~~~~~ 208 (292)
T d1unla_ 151 FGIPVRCYSAEVVTLWYRPPDVLFGAKL--------YSTSIDMWSAGCIFAELANAGRPLFPGNDV 208 (292)
T ss_dssp CCSCCSCCCSCCSCGGGCCHHHHTTCSC--------CCTHHHHHHHHHHHHHHTTTSCCSCCCSSH
T ss_pred ccCCCccceeeccccchhhhhHhccCCC--------CCchhhccccchHHHHHhhCCCCCCCCCCH
Confidence 6332 233456788999997655432 478999999999999999999998655443
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-39 Score=343.63 Aligned_cols=198 Identities=15% Similarity=0.214 Sum_probs=163.7
Q ss_pred hCCCCccceeecCCcceEEEEEE-cCCcEEEEEEeecccc---CHHHHHHHHHHHhhcCCCCcccceeEEEec-------
Q 004248 533 TGDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSV---KTEAYLLELDFFSKVSHARLVPLLGHCMER------- 601 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~------- 601 (766)
.++|+..++||+|+||+||+|+. .+|+.||||++..... ..+++.+|+++|++++||||+++++++...
T Consensus 9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~ 88 (318)
T d3blha1 9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 88 (318)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence 36799999999999999999995 6899999999865433 256799999999999999999999987542
Q ss_pred CCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEe
Q 004248 602 ENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRL 681 (766)
Q Consensus 602 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl 681 (766)
++..|+|||||+++++....... ..++..+++.++.|++.||+|||+. +||||||||+|||++.++.+||
T Consensus 89 ~~~~~iv~e~~~~~~~~~~~~~~-------~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl 158 (318)
T d3blha1 89 KGSIYLVFDFCEHDLAGLLSNVL-------VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKL 158 (318)
T ss_dssp --CEEEEEECCCEEHHHHHTCTT-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEE
T ss_pred CceEEEEEeccCCCccchhhhcc-------cccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEe
Confidence 23589999999987766554333 2488999999999999999999998 9999999999999999999999
Q ss_pred ccchhhhhcCC-------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 682 GSLSEVCAQGG-------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 682 ~DFG~a~~~~~-------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
+|||+++.... .....++|+.|+|||.+..... +++|+||||+||++|||+||+.||..
T Consensus 159 ~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~--------~~~k~DiwSlGvil~el~~g~~pf~~ 224 (318)
T d3blha1 159 ADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERD--------YGPPIDLWGAGCIMAEMWTRSPIMQG 224 (318)
T ss_dssp CCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSS--------CCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred eecceeeecccccccccccccceecCHHHhhHHHHcCCCC--------CCcHHHcccCCceeeeHhhCCCCCCC
Confidence 99999975531 2234578999999998754432 57899999999999999999999954
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-39 Score=348.39 Aligned_cols=197 Identities=20% Similarity=0.229 Sum_probs=160.6
Q ss_pred CCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEec-----CCcEEEE
Q 004248 535 DFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMER-----ENEKFLV 608 (766)
Q Consensus 535 ~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~~~~lV 608 (766)
+|+..++||+|+||+||+|+. .+|+.||||++...... +.+|+++|++++|||||++++++... +...|+|
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~---~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv 97 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF---KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 97 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS---CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEE
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH---HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEE
Confidence 477889999999999999995 57999999999765432 34799999999999999999987642 2247899
Q ss_pred EeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccchhh
Q 004248 609 YKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEV 687 (766)
Q Consensus 609 ~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG~a 687 (766)
||||++|.+..+.+.... ...+++.+++.++.||+.||+|||++ +||||||||+|||++.++ .+||+|||++
T Consensus 98 ~Ey~~~~~~~~l~~~~~~----~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a 170 (350)
T d1q5ka_ 98 LDYVPETVYRVARHYSRA----KQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSA 170 (350)
T ss_dssp EECCSEEHHHHHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTC
T ss_pred EeccCCccHHHHHhhhhc----cCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccch
Confidence 999987544433321111 13599999999999999999999997 999999999999999775 8999999999
Q ss_pred hhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 688 CAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 688 ~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
+... .......+|+.|+|||.+..... ++.++||||+||++|||+||+.||...
T Consensus 171 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~--------~~~~~DIwSlG~il~el~~g~~pf~~~ 226 (350)
T d1q5ka_ 171 KQLVRGEPNVSYICSRYYRAPELIFGATD--------YTSSIDVWSAGCVLAELLLGQPIFPGD 226 (350)
T ss_dssp EECCTTSCCCSCCSCTTSCCHHHHTTCSS--------CCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred hhccCCcccccccccccccChHHhhcccC--------CCcceeecccceEEEehhhCCCCCCCC
Confidence 8763 33455678999999997654332 578999999999999999999999543
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=100.00 E-value=7e-39 Score=342.81 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=167.6
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-CCCcccceeEEEec-CCcEEEEEe
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-HARLVPLLGHCMER-ENEKFLVYK 610 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~-~~~~~lV~E 610 (766)
++|+..++||+|+||+||+|+. .+|+.||||+++.. ..+++.+|+++|++++ ||||+++++++... ....++|||
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~--~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e 112 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFE 112 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS--CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH--HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEe
Confidence 5799999999999999999995 67999999998643 3567999999999995 99999999977642 346899999
Q ss_pred eCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC-cEEeccchhhhh
Q 004248 611 YMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF-EVRLGSLSEVCA 689 (766)
Q Consensus 611 y~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFG~a~~ 689 (766)
||++|+|..+.+ .+++.++..++.||+.||+|||++ +||||||||+|||++.++ .+||+|||+|+.
T Consensus 113 ~~~~~~L~~~~~----------~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~ 179 (328)
T d3bqca1 113 HVNNTDFKQLYQ----------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF 179 (328)
T ss_dssp CCCSCBGGGTTT----------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEE
T ss_pred ecCCCcHHHHhc----------CCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeeccccccee
Confidence 999999977642 389999999999999999999998 999999999999998655 699999999987
Q ss_pred cC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCccc
Q 004248 690 QG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSRFG 752 (766)
Q Consensus 690 ~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~~~ 752 (766)
.. .......+|+.|+|||....... ++.++||||+||++|||++|+.||......
T Consensus 180 ~~~~~~~~~~~~t~~y~aPE~~~~~~~--------~~~~~DiwslG~~l~e~~~g~~pf~~~~~~ 236 (328)
T d3bqca1 180 YHPGQEYNVRVASRYFKGPELLVDYQM--------YDYSLDMWSLGCMLASMIFRKEPFFHGHDN 236 (328)
T ss_dssp CCTTCCCCSCCSCGGGCCHHHHTTCCC--------CCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred ccCCCcccccccCccccCcccccCCCC--------CCcccchhhhhhhhHHhccCCCCCCCCchh
Confidence 63 33455678999999998765432 578999999999999999999999655443
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-39 Score=343.37 Aligned_cols=199 Identities=18% Similarity=0.145 Sum_probs=168.3
Q ss_pred CCCCccceeecCCcceEEEEEE----cCCcEEEEEEeeccc-----cCHHHHHHHHHHHhhcCC-CCcccceeEEEecCC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL----EGGIPVVIKRIDLQS-----VKTEAYLLELDFFSKVSH-ARLVPLLGHCMEREN 603 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~----~~g~~vavK~l~~~~-----~~~~~~~~E~~~l~~l~H-~niv~l~~~~~~~~~ 603 (766)
++|+..+.||+|+||+||+|+. .+|+.||||.++... ...+++.+|+++|++++| |||+++++++.+ ..
T Consensus 24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~-~~ 102 (322)
T d1vzoa_ 24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-ET 102 (322)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE-TT
T ss_pred hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc-CC
Confidence 5699999999999999999984 258899999986432 125678899999999976 899999987665 56
Q ss_pred cEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEecc
Q 004248 604 EKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGS 683 (766)
Q Consensus 604 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D 683 (766)
..++|||||.+|+|.+++...+. ++......++.|++.||+|+|+. +||||||||+|||++.++.+||+|
T Consensus 103 ~~~~v~e~~~~~~L~~~i~~~~~-------~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~D 172 (322)
T d1vzoa_ 103 KLHLILDYINGGELFTHLSQRER-------FTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTD 172 (322)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESC
T ss_pred ceeeeeecccccHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEee
Confidence 89999999999999999986643 78889999999999999999998 999999999999999999999999
Q ss_pred chhhhhcCC----CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 684 LSEVCAQGG----DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 684 FG~a~~~~~----~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
||+|+.... ......+++.|++||.+...... ++.++||||+||++|||+||+.||....
T Consensus 173 FG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~-------~~~ksDIWSlG~iLyelltG~~PF~~~~ 236 (322)
T d1vzoa_ 173 FGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSG-------HDKAVDWWSLGVLMYELLTGASPFTVDG 236 (322)
T ss_dssp SSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC----------CTHHHHHHHHHHHHHHHHSSCTTSCTT
T ss_pred ccchhhhcccccccccccccccccchhHHhhcCCcC-------CCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence 999976532 23345789999999987654432 4789999999999999999999996543
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-38 Score=341.64 Aligned_cols=197 Identities=15% Similarity=0.216 Sum_probs=166.6
Q ss_pred hCCCCccceeecCCcceEEEEE-EcCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec----CCc
Q 004248 533 TGDFSDANLIKNGHSGDLFRGI-LEGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER----ENE 604 (766)
Q Consensus 533 ~~~~~~~~~ig~G~~g~Vy~~~-~~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~----~~~ 604 (766)
.++|+..++||+|+||+||+|+ ..+|+.||||+++..... .+++.+|+++|++++|||||++++++... +..
T Consensus 17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~ 96 (348)
T d2gfsa1 17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 96 (348)
T ss_dssp ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence 4679999999999999999999 467999999999765433 45789999999999999999999977431 223
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.++|+||+.+|+|.+++..+ .+++.++..++.||+.||+|||++ +||||||||+|||++.++.+|++||
T Consensus 97 ~~~i~~~~~gg~L~~~~~~~--------~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~df 165 (348)
T d2gfsa1 97 DVYLVTHLMGADLNNIVKCQ--------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF 165 (348)
T ss_dssp CCEEEEECCSEEHHHHHTTC--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEeecCCchhhhcccc--------cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCcccccccccccccccc
Confidence 56777888899999998542 389999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|++...........||+.|+|||......+ ++.++||||+||++|||++|+.||..
T Consensus 166 g~a~~~~~~~~~~~g~~~y~apE~~~~~~~--------~~~~~DiwSlGv~l~~ll~g~~pF~~ 221 (348)
T d2gfsa1 166 GLARHTDDEMTGYVATRWYRAPEIMLNWMH--------YNQTVDIWSVGCIMAELLTGRTLFPG 221 (348)
T ss_dssp ----CCTGGGSSSCHHHHTSCHHHHTTCSC--------CCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred chhcccCcccccccccccccCchhhcCCcc--------CCcccchhhhhHHHHHHHhCCCCCCC
Confidence 999877666667789999999997655433 47899999999999999999999954
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=1.6e-37 Score=326.32 Aligned_cols=196 Identities=13% Similarity=0.030 Sum_probs=165.2
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCC-CCcccceeEEEecCCcEEEEEee
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSH-ARLVPLLGHCMERENEKFLVYKY 611 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H-~niv~l~~~~~~~~~~~~lV~Ey 611 (766)
++|+..++||+|+||+||+|+. .+|+.||||.++... ..+++.+|+++++.++| +||+.+++++.. +...++||||
T Consensus 5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-~~~~~~vme~ 82 (293)
T d1csna_ 5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-GLHNVLVIDL 82 (293)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-TTEEEEEEEC
T ss_pred CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc-CcHHHHHHHHHHHHhcCCCCCCEEEEEeec-CCccEEEEEe
Confidence 5788999999999999999994 579999999886543 23457889999999976 899999987665 5689999999
Q ss_pred CCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC-----CCcEEeccchh
Q 004248 612 MPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD-----KFEVRLGSLSE 686 (766)
Q Consensus 612 ~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~-----~~~~kl~DFG~ 686 (766)
+ +|+|.+++..... .+++.++..++.|++.||+|||+. +||||||||+|||++. ++.+||+|||+
T Consensus 83 ~-~~~l~~~~~~~~~------~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~ 152 (293)
T d1csna_ 83 L-GPSLEDLLDLCGR------KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM 152 (293)
T ss_dssp C-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTT
T ss_pred c-CCCHHHHHHhhcc------chhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccce
Confidence 9 5899999876442 489999999999999999999998 9999999999999974 57899999999
Q ss_pred hhhcCC----------CCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCCc
Q 004248 687 VCAQGG----------DAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSSR 750 (766)
Q Consensus 687 a~~~~~----------~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~~ 750 (766)
|+.... ......||+.|+|||.+.... ++.++|||||||++|||+||+.||....
