Citrus Sinensis ID: 004297
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 763 | 2.2.26 [Sep-21-2011] | |||||||
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.837 | 0.727 | 0.201 | 8e-19 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | yes | no | 0.855 | 0.743 | 0.214 | 3e-18 | |
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.501 | 0.383 | 0.218 | 7e-17 | |
| O43581 | 403 | Synaptotagmin-7 OS=Homo s | no | no | 0.272 | 0.516 | 0.264 | 5e-13 | |
| O35681 | 587 | Synaptotagmin-3 OS=Mus mu | no | no | 0.281 | 0.366 | 0.295 | 2e-12 | |
| Q9R0N7 | 403 | Synaptotagmin-7 OS=Mus mu | no | no | 0.305 | 0.578 | 0.258 | 2e-12 | |
| P40748 | 588 | Synaptotagmin-3 OS=Rattus | no | no | 0.284 | 0.369 | 0.294 | 2e-12 | |
| Q9BQG1 | 590 | Synaptotagmin-3 OS=Homo s | no | no | 0.276 | 0.357 | 0.297 | 4e-12 | |
| P41885 | 1106 | Rabphilin-1 OS=Caenorhabd | yes | no | 0.301 | 0.207 | 0.269 | 1e-11 | |
| Q9Y6V0 | 5065 | Protein piccolo OS=Homo s | no | no | 0.158 | 0.023 | 0.349 | 2e-11 |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 148/736 (20%), Positives = 298/736 (40%), Gaps = 97/736 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-GNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
L + + + ++L +D G+ DPYV+ K+ G ++ K NP W+++ +
Sbjct: 196 LTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLDQ 255
Query: 99 SVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELML 157
L V V D+D K DFMG L ++ + L +LED + G ++L
Sbjct: 256 K-LRVKVYDRDLTKSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGVIVL 309
Query: 158 AVWMGTQADEAFPEAWHSDAATVTGIEGLA-NIR-SKVYLSPKLW--YLRVNVIEAQDLQ 213
+ + + + W + L N+R S+ +LW + + ++E +++
Sbjct: 310 NLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEGKNVS 369
Query: 214 PTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVA 273
G E++V+ +LG Q +++ + ++ NP W E F L + V + +
Sbjct: 370 ---GGNMTEMFVQLKLGEQRYKSK-TLCKSANPQWQEQFDFHYFSDRMGILDIEVWGKDS 425
Query: 274 PNKDEVLGKCMIPLQYVDKRLDHK---PVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRI 330
+E LG C + + + + D+ P+ + L I + S + +
Sbjct: 426 KKHEERLGTCKVDISALPLKQDNCLELPLESCQGALLMLITLTP-----CTGVSISDLCV 480
Query: 331 C-LEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAY 389
C E S Y+ + + K + +G+L++ +L A L+ D G +D +
Sbjct: 481 CPFEDPSERQQISQRYA--FQNSLKDV--KDVGILQVKVLKASDLL---AADFSGKSDPF 533
Query: 390 CVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDS 449
C+ + G ++T TI + P+WN+ +T+ + D V+ + VFD GDKA
Sbjct: 534 CLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFD----EDGDKAPDF--- 586
Query: 450 RIGKVRIRLSTLETDRVYTHSYPLLVLYPNG-VKKMGEIHLAVRFTCSSLLNMMHMYSQP 508
+GKV I L ++ + PN V K ++ A + L++++ P
Sbjct: 587 -LGKVAIPLLSIRDGQ------------PNCYVLKNKDLEQAFKGLIYLELDLIY---NP 630
Query: 509 LLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRIL 568
+ + P ++ R + +I+S + R ++R+
Sbjct: 631 VKASIRTFTPREKRFVEDSRKLSKKILSRDVDR----------------------VKRLT 668
Query: 569 SGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPR 628
I ++F W++ + + + ++F++ V E LY+ + +
Sbjct: 669 LAIWNTVQFFKSCFQWESTLRSTIAFVVFLVTVWNFE-------LYMIPLALLLLFLYNF 721
Query: 629 HPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQ 688
P S DS +++EE + R ++ I +Q ++ ++A+
Sbjct: 722 LRPMKGKASSTQDSQESTDVEEEGKEEEKESEKKGIIERIYMVQDIVSTVQNILEEVASF 781
Query: 689 GERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKL---- 744
GER++++ +W P + L + I ++LY P + + LL G +F KL
Sbjct: 782 GERIKNVFNWTVPFLSLLACLILAITTVILYFIPLRYIILLWGIN-----KFTKKLRNPY 836
Query: 745 ---PSVPLNFFRRLPA 757
+ L+F R+P+
Sbjct: 837 SIDNNELLDFLSRVPS 852
|
Mus musculus (taxid: 10090) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 167/777 (21%), Positives = 317/777 (40%), Gaps = 124/777 (15%)
Query: 13 TKPHLGGGKITGDKLTSTYDLVEQMQYLY-VRVVKAKDLPPKDVTGSCDPYVEVKM-GNY 70
T H + G+ +L YL + + + ++L +D G+ DPYV+ K+ G
Sbjct: 168 TSQHFEEQSVPGEASDGLSNLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKT 227
Query: 71 KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRV 130
++ K NP W+++ + L V V D+D DFMG L+++
Sbjct: 228 LYKSKVIYKNLNPVWDEIVVLPIQSLDQK-LRVKVYDRDLTTSDFMGSAFVILSDLELNR 286
Query: 131 PPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLA-N 188
+ L +LED + G ++L + + + + W + L N
Sbjct: 287 TTEHIL-----KLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRN 341
Query: 189 IR-SKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTIN 245
+R S+ +LW + + ++E +++ G E++V+ +LG+Q +++ + ++ N
Sbjct: 342 LRLSESLKKNQLWNGIISITLLEGKNVS---GGSMTEMFVQLKLGDQRYKSK-TLCKSAN 397
Query: 246 PMWNEDLMFVAAEPFEEHL-ILTVEDRVAPNK--DEVLGKCMIPLQYVDKRLDHKPVNTR 302
P W E F F + + IL +E NK +E LG C + + L K N
Sbjct: 398 PQWQEQFDF---HYFSDRMGILDIEVWGKDNKKHEERLGTCKVDIS----ALPLKQANCL 450
Query: 303 WYNLEKHIVVEGEKKKDTKFASRIHMRICLE--GGYHVLDESTHYSSDL----RPTAKQL 356
L+ + + M + L G V D +DL + T +
Sbjct: 451 ELPLDSCL-------------GALLMLVTLTPCAGVSVSDLCVCPLADLSERKQITQRYC 497
Query: 357 WKSS------IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTP 410
++S +G+L++ +L A L+ D G +D +C+ + G ++T T+ + P
Sbjct: 498 LQNSLKDVKDVGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNP 554
Query: 411 KWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470
+WN+ +T+ + D V+ + VFD GDK +GKV I L ++ +
Sbjct: 555 EWNKVFTFPIKDIHDVLEVTVFD----EDGDKPPDF----LGKVAIPLLSIRDGQ----- 601
Query: 471 YPLLVLYPNG-VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRH 529
PN V K ++ A F L M +Y+ P+ + P ++ R
Sbjct: 602 -------PNCYVLKNKDLEQA--FKGVIYLEMDLIYN-PVKASIRTFTPREKRFVEDSRK 651
Query: 530 QATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRILSGIIAVGKWFDQICNWKNPIT 589
+ +I+S + R ++RI I ++ W++ +
Sbjct: 652 LSKKILSRDVDR----------------------VKRITMAIWNTMQFLKSCFQWESTLR 689
Query: 590 TVLIHILFIILVLYPEL-ILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSH-ADSAHPDE 647
+ + +F+I V EL ++P L +F+ Y RP + ++S DS +
Sbjct: 690 STIAFAVFLITVWNFELYMIPLALLLIFV----YNFIRP-----VKGKVSSIQDSQESTD 740
Query: 648 LDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALF 707
+D+E D + R ++ I +Q V+ ++A+ GER+++ +W P ++L
Sbjct: 741 IDDEEDEDDKESEKKGLIERIYMVQDIVSTVQNVLEEIASFGERIKNTFNWTVPFLSSLA 800
Query: 708 VIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKL-------PSVPLNFFRRLPA 757
+ A I+LY P + + L+ G +F KL + L+F R+P+
Sbjct: 801 CLILAAATIILYFIPLRYIILIWGIN-----KFTKKLRNPYSIDNNELLDFLSRVPS 852
|
Homo sapiens (taxid: 9606) |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 103/471 (21%), Positives = 193/471 (40%), Gaps = 88/471 (18%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDR 95
M L + + + + L +D G+ DPYV+ K+G + ++ K NP W + D
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319
Query: 96 IQSSVLEVTVKDKDF-VKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED-RKGDKVRG 153
++ L + V D DF ++DDFMG DL ++ P D L L+D D G
Sbjct: 320 LREP-LYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLT-----LKDPHYPDHDLG 373
Query: 154 ELMLAVWMGTQADEA------FPEAWHSDAATVTGIEGLANIRSKVYLS---------PK 198
++L+V + + E+ ++W + ++ E + + S L P
Sbjct: 374 IILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPV 433
Query: 199 LWYLRVNV---------IEAQDLQPTD-----------------KGR---------FPEV 223
L + R + + Q L+ +D +GR +
Sbjct: 434 LGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDP 493
Query: 224 YVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKC 283
YVK +LG+Q ++++ +T+NP W E F E + +T D+ A +D+ +G+C
Sbjct: 494 YVKFRLGHQKYKSKI-MPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRC 552
Query: 284 MIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDEST 343
+ L + + HK + + E H+V + + + + D S
Sbjct: 553 QVDLSALSREQTHK-LELQLEEGEGHLV--------------LLVTLTASATVSISDLSV 597
Query: 344 HYSSDLRPTAKQLWKSS----------IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAK 393
+ D + + L + S +G L++ ++ A+GLM D G +D +CV +
Sbjct: 598 NSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLM---AADVTGKSDPFCVVE 654
Query: 394 YGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAG 444
+ T T+ + P+WN+ +T+ + D +V+ + V+D D G
Sbjct: 655 LNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLG 705
|
Homo sapiens (taxid: 9606) |
| >sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 53/261 (20%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVF--- 89
Q L V+++KA++LP KD +G+ DP+V++ + +K T+ K NP WN+ F
Sbjct: 148 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 207
Query: 90 AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED-RK 147
F +++ +L + V D D F ++D +G V LN++ + + W L+
Sbjct: 208 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSD 262
Query: 148 GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVI 207
G RGEL+L++ A+ VN+I
Sbjct: 263 GSGSRGELLLSLCYNPSANSII----------------------------------VNII 288
Query: 208 EAQDLQPTDKGRFPEVYVKAQLGNQALRTR----VSASRTINPMWNEDLMF-VAAEPFEE 262
+A++L+ D G + YVK L + R V+ R +NP++NE F + E E
Sbjct: 289 KARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRE 348
Query: 263 -HLILTVEDRVAPNKDEVLGK 282
+I+TV D+ ++++V+GK
Sbjct: 349 TTIIITVMDKDKLSRNDVIGK 369
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|O35681|SYT3_MOUSE Synaptotagmin-3 OS=Mus musculus GN=Syt3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 52/267 (19%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSK-- 93
+L VR+++A DLP KD G DPYV++ + K T+ K NP +N+ F FS
Sbjct: 312 HLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 371
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRLEDRKGDKV 151
+ L +V D D F + D +G+V+ D L E+ ++ PPD PL W + + +K
Sbjct: 372 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDILEGGSEKA 427
Query: 152 R-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQ 210
GEL ++ YL P L V +I+A
Sbjct: 428 DLGELNFSL---------------------------------CYL-PTAGRLTVTIIKAS 453
Query: 211 DLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAAEPFEE-HL 264
+L+ D F + YVKA L ++ R + + T+NP +NE L+F VA E E L
Sbjct: 454 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 513
Query: 265 ILTVEDRVAPNKDEVLGKCMIPLQYVD 291
+ V D +EV+G C + + D
Sbjct: 514 SIAVVDYDCIGHNEVIGVCRVGPEAAD 540
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|Q9R0N7|SYT7_MOUSE Synaptotagmin-7 OS=Mus musculus GN=Syt7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 53/286 (18%)
Query: 11 KETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--- 67
+E + H G + ++ + Q L V+V+KA++LP KD +G+ DP+V++ +
Sbjct: 123 EEDEAHEGCSRENLGRIQFSVGYNFQESTLTVKVMKAQELPAKDFSGTSDPFVKIYLLPD 182
Query: 68 GNYKGTTRHFEKKTNPEWNQVF---AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDL 123
+K T+ K NP WN+ F F +++ VL + V D D F ++D +G V L
Sbjct: 183 KKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPL 242
Query: 124 NEIPKRVPPDSPLAPQWYRLED-RKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTG 182
N++ + + W L+ G RGEL+L++ A+
Sbjct: 243 NKVDL-----TQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSII------------- 284
Query: 183 IEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR----TRV 238
VN+I+A++L+ D G + YVK L + R V
Sbjct: 285 ---------------------VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTV 323
Query: 239 SASRTINPMWNEDLMF-VAAEPFEE-HLILTVEDRVAPNKDEVLGK 282
+ R +NP++NE F + E E +I+TV D+ ++++V+GK
Sbjct: 324 TKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGK 369
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|P40748|SYT3_RAT Synaptotagmin-3 OS=Rattus norvegicus GN=Syt3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 123/275 (44%), Gaps = 58/275 (21%)
Query: 37 MQYLY------VRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQ 87
++YLY VR+++A DLP KD G DPYV++ + K T+ K NP +N+
Sbjct: 305 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 364
Query: 88 VFAFSK--DRIQSSVLEVTVKDKD-FVKDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRL 143
F FS + L +V D D F + D +G+V+ D L E+ ++ PPD PL W +
Sbjct: 365 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 420
Query: 144 EDRKGDKVR-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ +K GEL ++ YL P L
Sbjct: 421 LEGGSEKADLGELNFSL---------------------------------CYL-PTAGLL 446
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ R + + T+NP +NE L+F VA
Sbjct: 447 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 506
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
E E L + V D +EV+G C + + D
Sbjct: 507 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 541
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Rattus norvegicus (taxid: 10116) |
| >sp|Q9BQG1|SYT3_HUMAN Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 121/269 (44%), Gaps = 58/269 (21%)
Query: 37 MQYLY------VRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQ 87
++YLY VR+++A DLP KD G DPYV++ + K T+ K NP +N+
Sbjct: 307 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNE 366
Query: 88 VFAFSK--DRIQSSVLEVTVKDKD-FVKDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRL 143
F FS + L +V D D F + D +G+V+ D L E+ ++ PPD PL W +
Sbjct: 367 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 422
Query: 144 EDRKGDKVR-GELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ +K GEL ++ YL P L
Sbjct: 423 VEGGSEKADLGELNFSL---------------------------------CYL-PTAGRL 448
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS----RTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ R + + T+NP +NE L+F VA
Sbjct: 449 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 508
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMI 285
E E L + V D +EV+G C +
Sbjct: 509 ESVENVGLSIAVVDYDCIGHNEVIGVCRV 537
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|P41885|RBF1_CAEEL Rabphilin-1 OS=Caenorhabditis elegans GN=rbf-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 67/297 (22%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGT---T 74
G IT LT TY ++ L + +++AK+L D G DPYV+ + GN K T +
Sbjct: 829 GSIT---LTLTYHSADKK--LKMHLIRAKNLKAMDSNGFSDPYVKFHLLPGNTKATKLTS 883
Query: 75 RHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDL-----NEI 126
+ EK NPEWN+ ++ ++D + +L VTV D+D + DF+G L NE+
Sbjct: 884 KTIEKTLNPEWNEEMSYYGITEDDKEKKILRVTVLDRDRIGSDFLGETRIALKKLNDNEM 943
Query: 127 PK-RVPPDSPL-APQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIE 184
K + +S L PQ + E+ ++ RG++ + + Q F
Sbjct: 944 KKFNLYLESALPVPQQTKEEE---NEDRGKINVGLQYNIQQGSLF--------------- 985
Query: 185 GLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSA- 240
+N+ +L D F + Y K L ++A R + S
Sbjct: 986 -------------------ININRCVELVGMDSTGFSDPYCKVSLTPITSKAHRAKTSTK 1026
Query: 241 SRTINPMWNEDLMFVAAEPFEE----HLILTVEDRVAPNKDEVLGKCMIPLQYVDKR 293
RT+NP WNE L FV PF++ L + V D D+ +G ++ D+R
Sbjct: 1027 KRTLNPEWNEQLQFVV--PFKDLPKKTLQIGVYDHDLGKHDDYIGGILLSTSAKDER 1081
|
Rab-3 effector. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 22/143 (15%)
Query: 15 PHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGN 69
P + K KL YDL L + +++A++L P+D G DP+V+V +
Sbjct: 4559 PSVSKKKHGSSKLQINYDLGN----LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGAE 4614