T Consensus 153 a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~---------~~~~~DiwSlG~~l~elltg~~Pf~~~~ 217 (293)
T d1csna_ 153 VKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGRE---------QSRRDDLEALGHVFMYFLRGSLPWQGLK 217 (293)
T ss_dssp CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCC---------CCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred eEEcccCccccceeecccCceEEchhhcCHHHhcCCC---------CChHHHHHHhhHHHHHHHhCCCcCCCcc
Confidence 986532 123356899999999886544 5789999999999999999999996443
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.1e-37 Score=329.10 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=163.5
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcccceeEEEecCCcEEEEEeeC
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLVPLLGHCMERENEKFLVYKYM 612 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~lV~Ey~ 612 (766)
++|+..+.||+|+||.||+|+. .+|+.||||.+..... .+++.+|++++++++|+|+|..++.|....+..++||||+
T Consensus 7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~ 85 (299)
T d1ckia_ 7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL 85 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEc
Confidence 4689999999999999999985 6799999999875433 3468899999999999988888777766677899999999
Q ss_pred CCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCC---CCcEEeccchhhhh
Q 004248 613 PNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDD---KFEVRLGSLSEVCA 689 (766)
Q Consensus 613 ~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~DFG~a~~ 689 (766)
. |++.+.+.... ..+++..+..++.|++.||+|||++ +||||||||+|||++. +..+||+|||+|+.
T Consensus 86 ~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~ 155 (299)
T d1ckia_ 86 G-PSLEDLFNFCS------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 155 (299)
T ss_dssp C-CBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred C-Cchhhhhhhcc------CCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCccee
Confidence 5 57776665433 2489999999999999999999998 9999999999998763 56799999999987
Q ss_pred cCCC----------CccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 690 QGGD----------AHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 690 ~~~~----------~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.... .....||+.|+|||...+.. ++.++|||||||++|||+||+.||...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~~l~el~tg~~P~~~~ 216 (299)
T d1ckia_ 156 YRDARTHQHIPYRENKNLTGTARYASINTHLGIE---------QSRRDDLESLGYVLMYFNLGSLPWQGL 216 (299)
T ss_dssp CBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBC---------CCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred ccccccccceeccccCCcCCCccccCHHHHhCCC---------CCChhhEEecCHHHHHHHhCCCccccc
Confidence 5321 23347899999999876544 478999999999999999999999543
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-37 Score=331.67 Aligned_cols=193 Identities=18% Similarity=0.180 Sum_probs=155.3
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccC---HHHHHHHHHHHhhcCCCCcccceeEEEec-----CCc
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVK---TEAYLLELDFFSKVSHARLVPLLGHCMER-----ENE 604 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~---~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~~ 604 (766)
++|+..++||+|+||+||+|+. .+|+.||||++...... .+++.+|++++++++|||||++++++... ...
T Consensus 17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~ 96 (355)
T d2b1pa1 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD 96 (355)
T ss_dssp TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence 6799999999999999999995 57999999999765433 45689999999999999999999987532 357
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCcEEeccc
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFEVRLGSL 684 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF 684 (766)
.|+|||||.++ +.+.+.. .+++.+++.++.||+.||+|||+. +|+||||||+|||++.++.+|++||
T Consensus 97 ~~iv~Ey~~~~-l~~~~~~---------~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df 163 (355)
T d2b1pa1 97 VYLVMELMDAN-LCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 163 (355)
T ss_dssp EEEEEECCSEE-HHHHHTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEeccchH-HHHhhhc---------CCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeech
Confidence 89999999764 4454432 389999999999999999999998 9999999999999999999999999
Q ss_pred hhhhhcC--CCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCC
Q 004248 685 SEVCAQG--GDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLS 748 (766)
Q Consensus 685 G~a~~~~--~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~ 748 (766)
|+++... .......+|+.|+|||.+.+.. +++++||||+||++|||++|+.||..
T Consensus 164 ~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~---------~~~~~DiwSlG~~l~ell~g~~pF~~ 220 (355)
T d2b1pa1 164 GLARTAGTSFMMTPYVVTRYYRAPEVILGMG---------YKENVDIWSVGCIMGEMVRHKILFPG 220 (355)
T ss_dssp CC---------------CCTTCCHHHHTTCC---------CCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred hhhhccccccccccccccccccChhhhcCCC---------CCCCcccccccchHHHHhhCCCCCCC
Confidence 9987663 2344567899999999886543 47899999999999999999999953
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4e-33 Score=302.05 Aligned_cols=201 Identities=19% Similarity=0.218 Sum_probs=161.9
Q ss_pred CCCCccceeecCCcceEEEEEE-cCCcEEEEEEeeccccCHHHHHHHHHHHhhcC-----------CCCcccceeEEEe-
Q 004248 534 GDFSDANLIKNGHSGDLFRGIL-EGGIPVVIKRIDLQSVKTEAYLLELDFFSKVS-----------HARLVPLLGHCME- 600 (766)
Q Consensus 534 ~~~~~~~~ig~G~~g~Vy~~~~-~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~-----------H~niv~l~~~~~~- 600 (766)
++|+..++||+|+||+||+|+. .+|+.||||+++......+.+.+|++++++++ |+|||++++++..
T Consensus 13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~ 92 (362)
T d1q8ya_ 13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 92 (362)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence 3488999999999999999995 68999999999866555678899999998885 5789999987653
Q ss_pred cCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCC---
Q 004248 601 RENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKF--- 677 (766)
Q Consensus 601 ~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~--- 677 (766)
.....+++|+++..+.......... ....+++..+..++.||+.||+|||+. .+|+||||||+|||++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~~~ 166 (362)
T d1q8ya_ 93 GPNGVHVVMVFEVLGENLLALIKKY----EHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPE 166 (362)
T ss_dssp ETTEEEEEEEECCCCEEHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTT
T ss_pred cccceeeeeeecccccccccccccc----cccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccCccc
Confidence 3356778888877665443332211 113588999999999999999999973 2899999999999998665
Q ss_pred ---cEEeccchhhhhcCCCCccceeeecccCCCCCCCCceeeeeeeeecccccceecchHHHHHHhcCCCCCCCC
Q 004248 678 ---EVRLGSLSEVCAQGGDAHQSRITRLLRLPQSSEQGSSGMVIYLFIIFTIFHIYFHGNPLFSAIFNNHLNLSS 749 (766)
Q Consensus 678 ---~~kl~DFG~a~~~~~~~~~~~~t~~y~aPe~~~~~~~g~~~~~~~~~~~~Dv~s~Gvvl~elltG~~p~~~~ 749 (766)
.+|++|||.++..........+|+.|+|||...... ++.++||||+||+++||++|+.||...
T Consensus 167 ~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~---------~~~~~DiwSlG~il~el~~g~~pF~~~ 232 (362)
T d1q8ya_ 167 NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAP---------WGCGADIWSTACLIFELITGDFLFEPD 232 (362)
T ss_dssp TEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCC---------CCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred ccceeeEeecccccccccccccccccccccChhhccccC---------CCccccccchHHHHHHHHHCCCCCCCC
Confidence 399999999987766666778999999999876554 478999999999999999999999543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=2.7e-32 Score=289.28 Aligned_cols=253 Identities=29% Similarity=0.450 Sum_probs=228.3
Q ss_pred CCCCEEEccCCCCCc--cCCcccCCCCCCcEEEeec-CcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCE
Q 004248 142 PTLQALDLRSCSISG--VIPFSLGNLTNLTSLYLSD-NGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSS 218 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 218 (766)
.+++.|||++|.++| .+|..+++|++|++|+|++ |+++|.+|..|++|++|++|+|++|++.+..|..+..+.+|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 368899999999998 5899999999999999997 8999999999999999999999999999999999999999999
Q ss_pred EeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCC-CEEEccCCcCCccCCcccCCCCCCCEEEccCcc
Q 004248 219 LDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSL-VDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNF 297 (766)
Q Consensus 219 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~ 297 (766)
+++++|.+.+.+|..++++++|+.+++++|.+++.+|..++.+.++ +.+++++|++++..|..+.++..+ .+++++|.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999999999999999999999999999999999999988876 899999999999999999888655 79999999
Q ss_pred CccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC
Q 004248 298 LSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT 377 (766)
Q Consensus 298 l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~ 377 (766)
+.|.+|... ..+++|+.+++++|.+++.+| .+..+++|+.|||++|+++|.+|... ..+++|++|+|++|+++|.+|
T Consensus 209 ~~~~~~~~~-~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~l~g~iP 285 (313)
T d1ogqa_ 209 LEGDASVLF-GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEECCGGGC-CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECC
T ss_pred ccccccccc-ccccccccccccccccccccc-ccccccccccccCccCeecccCChHH-hCCCCCCEEECcCCcccccCC
Confidence 998887654 788999999999999998766 58889999999999999999999765 556889999999999999998
Q ss_pred cC--CCCCCEEeccCCc-Cccc-cC
Q 004248 378 PV--LGRFRLVDLSGNY-FEGR-VP 398 (766)
Q Consensus 378 ~~--l~~l~~ldLs~N~-l~g~-~p 398 (766)
.. +.+|+.+++++|+ ++|. +|
T Consensus 286 ~~~~L~~L~~l~l~~N~~l~g~plp 310 (313)
T d1ogqa_ 286 QGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp CSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred CcccCCCCCHHHhCCCccccCCCCC
Confidence 63 6678888899987 5654 44
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-26 Score=241.32 Aligned_cols=251 Identities=25% Similarity=0.280 Sum_probs=208.2
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEcc-CCCCCCCCCcccCCCCCCCEEe
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLS-RNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+++++|+|++|+|+...+..|.++++|++|++++|++....+..+.++..++.++.. .|.++...|..|.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 468999999999998877889999999999999999998888888889999998765 6667777788899999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
+++|.+....+..+..+++|+.+++++|++++..+..|..+++|++|++++|++++..+..|.++++|+++++++|.+++
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 99999987777788899999999999999998778889999999999999999998888999999999999999999987
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcCC
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPVL 380 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~l 380 (766)
..| ..|..+++|+.|++++|++++.+|..|.++++|++|++++|.+.+.-+... ....++.+....+.+.+..|..+
T Consensus 192 i~~-~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~--l~~~l~~~~~~~~~~~C~~p~~l 268 (284)
T d1ozna_ 192 VHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRL 268 (284)
T ss_dssp ECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH--HHHHHHHCCSEECCCBEEESGGG
T ss_pred cCh-hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchH--HHHHHHhCcCCCCceEeCCchHH
Confidence 555 456889999999999999999999999999999999999999986543211 11122334444555665566666
Q ss_pred CCCCEEeccCCcCcc
Q 004248 381 GRFRLVDLSGNYFEG 395 (766)
Q Consensus 381 ~~l~~ldLs~N~l~g 395 (766)
......+++.|.|+|
T Consensus 269 ~g~~l~~l~~~~l~g 283 (284)
T d1ozna_ 269 AGRDLKRLAANDLQG 283 (284)
T ss_dssp TTCBGGGSCGGGSCC
T ss_pred cCCccccCCHHHCCC
Confidence 555556666666654
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.91 E-value=2.2e-23 Score=225.86 Aligned_cols=282 Identities=27% Similarity=0.345 Sum_probs=159.5
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
..++.+++++.....+ +.+..|++|++|++++|.+.+ +|+ +. ++++|++|++++|.+.+..| ++++
T Consensus 44 ~~l~~L~l~~~~I~~l---------~gl~~L~nL~~L~Ls~N~l~~-l~~-l~-~L~~L~~L~L~~n~i~~i~~--l~~l 109 (384)
T d2omza2 44 DQVTTLQADRLGIKSI---------DGVEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIADITP--LANL 109 (384)
T ss_dssp TTCCEEECCSSCCCCC---------TTGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred CCCCEEECCCCCCCCc---------cccccCCCCCEEeCcCCcCCC-Ccc-cc-CCcccccccccccccccccc--cccc
Confidence 3578888887543211 257789999999999999875 554 54 49999999999999987543 8899
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCC-----------------------------------------C
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLT-----------------------------------------G 204 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-----------------------------------------~ 204 (766)
++|+.|++++|.+++..+. .....+..+....|.+. .
T Consensus 110 ~~L~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (384)
T d2omza2 110 TNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187 (384)
T ss_dssp TTCCEEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 9999999999888743221 11222222222222111 0
Q ss_pred CCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCC
Q 004248 205 NIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRG 284 (766)
Q Consensus 205 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~ 284 (766)
..+..+..+++++.+++++|.+++..| +..+++|+.|++++|.++. + ..+..+++|+.|++++|.+++..+ +..
T Consensus 188 ~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 261 (384)
T d2omza2 188 SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSG 261 (384)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccc
Confidence 112233445556666666666554332 2344556666666665543 2 234555666666666666554332 455
Q ss_pred CCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcE
Q 004248 285 LRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVE 364 (766)
Q Consensus 285 l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~ 364 (766)
+++|++|++++|.+++..+ +..+..++.++++.|++++. ..+..+++++.|++++|++++..| ...+++|+.
T Consensus 262 ~~~L~~L~l~~~~l~~~~~---~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~---l~~l~~L~~ 333 (384)
T d2omza2 262 LTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQR 333 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCE
T ss_pred cccCCEeeccCcccCCCCc---cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc---cccCCCCCE
Confidence 5566666666665553322 24445555555555555542 234455555556666555554322 233455555
Q ss_pred EEccCCcCccCC-CcCCCCCCEEeccCCcCcccc
Q 004248 365 LNISQNMFYGGL-TPVLGRFRLVDLSGNYFEGRV 397 (766)
Q Consensus 365 L~ls~N~l~g~~-~~~l~~l~~ldLs~N~l~g~~ 397 (766)
|++++|.+++-- ...+++|+.||+++|++++..
T Consensus 334 L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~ 367 (384)
T d2omza2 334 LFFANNKVSDVSSLANLTNINWLSAGHNQISDLT 367 (384)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCG
T ss_pred EECCCCCCCCChhHcCCCCCCEEECCCCcCCCCh
Confidence 666555554310 123455556666666555443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.1e-24 Score=223.42 Aligned_cols=251 Identities=19% Similarity=0.217 Sum_probs=206.2
Q ss_pred EEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc-CC
Q 004248 146 ALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS-SN 224 (766)
Q Consensus 146 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~N 224 (766)
.++.++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|++++|++....+..+.++..++.++.. .|
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 4566677776 4565553 578999999999997666789999999999999999998888889999999999875 56
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~ 304 (766)
.++...|..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|+.|++++|.+++ ++.
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~ 170 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPE 170 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECT
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cch
Confidence 6776668889999999999999999988778888899999999999999998778889999999999999999985 566
Q ss_pred CccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCCcC--CCC
Q 004248 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLTPV--LGR 382 (766)
Q Consensus 305 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~~~--l~~ 382 (766)
..|..+++|+.+++++|++++..|..|..+++|++||+++|++++..|. .+....+|++|++++|.+.+.-+.. ...
T Consensus 171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~ 249 (284)
T d1ozna_ 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (284)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred hhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc-ccccccccCEEEecCCCCCCCccchHHHHH
Confidence 6789999999999999999999999999999999999999999976554 4456677888888888877653310 112
Q ss_pred CCEEeccCCcCccccChhh
Q 004248 383 FRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 383 l~~ldLs~N~l~g~~p~~~ 401 (766)
++.+....+.+....|..+
T Consensus 250 l~~~~~~~~~~~C~~p~~l 268 (284)
T d1ozna_ 250 LQKFRGSSSEVPCSLPQRL 268 (284)
T ss_dssp HHHCCSEECCCBEEESGGG
T ss_pred HHhCcCCCCceEeCCchHH
Confidence 3344555566666666655
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.1e-23 Score=221.50 Aligned_cols=259 Identities=22% Similarity=0.295 Sum_probs=196.5
Q ss_pred CCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEE
Q 004248 117 THLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLD 196 (766)
Q Consensus 117 ~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 196 (766)
+.+++|++++|.+. .+|+..+..+++|++|++++|.+....|..|.++++|++|+|++|+++ .+|..+ ...|+.|+
T Consensus 31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~ 106 (305)
T d1xkua_ 31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELR 106 (305)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEE
T ss_pred CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhh
Confidence 46888999999875 465532334889999999999998888888999999999999999988 466543 35788899
Q ss_pred ccCCCCCCCCCcccCCCCCCCEEeccCCcCC--CCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 197 LSRNSLTGNIPTSFGLLKNLSSLDISSNYLT--GSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 197 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
++.|.+.+..+..+.....+..++...|... ...+..+..+++|+++++++|.++. +|..+ +++|++|++++|..
T Consensus 107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~ 183 (305)
T d1xkua_ 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKI 183 (305)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCC
T ss_pred ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcC
Confidence 9999988776667778888888888887543 3345567788889999999998864 55443 57889999999999
Q ss_pred CccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcc
Q 004248 275 SGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNS 354 (766)
Q Consensus 275 ~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 354 (766)
++..+..+.+++.++.|++++|.+++. +...|..+++|+.|+|++|+|+.. |..|..+++|++|+|++|+++ .++..
T Consensus 184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~-~i~~~ 260 (305)
T d1xkua_ 184 TKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNIS-AIGSN 260 (305)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred CCCChhHhhcccccccccccccccccc-ccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccC-ccChh
Confidence 888888899999999999999988754 445567888899999999988854 668888999999999999888 44432
Q ss_pred cccCCCCCcEEEccCCcCccCCCcCCCCCCEEeccCCcCc-cccChh
Q 004248 355 RSNVNTSTVELNISQNMFYGGLTPVLGRFRLVDLSGNYFE-GRVPEY 400 (766)
Q Consensus 355 ~~~~~~~l~~L~ls~N~l~g~~~~~l~~l~~ldLs~N~l~-g~~p~~ 400 (766)
.+... .......+|+.|+|++|.++ ..+|..
T Consensus 261 ~f~~~---------------~~~~~~~~L~~L~L~~N~~~~~~~~~~ 292 (305)
T d1xkua_ 261 DFCPP---------------GYNTKKASYSGVSLFSNPVQYWEIQPS 292 (305)
T ss_dssp SSSCS---------------SCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred hccCc---------------chhcccCCCCEEECCCCcCccCcCCHh
Confidence 22110 11123457888888888875 444443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=2.1e-23 Score=219.31 Aligned_cols=230 Identities=21% Similarity=0.295 Sum_probs=171.5
Q ss_pred CCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccC
Q 004248 132 SIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFG 211 (766)
Q Consensus 132 ~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~ 211 (766)
++|+.+ .++|++|+|++|+|+...+..|.++++|++|++++|.++...|..|.++++|++|++++|+++. +|..+
T Consensus 24 ~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~- 98 (305)
T d1xkua_ 24 KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM- 98 (305)
T ss_dssp SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC-
T ss_pred ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch-
Confidence 455544 2578999999999987777789999999999999999998778889999999999999999884 56543
Q ss_pred CCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCC--CCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCC
Q 004248 212 LLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLAS--SIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQ 289 (766)
Q Consensus 212 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~ 289 (766)
...|+.|++++|.+.+..+..+.....++.++...|.... ..+..+..+++|+.+++++|.++. +|..+ +++|+
T Consensus 99 -~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~ 174 (305)
T d1xkua_ 99 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLT 174 (305)
T ss_dssp -CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCS
T ss_pred -hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccC
Confidence 3578889999998886655556677778888888775532 334567778888888888888873 44433 57788
Q ss_pred EEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccC
Q 004248 290 KFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQ 369 (766)
Q Consensus 290 ~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~ 369 (766)
.|++++|..++..+. .|..++.++.|++++|.+++..+.++.++++|++|+|++|+|+ .+|... ..+++|+.|++++
T Consensus 175 ~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l-~~l~~L~~L~Ls~ 251 (305)
T d1xkua_ 175 ELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHN 251 (305)
T ss_dssp EEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT-TTCSSCCEEECCS
T ss_pred EEECCCCcCCCCChh-Hhhccccccccccccccccccccccccccccceeeeccccccc-cccccc-ccccCCCEEECCC
Confidence 888888888765543 4577788888888888888888888888888888888888887 456432 3344455555544
Q ss_pred CcCc
Q 004248 370 NMFY 373 (766)
Q Consensus 370 N~l~ 373 (766)
|+++
T Consensus 252 N~i~ 255 (305)
T d1xkua_ 252 NNIS 255 (305)
T ss_dssp SCCC
T ss_pred CccC
Confidence 4443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.90 E-value=1.1e-22 Score=220.32 Aligned_cols=279 Identities=24% Similarity=0.330 Sum_probs=215.0
Q ss_pred ccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCC
Q 004248 114 VNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLS 193 (766)
Q Consensus 114 ~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 193 (766)
..+.+|+.|+++++.+.. + +.+.. |++|++|||++|+|++..| ++++++|++|+|++|++++. + .++++++|+
T Consensus 41 ~~l~~l~~L~l~~~~I~~-l-~gl~~-L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~ 113 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKS-I-DGVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLT 113 (384)
T ss_dssp HHHTTCCEEECCSSCCCC-C-TTGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCC
T ss_pred HHhCCCCEEECCCCCCCC-c-ccccc-CCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccc-c-ccccccccc
Confidence 356788999999998753 4 34544 9999999999999997543 99999999999999999864 3 388999999
Q ss_pred EEEccCCCCCCCCCcccCCCCCCCEEeccCCcCC-----------------------------------------CCCCC
Q 004248 194 VLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLT-----------------------------------------GSIPP 232 (766)
Q Consensus 194 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----------------------------------------~~~p~ 232 (766)
.|++++|.+++..+. .....+..+....|.+. ...+.
T Consensus 114 ~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (384)
T d2omza2 114 GLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191 (384)
T ss_dssp EEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 999999998864432 23344444444333321 11233
Q ss_pred CCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCc
Q 004248 233 GLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQ 312 (766)
Q Consensus 233 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~ 312 (766)
.+..+++++.+++++|.+++..| +...++|++|++++|+++. + +.+..+++|+.|++++|.+++..+ +..+++
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 264 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP---LSGLTK 264 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc---cccccc
Confidence 45667899999999999997655 4567899999999999985 3 468899999999999999987544 577889
Q ss_pred ccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCCC-cCCCCCCEEeccCC
Q 004248 313 LQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGLT-PVLGRFRLVDLSGN 391 (766)
Q Consensus 313 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~~-~~l~~l~~ldLs~N 391 (766)
|+.|++++|++++..+ +..++.++.++++.|++++. + ......+++.|++++|.+++-.+ ..+++|+.|++++|
T Consensus 265 L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~-~--~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n 339 (384)
T d2omza2 265 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-S--PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339 (384)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-G--GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred CCEeeccCcccCCCCc--cccccccccccccccccccc-c--ccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCC
Confidence 9999999999987654 77899999999999999863 3 24566889999999999987543 56899999999999
Q ss_pred cCccccChhhhhccc-----CCCcccCCCC
Q 004248 392 YFEGRVPEYVHSNAS-----SLDSNCLQNV 416 (766)
Q Consensus 392 ~l~g~~p~~~~~~~~-----~l~~n~l~~~ 416 (766)
++++ +| .+. ++. ++++|.+++.
T Consensus 340 ~l~~-l~-~l~-~l~~L~~L~l~~N~l~~l 366 (384)
T d2omza2 340 KVSD-VS-SLA-NLTNINWLSAGHNQISDL 366 (384)
T ss_dssp CCCC-CG-GGG-GCTTCCEEECCSSCCCBC
T ss_pred CCCC-Ch-hHc-CCCCCCEEECCCCcCCCC
Confidence 9986 44 232 222 4556666554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.1e-22 Score=209.57 Aligned_cols=176 Identities=30% Similarity=0.321 Sum_probs=72.6
Q ss_pred CcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccC
Q 004248 168 LTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSN 247 (766)
Q Consensus 168 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 247 (766)
|++|+|++|+|++..+..|.++++|++|+|++|+++. +| .++.+++|+.|+|++|++++ .|..+..+++|++|++++
T Consensus 33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~ 109 (266)
T d1p9ag_ 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF 109 (266)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCS
T ss_pred CCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-cccccccccccccccccc
Confidence 3444444444433222334444444444444444431 22 12334444444444444432 233344444444444444
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCC
Q 004248 248 NSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPP 327 (766)
Q Consensus 248 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~ 327 (766)
|.+....+..+..+.++++|++++|.++...+..+..+++|+.+++++|++++ ++...|..+++|+.|+|++|+|+ .+
T Consensus 110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~L~-~l 187 (266)
T d1p9ag_ 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TI 187 (266)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred cccceeeccccccccccccccccccccceeccccccccccchhcccccccccc-cCccccccccccceeecccCCCc-cc
Confidence 44443333334444444444444444443333333333444444444443332 22222334444444444444444 33
Q ss_pred CcccCCCCCCCEEEccCCCCC
Q 004248 328 PDVLWSMPQLRLLDISRNNFT 348 (766)
Q Consensus 328 p~~l~~l~~L~~L~Ls~N~l~ 348 (766)
|+.+..+++|+.|+|++|.+.
T Consensus 188 p~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 188 PKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCCCSEEECCSCCBC
T ss_pred ChhHCCCCCCCEEEecCCCCC
Confidence 333444555555555555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.7e-22 Score=207.96 Aligned_cols=197 Identities=29% Similarity=0.305 Sum_probs=155.8
Q ss_pred CEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccC
Q 004248 120 ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199 (766)
Q Consensus 120 ~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 199 (766)
...+.+++.++ .||+.+. ++|++|||++|.|++..+..|.++++|++|+|++|+|+ .+| .++.+++|++|+|++
T Consensus 13 ~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 13 LEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCS
T ss_pred eEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccc
Confidence 33455555554 4665442 46888888888888777778888888888888888887 344 357788888888888
Q ss_pred CCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCC
Q 004248 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279 (766)
Q Consensus 200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 279 (766)
|++++ .|..+.++++|+.|++++|.+....+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..+
T Consensus 87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~ 165 (266)
T d1p9ag_ 87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (266)
T ss_dssp SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred ccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence 88874 56778888888888888888887777778888888888888888887777777788888888888888888777
Q ss_pred cccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCC
Q 004248 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTG 325 (766)
Q Consensus 280 ~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~ 325 (766)
..|..+++|++|+|++|+|+ .+|..+| .+++|+.|+|++|.+..