Query: 70 YKGTTRHFEKKTNPEWNQVF---AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNE 125
YK T+H +K NPEWNQ + S ++++ LEVTV D D F +DF+G VL DL+
Sbjct: 4615 YKRRTKHVQKSLNPEWNQTVIYKSISMEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 4674
Query: 126 IPKRVPPDSPL--APQWYRLEDR 146
S L P+WY L+++
Sbjct: 4675 T-------SHLDNTPRWYPLKEQ 4690
|
May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 763 | ||||||
| 449437599 | 774 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.984 | 0.914 | 0.0 | |
| 449453842 | 776 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.981 | 0.895 | 0.0 | |
| 15230882 | 773 | calcium-dependent lipid-binding domain-c | 0.997 | 0.984 | 0.895 | 0.0 | |
| 110739553 | 773 | anthranilate phosphoribosyltransferase-l | 0.997 | 0.984 | 0.893 | 0.0 | |
| 14030691 | 773 | AT3g57880/T10K17_90 [Arabidopsis thalian | 0.997 | 0.984 | 0.893 | 0.0 | |
| 357509865 | 775 | Anthranilate phosphoribosyltransferase-l | 0.997 | 0.981 | 0.900 | 0.0 | |
| 225441389 | 777 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.980 | 0.892 | 0.0 | |
| 356504837 | 775 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.983 | 0.899 | 0.0 | |
| 224120414 | 775 | predicted protein [Populus trichocarpa] | 0.998 | 0.983 | 0.888 | 0.0 | |
| 356572078 | 775 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.983 | 0.896 | 0.0 |
| >gi|449437599|ref|XP_004136579.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] gi|449501897|ref|XP_004161488.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1462 bits (3784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/772 (91%), Positives = 742/772 (96%), Gaps = 10/772 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKET PHLGGGK+TGDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETNPHLGGGKVTGDKLTSTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEW+QVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWSQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
D+NEIPKRVPPDSPLAPQWYRLED+KGDK++GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 123 DMNEIPKRVPPDSPLAPQWYRLEDKKGDKLKGELMLAVWMGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G +GLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGR+PEV+VKA LGNQALRTR+S +
Sbjct: 183 GTDGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAVLGNQALRTRISQN 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINP+WNEDLMFVAAEPFEE LIL+VEDRVAPNKDE LG+C IPLQYVD+RLDHKPVN+
Sbjct: 243 RTINPLWNEDLMFVAAEPFEEPLILSVEDRVAPNKDETLGRCAIPLQYVDRRLDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
+WYNLEKHI++EGEKKK+ KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAK LWK SI
Sbjct: 303 KWYNLEKHIILEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKVLWKQSI 362
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDS TPKWNEQYTWEVF
Sbjct: 363 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVF 422
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+TIGVFDNCHL GGDK GG +DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 423 DPCTVVTIGVFDNCHLLGGDKGGGTKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 482
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMMHMY+ PLLPKMHY+HPLTVSQLDSLRHQATQIVSMRL+R
Sbjct: 483 KKMGEIHLAVRFTCSSLLNMMHMYTHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLTR 542
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITTV 591
AEPPLRKEVVEYMLDVGSHMWSMRR +LSG+IAVGKWFDQICNWKNPITTV
Sbjct: 543 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTV 602
Query: 592 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
LIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 603 LIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 662
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FDTFPTSR DIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 663 FDTFPTSRGGDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 722
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
L+AAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 LVAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 774
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453842|ref|XP_004144665.1| PREDICTED: uncharacterized protein LOC101203090 isoform 1 [Cucumis sativus] gi|449453844|ref|XP_004144666.1| PREDICTED: uncharacterized protein LOC101203090 isoform 2 [Cucumis sativus] gi|449522819|ref|XP_004168423.1| PREDICTED: uncharacterized LOC101203090 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1461 bits (3781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/773 (89%), Positives = 741/773 (95%), Gaps = 11/773 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
+PP E+F LKET PHLGGGK+ GDKL STYDLVEQM YLYVRVVKAKDLP KDVTGSCDP
Sbjct: 4 KPPPEDFLLKETNPHLGGGKVAGDKLASTYDLVEQMYYLYVRVVKAKDLPGKDVTGSCDP 63
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+SVLEV+VKDKDFVKDDFMGRVLF
Sbjct: 64 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASVLEVSVKDKDFVKDDFMGRVLF 123
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+P+RVPPDSPLAPQWYRL+DRKGDKV+GELMLAVWMGTQADEAFPEAW+SDAATV+
Sbjct: 124 DLNEVPRRVPPDSPLAPQWYRLDDRKGDKVKGELMLAVWMGTQADEAFPEAWNSDAATVS 183
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G +GLANIRSKVYLSPKLWYLRVN+IEAQDLQPTDKGR+PEV+VKA LGNQALRTR+S S
Sbjct: 184 GADGLANIRSKVYLSPKLWYLRVNIIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISQS 243
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C I LQY+D+RLDH+ VNT
Sbjct: 244 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIQLQYIDRRLDHRAVNT 303
Query: 302 RWYNLEKH-IVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
RW+NLEKH +VVEGEKKK+ KF+SRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK+S
Sbjct: 304 RWFNLEKHVVVVEGEKKKEIKFSSRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKNS 363
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS PKWNEQYTWEV
Sbjct: 364 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFIPKWNEQYTWEV 423
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
FDPCTVITIGVFDNCHLHGG+KAG ++D+RIGKVRIRLSTLETDRVYTHSYPLLVL+PNG
Sbjct: 424 FDPCTVITIGVFDNCHLHGGEKAGVSKDARIGKVRIRLSTLETDRVYTHSYPLLVLHPNG 483
Query: 481 VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLS 540
VKKMGEIHLAVRFTCSSLLNM+HMYS PLLPKMHY+HPLTVSQLDSLRHQATQIVSMRLS
Sbjct: 484 VKKMGEIHLAVRFTCSSLLNMLHMYSHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLS 543
Query: 541 RAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITT 590
RAEPPLRKEVVEYMLDVGSHMWSMRR + SG+IAVGKWFDQICNW+NPITT
Sbjct: 544 RAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVFSGLIAVGKWFDQICNWRNPITT 603
Query: 591 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 650
VLIHILFIILV+YPELILPT+FLYLFLIGVW+YRWRPRHPPHMDTRLSHADS+HPDELDE
Sbjct: 604 VLIHILFIILVMYPELILPTIFLYLFLIGVWHYRWRPRHPPHMDTRLSHADSSHPDELDE 663
Query: 651 EFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 710
EFDTFPTSRP+DIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRA+ALFVIF
Sbjct: 664 EFDTFPTSRPADIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRASALFVIF 723
Query: 711 CLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
CL++AIVLYVTPFQVVALL+G YVLRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 724 CLVSAIVLYVTPFQVVALLSGIYVLRHPRFRYKLPSVPLNFFRRLPARTDCML 776
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230882|ref|NP_191347.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|6729531|emb|CAB67616.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|332646191|gb|AEE79712.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1457 bits (3772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/772 (89%), Positives = 738/772 (95%), Gaps = 11/772 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE TVKDKDFVKDD +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GE KK+TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGE-KKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL+R
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITTV 591
AEPPLRKEVVEYMLDVGSHMWSMRR +LSG+IAVGKWF+QICNWKNPITTV
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 592 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
LIH+LFIILVLYPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110739553|dbj|BAF01685.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1456 bits (3769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/772 (89%), Positives = 737/772 (95%), Gaps = 11/772 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE TVKDKDFVKDD +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDE LG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEALGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GE KK+TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGE-KKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL+R
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITTV 591
AEPPLRKEVVEYMLDVGSHMWSMRR +LSG+IAVGKWF+QICNWKNPITTV
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 592 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
LIH+LFIILVLYPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14030691|gb|AAK53020.1|AF375436_1 AT3g57880/T10K17_90 [Arabidopsis thaliana] gi|21464555|gb|AAM52232.1| AT3g57880/T10K17_90 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/772 (89%), Positives = 738/772 (95%), Gaps = 11/772 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE TVKDKDFVKDD +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GE KK+TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGE-KKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL++
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTQ 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITTV 591
AEPPLRKEVVEYMLDVGSHMWSMRR +LSG+IAVGKWF+QICNWKNPITTV
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 592 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
LIH+LFIILVLYPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509865|ref|XP_003625221.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] gi|124360660|gb|ABN08649.1| C2 [Medicago truncatula] gi|355500236|gb|AES81439.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1454 bits (3765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/774 (90%), Positives = 737/774 (95%), Gaps = 13/774 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKETKPHLGG K++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETKPHLGG-KVSGDKLTSTYDLVEQMQYLYVRVVKAKELPSKDVTGSCDP 61
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ+SVLEV VKDKDFVKDDF+GRV F
Sbjct: 62 YVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASVLEVFVKDKDFVKDDFIGRVWF 121
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLEDRK DKV+GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKSDKVKGELMLAVWMGTQADEAFPEAWHSDAATVS 181
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDLQP+DKGRFPEVYVKA LGNQ LRTR+S S
Sbjct: 182 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVYVKAILGNQTLRTRISQS 241
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
R+INPMWNEDLMFVAAEPFEE LIL+VEDRVAPNK+E+LGKC+IPLQ +D+RLDHKPVNT
Sbjct: 242 RSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHKPVNT 301
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
RW+N+EKH+V+ EG+KKK+ KFASRIHMR+CLEGGYHVLDESTHYSSDLRPTAKQLWKSS
Sbjct: 302 RWFNIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSS 361
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLE+GILNA GLMPMK+ +GRGTTDAYCVAKYGQKWVRTRTIIDS P+WNEQYTWEV
Sbjct: 362 IGVLEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEV 421
Query: 421 FDPCTVITIGVFDNCHL-HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
FDPCTVITIGVFDNCHL HGGDK GG RDS+IGKVRIRLSTLETDRVYTHSYPLLVL+P
Sbjct: 422 FDPCTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPT 481
Query: 480 GVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRL 539
GVKKMGEI LAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLDSLRHQATQIVSMRL
Sbjct: 482 GVKKMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRL 541
Query: 540 SRAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPIT 589
SRAEPPLRKEVVEYMLDVGSHMWSMRR +LSG+IAVGKWFDQICNWKNPIT
Sbjct: 542 SRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPIT 601
Query: 590 TVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 649
TVLIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD
Sbjct: 602 TVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 661
Query: 650 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVI 709
EEFDTFPT+RPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+
Sbjct: 662 EEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVL 721
Query: 710 FCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
FCLIAAIVLYVTPFQVVALL+G YVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 722 FCLIAAIVLYVTPFQVVALLSGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441389|ref|XP_002278165.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1447 bits (3747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/775 (89%), Positives = 739/775 (95%), Gaps = 13/775 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP ++FSLKET PHLGGGK+TGDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPDDFSLKETSPHLGGGKVTGDKLTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTT HFEKKTNPEWN+VFAFSKDR+Q+S+LEV VKDKDFVKDD++GRV+F
Sbjct: 63 YVEVKLGNYKGTTPHFEKKTNPEWNRVFAFSKDRMQASMLEVIVKDKDFVKDDYIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG-ELMLAVWMGTQADEAFPEAWHSDAATV 180
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+G ELMLAVWMGTQADEAFP+AWHSDAA V
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGGELMLAVWMGTQADEAFPDAWHSDAAAV 182
Query: 181 TGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSA 240
+G +GLAN+RSKVYLSPKLWYLRVNVIEAQDLQPTD+GR+PEV+VKA LGNQALRTR+S
Sbjct: 183 SGSDGLANMRSKVYLSPKLWYLRVNVIEAQDLQPTDRGRYPEVFVKAILGNQALRTRISQ 242
Query: 241 SRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVN 300
++INPMWNEDLMFVA+EPFEE LIL+VEDRV NKDEVLG+C IPLQYVD+R DHK +N
Sbjct: 243 IKSINPMWNEDLMFVASEPFEEPLILSVEDRVGNNKDEVLGRCAIPLQYVDRRFDHKIMN 302
Query: 301 TRWYNLEKHIVVEGE-KKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKS 359
+RW+NLEKHIVV+GE KKK+ KFASRIH+RICLEGGYHVLDESTHYSSDLRPT K+LWKS
Sbjct: 303 SRWFNLEKHIVVDGEQKKKEIKFASRIHLRICLEGGYHVLDESTHYSSDLRPTEKRLWKS 362
Query: 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWE 419
SIGVLELGILNAQGL+PMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDS TPKWNEQYTWE
Sbjct: 363 SIGVLELGILNAQGLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSSTPKWNEQYTWE 422
Query: 420 VFDPCTVITIGVFDNCHLHGGDKAGGA-RDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478
V+DPCTVITIGVFDNCHLHGGDKAGGA +DSRIGKVRIRLSTLETDRVYTHSYPLLVL+P
Sbjct: 423 VYDPCTVITIGVFDNCHLHGGDKAGGATKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 482
Query: 479 NGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMR 538
GVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTV+QLDSLRHQATQIVSMR
Sbjct: 483 TGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVNQLDSLRHQATQIVSMR 542
Query: 539 LSRAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPI 588
LSRAEPPLRKEVVEYMLDVGSHMWSMRR +L G+IAVGKWFDQICNWKN I
Sbjct: 543 LSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNSI 602
Query: 589 TTVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDEL 648
TTVLIHILF ILV+YPELILPT+FLYLFLIGVWY+RWRPRHPPHMDTRLSHADSAHPDEL
Sbjct: 603 TTVLIHILFFILVMYPELILPTIFLYLFLIGVWYFRWRPRHPPHMDTRLSHADSAHPDEL 662
Query: 649 DEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 708
DEEFDTFPTSRPSD+VRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV
Sbjct: 663 DEEFDTFPTSRPSDVVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 722
Query: 709 IFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
+FCL+AAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 LFCLVAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 777
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504837|ref|XP_003521201.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Glycine max] gi|356504839|ref|XP_003521202.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1445 bits (3740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/773 (89%), Positives = 737/773 (95%), Gaps = 11/773 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKETKPHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
Y EVK+GNYKGTTRHF+KK+NPEWNQVFAFSKDRIQ+S+LEVTVKDKD VKDDF+GRVLF
Sbjct: 63 YTEVKLGNYKGTTRHFDKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLEDRKGDK +GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVN+IEAQDLQP+DKGR+PEV+VKA LGNQ LRTR+S S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNIIEAQDLQPSDKGRYPEVFVKAALGNQTLRTRISQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE L L+VEDRVAPNK+E LGKC IPLQ VD+RLD KPVNT
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLTLSVEDRVAPNKEESLGKCAIPLQMVDRRLDQKPVNT 302
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
+WYN+EK+IV+ EGEKKK+ KF+S+IHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS
Sbjct: 303 KWYNIEKYIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 362
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLELGILNAQGLMPMKTKDG+GTTDAYCVAKYGQKWVRTRTIIDS P+WNEQYTWEV
Sbjct: 363 IGVLELGILNAQGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEV 422
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
FDPCTVITIGVFDNCHLHGGDK GGA+DS+IGKVRIRLSTLETDRVYTHSYPLLVL+PNG
Sbjct: 423 FDPCTVITIGVFDNCHLHGGDKPGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNG 482
Query: 481 VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLS 540
VKKMGEIHLAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLD+LRHQATQIVSMRLS
Sbjct: 483 VKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLS 542
Query: 541 RAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITT 590
RAEPPLRKE+VEYMLDVGSHMWSMRR +L G+IAVGKWFDQICNWKNPITT
Sbjct: 543 RAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITT 602
Query: 591 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 650
VLIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE
Sbjct: 603 VLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 662
Query: 651 EFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 710
EFDTFPT+RPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF
Sbjct: 663 EFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 722
Query: 711 CLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
CL+AAIVLYVTPFQ+VAL TG YVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 CLVAAIVLYVTPFQIVALFTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120414|ref|XP_002331042.1| predicted protein [Populus trichocarpa] gi|222872972|gb|EEF10103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1442 bits (3732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/772 (88%), Positives = 730/772 (94%), Gaps = 10/772 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
+PP ++F LKET PHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 4 KPPQDDFLLKETNPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDP 63
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
YVEVK+GNYKGTTRHFEKKTNPEWNQVFAFSK+RIQ+S+LEVTVKDKD VKDDF+GRVLF
Sbjct: 64 YVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKERIQASMLEVTVKDKDLVKDDFIGRVLF 123
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
D+NEIPKRVPPDSPLAPQWYRLEDRKGDK +GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 124 DMNEIPKRVPPDSPLAPQWYRLEDRKGDKFKGELMLAVWMGTQADEAFPEAWHSDAATVS 183
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL P+D+GR+PEVYVKA LGNQ LRTRVS S
Sbjct: 184 GTDSLANIRSKVYLSPKLWYLRVNVIEAQDLVPSDQGRYPEVYVKAILGNQVLRTRVSPS 243
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
R+INPMWNEDLMFVA+EPFEE LIL+VEDR+APNKDEVLG+C IP+ +VD+RLDH PVNT
Sbjct: 244 RSINPMWNEDLMFVASEPFEEPLILSVEDRIAPNKDEVLGRCAIPMHHVDRRLDHNPVNT 303
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RW+NLEKH++VEGEKKK+ KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK SI
Sbjct: 304 RWFNLEKHVIVEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKHSI 363
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNAQGLMPMK KDGRGTTDAYCVAKYGQKWVRTRTIIDS TPKWNEQYTWEVF
Sbjct: 364 GVLELGILNAQGLMPMKPKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPKWNEQYTWEVF 423
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTVITIGVFDNCHLHGGDK GG+RDSRIGKVRIRLSTLETDRVYTHSYPLLVL+ NGV
Sbjct: 424 DPCTVITIGVFDNCHLHGGDKPGGSRDSRIGKVRIRLSTLETDRVYTHSYPLLVLHRNGV 483
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLDSLRHQAT IVS+RLSR
Sbjct: 484 KKMGEIHLAVRFTCSSLLNMMHMYSHPLLPKMHYIHPLTVSQLDSLRHQATVIVSVRLSR 543
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITTV 591
+EPPLRKE+VEYMLDVGSHMWSMRR + G+IA+GKWFDQICNWKNPITTV
Sbjct: 544 SEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMNVFGGLIALGKWFDQICNWKNPITTV 603
Query: 592 LIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
LIHILFIILVLYPELILPT+FLYLFLIGVW+YR R RHPPHMDTRLSHA+SAHPDELDEE
Sbjct: 604 LIHILFIILVLYPELILPTIFLYLFLIGVWHYRRRSRHPPHMDTRLSHAESAHPDELDEE 663
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FDTFPTS+ +DIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 664 FDTFPTSQSADIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 723
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
LIAAIVLY+TPFQVVA+L G YVLRHPRFRHKLPSVPLNFFRRLPARTD ML
Sbjct: 724 LIAAIVLYITPFQVVAVLIGLYVLRHPRFRHKLPSVPLNFFRRLPARTDSML 775
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572078|ref|XP_003554197.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1441 bits (3729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/773 (89%), Positives = 735/773 (95%), Gaps = 11/773 (1%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+F LKETKPHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAKDLP KDVTGSCDP
Sbjct: 3 RPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLF 121
Y EVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S+LEVTVKDKD VKDDF+GRVLF
Sbjct: 63 YTEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLEDRKGDK +GELMLAVWMGTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVN+IEAQDLQP+DKGR+PEV+VKA LGNQ LRTR+S S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNIIEAQDLQPSDKGRYPEVFVKATLGNQTLRTRISQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNK+E LG+C IPLQ VD+RLD KPVNT
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVDRRLDQKPVNT 302
Query: 302 RWYNLEKHIVV-EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
+WYN+EKHIV+ EGEKKK+ KF+S+IHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS
Sbjct: 303 KWYNIEKHIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 362
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
IGVLELGIL+A GLMPMKTKDG+GTTDAYCVAKYGQKWVRTRTIIDS P+WNEQYTWEV
Sbjct: 363 IGVLELGILSAHGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEV 422
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
FDPCTVITIGVFDNCHLHGGDK GG++DS+IGKVRIRLSTLETDRVYTHSYPLLVL PNG
Sbjct: 423 FDPCTVITIGVFDNCHLHGGDKPGGSKDSKIGKVRIRLSTLETDRVYTHSYPLLVLNPNG 482
Query: 481 VKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLS 540
VKKMGEIHLAVRFTCSSLLNMMHMYS PLLPKMHY+HPLTVSQLD+LRHQATQIVSMRLS
Sbjct: 483 VKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLS 542
Query: 541 RAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPITT 590
RAEPPLRKE+VEYMLDVGSHMWSMRR +L G+IAVGKWFDQICNWKNPITT
Sbjct: 543 RAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITT 602
Query: 591 VLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 650
VLIHILFIILV+YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE
Sbjct: 603 VLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDE 662
Query: 651 EFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 710
EFDTFPT+R SDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF
Sbjct: 663 EFDTFPTTRASDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIF 722
Query: 711 CLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
CL+AAIVLYVTPFQ+VAL TG YVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Sbjct: 723 CLVAAIVLYVTPFQIVALFTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 763 | ||||||
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.997 | 0.984 | 0.863 | 0.0 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.998 | 0.981 | 0.834 | 0.0 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.984 | 0.976 | 0.775 | 0.0 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.986 | 0.744 | 0.658 | 1.3e-290 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.963 | 0.714 | 0.644 | 1.1e-270 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.895 | 0.659 | 0.650 | 2.2e-256 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.976 | 0.740 | 0.578 | 1.8e-245 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.968 | 0.730 | 0.578 | 1.1e-238 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.976 | 0.962 | 0.566 | 7.9e-236 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.968 | 0.760 | 0.561 | 3.9e-234 |
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3592 (1269.5 bits), Expect = 0., P = 0.
Identities = 667/772 (86%), Positives = 713/772 (92%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKET+PHLGGGK++GDKLTSTYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLF 121
YVEVK+GNYKGTTRHFEKK+NPEWNQVFAFSKDRIQ+S LE T +GRV+F
Sbjct: 63 YVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNE+PKRVPPDSPLAPQWYRLEDRKGDKV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL PTDK R+PEVYVKA +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
RTINPMWNEDLMFVAAEPFEE LIL+VEDRVAPNKDEVLG+C IPLQY+D+R DHKPVN+
Sbjct: 243 RTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RWYNLEKHI+V+GEKK +TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWYNLEKHIMVDGEKK-ETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 361
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVLELGILNA GLMPMKTKDGRGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEVF
Sbjct: 362 GVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVF 421
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
DPCTV+T+GVFDNCHLHGG+K GGA+DSRIGKVRIRLSTLETDRVYTHSYPLLVL+PNGV
Sbjct: 422 DPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEIHLAVRFTCSSLLNMM+MYSQPLLPKMHY+HPLTVSQLD+LRHQATQIVSMRL+R
Sbjct: 482 KKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXXXX 591
AEPPLRKEVVEYMLDVGSHMWSMRR +LSG+IAVGKWF+QICNWKNP
Sbjct: 542 AEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
Query: 592 XXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
YPELILPT+FLYLFLIG+WYYRWRPRHPPHMDTRLSHADSAHPDELDEE
Sbjct: 602 LIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 661
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV+FC
Sbjct: 662 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFC 721
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
LIAA++LYVTPFQVVAL G Y LRHPRFR+KLPSVPLNFFRRLPARTDCML
Sbjct: 722 LIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3489 (1233.2 bits), Expect = 0., P = 0.
Identities = 646/774 (83%), Positives = 701/774 (90%)
Query: 2 RPPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDP 61
RPP E+FSLKETKPHLGGGK+TGDKLT+TYDLVEQMQYLYVRVVKAK+LP KD+TGSCDP
Sbjct: 3 RPPPEDFSLKETKPHLGGGKVTGDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDP 62
Query: 62 YVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLF 121
YVEVK+GNY+GTTRHFEKK+NPEWNQVFAFSKDR+Q+S LE T +GRV+F
Sbjct: 63 YVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIGRVVF 122
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVT 181
DLNEIPKRVPPDSPLAPQWYRLED KG KV+GELMLAVW GTQADEAFPEAWHSDAATV+
Sbjct: 123 DLNEIPKRVPPDSPLAPQWYRLEDGKGQKVKGELMLAVWFGTQADEAFPEAWHSDAATVS 182
Query: 182 GIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS 241
G + LANIRSKVYLSPKLWYLRVNVIEAQDL P+DKGR+PEV+VK +GNQALRTRVS S
Sbjct: 183 GTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRTRVSQS 242
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
R+INPMWNEDLMFV AEPFEE LIL+VEDRVAPNKDEVLG+C +PLQY+DKR D++PVN+
Sbjct: 243 RSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYRPVNS 302
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSI 361
RW+NLEKH+++EG +KK+ KFAS+IHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK +I
Sbjct: 303 RWFNLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNI 362
Query: 362 GVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
GVLELG+LNA GLMPMK K+G RGTTDAYCVAKYGQKW+RTRTIIDS TP+WNEQYTWEV
Sbjct: 363 GVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEV 422
Query: 421 FDPCTVITIGVFDNCHLHGGDKA-GGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
FDPCTV+T+GVFDNCHLHGGDK GG +DSRIGKVRIRLSTLE DRVYTHSYPLLVL+P+
Sbjct: 423 FDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHPS 482
Query: 480 GVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRL 539
GVKKMGEIHLAVRFTCSSLLNMM+MYS PLLPKMHYLHPLTVSQLD+LRHQATQIVS RL
Sbjct: 483 GVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIVSTRL 542
Query: 540 SRAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXX 589
+RAEPPLRKEVVEYMLDVGSHMWSMRR +LSGIIAVGKWF+QIC WKNP
Sbjct: 543 TRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWKNPIT 602
Query: 590 XXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 649
YPELILPT+FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD
Sbjct: 603 TVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELD 662
Query: 650 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVI 709
EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGER QSLLSWRDPRATALFV+
Sbjct: 663 EEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSWRDPRATALFVL 722
Query: 710 FCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
FCLIAA++LY+TPFQVVA G YVLRHPR R+KLPSVPLNFFRRLPARTDCML
Sbjct: 723 FCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPARTDCML 776
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3202 (1132.2 bits), Expect = 0., P = 0.