T Consensus 166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 166 GLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred cccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCCCCC
Confidence 88888888888888888888 6777764 57788888998887753
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=8e-24 Score=206.77 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=104.2
Q ss_pred ccceeecCCcceEEEEEEcCCcEEEEEEeecccc--------------C-----HHHHHHHHHHHhhcCCCCcccceeEE
Q 004248 538 DANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSV--------------K-----TEAYLLELDFFSKVSHARLVPLLGHC 598 (766)
Q Consensus 538 ~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~--------------~-----~~~~~~E~~~l~~l~H~niv~l~~~~ 598 (766)
..++||+|+||.||+|+..+|+.||||.++.... . ...+.+|...+.++.|++++..+++.
T Consensus 4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~ 83 (191)
T d1zara2 4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE 83 (191)
T ss_dssp EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence 4689999999999999988999999998753211 0 12456789999999999999877532
Q ss_pred EecCCcEEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCCCCCeEecCCCCCCeeeCCCCc
Q 004248 599 MERENEKFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHECTLPFVHRDVQASSILLDDKFE 678 (766)
Q Consensus 599 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iiHrDlKp~NILl~~~~~ 678 (766)
..++||||++++.+.+ +++.....++.|+++|++|||+. +|+||||||+|||++++ .
T Consensus 84 -----~~~lvme~~~~~~~~~--------------l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~ 140 (191)
T d1zara2 84 -----GNAVLMELIDAKELYR--------------VRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-G 140 (191)
T ss_dssp -----TTEEEEECCCCEEGGG--------------CCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-E
T ss_pred -----CCEEEEEeeccccccc--------------hhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-C
Confidence 2379999999755432 23334567899999999999998 99999999999999965 5
Q ss_pred EEeccchhhhhcC
Q 004248 679 VRLGSLSEVCAQG 691 (766)
Q Consensus 679 ~kl~DFG~a~~~~ 691 (766)
++|+|||.|+..+
T Consensus 141 ~~liDFG~a~~~~ 153 (191)
T d1zara2 141 IWIIDFPQSVEVG 153 (191)
T ss_dssp EEECCCTTCEETT
T ss_pred EEEEECCCcccCC
Confidence 8999999987653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.2e-19 Score=179.42 Aligned_cols=200 Identities=19% Similarity=0.158 Sum_probs=137.0
Q ss_pred CCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCC-CccccCCCCCCEEEcc-CCCCCCCCCcccCCCCCCCEE
Q 004248 142 PTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTI-PSSLGQLSVLSVLDLS-RNSLTGNIPTSFGLLKNLSSL 219 (766)
Q Consensus 142 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~L~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L 219 (766)
+++++|||++|.|+...+..|.++++|++|+|++|.+...+ +..|.+++++++|++. .|++....+..|.++++|+.|
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 47889999999998766778899999999999999887654 4467889999998876 467777777888899999999
Q ss_pred eccCCcCCCCCC-CCCCCCCCccEEEccCCCCCCCCccccCCCC-CCCEEEccCCcCCccCCcccCCCCCCCEE-EccCc
Q 004248 220 DISSNYLTGSIP-PGLGTLSKLQYLNVSNNSLASSIPAQLGDLD-SLVDLDLSMNSLSGSVPSELRGLRSLQKF-VIGNN 296 (766)
Q Consensus 220 ~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L-~ls~N 296 (766)
++++|.+....+ ..+..+..+..+..+++.+....+..+..++ .++.|++++|+++...+..+ ...+++.+ ++++|
T Consensus 109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n 187 (242)
T d1xwdc1 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNN 187 (242)
T ss_dssp EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCT
T ss_pred ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhcccccccc
Confidence 999998874322 2344556666667777777655555555553 67778888887774433333 33444333 34555
Q ss_pred cCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEcc
Q 004248 297 FLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343 (766)
Q Consensus 297 ~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 343 (766)
+++ .+|...|..+++|+.|+|++|+++..++..|.++++|+.|++.
T Consensus 188 ~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 188 NLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp TCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred ccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 555 4555556666666666666666665555555555555555543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.78 E-value=4.4e-17 Score=173.00 Aligned_cols=269 Identities=23% Similarity=0.270 Sum_probs=158.9
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCC
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLT 166 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 166 (766)
+.+.+||++...+ .++. .+++|++|++++|.+. .+|.. +.+|+.|++++|+++. ++. + .+
T Consensus 39 ~l~~LdLs~~~L~---~lp~--------~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~-l--p~ 98 (353)
T d1jl5a_ 39 QAHELELNNLGLS---SLPE--------LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSD-L--PP 98 (353)
T ss_dssp TCSEEECTTSCCS---CCCS--------CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCS-C--CT
T ss_pred CCCEEEeCCCCCC---CCCC--------CCCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hhh-h--cc
Confidence 4556777765432 2211 1356777777777765 56643 4567777777777663 221 1 13
Q ss_pred CCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEcc
Q 004248 167 NLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246 (766)
Q Consensus 167 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 246 (766)
.|++|+|++|.++ .+|. ++.+++|++|++++|.+.. .|.. ...+..+++..+... .+..+..++.++.|+++
T Consensus 99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD 170 (353)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred ccccccccccccc-cccc-hhhhccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceecccc
Confidence 5777777777776 4553 5667777777777777653 2322 345566666655543 33456777888888888
Q ss_pred CCCCCCCC------------------ccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccC
Q 004248 247 NNSLASSI------------------PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFP 308 (766)
Q Consensus 247 ~N~l~~~~------------------p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~ 308 (766)
+|.+.... ...+..++.|+.+++++|.... +|. ...++..+.+..|.+.... .
T Consensus 171 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~-----~ 241 (353)
T d1jl5a_ 171 NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP-----E 241 (353)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC-----C
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccc---ccccccccccccccccccc-----c
Confidence 87765321 1123445666666666665542 222 2334555555555554211 1
Q ss_pred CCCcccEEEccCCCCCC----------------CCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcC
Q 004248 309 TVSQLQIIVLRQNGFTG----------------PPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF 372 (766)
Q Consensus 309 ~l~~L~~L~L~~N~l~~----------------~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l 372 (766)
....+...++..|.+.+ .++.....+++|++|+|++|+++ .+|.. ..+|+.|++++|++
T Consensus 242 ~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~L 316 (353)
T d1jl5a_ 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL----PPRLERLIASFNHL 316 (353)
T ss_dssp CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCC
T ss_pred ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc----cCCCCEEECCCCcC
Confidence 11223333333332221 11122234578999999999988 56642 46788899999988
Q ss_pred ccCCCcCCCCCCEEeccCCcCccccCh
Q 004248 373 YGGLTPVLGRFRLVDLSGNYFEGRVPE 399 (766)
Q Consensus 373 ~g~~~~~l~~l~~ldLs~N~l~g~~p~ 399 (766)
+ .+|..+.+|+.|+|++|+++ .+|+
T Consensus 317 ~-~l~~~~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 317 A-EVPELPQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp S-CCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred C-ccccccCCCCEEECcCCcCC-CCCc
Confidence 7 67777788999999999987 5554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=1.6e-18 Score=173.48 Aligned_cols=204 Identities=24% Similarity=0.352 Sum_probs=131.4
Q ss_pred CEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccC
Q 004248 120 ASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSR 199 (766)
Q Consensus 120 ~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 199 (766)
..++++.+.+++.++. . .+.+|+.|++++|.++.. + .+.++++|++|+|++|++++..| +.++++|++|++++
T Consensus 22 ~~~~l~~~~~~d~~~~--~-~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 22 IKIAAGKSNVTDTVTQ--A-DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (227)
T ss_dssp HHHHTTCSSTTSEECH--H-HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHhCCCCcCCcCCH--H-HcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence 3345555555554432 2 266778888888877753 3 47778888888888887775432 77777888888887
Q ss_pred CCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCC
Q 004248 200 NSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVP 279 (766)
Q Consensus 200 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p 279 (766)
|.++. ++ .+.++++|+.+++++|...+. ..+...+.++.+.++++.+.... .+.+.++|++|++++|.+++..
T Consensus 95 n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~- 167 (227)
T d1h6ua2 95 NPLKN-VS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT- 167 (227)
T ss_dssp CCCSC-CG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG-
T ss_pred ccccc-cc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch-
Confidence 77763 33 466777788888777776643 23555667777777777765432 3556677777777777765432
Q ss_pred cccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEcc
Q 004248 280 SELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDIS 343 (766)
Q Consensus 280 ~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 343 (766)
.++++++|+.|++++|++++ ++. +..+++|+.|+|++|+++...| +.++++|+.|+++
T Consensus 168 -~l~~l~~L~~L~Ls~n~l~~-l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 168 -PLANLSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (227)
T ss_dssp -GGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred -hhcccccceecccCCCccCC-Chh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence 36667777777777776654 222 3556666666666666665433 5666666666665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.5e-18 Score=171.04 Aligned_cols=207 Identities=19% Similarity=0.219 Sum_probs=160.6
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCC-CcccCCCCCCCEEeccC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNI-PTSFGLLKNLSSLDISS 223 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~ 223 (766)
++++.+++.++ .+|..+- +++++|+|++|+++...+..|.++++|++|++++|.+...+ +..|.++++++.|++..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 57788888887 5666553 58999999999998655667899999999999999987655 44688999999998864
Q ss_pred -CcCCCCCCCCCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCCEEEccCCcCCccCCcccCCCC-CCCEEEccCccCcc
Q 004248 224 -NYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPA-QLGDLDSLVDLDLSMNSLSGSVPSELRGLR-SLQKFVIGNNFLSG 300 (766)
Q Consensus 224 -N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~-~L~~L~ls~N~l~g 300 (766)
|.+....+..|.++++|++|++++|.+....+. .+..++.|..+..+++++....+..+.+++ .++.|++++|+++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~- 166 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 166 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-
Confidence 677777778889999999999999999754332 344566677777788888766667777664 7888999999998
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccc
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRS 356 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 356 (766)
.++...|.....++.+++++|+++..++..|.++++|++|||++|+++ .+|...+
T Consensus 167 ~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~ 221 (242)
T d1xwdc1 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 221 (242)
T ss_dssp EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSC
T ss_pred ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHH
Confidence 456566555444455567888898877788899999999999999998 5665433
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=1.1e-18 Score=169.84 Aligned_cols=172 Identities=21% Similarity=0.293 Sum_probs=110.3
Q ss_pred EEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCc
Q 004248 218 SLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSI-PAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNN 296 (766)
Q Consensus 218 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N 296 (766)
.++.++|+++ .+|..+. +++++|+|++|+|++.+ +..|.++++|++|+|++|++.+..+..+..+++|++|++++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4455555554 3444432 35555666666655422 334555666666666666666666666666666666666666
Q ss_pred cCccccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcCccCC
Q 004248 297 FLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMFYGGL 376 (766)
Q Consensus 297 ~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l~g~~ 376 (766)
+++ .++...|.++++|+.|+|++|+|++.+|++|..+++|++|+|++|.+....+.... ...+..+.+..|.+.+..