Identities = 595/767 (77%), Positives = 663/767 (86%)
Query: 7 EFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVK 66
+F+LKET P +G G +TGDKL STYDLVEQM YLYVRVVKAK+LP KDVTGSCDPYVEVK
Sbjct: 9 DFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVK 68
Query: 67 MGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFDLNEI 126
+GNY+G T+HFEK++NPEW QVFAFSK+RIQ+S+LEV +GR++FDLNEI
Sbjct: 69 LGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRIMFDLNEI 128
Query: 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGL 186
PKRVPPDSPLAPQWYRLEDR G KV+GELMLAVWMGTQADEAF +AWHSDAATV G EG+
Sbjct: 129 PKRVPPDSPLAPQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAATV-GPEGV 187
Query: 187 ANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINP 246
+IRSKVYLSPKLWY+RVNVIEAQDL P DK +FPEVYVKA LGNQ LRTR+S ++T+NP
Sbjct: 188 THIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRISQTKTLNP 247
Query: 247 MWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
MWNEDLMFV AEPFEE LIL VEDRVAPNKDE LG+C IPLQ V +RLDH+P+N+RW+NL
Sbjct: 248 MWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNSRWFNL 307
Query: 307 EKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLEL 366
EKHI+VEGE+K + KFASRIH+RI LEGGYHVLDESTHYSSDLRPTAKQLWK SIG+LE+
Sbjct: 308 EKHIMVEGEQK-EIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEV 366
Query: 367 GILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTV 426
GI++A GLMPMK+KDG+GTTDAYCVAKYGQKW+RTRTI+DS TPKWNEQYTWEVFD CTV
Sbjct: 367 GIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCTV 426
Query: 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGE 486
IT G FDN H+ GG +D RIGKVRIRLSTLE DR+YTHSYPLLV +P+G+KK GE
Sbjct: 427 ITFGAFDNGHIPGGS----GKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTGE 482
Query: 487 IHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSRAEPPL 546
I LAVRFTC SL+NM+HMYSQPLLPKMHY+HPL+V QLDSLRHQA IVS RL+RAEPPL
Sbjct: 483 IQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPPL 542
Query: 547 RKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXXXXXXXXX 596
RKE+VEYMLDV SHMWSMRR +LSG+IAVGKWFDQICNW+NP
Sbjct: 543 RKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIHVL 602
Query: 597 XXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFP 656
YPELILPTVFLYLFLIG+W +RWRPRHPPHMDTRLSHAD+ HPDELDEEFDTFP
Sbjct: 603 FIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDTFP 662
Query: 657 TSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAI 716
TSR S+IVRMRYDRLRSI GR+QTV+GDLATQGER SLLSWRDPRAT LFV+FCLIAAI
Sbjct: 663 TSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAI 722
Query: 717 VLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
VLYVTPFQVVALL G YVLRHPRFRHKLPSVPLN FRRLPAR+D +L
Sbjct: 723 VLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2791 (987.5 bits), Expect = 1.3e-290, P = 1.3e-290
Identities = 511/776 (65%), Positives = 626/776 (80%)
Query: 7 EFSLKETKPHLGGGKITG------DKL-TSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSC 59
+F+LKET PHLGGG++ G DK TSTYDLVE+M +LYVRVVKA++LP D+TGS
Sbjct: 240 DFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGSV 299
Query: 60 DPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRV 119
DP+VEV++GNYKG TRHFEK+ +PEWNQVFAF+K+R+Q+SVLEV +G V
Sbjct: 300 DPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGFV 359
Query: 120 LFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAAT 179
FD+N++P RVPPDSPLAPQWYRLED+KG+K++GELMLAVW+GTQADEAF +AWHSDAA
Sbjct: 360 RFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAAM 419
Query: 180 VTGIEGL--ANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTR 237
A +RSKVY +P+LWY+RVNVIEAQDL PTDK RFP+VYVKAQLGNQ ++TR
Sbjct: 420 PVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGNQVMKTR 479
Query: 238 VSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297
+RT+ +WNED +FV AEPFE+HL+LTVEDRVAP KDE++G+ IPL V+KR D
Sbjct: 480 PCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRADDH 539
Query: 298 PVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW 357
++ RWYNLE+ ++V+ ++ K KF+ RIH+R+CLEGGYHVLDESTHYSSDLRP+A+ LW
Sbjct: 540 MIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRPSARPLW 599
Query: 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYT 417
+ IGVLELGILNA GL PMKT++GRGT+D +CV KYGQKWVRTRT++D+ PK+NEQYT
Sbjct: 600 RQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKYNEQYT 659
Query: 418 WEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY 477
WEVFDP TV+T+GVFDN L G+K G RD +IGK+RIRLSTLET R+YTHSYPLLVL+
Sbjct: 660 WEVFDPATVLTVGVFDNGQL--GEK--GNRDVKIGKIRIRLSTLETGRIYTHSYPLLVLH 715
Query: 478 PNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSM 537
P GVKKMGE+H+AVRFTC S NM++ YS+PLLPKMHY+ P +V Q D LRHQA IV+
Sbjct: 716 PTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNIVAA 775
Query: 538 RLSRAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNP 587
RL RAEPPLRKE++E+M D SH+WSMR+ + SG+IAVGKWF IC+W+NP
Sbjct: 776 RLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSWRNP 835
Query: 588 XXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDE 647
PELILPT+FLY+FLIG+W YR+RPR+PPHM+T++S A++ HPDE
Sbjct: 836 ITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVHPDE 895
Query: 648 LDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALF 707
LDEEFDTFPT+R D+VR+RYDRLRS+AGRIQTV+GDLATQGER Q+LLSWRDPRATA+F
Sbjct: 896 LDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRATAIF 955
Query: 708 VIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
VI C IAAIV ++TP Q+V L GF+ +RHPRFRH+LPSVP+NFFRRLPARTD ML
Sbjct: 956 VILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2603 (921.4 bits), Expect = 1.1e-270, P = 1.1e-270
Identities = 488/757 (64%), Positives = 599/757 (79%)
Query: 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTN 82
+GDK +STYDLVEQM YLYV VVKA+DLP DV+GS DPYVEVK+GNYKG T+H EK +N
Sbjct: 279 SGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSN 338
Query: 83 PEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXX-MGRVLFDLNEIPKRVPPDSPLAPQWY 141
P W Q+FAFSK+R+QS++LEVT +GRV DL E+P RVPPDSPLAPQWY
Sbjct: 339 PIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWY 398
Query: 142 RLEDRKGDKV-RGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLW 200
RLED+KG K RGE+MLAVWMGTQADE+FP+AWHSDA V+ L+N RSKVY SPKL+
Sbjct: 399 RLEDKKGMKTNRGEIMLAVWMGTQADESFPDAWHSDAHRVSH-SNLSNTRSKVYFSPKLY 457
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YLR++V+EAQDL P+DKGR P+ VK Q GNQ TR RT+NP W+E+LMFV +EPF
Sbjct: 458 YLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMRATRTPQMRTMNPQWHEELMFVVSEPF 517
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD-HKPVNTRWYNLEKHIVV---EGEK 316
E+ +I++V+DR+ P KDE+LG+ IP++ V R + K + RW+NL++H + E EK
Sbjct: 518 EDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEK 577
Query: 317 KKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMP 376
+K+ KF+S+I +R+C+E GYHVLDESTH+SSDL+P++K L K SIG+LELGIL+A+ LMP
Sbjct: 578 RKE-KFSSKILLRVCIEAGYHVLDESTHFSSDLQPSSKHLRKPSIGILELGILSARNLMP 636
Query: 377 MKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCH 436
MK KDGR TD YCVAKYG KWVRTRT++D+ PKWNEQYTWEV DPCTVITIGVFDN H
Sbjct: 637 MKGKDGR-MTDPYCVAKYGNKWVRTRTLLDALAPKWNEQYTWEVHDPCTVITIGVFDNSH 695
Query: 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496
++ G G +D RIGKVR+RLSTLETDRVYTH YPLLVL P G+KK GE+ LA+R+TC+
Sbjct: 696 VNDG---GDFKDQRIGKVRVRLSTLETDRVYTHFYPLLVLTPGGLKKNGELQLALRYTCT 752
Query: 497 SLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLD 556
+NMM Y +PLLPKMHY+ P+ V +D LRHQA QIV+ RLSR+EPPLR+EVVEYMLD
Sbjct: 753 GFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVATRLSRSEPPLRREVVEYMLD 812
Query: 557 VGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXXXXXXXXXXXXXXXYPEL 606
V HM+S+RR +LS + V KWF+ IC W+NP YPEL
Sbjct: 813 VDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTWRNPITTCLVHVLFLILVCYPEL 872
Query: 607 ILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRM 666
ILPTVFLYLF+IG+W YR+RPRHPPHMD R+S AD+AHPDELDEEFDTFPTSRP+DIVRM
Sbjct: 873 ILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAHPDELDEEFDTFPTSRPADIVRM 932
Query: 667 RYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVV 726
RYDRLRS+ GR+QTVVGDLATQGER+Q+LLSWRDPRATALF++F LI A+ +YVTPFQV+
Sbjct: 933 RYDRLRSVGGRVQTVVGDLATQGERIQALLSWRDPRATALFIVFALIWAVFIYVTPFQVI 992
Query: 727 ALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
A++ G ++LRHPRFR ++PSVP NFF+RLPA++D +L
Sbjct: 993 AIIIGLFMLRHPRFRSRMPSVPANFFKRLPAKSDMLL 1029
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2468 (873.8 bits), Expect = 2.2e-256, P = 2.2e-256
Identities = 457/703 (65%), Positives = 567/703 (80%)
Query: 79 KKTNPEWNQVFAFSKDRIQSSVLEV-TXXXXXXXXXXXMGRVLFDLNEIPKRVPPDSPLA 137
K T PEWNQVFAF+K+RIQSSVLEV +G+V+FDLNEIP RVPP+SPLA
Sbjct: 336 KTTIPEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRVPPNSPLA 395
Query: 138 PQWYRLEDRKGDK--VRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYL 195
PQWYRLED +G+ VRGE+MLAVWMGTQADEAFPEAWH+D+A+V G EG+ NIRSKVY+
Sbjct: 396 PQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSASVHG-EGVFNIRSKVYV 454
Query: 196 SPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFV 255
SPKLWYLRVNVIEAQD+ P+D+ R P+V+VKA +G Q L+T + + +T NP+W EDL+FV
Sbjct: 455 SPKLWYLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLKTSICSIKTTNPLWKEDLVFV 514
Query: 256 AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHI--VVE 313
AEPFEE L+++VEDRV +KDEV+GK +P+ +KRLDH+PV++RW+NL+K+ V+E
Sbjct: 515 VAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVFEKRLDHRPVHSRWFNLDKYGTGVLE 574
Query: 314 GE-KKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQ 372
+ ++K+ KF+SRIH+RICLEGGYHV+DEST Y SD RPTA+QLWK +G+LE+GIL A
Sbjct: 575 PDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGAN 634
Query: 373 GLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF 432
GL+PMK KDGRG+T+AYCVAKYGQKWVRTRTI+D+ +P+WNEQYTWEV+DPCTVIT+GVF
Sbjct: 635 GLVPMKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVF 694
Query: 433 DNCHLHGGDKAGGA--RDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLA 490
DN HL G ++G A RD+RIGKVRIRLSTLE ++YTHS+PLLVL P+G+KK G++ ++
Sbjct: 695 DNSHL-GSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQIS 753
Query: 491 VRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEV 550
VRFT SL N+++ Y PLLPKMHYL P TV+Q+D LR+QA IVS RL RAEPPLRKEV
Sbjct: 754 VRFTTLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEV 813
Query: 551 VEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXXXXXXXXXXXXX 600
VEYMLDV SH+WSMRR +LSG VGKW + +CNW+ P
Sbjct: 814 VEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFIL 873
Query: 601 XXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRP 660
YPELILPT+FLY+F IG+W +R RPRHPPHMD +LS A++ PDELDEEFDTFPTSR
Sbjct: 874 VMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAEAVGPDELDEEFDTFPTSRS 933
Query: 661 SDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYV 720
++VR+RYDRLRS+AGRIQTVVGD+A QGER+QSLLSWRDPRAT+LF++FCL A++VLY
Sbjct: 934 QELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPRATSLFILFCLAASVVLYA 993
Query: 721 TPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
PF+ +AL +G Y LRHP+FR KLPS+P NFF+RLP+ TD +L
Sbjct: 994 MPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDSLL 1036
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2365 (837.6 bits), Expect = 1.8e-245, P = 1.8e-245
Identities = 442/764 (57%), Positives = 577/764 (75%)
Query: 17 LGGGKITG-DKLTS-TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTT 74
+GG + G ++ TS TYDLVE+M++LYVRVVKA+DLP KD+TGS DPYV VK+GN+KG T
Sbjct: 245 VGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTGSLDPYVVVKIGNFKGVT 304
Query: 75 RHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFDLNEIPKRVPPDS 134
HF K T+PEWNQVFAF+KD +QS+ LEV +G V FDL E+ RVPPDS
Sbjct: 305 THFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDDFVGIVKFDLREVQSRVPPDS 364
Query: 135 PLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGL--ANIRSK 192
PLAPQWYRLE+++G+K E+MLAVW GTQADEAF +A SD+ + + AN+RSK
Sbjct: 365 PLAPQWYRLENKRGEKKNYEIMLAVWSGTQADEAFGDATFSDSLVDSDSSNIISANLRSK 424
Query: 193 VYLSPKLWYLRVNVIEAQD-LQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNED 251
VY SP+LWYLRV ++EAQD + +DK R PEV+V+ ++GNQ LRT+ R+ NP W ++
Sbjct: 425 VYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGNQMLRTKFP-QRSNNPKWGDE 483
Query: 252 LMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHI- 310
FV AEPFE++L+L+VED APN+DE +GK +I + ++KR+D KP + RW +LE I
Sbjct: 484 FTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIEKRIDDKPFHDRWVHLEDSIS 543
Query: 311 -VVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGIL 369
++ +K K KFA+R+ + L+GGYHV DES + SSDLRP++++LWK +IGVLELGIL
Sbjct: 544 DAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDLRPSSRKLWKPAIGVLELGIL 603
Query: 370 NAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITI 429
NA MKT++G+GT+D Y VAKYG KWVR+RT+I+S PK+NEQYTWEVFDP TV+TI
Sbjct: 604 NANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMNPKYNEQYTWEVFDPATVLTI 663
Query: 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489
VFDN H GD G RD IGKVRIRLSTL+T RVYTH+YPLLVL P G+KK GE+HL
Sbjct: 664 CVFDNAHFAAGD-GGNKRDQPIGKVRIRLSTLQTGRVYTHAYPLLVLQPTGLKKRGELHL 722
Query: 490 AVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKE 549
AVRFTC+S+ +M+ Y++PLLPKMHY+ PL+ +Q ++L+ QA I+ +RL R+EPPLR+E
Sbjct: 723 AVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKMQAINIIIVRLGRSEPPLRRE 782
Query: 550 VVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXXXXXXXXXXXX 599
VV+Y+ D S ++SMRR + SG ++V KW +Q+C WK P
Sbjct: 783 VVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWMEQVCTWKTPVTTALVHVLYTM 842
Query: 600 XXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSR 659
+PE+ILPTVFLY+ +IG+W YR++PR PPHMD +LS+AD+ + DELDEEFDTFPT R
Sbjct: 843 LVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSYADNVNSDELDEEFDTFPTVR 902
Query: 660 PSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLY 719
DIV+MRYDRLRS+AG++Q+V GD+A QGER+Q+LLSWRDPRATA+FV FC I A+ LY
Sbjct: 903 APDIVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALLSWRDPRATAIFVTFCFIIAMALY 962
Query: 720 VTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
+TPF++VALL+G+Y +RHP+ RH++PS P+NFFRRLPA TD ML
Sbjct: 963 ITPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLPAMTDSML 1006
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2301 (815.1 bits), Expect = 1.1e-238, P = 1.1e-238
Identities = 457/790 (57%), Positives = 572/790 (72%)
Query: 7 EFSLKETKPHLGG-----GKITG--DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSC 59
EFSLKETKP LGG G ++ DK +STYDLVEQMQYLYV +VKAKDL V G
Sbjct: 241 EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDL---SVLG-- 295
Query: 60 DPYVEVKMGNYKGTTRHFEKKT-NPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGR 118
+ EVK+GNY+G T+ + NPEWNQVF FSK+RIQSSV+E+ GR
Sbjct: 296 EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEYT--GR 353
Query: 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAA 178
VLFDL+EIP RVPPDSPLAPQWY++E+R G + GELM++VW GTQADEAF EAWHS A
Sbjct: 354 VLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGNGELMVSVWFGTQADEAFAEAWHSKAG 413
Query: 179 TVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKG----RFPEVYVKAQLGNQAL 234
V IE L++I+SKVYLSPKLWYLR++VIEAQD+ DKG RFPE+ K Q+G+Q L
Sbjct: 414 NVH-IEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQIL 472
Query: 235 RTRV-SASRT---INPMWNEDLMFVAAEPFEEHLILTVEDR-----VAPNKDEVLGKCMI 285
RT + SA T NP WNEDLMFV AEPFE+ + + VEDR + D +G+ I
Sbjct: 473 RTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQI 532
Query: 286 PLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHY 345
P+ V++R V +RW++L+ G + +F SRIH+R+ L+GGYHVLDE+T Y
Sbjct: 533 PISAVERRTGDTLVGSRWFSLDN-----GNN--NNRFGSRIHLRLSLDGGYHVLDEATMY 585
Query: 346 SSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGR--GTTDAYCVAKYGQKWVRTRT 403
+SD+RPTAK+LWK +G+LE+GIL+A GLMPMK +DG+ G D+YCVAKYG KWVRTRT
Sbjct: 586 NSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVRTRT 645
Query: 404 IIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463
++DS PKWNEQYTWEV+DPCTV+T+GVFDN ++ + + RD RIGKVRIRLSTLET
Sbjct: 646 VVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNNS---RDVRIGKVRIRLSTLET 702
Query: 464 DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQ 523
RVYTHSYPL+VL+P+GVKK GE+HLAVR +C + +NM+HMY+ PLLPKMHY PL V
Sbjct: 703 GRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVHM 762
Query: 524 LDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIA 573
L+ LR+Q V+ RLSRAEPPL +EVVEYMLD H+WSMRR ++SG++A
Sbjct: 763 LERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLVA 822
Query: 574 VGKWFDQICNWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHM 633
V K + + +W P +PEL+LP + LY +GVW +R R R+PPHM
Sbjct: 823 VAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPHM 882
Query: 634 DTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQ 693
D R+SHA++ PDELDEEFDTFPTSR D+VRMRYDR+RSIAGR+QTVVGD+A+QGER+Q
Sbjct: 883 DARISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQGERVQ 942
Query: 694 SLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFR 753
+LLSWRDPRAT LF++FCL+AA+ Y P ++ ++G Y LR PRFR KLPS L+FFR
Sbjct: 943 ALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRGLSFFR 1002
Query: 754 RLPARTDCML 763
RLP+R D +L
Sbjct: 1003 RLPSRADSLL 1012
|
|
| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2274 (805.5 bits), Expect = 7.9e-236, P = 7.9e-236
Identities = 438/773 (56%), Positives = 565/773 (73%)
Query: 7 EFSLKETKPHLGGGKITG-DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV 65
+FSLKET P++G G + G +KLTS++DLVE M +LY R+V+A+ LP D +V V
Sbjct: 14 DFSLKETSPNIGNGGVNGGEKLTSSFDLVEAMHFLYARIVRARALPVND------SFVAV 67
Query: 66 KMGNYKGTTRHF-EKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXX-XXXXXMGRVLFDL 123
K+G+YKG T+ NPE+++ FAF+K R+Q +LEV +G+ FD+
Sbjct: 68 KIGSYKGRTKQILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFDV 127
Query: 124 NEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGI 183
EIP RVPPDSPLAPQWYRLEDR G K+ GE+M++VW+GTQADE F EAWHSD+A+VTG
Sbjct: 128 AEIPTRVPPDSPLAPQWYRLEDRNGVKIGGEIMVSVWIGTQADEVFSEAWHSDSASVTG- 186
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRF-PEVYVKAQLGNQALRTRVSASR 242
E + N RSKVYLSP+LWYLRVNVIEAQDL R PE+ +K LGN +R+R+S ++
Sbjct: 187 ENVVNTRSKVYLSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQTK 246
Query: 243 TINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR 302
+++P+WNED+MFVA EPF++ LIL+VED+V P ++E LG+C I L V++R+ PV +
Sbjct: 247 SVSPVWNEDMMFVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPSL 305
Query: 303 WYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIG 362
WYN+E HI GE + +FA RIH+R+ L+GGYHVLDES YSSD R +AK LW IG
Sbjct: 306 WYNVE-HI---GETGEGRRFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWTPPIG 361
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD 422
VLELG+LNA GLMPMK++ GRGTTDAYCVAKYG KWVRTRTI+D+ PKWNEQYTWEV+D
Sbjct: 362 VLELGVLNATGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTWEVYD 421
Query: 423 PCTVITIGVFDNCHLHG-GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
P TVITIGVFDN L G G++ DSRIGK+RIRLSTL T ++YTHSYPL+VL P+GV
Sbjct: 422 PYTVITIGVFDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLKPDGV 481
Query: 482 KKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLSR 541
KKMGEI LAVRFT +S+++M+ Y++PLLP+MHY+ PL++ QLDSLRHQAT I+ + L R
Sbjct: 482 KKMGEIQLAVRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCINLGR 541
Query: 542 AEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKNPXXXX 591
EP L ++VVEYMLDVGS++WS+RR G I KWFD+IC WK+P
Sbjct: 542 NEPALGRDVVEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSPVTSV 601
Query: 592 XXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEE 651
P+ + ++ LY F+ G++ + RPRHPPHMD +LS ADSA PDELDEE
Sbjct: 602 LVHIVCLFVVFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSALPDELDEE 661
Query: 652 FDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFC 711
FD FP+S+ D+++ RYDRLR IAGR+ V+GDLATQGER++SLLSWRDPRAT+LF+ FC
Sbjct: 662 FDVFPSSKSGDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLSWRDPRATSLFLTFC 721
Query: 712 LIAAIVLYVTPFQVVALLTGFYVLRHPRFR-HKLPSVPLNFFRRLPARTDCML 763
++ V+ +++ FYV+RHPR R +PS+P NFFRRLP+R D +L
Sbjct: 722 FVSCGVICFVSMKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRLPSRADSIL 774
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| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2258 (799.9 bits), Expect = 3.9e-234, P = 3.9e-234
Identities = 437/778 (56%), Positives = 564/778 (72%)
Query: 3 PPLEEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPY 62
P ++S+KETKP LGGGK +S +DLVE M++L++++VKA++LP D+TGS DPY
Sbjct: 217 PNPPDYSIKETKPILGGGKRAR---SSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPY 273
Query: 63 VEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTXXXXXXXXXXXMGRVLFD 122
+EVK+GNY G T+HFEK NP WN+VFAFSK QS+VLEV +G + FD
Sbjct: 274 IEVKLGNYTGKTKHFEKNQNPVWNEVFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFD 333
Query: 123 LNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTG 182
LN+IP RV PDSPLAP+WYR+ + KG GE+MLAVW GTQADEAF +A +SDA
Sbjct: 334 LNQIPTRVAPDSPLAPEWYRVNNEKG----GEIMLAVWFGTQADEAFSDATYSDALNAVN 389
Query: 183 IEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPT-DKGRFPEVYVKAQLGNQALRTRVSAS 241
+++RSKVY SP+LWYLRVNVIEAQDL D+ R P YVK +L NQ +RT+ S S
Sbjct: 390 ---KSSLRSKVYHSPRLWYLRVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTKPSHS 446
Query: 242 RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD-HKPVN 300
+NP WNE+ VAAEPFE+ LI+++EDRVAPN++E LG+ IP+ +DKR+D ++ V
Sbjct: 447 --LNPRWNEEFTLVAAEPFED-LIISIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVP 503
Query: 301 TRWYNLEKHIVVEGEKKKDTKFAS-RIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW-- 357
RW++L+ E ++ +FA+ R+H+ +CLEGGYHVLDEST+YSSD RP+ K+L
Sbjct: 504 NRWFSLKT------ENQRRVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSH 557
Query: 358 -KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQY 416
+ S GVLELGIL +GL + + + T DAYCVAKYG KWVRTRT+ + P++NEQY
Sbjct: 558 KQPSFGVLELGILRIEGLN-LSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQY 616
Query: 417 TWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476
TWEV++P TVITIGVFDN ++ G+ G D +IGK+R+R+STLE R+Y+HSYPLLVL
Sbjct: 617 TWEVYEPATVITIGVFDNNQINSGN--GNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVL 674
Query: 477 YPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYLHPLTVSQLDSLRHQATQIVS 536
P+G+KKMGE+HLA+RF+CSS+ M+ Y +PLLPKMHY PL V Q + LR A +V+
Sbjct: 675 RPSGLKKMGELHLAIRFSCSSMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVA 734
Query: 537 MRLSRAEPPLRKEVVEYMLDVGSHMWSMRR----------ILSGIIAVGKWFDQICNWKN 586
RLSRAEPPLRKEVVEY+ D SH+WSMR+ + SG++ G+WF IC WK
Sbjct: 735 ARLSRAEPPLRKEVVEYISDSNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKK 794
Query: 587 PXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPD 646
P PE+ILP + L LF++GVW YR RPR PPHMDTRLS AD+ HP+
Sbjct: 795 PVETTAIHIIFLVLVCSPEMILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPE 854
Query: 647 ELDEEFDTFP-TSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATA 705
EL+EEFDTFP +S+ IV+MRY+RLRSIA R QTVVGD+A QGER+Q+LLSWRDPRAT+
Sbjct: 855 ELNEEFDTFPFSSQDPGIVKMRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATS 914
Query: 706 LFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
+F++ CL++ +VLYV PF+V LL G Y++R PRFR K P P+NFFRRLPA+TDCML
Sbjct: 915 IFMVLCLVSTVVLYVVPFKVFVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT3G57880 | C2 domain-containing protein; C2 domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- tryptophan biosynthetic process; LOCATED IN- endoplasmic reticulum, cell wall; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- C2 membrane targeting protein (InterPro-IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro-IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro-IPR013583), C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- C2 domain-conta [...] (773 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT3G62260 | protein phosphatase 2C, putative / PP2C, putative; protein phosphatase 2C, putative / PP2C, put [...] (384 aa) | • | 0.565 | |||||||
 | AT3G09350 | armadillo/beta-catenin repeat family protein; armadillo/beta-catenin repeat family protein; FUN [...] (363 aa) | • | 0.528 | |||||||
 | TIP | TIP (TCV-INTERACTING PROTEIN); transcription coactivator/ transcription factor; Member of NAc p [...] (451 aa) | • | 0.507 | |||||||
 | BZIP28 | BZIP28; DNA binding / transcription factor; Encodes bZIP28, a putative membrane-tethered transc [...] (675 aa) | • | 0.481 | |||||||
 | AT2G24100 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 23 pl [...] (466 aa) | • | 0.462 | |||||||
 | PDX1.2 | A37; protein heterodimerization; Encodes a protein with pyridoxal phosphate synthase activity w [...] (314 aa) | • | 0.456 | |||||||
 | AT5G10695 | unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular [...] (67 aa) | • | 0.449 | |||||||
 | AT3G06760 | unknown protein; INVOLVED IN- response to water deprivation; EXPRESSED IN- 24 plant structures; [...] (234 aa) | • | 0.435 | |||||||
 | AT4G12400 | stress-inducible protein, putative; stress-inducible protein, putative; FUNCTIONS IN- binding; [...] (558 aa) | • | 0.422 | |||||||
 | AT1G59860 | 17.6 kDa class I heat shock protein (HSP17.6A-CI); 17.6 kDa class I heat shock protein (HSP17.6 [...] (155 aa) | • | 0.420 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 763 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 1e-114 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-89 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 2e-71 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-65 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-24 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-24 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-23 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-21 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-20 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-18 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-18 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-17 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-17 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-16 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-16 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 9e-16 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-15 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 6e-15 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 1e-14 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-14 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-14 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-13 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-13 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 2e-13 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 3e-13 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 4e-13 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 8e-13 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 9e-13 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-12 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 2e-12 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-12 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 4e-12 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-12 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 8e-12 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-11 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-11 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-11 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-11 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 6e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 7e-11 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-10 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 2e-10 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-10 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 4e-10 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-10 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 9e-10 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-09 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 2e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-09 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 3e-09 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 3e-09 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-09 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 5e-09 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 8e-09 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 1e-08 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-08 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 4e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 5e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 8e-08 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 1e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 1e-07 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-07 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 2e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-07 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 2e-07 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 3e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-07 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 6e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 7e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-06 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-06 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-06 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-06 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 2e-06 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 2e-06 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 2e-06 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 2e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-06 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 3e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-06 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 4e-06 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 5e-06 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 5e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 5e-06 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 5e-06 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 6e-06 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 6e-06 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 8e-06 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 8e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-05 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 1e-05 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-05 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 1e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 2e-05 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 2e-05 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 3e-05 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 3e-05 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 9e-05 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-04 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 1e-04 | |
| pfam06398 | 360 | pfam06398, Pex24p, Integral peroxisomal membrane p | 1e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-04 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 2e-04 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-04 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 3e-04 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 3e-04 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 4e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 5e-04 | |
| cd08394 | 127 | cd08394, C2A_Munc13, C2 domain first repeat in Mun | 5e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.001 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 0.001 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.001 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.002 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 0.002 | |
| cd08407 | 138 | cd08407, C2B_Synaptotagmin-13, C2 domain second re | 0.002 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 0.003 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 0.003 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 0.004 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 341 bits (877), Expect = e-114
Identities = 131/156 (83%), Positives = 149/156 (95%)
Query: 608 LPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMR 667
LPT+FLYLF+IG+W YR+RPRHPPHMDTRLSHAD+AHPDELDEEFDTFPTSRP D+VRMR
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 668 YDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVA 727
YDRLRS+AGR+QTVVGD+ATQGERLQ+LLSWRDPRATA+FV+FCL+AA+VLYV PF+VVA
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 728 LLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763
LL GFY LRHPRFR ++PSVPLNFFRRLP+RTD ML
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 1e-89
Identities = 105/151 (69%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YLRV VIEAQDL P+DK R PEV+VKAQLGNQ LRTR S +R NP WNE+LMFVAAEPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
E+HLIL+VEDRV PNKDE LG+ +IPL +++R+D +PV +RW++LE+ +KKK
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR- 119
Query: 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRP 351
KFASRIH+R+CL+GGYHVLDESTHYSSDLRP
Sbjct: 120 KFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 2e-71
Identities = 89/125 (71%), Positives = 102/125 (81%), Gaps = 4/125 (3%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
YLYVRVVKA+ LP S DP VEVK+GNYKG+T+ E+ +NPEWNQVFAFSKDR+Q
Sbjct: 1 YLYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 99 SVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLA 158
S LEV+V DKD KDDF+G V FDL+E+P RVPPDSPLAPQWYRLED+KG +V GELMLA
Sbjct: 57 STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLA 116
Query: 159 VWMGT 163
VW GT
Sbjct: 117 VWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 2e-65
Identities = 88/128 (68%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD 422
+LE+GIL AQGL ++ KDGRG+TDAYCVAKYG KWVRTRT+ DS P+WNEQYTW V+D
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 423 PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK 482
PCTV+T+GVFDN H K D IGKVRIRLSTLE DRVY HSYPLL L P+GVK
Sbjct: 61 PCTVLTVGVFDNSQSH--WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118
Query: 483 KMGEIHLA 490
KMGE+ A
Sbjct: 119 KMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 3e-24
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
L V V++A++LP KD+ G DPYV+V +G K T+ + NP WN+ F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 99 SVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143
L V V DKD F KDDF+G V L+E+ W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 5e-24
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG---TTRHFEKKTNPEWNQVFAFSKDRI 96
L V V+ AK+LPPKD+ G DPYV+V +G K T+ + NP WN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 97 QSSVLEVTVKDKD-FVKDDFMGRV 119
+ + L + V D D F KDDF+G V
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-23
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY---KGTTRHFEKKTNPEWNQVFAFSKDR 95
L V+++ A++LPPKD G DPYV+V + K T+ + NP WN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 96 IQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD 133
+ + LE+ V DKD F +DDF+G+V L+++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-21
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ---ALRTRVSASRTINPMWNEDLMFVAAE 258
LRV VI A++L P D + YVK LG Q +T+V T+NP+WNE F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEVTL 59
Query: 259 PFEEHLILTVEDRVAPNKDEVLGKC 283
P L + V D KD+ +G+
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-20
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
+L V+V++A L D+ G DP+ +++ N + T K NPEWN++F F I
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH- 60
Query: 99 SVLEVTVKDKDFVKD-DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELM 156
VLEVTV D+D K +F+G+V L I +WY L+D+K + +G ++
Sbjct: 61 DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSIL 113
Query: 157 L 157
L
Sbjct: 114 L 114
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
L VRV++A ++ D+ + D YVE+ + + K T+ + NP WN+ F F
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127
+VLE+TV D+D+V DD +G VLFD++++
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDVSKLK 92
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-18
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPF 260
LRV VIEA++L D + YVK LG Q +T+V T+NP+WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKV-VKNTLNPVWNETFEFPVLDPE 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
+ L + V D+ +KD+ LG+ IPL + W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDS---GKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-17
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 40 LYVRVVKAKDLPPKDV--TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ 97
L V VV+AKDL KD G DPY + +G + T+ NP+WN F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 98 SSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK---VRG 153
+ +L++ + DKD F D++G L E+ + + +W L+ + K V G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLKSTRPGKTSVVSG 120
Query: 154 ELML 157
E+ L
Sbjct: 121 EIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 47/128 (36%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD---RI 96
L V VV A+DL PKD GS YVE+ K TR K NP WN+ F+ R+
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 97 QSSVLEVTVKDK--DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRG 153
+ VLEV V + + F+GRV P S Q Y LE R +VRG
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISGTS----FVPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 154 ELMLAVWM 161
E+ L V++
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-16