T Consensus 89 ~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 89 KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCS
T ss_pred ccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCC
Confidence 665 34455567777777777777777777777888888888888888888754432221 122344566777788778
Q ss_pred CcCCCCCCEEeccCCcCcc
Q 004248 377 TPVLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 377 ~~~l~~l~~ldLs~N~l~g 395 (766)
|..+..++.+||+.|.|.-
T Consensus 166 p~~l~~~~l~~L~~n~l~C 184 (192)
T d1w8aa_ 166 PSKVRDVQIKDLPHSEFKC 184 (192)
T ss_dssp STTTTTSBGGGSCTTTCCC
T ss_pred ChhhcCCEeeecCHhhCcC
Confidence 8888888888888888864
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.74 E-value=1.1e-18 Score=170.02 Aligned_cols=172 Identities=23% Similarity=0.304 Sum_probs=90.1
Q ss_pred EEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCC-CcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCC
Q 004248 170 SLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNI-PTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248 (766)
Q Consensus 170 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 248 (766)
.++.++|+++ .+|..+. +++++|+|++|+|++.+ +..|.++++|+.|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 3444444444 3444332 34555555555554422 334455555555555555555555555555555555555555
Q ss_pred CCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCCCC
Q 004248 249 SLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGPPP 328 (766)
Q Consensus 249 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~~p 328 (766)
+++...|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+........+ ...++.+.+..|.++...|
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSS
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCC
Confidence 55555555555566666666666666555555555666666666666655433222211 1224444555566655555
Q ss_pred cccCCCCCCCEEEccCCCCCC
Q 004248 329 DVLWSMPQLRLLDISRNNFTG 349 (766)
Q Consensus 329 ~~l~~l~~L~~L~Ls~N~l~g 349 (766)
.. +..++.+||+.|.|+-
T Consensus 167 ~~---l~~~~l~~L~~n~l~C 184 (192)
T d1w8aa_ 167 SK---VRDVQIKDLPHSEFKC 184 (192)
T ss_dssp TT---TTTSBGGGSCTTTCCC
T ss_pred hh---hcCCEeeecCHhhCcC
Confidence 43 3445556667666653
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=7.3e-18 Score=168.55 Aligned_cols=208 Identities=21% Similarity=0.336 Sum_probs=161.2
Q ss_pred CCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEe
Q 004248 141 LPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLD 220 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 220 (766)
+.++..++++.+.+++.+ .+..+.+|++|++.+|+++. ++ .+..+++|++|++++|++++..| +..+++|+.|+
T Consensus 18 l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~ 91 (227)
T d1h6ua2 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE 91 (227)
T ss_dssp HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred HHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccc
Confidence 444555678888888765 45778899999999999984 54 58899999999999999986544 88999999999
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCcc
Q 004248 221 ISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSG 300 (766)
Q Consensus 221 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g 300 (766)
+++|.++ .++ .+..+++|+++++++|...+.. .+...+.++.+.++++.+.... .+.+.++|+.|++++|.+++
T Consensus 92 ~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~ 165 (227)
T d1h6ua2 92 LSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD 165 (227)
T ss_dssp CCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred ccccccc-ccc-cccccccccccccccccccccc--hhccccchhhhhchhhhhchhh--hhcccccccccccccccccc
Confidence 9999887 343 5788999999999999887543 3667788999999999887543 36778889999999998875
Q ss_pred ccCCCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEcc
Q 004248 301 NLSVNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNIS 368 (766)
Q Consensus 301 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls 368 (766)
..+ +..+++|+.|+|++|++++.. .+.++++|++|+|++|++++ +|. ...+.+|+.|+++
T Consensus 166 ~~~---l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 166 LTP---LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLT 225 (227)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEE
T ss_pred chh---hcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCC-Ccc--cccCCCCCEEEee
Confidence 332 467888888899888887643 37788888888888888884 332 2344556666554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=1.6e-17 Score=164.05 Aligned_cols=161 Identities=29% Similarity=0.399 Sum_probs=89.4
Q ss_pred ecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCC
Q 004248 123 NASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSL 202 (766)
Q Consensus 123 ~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l 202 (766)
++..+.+.+.++.. .+.+|+.|++++|.++... .+..+++|++|+|++|++++ ++ .++++++|++|++++|++
T Consensus 30 ~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i 102 (210)
T d1h6ta2 30 NLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV 102 (210)
T ss_dssp HTTCSCTTSEECHH---HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred HhCcCccCCccCHH---HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccc
Confidence 44555555555432 2556677777777766432 25666677777777776664 33 255666666666666666
Q ss_pred CCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCccc
Q 004248 203 TGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSEL 282 (766)
Q Consensus 203 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l 282 (766)
++ +| .+.++++|+.|++++|.+.. + ..+..+++|+.+++++|.++. +..+..+++|+++++++|++++. + .+
T Consensus 103 ~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l 174 (210)
T d1h6ta2 103 KD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PL 174 (210)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GG
T ss_pred cc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cc
Confidence 53 33 35666666666666666542 2 235555666666666666543 22344555555555555555532 1 14
Q ss_pred CCCCCCCEEEccCccC
Q 004248 283 RGLRSLQKFVIGNNFL 298 (766)
Q Consensus 283 ~~l~~L~~L~ls~N~l 298 (766)
.++++|+.|++++|++
T Consensus 175 ~~l~~L~~L~Ls~N~i 190 (210)
T d1h6ta2 175 AGLTKLQNLYLSKNHI 190 (210)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCCCCCCEEECCCCCC
Confidence 4444444444444444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.72 E-value=1.4e-15 Score=161.26 Aligned_cols=261 Identities=21% Similarity=0.221 Sum_probs=182.1
Q ss_pred CCEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCC
Q 004248 86 GSVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNL 165 (766)
Q Consensus 86 ~~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 165 (766)
.+++.++|++.+.. .++. .+.+|+.|++++|.+. .++.. .+.|++|+|++|.+.. +|. ++++
T Consensus 58 ~~L~~L~Ls~N~l~---~lp~--------~~~~L~~L~l~~n~l~-~l~~l----p~~L~~L~L~~n~l~~-lp~-~~~l 119 (353)
T d1jl5a_ 58 PHLESLVASCNSLT---ELPE--------LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LPE-LQNS 119 (353)
T ss_dssp TTCSEEECCSSCCS---SCCC--------CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CCC-CTTC
T ss_pred CCCCEEECCCCCCc---cccc--------chhhhhhhhhhhcccc-hhhhh----cccccccccccccccc-ccc-hhhh
Confidence 35788999876543 2221 2467899999999875 45431 2469999999999985 554 6889
Q ss_pred CCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCC----------------
Q 004248 166 TNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGS---------------- 229 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---------------- 229 (766)
++|++|++++|.++. .|.. ...+..+.+..+... .+..+..++.++.|++++|.+...
T Consensus 120 ~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~ 193 (353)
T d1jl5a_ 120 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 193 (353)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC
T ss_pred ccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceeccccccccccccccccccccccccccc
Confidence 999999999999874 3433 456778888777654 456678899999999998876531
Q ss_pred --CCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccc--cC--
Q 004248 230 --IPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGN--LS-- 303 (766)
Q Consensus 230 --~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~--~~-- 303 (766)
....+..++.|+.+++++|.... +|. ...++..+.+..|.+... +.. ..++...++..|.+.+. ++
T Consensus 194 ~~~~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~~---~~~l~~~~~~~~~~~~l~~l~~~ 265 (353)
T d1jl5a_ 194 LEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSELPPN 265 (353)
T ss_dssp CSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESCCCTT
T ss_pred ccccccccccccccccccccccccc-ccc---cccccccccccccccccc-ccc---cccccccccccccccccccccch
Confidence 11235678899999999998764 443 345678888888887642 221 23344444444333211 00
Q ss_pred -----------CCccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccCCCCCCCCCcccccCCCCCcEEEccCCcC
Q 004248 304 -----------VNLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISRNNFTGPLPNSRSNVNTSTVELNISQNMF 372 (766)
Q Consensus 304 -----------~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~l~~L~ls~N~l 372 (766)
..+...+++|+.|+|++|+++. +|. .+++|+.|+|++|+|+ .+|. ...+|+.|++++|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L 336 (353)
T d1jl5a_ 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPL 336 (353)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred hcccccccCccccccccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcC
Confidence 0112345789999999999985 444 3689999999999998 6774 346899999999998
Q ss_pred ccCCCcCCCCCCEEec
Q 004248 373 YGGLTPVLGRFRLVDL 388 (766)
Q Consensus 373 ~g~~~~~l~~l~~ldL 388 (766)
. .+|.....|+.|.+
T Consensus 337 ~-~lp~~~~~L~~L~~ 351 (353)
T d1jl5a_ 337 R-EFPDIPESVEDLRM 351 (353)
T ss_dssp S-SCCCCCTTCCEEEC
T ss_pred C-CCCccccccCeeEC
Confidence 7 57766667777765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=3e-17 Score=161.97 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=139.1
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
...+++.+.+++.++. ..+.+|++|++++|.++. ++ .+..+++|++|+|++|++++. + .++.+++|+.|++++|
T Consensus 27 i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n 100 (210)
T d1h6ta2 27 IKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDEN 100 (210)
T ss_dssp HHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred HHHHhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccc
Confidence 3446677777766553 356788888998888874 33 377888889999998888864 3 3678888999999888
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~ 304 (766)
++++ +| .+..+++|+.|++++|.+.. + ..+..+++|+.+++++|.+++ +..+..+++|+++++++|++++. +.
T Consensus 101 ~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~ 173 (210)
T d1h6ta2 101 KVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VP 173 (210)
T ss_dssp CCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GG
T ss_pred cccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-cc
Confidence 8874 44 47888888999988888763 3 357788888889988888874 34567788888999988888753 32
Q ss_pred CccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEEEccC
Q 004248 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLLDISR 344 (766)
Q Consensus 305 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 344 (766)
+..+++|+.|+|++|+++.. | .+.++++|++|+|++
T Consensus 174 --l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred --ccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence 57788888899998888753 3 588888899988874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=7e-17 Score=157.87 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=92.2
Q ss_pred EecCCCCCCCCCchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCC
Q 004248 122 FNASRFLLPGSIPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNS 201 (766)
Q Consensus 122 L~ls~n~l~g~ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 201 (766)
..++.+.+.+.++.. .+++|++|++++|.++.. + .+..+++|++|+|++|++++. ++ +.++++|++|++++|.
T Consensus 23 ~~l~~~~~~~~~~~~---~l~~l~~L~l~~~~i~~l-~-~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~ 95 (199)
T d2omxa2 23 TVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQ 95 (199)
T ss_dssp HHTTCSSTTSEECHH---HHTTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCccCHH---HhcCCCEEECCCCCCCCc-c-ccccCCCcCcCccccccccCc-cc-ccCCcccccccccccc
Confidence 345555555544321 256677777777776642 2 356666777777777766643 22 6666667777776666
Q ss_pred CCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcc
Q 004248 202 LTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSE 281 (766)
Q Consensus 202 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 281 (766)
+.. +| .+.++++|+.|++++|.+... ..+..+++|+.|++++|++.. +| .+..+++|++|++++|++++. + .
T Consensus 96 ~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~ 167 (199)
T d2omxa2 96 IAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-P 167 (199)
T ss_dssp CCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-G
T ss_pred ccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-c
Confidence 653 32 356666666666666665532 235556666666666666643 22 355566666666666665532 1 2
Q ss_pred cCCCCCCCEEEccCccCc
Q 004248 282 LRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 282 l~~l~~L~~L~ls~N~l~ 299 (766)
++++++|++|++++|+++
T Consensus 168 l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 168 LANLTTLERLDISSNKVS 185 (199)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred ccCCCCCCEEECCCCCCC
Confidence 444455555544444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.8e-16 Score=154.87 Aligned_cols=179 Identities=25% Similarity=0.363 Sum_probs=122.0
Q ss_pred CEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC
Q 004248 145 QALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN 224 (766)
Q Consensus 145 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 224 (766)
..++++.+.+++.++ ...+.+|++|++++|.++. + +.+..+++|++|++++|++++..| ++++++|+.|++++|
T Consensus 21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n 94 (199)
T d2omxa2 21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 94 (199)
T ss_dssp HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence 344566677766543 2456777788888877763 3 246777778888888887775432 777778888888877
Q ss_pred cCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCcCCccCCcccCCCCCCCEEEccCccCccccCC
Q 004248 225 YLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSLVDLDLSMNSLSGSVPSELRGLRSLQKFVIGNNFLSGNLSV 304 (766)
Q Consensus 225 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~ls~N~l~g~~~~ 304 (766)
.+.. ++ .+.++++|+.|++++|.+... ..+..+++|+.|++++|++.. + +.+..+++|+.|++++|++++. +
T Consensus 95 ~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~- 166 (199)
T d2omxa2 95 QIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K- 166 (199)
T ss_dssp CCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-
T ss_pred cccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-
Confidence 7763 33 367777788888877777643 246677778888888877763 2 3467777788888888777653 2
Q ss_pred CccCCCCcccEEEccCCCCCCCCCcccCCCCCCCEE
Q 004248 305 NLFPTVSQLQIIVLRQNGFTGPPPDVLWSMPQLRLL 340 (766)
Q Consensus 305 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 340 (766)
.+..+++|+.|++++|+++.. + .+..+++|+.|
T Consensus 167 -~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 167 -PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp -GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred -cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence 146777788888888877763 2 46677777765
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=2.6e-14 Score=127.80 Aligned_cols=77 Identities=31% Similarity=0.388 Sum_probs=33.5
Q ss_pred EEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCc
Q 004248 146 ALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNY 225 (766)
Q Consensus 146 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 225 (766)
+|||++|.++. +| .+..+++|++|+|++|+++ .+|+.++.+++|++|++++|+++. +| .++.+++|++|++++|+
T Consensus 2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence 44555555542 22 2444444444444444444 234444444444444444444442 22 24444444444444444
Q ss_pred CC
Q 004248 226 LT 227 (766)
Q Consensus 226 l~ 227 (766)
++
T Consensus 77 i~ 78 (124)
T d1dcea3 77 LQ 78 (124)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.7e-17 Score=178.34 Aligned_cols=304 Identities=22% Similarity=0.202 Sum_probs=182.0
Q ss_pred CEEEEEcCCCCcCCCCCCCCccchhhhccCCCCCEEecCCCCCCC----CCchhhhhCCCCCCEEEccCCCCCcc----C
Q 004248 87 SVVGINISGFRRTRLGSQNPRFAADALVNLTHLASFNASRFLLPG----SIPDWLGQQLPTLQALDLRSCSISGV----I 158 (766)
Q Consensus 87 ~v~~l~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~g----~ip~~~~~~l~~L~~L~Ls~N~l~g~----~ 158 (766)
.+..+|+++.+.+ ..--...+..+++++.|+|++|.++. .|+..+. .+++|++|||++|.|+.. +
T Consensus 3 ~l~~ld~~~~~i~------~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~-~~~~L~~LdLs~N~i~~~~~~~l 75 (460)
T d1z7xw1 3 DIQSLDIQCEELS------DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCV 75 (460)
T ss_dssp EEEEEEEESCCCC------HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHH
T ss_pred CCCEEEeeCCcCC------hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHh-cCCCCCEEECcCCcCChHHHHHH
Confidence 3677888765432 11011235667889999999998752 2334443 488999999999988631 2
Q ss_pred CcccC-CCCCCcEEEeecCcCCCC----CCccccCCCCCCEEEccCCCCCCCCC--------------------------
Q 004248 159 PFSLG-NLTNLTSLYLSDNGLTGT----IPSSLGQLSVLSVLDLSRNSLTGNIP-------------------------- 207 (766)
Q Consensus 159 p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~~p-------------------------- 207 (766)
...+. ...+|++|+|++|+++.. ++..+..+++|++|+|++|.++..-.