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 19/116 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS-- 92
L V V++A+DLPP+D +PYV+V + K T+ +K NPEWNQ F +S
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 93 -KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPL--APQWYRLE 144
++ ++ LEVTV D D ++DF+G V+ DL D+ L P WY L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--------DALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-16
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ---ALRTRVSASRTINPMWNEDLMFVAA 257
L V +I A++L P DKG + YVK L +T+V T+NP+WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKV-VKNTLNPVWNETFEFEVP 59
Query: 258 EPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKP 298
P L + V D+ +D+ +G+ IPL + H+
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-16
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L V++A+DL PKD G+ DP+V V T +K P WN+VF F S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL--EDRKGDKVRGEL 155
L V V D D V K+DF+G+V+F + + + + W+RL + R ++ G L
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRLLPDPRAEEESGGNL 115
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEV 103
+V+ K+LPP D G DPYV+ ++GN K ++ K NP+W + F QS +LE+
Sbjct: 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65
Query: 104 TVKDKDF-VKDDFMGRVLFDLNEIPK 128
V DKD KD+F+GR DL+ +P+
Sbjct: 66 EVWDKDTGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-15
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 40 LYVRVVKAKDLPPKD------VTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK 93
L + V++A+DL KD V G DPYV V++G ++ ++ NP+WN+V+
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 94 DRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145
D + LE+ + D+D KDDF+GR+ DL + K +W LED
Sbjct: 63 DEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEK-----KGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQS- 98
L VRVV+ +L +D T S DPYV + +GN K TR +K NP WN+ S + +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS---VPNP 59
Query: 99 -SVLEVTVKDKD-FVKDDFMGRVLFDL 123
+ L++ V DKD F KDD MG DL
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-14
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 26/127 (20%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFE--KKTN-PEWNQVFAF---- 91
L VRV++ +DL K G+CDP+ V + K T+ + KKTN P +++ F F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 92 --SKDRIQS---------SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQ 139
S ++ S L V + V DDF+G V L + + +
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114
Query: 140 WYRLEDR 146
WY L+ R
Sbjct: 115 WYFLQPR 121
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-14
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV---RTRTIIDSPTPKWNEQYTWEV 420
L + +++A+ L P D G +D Y G + +T+ + ++ P WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 421 FDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVR 455
P + I V+D +D IG+V
Sbjct: 58 TLPELAELRIEVYDYDRFG--------KDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAF---SK 93
L ++++KA +LP KD +G+ DP+V++ + +K T+ K NP WN+ F F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
+++Q VL + V D D F ++D +G V LN++
Sbjct: 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVFD 422
L + ++ A+ L D G +D Y G ++ +T+ + ++ P WNE + + V D
Sbjct: 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 423 P-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSYPL 473
P +T+ V+ DK ++D +G+V I LS L PL
Sbjct: 58 PESDTLTVEVW--------DKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-13
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 42 VR--VVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKT-NPEWNQVFAFSKDRIQ 97
VR VV+A++L PKD G DPY+++K+G K ++ T NP + ++F
Sbjct: 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61
Query: 98 SSVLEVTVKDKDFV-KDDFMGRVLFDL 123
+S+L+++V D D + DD +G + DL
Sbjct: 62 NSILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-13
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 40 LYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWN-QVFAFSKD--R 95
L VRVV A+DLP D + D +VEVK G+ T +K NP WN + F F D
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60
Query: 96 IQSSVLEVTVKDKD-FVKDDFMGRVLFDLN 124
+Q L++ V D D + +D +G+V DLN
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-13
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTR--HFEKKT 81
+LT Y Q Q L V V K ++LPP D + DPYV + + K T R +K
Sbjct: 6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN 63
Query: 82 -NPEWNQVFAF--SKDRIQSSVLEVTVKDKD--FVKD-DFMGRVLFDLNEIPKRVPPDSP 135
NP +++ F F S + ++ L+V VK+ ++ +G+VL DL+++ S
Sbjct: 64 LNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL-----DLSK 118
Query: 136 LAPQWYRLE 144
QWY L
Sbjct: 119 GFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 8e-13
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL------GNQALRTRVSASRTIN 245
+LWY L V V++A+DL P D G YVK L ++ RT+ +T+N
Sbjct: 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKR-RTKTVK-KTLN 65
Query: 246 PMWNEDLMF--VAAEPFEEHLI-LTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR 302
P WN+ + V E +E + +TV D +++ LG+ +I L D LD +P
Sbjct: 66 PEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--DALLDDEP---H 120
Query: 303 WYNLE 307
WY L+
Sbjct: 121 WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-13
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L V +V+ +DL P + G DPY EV MG+ + T+ NP+WN F ++
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 100 VLEVTVKDKD-FVKDDFMGRVLFDLNEIPK 128
VL +TV D+D F DDF+GR + +I K
Sbjct: 77 VLCITVFDRDFFSPDDFLGRTEIRVADILK 106
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-12
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWE 419
L + I++A+ L P D G +D Y + +T+ + ++ P WNE + +E
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 420 VFDPCT-VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463
V P + I V+D RD IG+V I LS L
Sbjct: 58 VPPPELAELEIEVYDKDRFG--------RDDFIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS-K 93
L V V +AK+L P D G DPYV++K+ K T+ +K NP WN+ F F K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
+ L + V D D ++DFMG + F ++E+ K P D WY+L +++
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDG-----WYKLLNQE 123
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-12
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-------KMGNYKGTTRHFEKKTNPEWNQVFAF- 91
L V V+KA++LPP D G DPYV+V K+ K + + NP +N+ F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--GTLNPVFNEAFSFD 73
Query: 92 -SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLN 124
++++ L +TV DKD +++ +G+V+ +
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-12
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF------- 91
Y+Y +A+DL D +G DP+ V N T ++ +P W+Q F
Sbjct: 6 YIY----QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 92 SKDRIQSS----VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVP-PDSPLAPQWYRLED 145
S + I + V+E+ D+D V KD+F+GR + + K D P QW+ +
Sbjct: 62 SPEEIAQNPPLVVVELF--DQDSVGKDEFLGRSVAK--PLVKLDLEEDFPPKLQWFPI-- 115
Query: 146 RKGDKVRGELMLAV 159
KG + GEL+ A
Sbjct: 116 YKGGQSAGELLAAF 129
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-12
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-------GNYKGTTRHFEKKT-NPEWNQVF 89
Q L V ++ A++L P D GS DP+V+V++ T+ +KKT P +++ F
Sbjct: 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQ-VKKKTLFPLFDESF 74
Query: 90 AFS----KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQ 139
F+ + ++ ++L TVKD D + +DF G LN+IP S
Sbjct: 75 EFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-12
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRI 96
L + + + ++L +D G+ DPYV+ K G YK T + K NP W++ F + +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59
Query: 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
+ L + V D D DDFMG DL+ + P + L +LED D+ G +
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDEDLGYI 113
Query: 156 MLAV 159
L V
Sbjct: 114 SLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-11
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF----SKDR 95
+ + VV A+ L KD TG+ DPYV V++G K T+ + NP WN+ F F S DR
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62
Query: 96 IQSSVLEVTVKDKDFVK-------DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
I+ V + K +K DDF+G+ + ++ + S WY LE R
Sbjct: 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-------SGEMDVWYNLEKR 113
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 16/120 (13%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTRVSASR--TINPMWNEDLMF-VA 256
L V V++A++L P+D + YVK L G + L+ + ++ + T+NP++NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 257 AEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYNL 306
AE EE L++TV D+ + ++EV+G+ ++ + L+H KP+ RW+ L
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPI-ARWHKL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGT---TRHFEKKTNPEWNQVFAF--- 91
L+ +++AK L D G DPYV++ + G K T T+ K NPE+N+ +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 92 SKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDL-NEIPKRV 130
+++ IQ L + V D+D +DF+G L P +
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-11
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT-------TRHFEKKTNPEWNQVFAFS 92
L V+V+ DL KD+ G+ DPYV++ + + G T+ +K NP+WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 93 KDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVP-PDSPLAPQWYRLEDR--KGD 149
+ + +L + +DDF+G+V LN +P P + + Y L R K
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS- 120
Query: 150 KVRGELML 157
+V+G L L
Sbjct: 121 RVKGHLRL 128
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-11
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQ 87
YD Q L V +++A DLP D+ G+ DPYV+V + K T+ K NP +N+
Sbjct: 11 YDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 68
Query: 88 VFAFS--KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
F F + + L +V D D F K D +G V L +
Sbjct: 69 TFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-11
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 19/113 (16%)
Query: 368 ILNAQGLMPMKTKDGRGTTDAYCVAKY-GQKWVRTRTIIDSPTPKWNEQYTWEVFDPCT- 425
+++AQ LMP KDG+G++ AY + GQK RTRT P WNE+ + V DP
Sbjct: 6 VVDAQDLMP---KDGQGSSSAYVELDFDGQK-KRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 426 ---VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHSYPL 473
V+ + V++ D+ G R S +G+VRI ++ ++ V YPL
Sbjct: 62 SNLVLEVYVYN-------DRRSGRRRSFLGRVRISGTSFVPPSEAVVQR-YPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEV------YVKAQLGNQALRTRVSASRTINPMWNEDLMFV 255
LR++VIEAQDL DK V YV ++G Q +++V +NP WNE ++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNE--VYE 59
Query: 256 AAEPFEEHLILTVE----DRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
A L +E D P+KD+ LG+ I L V+K K W LE
Sbjct: 60 AVVDEVPGQELEIELFDED---PDKDDFLGRLSIDLGSVEK----KGFIDEWLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT--------NPEWNQVFA 90
L V V+KA++LP K DPY +++G KKT +PEW++
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIG-------GVTKKTKTDFRGGQHPEWDEELR 54
Query: 91 FSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK 150
F + +L+V V D D K D +G DL+ K D WY L KG +
Sbjct: 55 FEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFD-----DWYEL-TLKG-R 107
Query: 151 VRGELML 157
GE+ L
Sbjct: 108 YAGEVYL 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 38/133 (28%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPY------VEVKMGNYKGTTRHFEKKT------------ 81
L V V++AK L KDV G DPY + N + + + +
Sbjct: 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89
Query: 82 -----------NPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRV 130
NP WN+ F F + + + L + + D D DDF+G V L ++P
Sbjct: 90 IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP--- 143
Query: 131 PPDSPLAPQWYRL 143
S W++L
Sbjct: 144 ---SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-10
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 21/122 (17%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAFS 92
+ V ++KA++L D+ G+ DPY VK+ R +KKT NP +N+ F F+
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPY--VKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 93 --KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWY 141
+R++ + L +TV DKD + ++D +G++ + P P+A QW+
Sbjct: 75 IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QWH 133
Query: 142 RL 143
RL
Sbjct: 134 RL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-10
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
+L+V VI A L D G + + +L N L+T + +T+NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTH-TIYKTLNPEWNKIFTF-PIKDI 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L +TV D K E LGK IPL L K +WY L KD
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPL------LSIKNGERKWYAL-----------KDK 102
Query: 321 KFASRIHMRICLE 333
K +R I LE
Sbjct: 103 KLRTRAKGSILLE 115
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-10
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNE--DLMFVAAEP 259
+ + ++E ++L P D + YVK +LGN+ +++V S+T+NP W E DL
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKV-CSKTLNPQWLEQFDLHL----- 55
Query: 260 FEEH---LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
F++ L + V D+ KDE +G+C I L L + ++ LE
Sbjct: 56 FDDQSQILEIEVWDKDTGKKDEFIGRCEIDLS----ALPREQTHSLELELED 103
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVL 101
V V A+ L +D G DPYV +K + + +PE++ F + + +S +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 102 EVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAV 159
+ V + + + D+F+G+ + + PL + +V G + + V
Sbjct: 67 -IQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKR----GRDAAGEVPGTISVKV 119
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKM----GNYKGTTRHFEKKTNPEW 85
YDL E+ L V ++KA++LPP+ CDP+V+V + ++ K NP +
Sbjct: 9 YDLEEE--QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSL-QSKVKRKTQNPNF 65
Query: 86 NQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNE 125
++ F F S +Q L ++V D D F + +G VLF L +
Sbjct: 66 DETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-09
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV--RTRTIIDSPTPKWNEQ-YT 417
IGVL + I +A+GL GT D Y + RT+ D+ P WNE Y
Sbjct: 1 IGVLAVTIKSARGLKGSDIIG--GTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKY- 57
Query: 418 WEVFDPCTVITIGVF-DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTH-SYPLLV 475
I + + +L D +D IG LS+L + + + LL
Sbjct: 58 ---------ILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL- 107
Query: 476 LYPNGVKKMGEIHLAVRF 493
K +GE++ +RF
Sbjct: 108 ---RNGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAFS 92
L V V+KA+ LP DV+G DPYV+V + Y G R +KKT NP +N+ F F
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNL--YYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 93 --KDRIQSSVLEVTVKDKDFV-KDDFMGRVL 120
+ ++ +E V D D V K++ +GR++
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGRLV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-09
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 23/132 (17%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF-----SKDRI 96
V V++A+ L K +G+ D YV +++G K +T EK T+P W + +F
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI------PKRVPPDSPLAPQWYRLEDRKG- 148
+ L++TV ++ + D F+G+V LN++ + +W++LE + G
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT---------RWFKLESKPGK 113
Query: 149 -DKVRGELMLAV 159
DK RGE+ + +
Sbjct: 114 DDKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 39 YLY-VRVVKAKDLPPKDVTGSCDPYVEVKMGNYK---GTTRHFEKKTNPEWNQVFAFSKD 94
+L+ +R+V+A++L G DPYV + N K TR NP W++ F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 95 RIQSSVLEVTVKDKDFVKD-DFMGRVLFDLNEIPKR 129
+ + TV D+ FV D GR L+ PKR
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKLD--PKR 94
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-09
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-------KMGNYKGTTRHFEKKT-NPEW 85
Q + L V +++ +L D G DP+V++ K +K + KKT NPE+
Sbjct: 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVK---KKTLNPEF 65
Query: 86 NQVFAF--SKDRIQSSVLEVTVKDKDFVK-DDFMGRVLFDLN 124
N+ F + + LE+TV DKD K +D++G + +N
Sbjct: 66 NEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 8e-09
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKT-NPEWNQVFAFSKDR 95
L V V+ A++LP D G DP+V+ + +K T KKT NP WN+ F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT---IKKTLNPVWNESFEVPVPS 57
Query: 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126
+VL+V V D D KDD +G DL+++
Sbjct: 58 RVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRH--FEKKT-NPEWNQVFAF-- 91
M L V++++A++L P+D +G+ DPY +V++ + T+ KKT NPE+++ F F
Sbjct: 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEV 74
Query: 92 SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
+ LEV + D D F +D+ +G V L E+
Sbjct: 75 PPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF- 91
L V +++AK+L DV G DPY VK+ + R +KKT NP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPY--VKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 92 -SKDRIQSSVLEVTVKDKDFV-KDDFMGRVL 120
++IQ L VTV D D + K+D +G+V+
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 202 LRVNVIEAQDLQPTD-KGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L+V V+ +L D P YV LGNQ ++TRV + +NP+WNE+L P
Sbjct: 4 LKVRVVRGTNLAVRDFTSSDP--YVVLTLGNQKVKTRV-IKKNLNPVWNEELTLSVPNP- 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQ 288
L L V D+ +KD+ +G+ I L+
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDLE 87
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFS----- 92
YL V V++A+DL P D + +V+ ++GN TR + + NP WN+ F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 93 KDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145
+D + SV + +KD +GR + LN+I +RV D P+ +W+ LE
Sbjct: 61 EDHLILSVEDRVGPNKDEP----LGRAVIPLNDIERRV-DDRPVPSRWFSLER 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 384 GTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKA 443
++D Y V G + V+TR I + P WNE+ T V +P + + VFD D
Sbjct: 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSM 79
Query: 444 GGA 446
G A
Sbjct: 80 GEA 82
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-08
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 380 KDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438
+D GT+D Y KYG K V +++TI + P W+E++T + D + I VFD
Sbjct: 15 RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDY---- 70
Query: 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494
D+ G D +G + LSTLE ++ L PN + +G I L V T
Sbjct: 71 --DR--GLTDDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YL V V++A+ L P + + V+ +LGN T+ + RT NP WN+ F
Sbjct: 1 YLYVRVVKARGL-PANSN---DPVVEVKLGNYKGSTK-AIERTSNPEWNQVFAFSKDRLQ 55
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRL--DHKPVNTRWYNLE 307
L ++V D+ KD+ LG L V R+ D P+ +WY LE
Sbjct: 56 GSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF----VAAE 258
+V V++A+ L K + YV QLG + T V +T +P+W E+ F + +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSV-KEKTTSPVWKEECSFELPGLLSG 60
Query: 259 PFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKK 317
L LTV R D+ LG+ IPL +D+ + TRW+ L E +
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRR--RTRWFKL------ESKPG 112
Query: 318 KDTKFASRIHMRI 330
KD K I + I
Sbjct: 113 KDDKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 371 AQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVF-DPCTVIT 428
+ L PM D G +D Y + G +K+ +++ + P+W EQ+ +F D ++
Sbjct: 9 GKNLPPM---DDNGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64
Query: 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
I V+ DK G +D IG+ I LS L ++ ++ L
Sbjct: 65 IEVW--------DKDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++E +DL+P + + Y + +G+Q +T+V S T+NP WN + F + +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKV-VSDTLNPKWNSSMQFFVKDLEQ 75
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPL 287
+ L +TV DR + D+ LG+ I +
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRV 101
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 209 AQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTV 268
A++L + P YV+ +G +++V RT NP+W E F+ P + L + V
Sbjct: 9 AKNLPLAKSTKEPSPYVELTVGKTTQKSKV-KERTNNPVWEEGFTFLVRNPENQELEIEV 67
Query: 269 EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT--RWYNLEK 308
+D + LG +PL L +P T + + L+
Sbjct: 68 KDD---KTGKSLGSLTLPL----SELLKEPDLTLDQPFPLDN 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTTRHFEKKTNPEWNQVFAFSKD 94
L+V V +AK+LP G+ D +V+ K K T +K NP WN F +
Sbjct: 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGV 88
Query: 95 R---IQSSVLEVTVKDKD-FVKDDFMG 117
+ + LE+TV D D +DF+G
Sbjct: 89 SPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQ 97
L V ++ AK L D G DPYV ++ K NPEWN+ F F+ +
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK-GDGRNPEWNEKFKFTVEYPG 61
Query: 98 SSV---LEVTVKDKD-FVKDDFMGRVLFDLNEI 126
L + + DKD F DDF+G L +
Sbjct: 62 WGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 40 LYVRVVKAKDLPPKDV-TGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAF---S 92
L V +++ +DLP D +G+ DPYV++++ +K TR K NP +++ F F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77
Query: 93 KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIP 127
+++Q L V D + +DD +G V+ L
Sbjct: 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-07
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 42 VRVVKAKDLPPKDVTGSC--DPYVEVKM-GNYKGTTR-HFEKKTNPEWNQVFAFSKD--- 94
+ ++ A+DL K+V Y V + ++K +T + TNP WN+ F D
Sbjct: 4 ITIISAEDL--KNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 95 -RIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR 152
+ L + V + + D +G V L ++ P L Y+L G K +
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQ 120
Query: 153 G 153
G
Sbjct: 121 G 121
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V V++AQDL P D YV+ Q RTR + +NP+WNE L+F ++P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTK-PKDLNPVWNEKLVFNVSDP-S 59
Query: 262 EHLILTVE-----DRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
L +E DR + + LG+ I + + Y LEK
Sbjct: 60 RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF---VPPSEAVVQRYPLEK 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 40 LYVRVVKAKDLPP--------------KDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEW 85
++ +A+DLP + DPYVEV K T + NPEW
Sbjct: 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEW 61
Query: 86 NQVFAFSK------DRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126
N+ F + +RI+ + ++D D V DD +G DL++I
Sbjct: 62 NEQIVFPEMFPPLCERIK-----IQIRDWDRVGNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRF--PEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEP 259
LRV+V+EA+DL D+ + Y +G Q +T+ T+NP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQT-IPNTLNPKWNYWCEFPIFSA 61
Query: 260 FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK-PVNTRWYNLE-----KHIVVE 313
+ L L + D+ + LG+ I L+ + D K + +W L+ K VV
Sbjct: 62 QNQLLKLILWDKDRFAGKDYLGEFDIALE--EVFADGKTGQSDKWITLKSTRPGKTSVVS 119
Query: 314 GEK 316
GE
Sbjct: 120 GEI 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
GVL + ++ A+ L K + G+G +D Y + G + +T+TI ++ PKWN + +F
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 422 DP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYT-HSYPLLVLYPN 479
++ + ++D G D G + + +V T ++D+ T S
Sbjct: 60 SAQNQLLKLILWDKDRFAGKDYLGEFDIA-LEEVFADGKTGQSDKWITLKS----TRPGK 114
Query: 480 GVKKMGEIHLAVRFT 494
GEIHL +F+
Sbjct: 115 TSVVSGEIHL--QFS 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 29/137 (21%)
Query: 362 GVLELGILNAQGLMPMKTKD------GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQ 415
GVL + ++ AQ L+ KD +G +D Y + + G + +++ I ++ PKWNE
Sbjct: 1 GVLRIHVIEAQDLV---AKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 416 YTWEVF---DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
Y E P + I +FD +D +G++ I L ++E P
Sbjct: 58 Y--EAVVDEVPGQELEIELFDE---------DPDKDDFLGRLSIDLGSVEKKGFIDEWLP 106
Query: 473 LLVLYPNGVKKMGEIHL 489
L VK G +HL
Sbjct: 107 L-----EDVKS-GRLHL 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 32 DLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-TTRHFEKKTNPEWNQVFA 90
++VE YL + + ++LP D G DP+V++ + T+ +K NP WN+ F
Sbjct: 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFT 1093
Query: 91 FSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVP 131
VL + V D D K+D +G DL+++
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTRVSA--SRTINPMWNEDLMFVAA 257
L V ++EA++L+ D G + YVK L + L+ + + RT+NP +NE F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV- 75
Query: 258 EPFEE----HLILTVEDRVAPNKDEVLGKCMI 285
PFE+ HLI+TV D K++ +GK ++
Sbjct: 76 -PFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-GNQALRTRVSASRTINPMWNEDLMFV--AAE 258
L + +I A+DL+ + +VY + + T V NP WNE L F
Sbjct: 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 259 PFEEHLILTVE--DRVAPNKDEVLGKCMIPLQYV 290
+ L LT+E D+++G+ +PL+ +
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 29/129 (22%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTRHFE--KKTN-PEWNQVFAF--- 91
L VRV++ DL K+ G+CDPY V + N K T+ + KKTN P++++ F F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 92 ---SKDRIQS-------SVLEVTVK---DKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAP 138
S ++ Q LE+ V D F+G V IP R +
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEV-----RIPLRGLDLQAGSH 114
Query: 139 Q-WYRLEDR 146
Q WY L+ R
Sbjct: 115 QAWYFLQPR 123
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 40 LYVRVVKAKDLPPKDVT-GSCDPYVEV-----KMGNYKGTTRHFEKKTNPEWNQVFAF-- 91
L V + + ++L D +PYV+V K K T + TNP +N+ +
Sbjct: 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75
Query: 92 SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143
SK ++++ L+++V D F ++ F+G V L+ DS +WY L
Sbjct: 76 SKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL----DSQ-QSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 40 LYVRVVKAKDLPPKD-VTGSCDPYVEV---KMGNYKGTTRHFEKKTNPEWNQ--VFAFSK 93
L V + +A DLP D TGS DPYV K G +TR K NP W + +
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62
Query: 94 DRIQSSV-LEVTVKDKD-FVKDDFMGRVLFDLNEI 126
D +++ L + D D F DD +GRV DL E+
Sbjct: 63 DEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 25/119 (21%)
Query: 40 LYVRVVKAKDLPPKDVTGSC-DPYVEVKMGNY---------KGTTRHFEKKTNPEWNQVF 89
L+V V+ AK+LP D GS DPYV+ Y K T+ K NP +N++
Sbjct: 15 LFVMVMHAKNLPLLD--GSDPDPYVKT----YLLPDPQKTTKRKTKVVRKTRNPTFNEML 68
Query: 90 A---FSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
+ +Q VL+V+V D V+++F+G V L ++ + +WY L
Sbjct: 69 VYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPLG 122
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
LR +V+EA+DL P D+ + +V+ Q L T V ++ P WNE F E +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSV-VKKSCYPRWNEVFEFELMEGAD 60
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
L + V D +K++ LGK + +Q L W+ L
Sbjct: 61 SPLSVEVWDWDLVSKNDFLGKVVFSIQ----TLQQAKQEEGWFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQS 98
LY+R+V+ K+LP KD+TGS DPY VK+ N T K NP W + +
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61
Query: 99 SVLEVTVKDKDFV-KDDFMGRV 119
+V V D+D + +DD +G+V
Sbjct: 62 TV-SFYVLDEDTLSRDDVIGKV 82
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-06
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF--SKDRIQ 97
L+V + AK+LP T PYVE+ +G ++ E+ NP W + F F Q
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 98 SSVLEVTVKDKD 109
LE+ VKD
Sbjct: 62 E--LEIEVKDDK 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFD 422
L L IL A+ L +GT D YC Q V RT+T+ P W E++ ++
Sbjct: 2 LRLRILEAKNLPS------KGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDP- 53
Query: 423 PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK 482
P V F + DK RD IGKV LS L+ + +PL + P+
Sbjct: 54 PPDV----TFFTLSFYNKDKRSKDRDIVIGKV--ALSKLDLGQGKDEWFPLTPVDPDSE- 106
Query: 483 KMGEIHLAVRF 493
G + L R+
Sbjct: 107 VQGSVRLRARY 117
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 634 DTRLSHADSA-HPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQ 688
D SH A PD L + ++ D V L S+ +G+L
Sbjct: 71 DNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF------- 254
+ + V+ AQ L DK + YV Q+G RT+ + + +NP+WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTK-TIPQNLNPVWNEKFHFECHNSSD 61
Query: 255 ---VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
V ++ + ++ + D+ LG+ +I ++ + +D WYNLEK
Sbjct: 62 RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD------VWYNLEK 112
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V +I A+ LQ TD + YV Q Q +++V+ NP WNE F P
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 262 E---HLILTVEDRVAPNKDEVLGKCMIPLQ 288
LIL + D+ + D+ +G+ I L+
Sbjct: 63 GGDTKLILRIMDKDNFSDDDFIGEATIHLK 92
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-06
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 48 KDLPPKD-VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVF-AFSKDRIQSSVLEVT 104
K L + TG PY E+ + TTR +K NP WN DR + S + V
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVV 59
Query: 105 VKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160
VKD D +G V LN++ + + QW+ L ++R + A+W
Sbjct: 60 VKDDRDRHDPVLGSVSISLNDLIDA----TSVGQQWFPLSGNGQGRIR---ISALW 108
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-06
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF----- 254
+ LR + +A+DL DK + + + NQ+ T V T++P W++ L+F
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVEL 59
Query: 255 ------VAAEPFEEHLILTVEDRVAPNKDEVLGKCMI-PLQYVDKRLDHKPVNTRWYNLE 307
+A P +++ + D+ + KDE LG+ + PL +D D P +W+ +
Sbjct: 60 YGSPEEIAQNP--PLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPK-LQWFPIY 116
Query: 308 KHIVVEGE 315
K GE
Sbjct: 117 KGGQSAGE 124
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-06
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-GNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V+VI A++L D+ + +VK L G + +T+ +T+NP+WNE
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT-IKKTLNPVWNESFEVPVPSRV 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
L + V D KD++LG I L ++
Sbjct: 60 RAVLKVEVYDWDRGGKDDLLGSAYIDLSDLE 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 50 LPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTV---- 105
L KD GS D Y K G TR E +NP WN+ + + +VL V V
Sbjct: 15 LRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNS 73
Query: 106 ---KDKDFVKDDFMGRVLFDLN--EIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLA 158
+ D +G+V L+ E + PL + G K GEL A
Sbjct: 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPL-----LSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQA---LRTRVSASRTINPMWNEDLMFVA 256
L +I A+ L+ D + YVK L G LRT+ + +T NP +NE L +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTK-TVHKTRNPEFNETLTYYG 75
Query: 257 AEPFE---EHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
+ + L L V EDR ++ LG+ IPL K+L KP T+ +N+
Sbjct: 76 ITEEDIQRKTLRLLVLDEDRF---GNDFLGETRIPL----KKL--KPNQTKQFNI 121
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
G L++ ++ A GL D G +D +CV + ++T TI + P+WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 422 DPCTVITIGVFD 433
D V+ + V+D
Sbjct: 58 DIHDVLEVTVYD 69
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSA-SRTINPMWNEDLMFVAAEPFE 261
RV V+ A++LQP D + Y+K +LG + + R + T+NP++ + A P
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPL 287
L ++V D D+++G+ +I L
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP 423
+ + ++ AQGL+ KD GT+D Y + G+ RT+TI + P WNE++ +E +
Sbjct: 3 ISITVVCAQGLI---AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 424 CTVITIGVFD 433
I + V+D
Sbjct: 60 SDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVF 421
L++ I A+ L P D YC Q+ V RT+T+ S P + E + +E+
Sbjct: 1 SLKIKIGEAKNLPP--RSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP 58
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV 481
++ ++D D RDS IGKV I+ L +PL + +
Sbjct: 59 RTFRHLSFYIYDR------DVLR--RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS- 109
Query: 482 KKMGEIHLAVRF 493
+ G++HL +R
Sbjct: 110 EVQGKVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 204 VNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTI----NPMWNEDLMFVAAEP 259
+ ++ A++L+ + YV L + + R++ +RTI NP W+E+ F P
Sbjct: 5 IRIVRAENLKADSSNGLSDPYV--TLVDTNGKRRIAKTRTIYDTLNPRWDEE--FELEVP 60
Query: 260 FEEHLIL--TVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR--WYNLEK------H 309
E L + TV DR K ++ G+ + L D + R W +L+
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKL---DPKRFGDDGLPREIWLDLDTQGRLLLR 117
Query: 310 IVVEGEKK 317
+ +EGE+
Sbjct: 118 VSMEGERD 125
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 191 SKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTIN 245
S YL P L + +I+A++L+ D F + YVK L + R T V + T+N
Sbjct: 6 SLCYL-PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLN 63
Query: 246 PMWNEDLMF-VAAEPFEE-HLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDH----- 296
P +NE L+F V E + LI+ V DRV N E++G C + + +H
Sbjct: 64 PTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHN--ELIGVCRVGPNADGQGREHWNEML 121
Query: 297 ----KPVNTRWYNL 306
KP+ +W+ L
Sbjct: 122 ANPRKPI-AQWHQL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF----SKDRIQ 97
VRV++A+ L G+ DP V+V++G K T + P +N+ F F S D +
Sbjct: 8 VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 98 SSVLEVTVKDKD-FVKDDFMGRVLFDL 123
+++++V D D +G D+
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDV 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 40 LYVRVVKAKDLP-PKDVTGS-CDPYVEVKM------GNYKGTTRHFEKKT-NPEWNQVFA 90
L ++++ + LP PK GS DPYVEV++ + K T+ + NP WN+ F
Sbjct: 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63
Query: 91 FSKDRIQSSVLEVTVKDKDFVKDDFMG 117
F + + L V D+D DDF+G
Sbjct: 64 FDVTVPELAFLRFVVYDEDSGDDDFLG 90
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 28/145 (19%)
Query: 201 YLRVNVIEAQDLQPTDKGR-----FPEV-----YVKAQLGNQALRTRVSASRTINPMWNE 250
L++ + EA DL+PTD YV + + + + +T +P+WNE
Sbjct: 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64
Query: 251 DLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHI 310
+ F +L LTV A D+ + C I + + +R W +LE
Sbjct: 65 E--FTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGS--FDLWVDLEPQ- 119
Query: 311 VVEGEKKKDTKFASRIHMRICLEGG 335
++H++I L+G
Sbjct: 120 -------------GKLHVKIELKGS 131
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L +++ E ++L D+G + YVK + G + + + + +NP+W+E + E
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFT-LPIEDVT 60
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPL 287
+ L + V D D+ +G + L
Sbjct: 61 QPLYIKVFDYDRGLTDDFMGSAFVDL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 368 ILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVI 427
+ +A+GL +D G D Y + K + VR+ D+ +P+++ Q + P + I
Sbjct: 9 VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65
Query: 428 TIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEI 487
I V+++ L D +G+ LS D + P L G GE+
Sbjct: 66 KIQVWNSNLL---------CDEFLGQA--TLSADPNDSQTLRTLP---LRKRGRDAAGEV 111
Query: 488 --HLAVRFTCS 496
++V+ T S
Sbjct: 112 PGTISVKVTSS 122
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 202 LRVNVIEAQDLQPTDK-GRFPEVYVKAQLGNQA--LRTRVSASRTINPMWNEDLMFVAAE 258
L V + A+ L+ +D G + YV + N+ RT+V T NP+WNE +
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKV-KKDTSNPVWNETKYILVNS 62
Query: 259 PFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
E L LTV D KD+++G L
Sbjct: 63 -LTEPLNLTVYDFNDKRKDKLIGTAEFDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRTINPMWNEDLMFVAA 257
L V +I +L D + + +VK L G ++ +T+NP +NE+ +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 258 EP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH-----KPVN---TRWYNL 306
++ L +TV D+ ++ +G + + +RL H K + W+ L
Sbjct: 75 HSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQAL-RTRVSASRTINPMWNEDLMFVAAEPF 260
LR+++ +A DL+ + + YV+ + RT ++ T+NP+W+E +++V
Sbjct: 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDE-VLYVPVTSP 60
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQ-YVDKRLDHKPVNTRWYNLEKHIVVEGEKKKD 319
+ + L V D KD LG I + + K D K V Y+ E+ + K
Sbjct: 61 NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVE---YDDEEERLKRLLSLKG 117
Query: 320 TK 321
K
Sbjct: 118 VK 119
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|219008 pfam06398, Pex24p, Integral peroxisomal membrane peroxin | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 28/173 (16%)
Query: 581 ICNWKNP-IT-TVLIHILFIILVLYPELILPTVFLYLFLIGVWYYRWRPRHPPHMDTRLS 638
I W NP T + L+ FI LV Y L+ + LF I V Y WR H S
Sbjct: 35 ILTWTNPDYTLSFLLVYTFICLVPYLLLVSLPLGPLLFGIMVPGYLWR-----HSPLPRS 89
Query: 639 HADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVV---------GDLATQG 689
S+ + E T + +IV LR + ++ ++ +
Sbjct: 90 SLISSDLNPTPAEGPTLDEAESMEIVLN----LRDLQNKMTLLLSPIDFLEKFLYPFFKD 145
Query: 690 ERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLR-HPRFR 741
E L +LL L + I + L + P++++ L+ G ++L HP +
Sbjct: 146 EDLSTLLF------LTLLLTPIYI-FLTLPLIPWRLILLILGAFLLTYHPSWS 191
|
Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p. Length = 360 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 40 LYVRVVKAKDL-PPKDVTGSCDPYVEVKMGNYK--GTTRHFEKKTNPEWNQVFAFSKDRI 96
L V + A+ L + G+ DPYV + N + T+ + +NP WN+ +
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYI----L 59
Query: 97 QSS---VLEVTVKDK-DFVKDDFMGRVLFDLNEI 126
+S L +TV D D KD +G FDL+ +
Sbjct: 60 VNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSL 93
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 197 PKLWYLRVNVIEAQDLQ-----PTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNED 251
P+ + +RV VIEA+ L P VK ++G Q T V T P +NE
Sbjct: 1 PQDFQVRVRVIEARQLVGGNIDP---------VVKVEVGGQKKYTSVKKG-TNCPFYNEY 50
Query: 252 LMF----VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
F E F++ + ++V D + D ++G + + V + DH
Sbjct: 51 FFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH 99
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVF 89
+ + KA DL + G DPYV V + KG T NP W++V
Sbjct: 5 LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVL 53
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAF-SKDRIQS 98
L V V++A L D S D YV+V G + T NP WN F F S +
Sbjct: 30 LTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPG 88
Query: 99 SVLEVTVKDKD-FVKDDFMGR 118