T Consensus 76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 155 (460)
T d1z7xw1 76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 155 (460)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccch
Confidence 22232 235799999999998743 45667888999999999998742100
Q ss_pred -------cccCCCCCCCEEeccCCcCCCC-----------CC----------------------CCCCCCCCccEEEccC
Q 004248 208 -------TSFGLLKNLSSLDISSNYLTGS-----------IP----------------------PGLGTLSKLQYLNVSN 247 (766)
Q Consensus 208 -------~~~~~l~~L~~L~Ls~N~l~~~-----------~p----------------------~~l~~l~~L~~L~Ls~ 247 (766)
..+.....++.++++.+..... .+ ..+...+.++.+++++
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~ 235 (460)
T d1z7xw1 156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235 (460)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhh
Confidence 0011234566666665443200 00 0011234566666666
Q ss_pred CCCCC-----CCccccCCCCCCCEEEccCCcCCcc----CCcccCCCCCCCEEEccCccCccccC----CCccCCCCccc
Q 004248 248 NSLAS-----SIPAQLGDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQKFVIGNNFLSGNLS----VNLFPTVSQLQ 314 (766)
Q Consensus 248 N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~g~~~----~~~~~~l~~L~ 314 (766)
|.+.. ..+........|+.|++++|.+... ....+...+.++.+++++|.++..-. .........|+
T Consensus 236 n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~ 315 (460)
T d1z7xw1 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 315 (460)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccc
Confidence 65432 1122334456778888888777543 22334556778888888887753211 11122345788
Q ss_pred EEEccCCCCCCCCCc----ccCCCCCCCEEEccCCCCCCC----CCcccccCCCCCcEEEccCCcCccC----CC---cC
Q 004248 315 IIVLRQNGFTGPPPD----VLWSMPQLRLLDISRNNFTGP----LPNSRSNVNTSTVELNISQNMFYGG----LT---PV 379 (766)
Q Consensus 315 ~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~~l~~L~ls~N~l~g~----~~---~~ 379 (766)
.+++++|.++..... .+...++|++|||++|+++.. ++.........|+.|+|++|.++.. ++ ..
T Consensus 316 ~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 395 (460)
T d1z7xw1 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 395 (460)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhc
Confidence 888888887754332 234556788888888887632 2222222345688888888887642 21 23
Q ss_pred CCCCCEEeccCCcCcccc
Q 004248 380 LGRFRLVDLSGNYFEGRV 397 (766)
Q Consensus 380 l~~l~~ldLs~N~l~g~~ 397 (766)
.++|+.|||++|+++...
T Consensus 396 ~~~L~~L~Ls~N~i~~~g 413 (460)
T d1z7xw1 396 NHSLRELDLSNNCLGDAG 413 (460)
T ss_dssp CCCCCEEECCSSSCCHHH
T ss_pred CCCCCEEECCCCcCCHHH
Confidence 477888888888887543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.3e-15 Score=137.35 Aligned_cols=128 Identities=21% Similarity=0.188 Sum_probs=63.9
Q ss_pred cCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCcc
Q 004248 162 LGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQ 241 (766)
Q Consensus 162 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 241 (766)
+.++.+|++|+|++|+++ .+|..+..+++|++|+|++|+++. ++ .|..+++|+.|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence 344455555555555555 234444455555555555555552 22 355555555555555555532222234455555
Q ss_pred EEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCccC---CcccCCCCCCCEEE
Q 004248 242 YLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSGSV---PSELRGLRSLQKFV 292 (766)
Q Consensus 242 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~---p~~l~~l~~L~~L~ 292 (766)
.|++++|+++.... ..+..+++|++|++++|.++... +..+..+++|++||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 55555555543211 23455566666666666554321 11344455555544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=4.6e-14 Score=126.15 Aligned_cols=118 Identities=33% Similarity=0.378 Sum_probs=79.3
Q ss_pred cEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCC
Q 004248 169 TSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNN 248 (766)
Q Consensus 169 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 248 (766)
|+|+|++|+++ .+| .+.++++|++|++++|+++ .+|+.|+.+++|+.|++++|.++. +| .+.++++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 46777777777 344 3677777777777777776 466677777777777777777774 44 4777777777777777
Q ss_pred CCCCCC-ccccCCCCCCCEEEccCCcCCcc---CCcccCCCCCCCEE
Q 004248 249 SLASSI-PAQLGDLDSLVDLDLSMNSLSGS---VPSELRGLRSLQKF 291 (766)
Q Consensus 249 ~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~---~p~~l~~l~~L~~L 291 (766)
+++... +..++.+++|++|++++|+++.. .......+++|+.+
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 776432 24567777777777777777642 12223445666554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3e-14 Score=133.78 Aligned_cols=112 Identities=25% Similarity=0.226 Sum_probs=76.7
Q ss_pred cccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEccCCCCCCCCccccCCCCCC
Q 004248 185 SLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVSNNSLASSIPAQLGDLDSL 264 (766)
Q Consensus 185 ~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 264 (766)
.+.+..+|++|||++|+|+. +|..+..+++|+.|+|++|+++ .++ .+..+++|++|++++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 35577778888888888874 5666677888888888888877 343 47777888888888888775544445567777
Q ss_pred CEEEccCCcCCccCC-cccCCCCCCCEEEccCccCc
Q 004248 265 VDLDLSMNSLSGSVP-SELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 265 ~~L~Ls~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~ 299 (766)
++|++++|+++.... ..+..+++|++|++++|.++
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCccc
Confidence 777777777764211 34555666666666666554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.6e-15 Score=153.20 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCCcEEEeecCcCCCC-CCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCC-cCCCC-CCCCCCCCCCccE
Q 004248 166 TNLTSLYLSDNGLTGT-IPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSN-YLTGS-IPPGLGTLSKLQY 242 (766)
Q Consensus 166 ~~L~~L~Ls~N~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~ 242 (766)
.+|++|||++|.++.. ++..+.++++|++|+|++|.++...+..++.+++|++|+|+++ .++.. +..-..++++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 3445555554444322 2223344445555555555444444444444555555555443 22210 0011123444555
Q ss_pred EEccCCC-CCCC-CccccC-CCCCCCEEEccCC--cCCcc-CCcccCCCCCCCEEEccCc-cCccccCCCccCCCCcccE
Q 004248 243 LNVSNNS-LASS-IPAQLG-DLDSLVDLDLSMN--SLSGS-VPSELRGLRSLQKFVIGNN-FLSGNLSVNLFPTVSQLQI 315 (766)
Q Consensus 243 L~Ls~N~-l~~~-~p~~l~-~l~~L~~L~Ls~N--~l~g~-~p~~l~~l~~L~~L~ls~N-~l~g~~~~~~~~~l~~L~~ 315 (766)
|+++++. ++.. ++..+. ..++|+.|+++++ .++.. +.....++++|++|++++| .+++..... +..+++|+.
T Consensus 126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~~~~L~~ 204 (284)
T d2astb2 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQH 204 (284)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCE
T ss_pred cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hcccCcCCE
Confidence 5554432 2110 111111 1234555555432 12211 1122233444555555443 233222221 133444555
Q ss_pred EEccC-CCCCCCCCcccCCCCCCCEEEccCC
Q 004248 316 IVLRQ-NGFTGPPPDVLWSMPQLRLLDISRN 345 (766)
Q Consensus 316 L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N 345 (766)
|+|++ +.++......+.++++|+.|+++++
T Consensus 205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 55544 2344333344555566666666554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-15 Score=156.53 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=135.5
Q ss_pred CcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCC-CCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEEEcc
Q 004248 168 LTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGN-IPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYLNVS 246 (766)
Q Consensus 168 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 246 (766)
+..+.++...+...+ .......+|++|||+++.++.. ++..+..+++|++|+|++|.++...+..++.+++|++|+++
T Consensus 25 ~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls 103 (284)
T d2astb2 25 VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103 (284)
T ss_dssp CSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence 344555554444222 2234556899999999988743 34557889999999999999887777788899999999999
Q ss_pred CC-CCCCC-CccccCCCCCCCEEEccCC-cCCcc-CCcccC-CCCCCCEEEccCc--cCccccCCCccCCCCcccEEEcc
Q 004248 247 NN-SLASS-IPAQLGDLDSLVDLDLSMN-SLSGS-VPSELR-GLRSLQKFVIGNN--FLSGNLSVNLFPTVSQLQIIVLR 319 (766)
Q Consensus 247 ~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~g~-~p~~l~-~l~~L~~L~ls~N--~l~g~~~~~~~~~l~~L~~L~L~ 319 (766)
++ .++.. +..-..++++|++|+++++ .++.. +...+. ..++|+.|++++. .++..--..++..+++|+.|+++
T Consensus 104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~ 183 (284)
T d2astb2 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183 (284)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence 95 45421 1222346899999999986 44422 222233 3478999999864 34322112233457889999998
Q ss_pred CC-CCCCCCCcccCCCCCCCEEEccCC-CCCCCCCcccccCCCCCcEEEccCC
Q 004248 320 QN-GFTGPPPDVLWSMPQLRLLDISRN-NFTGPLPNSRSNVNTSTVELNISQN 370 (766)
Q Consensus 320 ~N-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~~p~~~~~~~~~l~~L~ls~N 370 (766)
+| .+++.....+..+++|++|+|+++ .+++.-... ....++|+.|+++++
T Consensus 184 ~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred cccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence 85 577777778888999999999984 565433322 233456667776665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.5e-15 Score=164.96 Aligned_cols=290 Identities=21% Similarity=0.170 Sum_probs=192.3
Q ss_pred hhhccCCCCCEEecCCCCCCCCCchhhhh----CCCCCCEEEccCCCCCcc----CCcccCCCCCCcEEEeecCcCCCCC
Q 004248 111 DALVNLTHLASFNASRFLLPGSIPDWLGQ----QLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGTI 182 (766)
Q Consensus 111 ~~l~~l~~L~~L~ls~n~l~g~ip~~~~~----~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 182 (766)
..+..+++|+.||+++|.+...--..+.. ...+|++|+|++|.++.. ++..+..+++|++|+|++|.++..-
T Consensus 49 ~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~ 128 (460)
T d1z7xw1 49 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 128 (460)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh
Confidence 35678999999999999874211112222 235799999999999754 4667888999999999999865210
Q ss_pred ----------------------C-----------ccccCCCCCCEEEccCCCCCCC------------------------
Q 004248 183 ----------------------P-----------SSLGQLSVLSVLDLSRNSLTGN------------------------ 205 (766)
Q Consensus 183 ----------------------p-----------~~l~~L~~L~~L~Ls~N~l~~~------------------------ 205 (766)
+ ..+.....++.++++.+.....
T Consensus 129 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 208 (460)
T d1z7xw1 129 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 208 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred hhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0112234566666665543210
Q ss_pred ---------CCcccCCCCCCCEEeccCCcCCC-----CCCCCCCCCCCccEEEccCCCCCCC----CccccCCCCCCCEE
Q 004248 206 ---------IPTSFGLLKNLSSLDISSNYLTG-----SIPPGLGTLSKLQYLNVSNNSLASS----IPAQLGDLDSLVDL 267 (766)
Q Consensus 206 ---------~p~~~~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L 267 (766)
....+...+.++.+++++|.+.. ..+........|+.|++++|.+... ....+...+.++.+
T Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l 288 (460)
T d1z7xw1 209 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 288 (460)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred cccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccc
Confidence 00112345778889998887532 1223345567899999999988643 22334567899999
Q ss_pred EccCCcCCccCCcc-----cCCCCCCCEEEccCccCccccCCC---ccCCCCcccEEEccCCCCCCC----CCcccC-CC
Q 004248 268 DLSMNSLSGSVPSE-----LRGLRSLQKFVIGNNFLSGNLSVN---LFPTVSQLQIIVLRQNGFTGP----PPDVLW-SM 334 (766)
Q Consensus 268 ~Ls~N~l~g~~p~~-----l~~l~~L~~L~ls~N~l~g~~~~~---~~~~l~~L~~L~L~~N~l~~~----~p~~l~-~l 334 (766)
++++|.++...... ......|+.+++++|.++..-... .+....+|+.|+|++|+++.. ++..+. ..
T Consensus 289 ~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~ 368 (460)
T d1z7xw1 289 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 368 (460)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhccc
Confidence 99999987432221 124568999999999886432111 123456899999999998643 333343 46
Q ss_pred CCCCEEEccCCCCCCC----CCcccccCCCCCcEEEccCCcCccC--------CCcCCCCCCEEeccCCcCccccChhh
Q 004248 335 PQLRLLDISRNNFTGP----LPNSRSNVNTSTVELNISQNMFYGG--------LTPVLGRFRLVDLSGNYFEGRVPEYV 401 (766)
Q Consensus 335 ~~L~~L~Ls~N~l~g~----~p~~~~~~~~~l~~L~ls~N~l~g~--------~~~~l~~l~~ldLs~N~l~g~~p~~~ 401 (766)
+.|++|+|++|+++.. ++. ....+++|++|++++|.++.. +......|+.|++++|.+....+..+
T Consensus 369 ~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 369 SVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CCCCEEECCCCCCChHHHHHHHH-HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 7899999999999742 221 122457899999999998642 22233479999999999987665544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.38 E-value=7e-15 Score=156.14 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=96.3
Q ss_pred hhccCCCCCEEecCCCCCCCCCchhhh---hCCCCCCEEEccCCCCCcc----------CCcccCCCCCCcEEEeecCcC
Q 004248 112 ALVNLTHLASFNASRFLLPGSIPDWLG---QQLPTLQALDLRSCSISGV----------IPFSLGNLTNLTSLYLSDNGL 178 (766)
Q Consensus 112 ~l~~l~~L~~L~ls~n~l~g~ip~~~~---~~l~~L~~L~Ls~N~l~g~----------~p~~l~~l~~L~~L~Ls~N~l 178 (766)
.+.+.+.|+.|++++|.+...-...++ ...++|+.|+++++..... +...+..+++|+.|+|++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 455666777777777665332212221 1256677777766644311 112244556677777777766
Q ss_pred CCC----CCccccCCCCCCEEEccCCCCCCCCCc-------------ccCCCCCCCEEeccCCcCCCC----CCCCCCCC
Q 004248 179 TGT----IPSSLGQLSVLSVLDLSRNSLTGNIPT-------------SFGLLKNLSSLDISSNYLTGS----IPPGLGTL 237 (766)
Q Consensus 179 ~~~----~p~~l~~L~~L~~L~Ls~N~l~~~~p~-------------~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l 237 (766)
+.. +...+...++|++|++++|.+...-.. .....+.|+.|++++|.++.. +...+...
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~ 185 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence 543 223344556677777776665311000 012345566666666655421 11223344
Q ss_pred CCccEEEccCCCCCCC-----CccccCCCCCCCEEEccCCcCCcc----CCcccCCCCCCCEEEccCccCc
Q 004248 238 SKLQYLNVSNNSLASS-----IPAQLGDLDSLVDLDLSMNSLSGS----VPSELRGLRSLQKFVIGNNFLS 299 (766)
Q Consensus 238 ~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~ 299 (766)
++|+.|+|++|.++.. +...+..+++|+.|+|++|.++.. +...+..+++|++|++++|.++
T Consensus 186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~ 256 (344)
T d2ca6a1 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 256 (344)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence 5566666666665421 122344555666666666665422 2334455556666666666554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.37 E-value=1.1e-14 Score=154.71 Aligned_cols=237 Identities=17% Similarity=0.142 Sum_probs=126.9
Q ss_pred CchhhhhCCCCCCEEEccCCCCCcc----CCcccCCCCCCcEEEeecCcCCCC----------CCccccCCCCCCEEEcc
Q 004248 133 IPDWLGQQLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGT----------IPSSLGQLSVLSVLDLS 198 (766)
Q Consensus 133 ip~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~~~----------~p~~l~~L~~L~~L~Ls 198 (766)
+...+.. ...|+.|+|++|.+... +...+...++|+.|+++++..... +...+...++|+.|+|+
T Consensus 23 l~~~L~~-~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 23 VFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhh-CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 3344544 78889999999887532 334566778888888887765421 11234556777777777
Q ss_pred CCCCCCC----CCcccCCCCCCCEEeccCCcCCCCCCCC-------------CCCCCCccEEEccCCCCCCC----Cccc
Q 004248 199 RNSLTGN----IPTSFGLLKNLSSLDISSNYLTGSIPPG-------------LGTLSKLQYLNVSNNSLASS----IPAQ 257 (766)
Q Consensus 199 ~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-------------l~~l~~L~~L~Ls~N~l~~~----~p~~ 257 (766)
+|.++.. +...+..+++|++|++++|.+...-... ....+.|+.|++++|+++.. +...
T Consensus 102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 181 (344)
T d2ca6a1 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181 (344)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence 7777643 2223345667777777777653110000 01234455555555554321 1112
Q ss_pred cCCCCCCCEEEccCCcCCcc-----CCcccCCCCCCCEEEccCccCccccCCCccCCCCcccEEEccCCCCCCC----CC
Q 004248 258 LGDLDSLVDLDLSMNSLSGS-----VPSELRGLRSLQKFVIGNNFLSGNLSVNLFPTVSQLQIIVLRQNGFTGP----PP 328 (766)
Q Consensus 258 l~~l~~L~~L~Ls~N~l~g~-----~p~~l~~l~~L~~L~ls~N~l~g~~~~~~~~~l~~L~~L~L~~N~l~~~----~p 328 (766)
+...+.|++|+|++|+++.. +...+. ..++|+.|+|++|.++.. +.
T Consensus 182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~-------------------------~~~~L~~L~Ls~N~i~~~g~~~L~ 236 (344)
T d2ca6a1 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-------------------------YCQELKVLDLQDNTFTHLGSSALA 236 (344)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-------------------------GCTTCCEEECCSSCCHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccchhhhhc-------------------------chhhhccccccccccccccccccc
Confidence 23344555555555554321 112233 344455555555554321 22
Q ss_pred cccCCCCCCCEEEccCCCCCCCCCccc-----ccCCCCCcEEEccCCcCccC----CC----cCCCCCCEEeccCCcCcc
Q 004248 329 DVLWSMPQLRLLDISRNNFTGPLPNSR-----SNVNTSTVELNISQNMFYGG----LT----PVLGRFRLVDLSGNYFEG 395 (766)
Q Consensus 329 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~-----~~~~~~l~~L~ls~N~l~g~----~~----~~l~~l~~ldLs~N~l~g 395 (766)
..+..+++|++|+|++|.+++.-.... ......++.|++++|.+... +. ...++|+.|||++|+|..
T Consensus 237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 344556666666666666653210000 01234566777777766431 11 135678999999999864
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.25 E-value=1.4e-14 Score=140.96 Aligned_cols=112 Identities=32% Similarity=0.386 Sum_probs=53.5
Q ss_pred cccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCC
Q 004248 160 FSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSK 239 (766)
Q Consensus 160 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 239 (766)
.++..+++|++|+|++|+++. ++ .+.++++|++|+|++|+++ .+|..+..+++|+.|++++|+++. ++ .+..+++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~ 116 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHH
T ss_pred hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-ccccccc
Confidence 334444555555555555442 22 2444555555555555554 233333334445555555555542 21 2444555
Q ss_pred ccEEEccCCCCCCCCc-cccCCCCCCCEEEccCCcCCc
Q 004248 240 LQYLNVSNNSLASSIP-AQLGDLDSLVDLDLSMNSLSG 276 (766)
Q Consensus 240 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g 276 (766)
|++|++++|+++.... ..+..+++|+.|+|++|.+..
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred ccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 5555555555543211 235555566666666655543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.2e-12 Score=116.43 Aligned_cols=106 Identities=26% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCEEEccCCCCCccCCcccCCCCCCcEEEeecCc-CCCCCCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEecc
Q 004248 144 LQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNG-LTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDIS 222 (766)
Q Consensus 144 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 222 (766)
.+.++.+++++.. +|..+..+++|++|+|++|+ ++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|+
T Consensus 10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 3456666666552 45556666677777775543 554445566667777777777777766556667777777777777
Q ss_pred CCcCCCCCCCCCCCCCCccEEEccCCCCC
Q 004248 223 SNYLTGSIPPGLGTLSKLQYLNVSNNSLA 251 (766)
Q Consensus 223 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 251 (766)
+|+++ .+|.......+|+.|+|++|.+.
T Consensus 89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 89 FNALE-SLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCCCc-ccChhhhccccccccccCCCccc
Confidence 77776 34444333445667777777664
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=8e-12 Score=116.10 Aligned_cols=108 Identities=24% Similarity=0.129 Sum_probs=63.4
Q ss_pred CCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCC-CCCCCCCcccCCCCCCCEEeccCCcCCCCCCCCCCCCCCccEE
Q 004248 165 LTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRN-SLTGNIPTSFGLLKNLSSLDISSNYLTGSIPPGLGTLSKLQYL 243 (766)
Q Consensus 165 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 243 (766)
+...+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+++...|..|..+++|++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 344555666666665 45666666666666666544 3555444556666666666666666665555556666666666
Q ss_pred EccCCCCCCCCccccCCCCCCCEEEccCCcC
Q 004248 244 NVSNNSLASSIPAQLGDLDSLVDLDLSMNSL 274 (766)
Q Consensus 244 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 274 (766)
+|++|+|+...+..+. ..+|+.|+|++|.+
T Consensus 86 ~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 86 NLSFNALESLSWKTVQ-GLSLQELVLSGNPL 115 (156)
T ss_dssp ECCSSCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred eccCCCCcccChhhhc-cccccccccCCCcc
Confidence 6666666533333332 23466666666655
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=3.2e-14 Score=138.32 Aligned_cols=113 Identities=28% Similarity=0.301 Sum_probs=79.4
Q ss_pred CchhhhhCCCCCCEEEccCCCCCccCCcccCCCCCCcEEEeecCcCCCCCCccccCCCCCCEEEccCCCCCCCCCcccCC
Q 004248 133 IPDWLGQQLPTLQALDLRSCSISGVIPFSLGNLTNLTSLYLSDNGLTGTIPSSLGQLSVLSVLDLSRNSLTGNIPTSFGL 212 (766)
Q Consensus 133 ip~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~ 212 (766)
+|..+.. +++|++|+|++|.|+. ++ .+.++++|++|+|++|.++ .+|..+..+++|++|++++|+++. + +.+..
T Consensus 40 l~~sl~~-L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 40 MDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CHHHHHH-TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhHHhc-ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccc
Confidence 4455554 7778888888887774 33 4777788888888888776 456555555678888888888774 3 34667
Q ss_pred CCCCCEEeccCCcCCCCCC--CCCCCCCCccEEEccCCCCCC
Q 004248 213 LKNLSSLDISSNYLTGSIP--PGLGTLSKLQYLNVSNNSLAS 252 (766)
Q Consensus 213 l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~ 252 (766)
+++|+.|+|++|+++. ++ ..+..+++|++|+|++|.+..
T Consensus 114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccccccccchhcc-ccccccccCCCccceeecCCCcccc
Confidence 7788888888888763 33 356778888888888887654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=7.7e-09 Score=96.10 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=6.7
Q ss_pred CCCCCEEEccCCCCC
Q 004248 189 LSVLSVLDLSRNSLT 203 (766)
Q Consensus 189 L~~L~~L~Ls~N~l~ 203 (766)
+++|++|+|++|+++
T Consensus 64 ~~~L~~L~Ls~N~i~ 78 (162)
T d1koha1 64 IPELLSLNLSNNRLY 78 (162)
T ss_dssp CTTCCCCCCCSSCCC
T ss_pred CCCCCEeeCCCcccc
Confidence 444444444444444
|
| >d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Type IIIa 3',5"-aminoglycoside phosphotransferase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.22 E-value=1.9e-06 Score=85.82 Aligned_cols=148 Identities=15% Similarity=0.040 Sum_probs=96.5
Q ss_pred HHHHHHhCCCCccceeecCCcceEEEEEEcCCcEEEEEEeeccccC-HHHHHHHHHHHhhcC-CCCcccceeEEEecCCc
Q 004248 527 QQLLAATGDFSDANLIKNGHSGDLFRGILEGGIPVVIKRIDLQSVK-TEAYLLELDFFSKVS-HARLVPLLGHCMERENE 604 (766)
Q Consensus 527 ~~l~~~~~~~~~~~~ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~-~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~ 604 (766)
.|+.+....|...+..+.++.+.||+... +++.+++|+....... ...+.+|...+..++ +--+-+++.+... ++.
T Consensus 7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~-~~~ 84 (263)
T d1j7la_ 7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-DGW 84 (263)
T ss_dssp HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-TTE
T ss_pred HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEec-CCc
Confidence 35666666777666555555678998764 4556788887644332 445788988888774 3224456655443 567
Q ss_pred EEEEEeeCCCCChhhhhhccCCCCCcCCCCCHHHHHHHHHHHHHHhhhhccCC---------------------------
Q 004248 605 KFLVYKYMPNGDLSSSLYRKTNTEDDLQSLDWITRLKIAIGAAEGLSYLHHEC--------------------------- 657 (766)
Q Consensus 605 ~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--------------------------- 657 (766)
.++|||+++|.++.+..... - +...++.++++.++.||+..
T Consensus 85 ~~lv~~~l~G~~~~~~~~~~---------~---~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (263)
T d1j7la_ 85 SNLLMSEADGVLCSEEYEDE---------Q---SPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLAD 152 (263)
T ss_dssp EEEEEECCSSEEHHHHTTTC---------S---CHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSC
T ss_pred eEEEEEeccccccccccccc---------c---cHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhh
Confidence 89999999998776543211 1 12234455555555555321
Q ss_pred -----------------------------CCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 658 -----------------------------TLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 658 -----------------------------~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
.+.++|+|+.|.||++++++.+-|.||+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T d1j7la_ 153 VDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred hhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence 1137899999999999987667799998774
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.8e-08 Score=93.52 Aligned_cols=66 Identities=29% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCCCCCcEEEeecCcCCCC--CCccccCCCCCCEEEccCCCCCCCCCcccCCCCCCCEEeccCCcCCC
Q 004248 163 GNLTNLTSLYLSDNGLTGT--IPSSLGQLSVLSVLDLSRNSLTGNIPTSFGLLKNLSSLDISSNYLTG 228 (766)
Q Consensus 163 ~~l~~L~~L~Ls~N~l~~~--~p~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 228 (766)
..+++|++|+|++|+++.. ++..+..+++|+.|+|++|.++..-+-.+....+|+.|++++|.+..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~ 129 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence 3455555555555555532 12334455555666666665553222122233345555555555543
|
| >d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]
Probab=97.85 E-value=6.7e-06 Score=81.33 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=51.6
Q ss_pred eeecCCc-ceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCC--cccceeEEEecCCcEEEEEeeCCCCCh
Q 004248 541 LIKNGHS-GDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR--LVPLLGHCMERENEKFLVYKYMPNGDL 617 (766)
Q Consensus 541 ~ig~G~~-g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~~~~~~lV~Ey~~~GsL 617 (766)
.+..|.. +.||+...+++..+++|.-.... ...+.+|.+.++.+.... +.++++++.+ ++..++||||++|.++
T Consensus 17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~-~~~~~~v~~~i~G~~~ 93 (255)
T d1nd4a_ 17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVPCAAVLDVVTE-AGRDWLLLGEVPGQDL 93 (255)
T ss_dssp ECSCTTSSCEEEEEECTTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-SSCEEEEEECCSSEET
T ss_pred EcCCcccCCeEEEEEeCCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCCCCCceeeeccc-ccceEEEEEeeecccc
Confidence 4455543 67999998888889999765433 335777888888774333 4456665443 5678999999998665
Q ss_pred h
Q 004248 618 S 618 (766)
Q Consensus 618 ~ 618 (766)
.
T Consensus 94 ~ 94 (255)
T d1nd4a_ 94 L 94 (255)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Methylthioribose kinase MtnK species: Bacillus subtilis [TaxId: 1423]
Probab=97.43 E-value=0.00027 Score=74.29 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=48.6
Q ss_pred cceeecCCcceEEEEEEc-CCcEEEEEEeecc--------ccCHHHHHHHHHHHhhcC-C-C-CcccceeEEEecCCcEE
Q 004248 539 ANLIKNGHSGDLFRGILE-GGIPVVIKRIDLQ--------SVKTEAYLLELDFFSKVS-H-A-RLVPLLGHCMERENEKF 606 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~-~g~~vavK~l~~~--------~~~~~~~~~E~~~l~~l~-H-~-niv~l~~~~~~~~~~~~ 606 (766)
.+.||.|....||+.... +++.|+||.-... ....++...|.+.|+.+. + | .+.+++. ++ ++..+
T Consensus 31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~--~d-~~~~~ 107 (392)
T d2pula1 31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFY--SD-TEMAV 107 (392)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEE--EE-TTTTE
T ss_pred EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEE--Ec-CCCCE
Confidence 457899999999999854 4678999975321 112345667888887763 3 3 3444443 33 34568
Q ss_pred EEEeeCCCCCh
Q 004248 607 LVYKYMPNGDL 617 (766)
Q Consensus 607 lV~Ey~~~GsL 617 (766)
+||||+++..+
T Consensus 108 lvmE~L~~~~~ 118 (392)
T d2pula1 108 TVMEDLSHLKI 118 (392)
T ss_dssp EEECCCTTSEE
T ss_pred EEEeccCCccc
Confidence 99999987543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.33 E-value=1.5e-05 Score=73.55 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=16.8
Q ss_pred CCCCCEEEccCC-CCCcc----CCcccCCCCCCcEEEeecCcC
Q 004248 141 LPTLQALDLRSC-SISGV----IPFSLGNLTNLTSLYLSDNGL 178 (766)
Q Consensus 141 l~~L~~L~Ls~N-~l~g~----~p~~l~~l~~L~~L~Ls~N~l 178 (766)
.++|+.|+|+++ .++.. +-..+...++|++|+|++|.+
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l 56 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 56 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccccc
Confidence 455666666543 23321 112233444455555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.30 E-value=2.2e-05 Score=72.36 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=19.3
Q ss_pred CCCCCEEEccCCCCCcc----CCcccCCCCCCcEEEeecCcCC
Q 004248 141 LPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLT 179 (766)
Q Consensus 141 l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~ 179 (766)
.++|++|+|++|.+... +...+...+.|++|+|++|.++
T Consensus 43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 45566666666666421 1122233445555555555544
|
| >d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: RdoA species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0017 Score=66.10 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=47.5
Q ss_pred ceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCCc-----cccee-EEEecCCcEEEEEeeCCCCC
Q 004248 548 GDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHARL-----VPLLG-HCMERENEKFLVYKYMPNGD 616 (766)
Q Consensus 548 g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~ni-----v~l~~-~~~~~~~~~~lV~Ey~~~Gs 616 (766)
-.||++..++|+.|++|.-+.+....+++..|...+..|....+ +..-+ .....++..+.+++|++|..
T Consensus 36 N~vy~v~~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~ 110 (325)
T d1zyla1 36 NRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQ 110 (325)
T ss_dssp SEEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEE
T ss_pred ceeEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcC
Confidence 47999999999999999987665556778899998888743222 12111 11122456789999998643
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.05 E-value=0.0002 Score=65.52 Aligned_cols=15 Identities=7% Similarity=0.003 Sum_probs=6.7
Q ss_pred CCCCCcEEEeecCcC
Q 004248 164 NLTNLTSLYLSDNGL 178 (766)
Q Consensus 164 ~l~~L~~L~Ls~N~l 178 (766)
..++|++|+|++|.+
T Consensus 44 ~n~~L~~L~Ls~n~l 58 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRS 58 (166)
T ss_dssp TCCSCCEEECTTSCC
T ss_pred cCCccCeeeccCCcc
Confidence 344444444444444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.99 E-value=0.00043 Score=63.20 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=66.9
Q ss_pred ccCCCCCEEecCCC-CCCCCCchhhh---hCCCCCCEEEccCCCCCcc----CCcccCCCCCCcEEEeecCcCCCC----
Q 004248 114 VNLTHLASFNASRF-LLPGSIPDWLG---QQLPTLQALDLRSCSISGV----IPFSLGNLTNLTSLYLSDNGLTGT---- 181 (766)
Q Consensus 114 ~~l~~L~~L~ls~n-~l~g~ip~~~~---~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 181 (766)
.+.+.|+.|+++++ .++...-..+. ...++|++|+|++|.++.. +-..+...++|+.|++++|.++..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 46678888888863 44322111121 2478899999999988643 223345567888888888877632
Q ss_pred CCccccCCCCCCEEEcc--CCCCCC----CCCcccCCCCCCCEEeccCCc
Q 004248 182 IPSSLGQLSVLSVLDLS--RNSLTG----NIPTSFGLLKNLSSLDISSNY 225 (766)
Q Consensus 182 ~p~~l~~L~~L~~L~Ls--~N~l~~----~~p~~~~~l~~L~~L~Ls~N~ 225 (766)
+-..+...++|+.++|+ .|.+.. .+...+...++|+.|+++.+.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 22445666777765553 455532 122334456667777666543
|
| >d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Choline kinase domain: Choline kinase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.51 E-value=0.014 Score=60.68 Aligned_cols=73 Identities=23% Similarity=0.216 Sum_probs=47.3
Q ss_pred cceeecCCcceEEEEEEcCC--------cEEEEEEeeccccCHHHHHHHHHHHhhcCCCCcc-cceeEEEecCCcEEEEE
Q 004248 539 ANLIKNGHSGDLFRGILEGG--------IPVVIKRIDLQSVKTEAYLLELDFFSKVSHARLV-PLLGHCMERENEKFLVY 609 (766)
Q Consensus 539 ~~~ig~G~~g~Vy~~~~~~g--------~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~niv-~l~~~~~~~~~~~~lV~ 609 (766)
++.|+.|-.-.+|+...+++ +.|.++... .........+|.++++.+.-.+++ ++++++ . + .+|+
T Consensus 47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~-~--~--g~I~ 120 (395)
T d1nw1a_ 47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPETESHLVAESVIFTLLSERHLGPKLYGIF-S--G--GRLE 120 (395)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCCHHHHHHHHHHHHHHHHTTSSSCEEEEE-T--T--EEEE
T ss_pred EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-CcchhhHHHHHHHHHHHHHhCCCCCeEEEEc-C--C--ceEE
Confidence 45687788889999986542 456665543 322334556899999988544555 455533 2 2 6899
Q ss_pred eeCCCCCh
Q 004248 610 KYMPNGDL 617 (766)
Q Consensus 610 Ey~~~GsL 617 (766)
||++|..+
T Consensus 121 efi~g~~l 128 (395)
T d1nw1a_ 121 EYIPSRPL 128 (395)
T ss_dssp CCCCEEEC
T ss_pred EEeccccC
Confidence 99987544
|
| >d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Homoserine kinase ThrB species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.31 E-value=0.033 Score=55.63 Aligned_cols=163 Identities=10% Similarity=0.048 Sum_probs=84.4
Q ss_pred ccHHHHHHHhCCCCccce-----eecCCcceEEEEEEcCCcEEEEEEeeccccCHHHHHHHHHHHhhcCCCC-----ccc
Q 004248 524 FTYQQLLAATGDFSDANL-----IKNGHSGDLFRGILEGGIPVVIKRIDLQSVKTEAYLLELDFFSKVSHAR-----LVP 593 (766)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~-----ig~G~~g~Vy~~~~~~g~~vavK~l~~~~~~~~~~~~E~~~l~~l~H~n-----iv~ 593 (766)
++-+|+.....+|...++ |..|---+.|+.+..+| .+++|+..... ..++...|+++|..+++.. .+.
T Consensus 3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g-~yVLri~~~~~-~~~~l~~~~~~l~~L~~~g~pvp~pi~ 80 (316)
T d2ppqa1 3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV-EKNDLPFFLGLMQHLAAKGLSCPLPLP 80 (316)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCC-cEEEEEcCCCC-CHHHHHHHHHHHHhhhhccccccccce
Confidence 466788888888876444 34555567899887766 48899875432 2345566777777774322 222
Q ss_pred ce-eE-EEecCCcEEEEEeeCCCCChhh--------------hhhccC--CC-CCcCCCCCH-H----------------
Q 004248 594 LL-GH-CMERENEKFLVYKYMPNGDLSS--------------SLYRKT--NT-EDDLQSLDW-I---------------- 637 (766)
Q Consensus 594 l~-~~-~~~~~~~~~lV~Ey~~~GsL~~--------------~l~~~~--~~-~~~~~~l~~-~---------------- 637 (766)
.. |. ..........++.+..+..... .++... .. ........+ .
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (316)
T d2ppqa1 81 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK 160 (316)
T ss_dssp BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred ecCCCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcch
Confidence 11 10 0111235677777777644321 011000 00 000000000 0
Q ss_pred HHHHHHHHHHHHhhhhc-cCCCCCeEecCCCCCCeeeCCCCcEEeccchhhh
Q 004248 638 TRLKIAIGAAEGLSYLH-HECTLPFVHRDVQASSILLDDKFEVRLGSLSEVC 688 (766)
Q Consensus 638 ~~~~i~~~ia~gL~yLH-~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG~a~ 688 (766)
.....+......+.-.+ .....++||+|+.+.||+++.+...-|.||+.+.
T Consensus 161 ~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~ 212 (316)
T d2ppqa1 161 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 212 (316)
T ss_dssp THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hHHHHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence 01111111111122111 1123479999999999999988777899999874
|