L V D+D DD +G
Sbjct: 89 GKLRFEVWDRDNGWDDDLLGT 109
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTR--VSASRTINPMWNEDLMF-VA 256
+ VN+I+A++L+ D + YVK L ++ + + V RT+NP++NE +F +
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP 76
Query: 257 AEPFEE-HLILTVEDRVAPNKDEVLGKCMIP 286
E E LI+TV D+ ++++++GK +
Sbjct: 77 LERLRETTLIITVMDKDRLSRNDLIGKIYLG 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVL 101
VV K+LP G D +V K TR E + NP WN+ F + L
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESL 59
Query: 102 EVTVKD 107
E+ VKD
Sbjct: 60 EIVVKD 65
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 23/136 (16%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD 422
L+L +L A L P+K YCV + K RT+ P P W+E++ VFD
Sbjct: 6 LQLNVLEAHKL-PVKH-----VPHPYCVISLNEVKVARTKVREG-PNPVWSEEF---VFD 55
Query: 423 --PCTV--ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478
P V TI + + KA ++DS I +V ++LS L+ + YPL P
Sbjct: 56 DLPPDVNSFTISLSN--------KAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASP 107
Query: 479 NGVKKMGEIHLAVRFT 494
+ G + + R++
Sbjct: 108 LKGGEWGSLRIRARYS 123
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 31/123 (25%), Positives = 42/123 (34%), Gaps = 23/123 (18%)
Query: 202 LRVNVIEAQDLQPTDKGR---FPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE 258
L V V+E +DL G F V + RT+V +T NP ++E F
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVK-KKTNNPRFDEAFYFELTI 59
Query: 259 PFEEHLILT-VEDRVAPN--------------KDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
F VE+ D+ LG+ IPLQ L + W
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQ----GLQQAGSHQAW 115
Query: 304 YNL 306
Y L
Sbjct: 116 YFL 118
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 36/220 (16%)
Query: 40 LYVRVVKAKDLPPKD--VTGSCDPYVEVKM-GNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
+ V++ A+ L D + G+ DPY+ V G TR + NP WN+ F +
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETF-YILLNS 496
Query: 97 QSSVLEVTVKDK-DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
+ L +++ D F D +G DL + + + L E + K G L
Sbjct: 497 FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELY------EFLRNTKNVGRL 550
Query: 156 MLAVWMGTQADEAFPEAWHSDAAT----VTGIEGLANIRSKVYLSPKLWYLRVNVIEAQD 211
+ + +E L + + + L+V + E +
Sbjct: 551 ------------TYDLRFFPVIEDKKELKGSVEPLEDSNTGI--------LKVTLREVKA 590
Query: 212 LQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNED 251
L + + + + + T +P WN
Sbjct: 591 LD-ELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQ 629
|
Length = 1227 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTW---E 419
L + ++ AQ L+P D + + A+ G + +RTR + P WNE+ + E
Sbjct: 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE 58
Query: 420 VFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462
F+ ++++ D+ G +D +G+ I L+ +E
Sbjct: 59 PFEDHLILSVE----------DRVGPNKDEPLGRAVIPLNDIE 91
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 37 MQYLYVRVVKAK-DLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR 95
M L V V KAK D P + YV +K+ N K TT + + P W Q F F +R
Sbjct: 1 MSLLCVLVKKAKLDGAP----DKFNTYVTLKVQNVKSTTIAV-RGSQPCWEQDFMFEINR 55
Query: 96 IQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127
+ L + + +K + D +G V L+ I
Sbjct: 56 LDLG-LVIELWNKGLIWDTLVGTVWIPLSTIR 86
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII--DSPTPKWNEQYTWE 419
G LE+ +++A+GL + D G D Y + + + R + D P+WNE++ +
Sbjct: 1 GTLEVLLISAKGL---QDTDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFT 56
Query: 420 VFDP 423
V P
Sbjct: 57 VEYP 60
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
YL + + ++L +D+ + + +VK L +++ +T+NP+WNE+
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK---PVNTRW-----------YNL 306
++ L + V D + K+++LG I L ++ P++ + +N
Sbjct: 1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160
Query: 307 E-KHIVVEGEK-KKDTKFASRIHMRI 330
K+ + K A ++ +
Sbjct: 1161 RSKYALNVSRKEGILGDIAKKVGTGL 1186
|
Length = 1227 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 380 KDGRGTTDAYCVAKYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438
KD G++D YC+ K + + RT T+ + P W E+YT + ++ V D L
Sbjct: 15 KDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTL- 73
Query: 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492
+RD IGKV + + + L + GEIHL +
Sbjct: 74 -------SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFS--KDRI 96
L +R+++AK+LP K G+ DPY V + + T+ EK NP W + F F +
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEKL-NPFWGEEFVFDDPPPDV 57
Query: 97 QSSVLEVTVKDKD-FVKDDFMGRVLFD 122
L KDK +D +G+V
Sbjct: 58 TFFTLSFYNKDKRSKDRDIVIGKVALS 84
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 352 TAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPK 411
A+ S IG L + I+ + L P + G +D YC G + +T+ + D+ PK
Sbjct: 5 LARSQRASGIGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPK 61
Query: 412 WNEQYTWEVFD-PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465
WN + V D V+ I VFD + D +G+ IR++ + +
Sbjct: 62 WNSSMQFFVKDLEQDVLCITVFDRDFF--------SPDDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMF-VAA 257
L V +I+A++LQP D + Y K +L + ++++ +T+NP ++E +F V
Sbjct: 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIH-KKTLNPEFDESFVFEVPP 76
Query: 258 EPFEEHLILTVE----DRVAPNKDEVLGKCMIPLQYVD 291
+ + T+E D ++DE +G +PL VD
Sbjct: 77 QELPKR---TLEVLLYDFDQFSRDECIGVVELPLAEVD 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.002
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 202 LRVNVIEAQDLQPTDKGRF---PEVYVKAQLGNQALRTRVSASR----TINPMWNEDLMF 254
L V VI+A++L +D+ + +V VK L +Q + + ++ INP+WNE +MF
Sbjct: 17 LLVVVIKAKNLH-SDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF 75
Query: 255 ------VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
+AA E L V ++ +P + LG+C + L H
Sbjct: 76 ELPSELLAASSVE----LEVLNQDSPGQSLPLGRCSLGLHTSGTERQH 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 45 VKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTRHF-----EKKTNPEWNQVFAF-----S 92
+ ++L KDV DP+V V + G + NP++ F
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 93 KDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEI 126
+++ V +V K KD DF+G L EI
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 31/155 (20%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 344 HYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGR----GTTDAYCVAKYGQKWV 399
+ D+ ++IGV+E+ I +A+GL K GT D Y + + +
Sbjct: 418 SLTIDISQIMAGDSGTAIGVVEVKIKSAEGL-----KKSDSTINGTVDPYITVTFSDRVI 472
Query: 400 -RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRL 458
+TR ++ P WNE + + + + ++ D D +G ++ L
Sbjct: 473 GKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLY--------DFNSFKSDKVVGSTQLDL 524
Query: 459 STLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493
+ L + V + L + K +G + +RF
Sbjct: 525 ALLHQNPVKKN---ELYEFLRNTKNVGRLTYDLRF 556
|
Length = 1227 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 60 DPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRI----QSSVLEVTVKDKDFVKDD 114
DPY V + + TR E NP WN+ F I +S +E TVKD D V
Sbjct: 59 DPYATVDLAGARVARTRVIENSENPVWNESF-----HIYCAHYASHVEFTVKDNDVVGAQ 113
Query: 115 FMGRVLFDLNEIPKRVPPDSPLAPQ----WYRLEDRKGD 149
+GR +P + L+ + W + D G
Sbjct: 114 LIGRA---------YIPVEDLLSGEPVEGWLPILDSNGK 143
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 40 LYVRVVKAKDLPP-KDVTGS---CDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFS-KD 94
+++ + DLPP K++T + DP+V + G T NP +N+ AF
Sbjct: 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62
Query: 95 RIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSP 135
++ ++ V DKD F +D++ + E+ P P
Sbjct: 63 HEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 192 KVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL-------GNQALRTRVSASRTI 244
K Y LRV ++ A++L P D + +VK +L +T+V +T+
Sbjct: 8 KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVK-KKTL 66
Query: 245 NPMWNEDLMF-VAAEPFEEH---LILTVEDRVAPNKDEVLGKCMIPLQ 288
P+++E F V E L+ TV+D ++ G+ +PL
Sbjct: 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLN 114
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.004
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY-GQKWVRTRTIIDSPTPKWNEQYTWEVFD 422
L + +++A+ L D G +D + G+K +T+TI + P WNE + V
Sbjct: 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV-- 55
Query: 423 PC---TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
P V+ + V+D D GG D +G I LS LE + + P L
Sbjct: 56 PSRVRAVLKVEVYD------WD-RGGKDDL-LGSAYIDLSDLEPEETTELTLP---LDGQ 104
Query: 480 GVKKMGEIHL 489
G K+G + L
Sbjct: 105 GGGKLGAVFL 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 763 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.94 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.92 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.89 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.88 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.88 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.87 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.85 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.85 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.84 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.84 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.83 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.82 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.82 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.81 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.8 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.79 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.79 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.79 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.79 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.78 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.78 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.78 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.78 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.78 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.77 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.77 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.77 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.77 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.77 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.77 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.77 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.76 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.76 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.76 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.76 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.76 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.75 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.75 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.75 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.74 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.74 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.73 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.73 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.73 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.73 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.73 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.73 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.73 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.73 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.73 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.73 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.73 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.73 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.73 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.73 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.73 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.73 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.72 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.72 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.72 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.72 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.72 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.72 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.72 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.72 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.72 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.71 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.71 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.71 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.71 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.71 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.71 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.7 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.7 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.7 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.7 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.7 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.7 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.7 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.7 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.7 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.69 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.69 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.69 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.69 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.69 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.69 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.68 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.68 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.68 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.68 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.68 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.68 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.68 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.68 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.67 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.67 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.67 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.67 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.66 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.66 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.66 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.66 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.66 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.66 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.66 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.66 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.66 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.66 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.65 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.65 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.65 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.65 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.64 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.64 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.64 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.64 | |
| PLN03008 | 868 | Phospholipase D delta | 99.63 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.63 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.63 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.63 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.63 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.63 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.63 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.63 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.62 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.62 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.62 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.61 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.61 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.61 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.61 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.61 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.61 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.61 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.61 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.61 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.61 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.6 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.6 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.6 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.6 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.59 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.59 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.59 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.59 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.59 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.59 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.59 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.59 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.58 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.58 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.58 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.58 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.57 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.57 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.57 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.57 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.56 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.56 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.56 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.55 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.55 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.55 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.54 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.54 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.54 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.53 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.53 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.52 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.52 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.52 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.48 | |
| PLN03008 | 868 | Phospholipase D delta | 99.48 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.47 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.45 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.42 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.42 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.4 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.39 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.38 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.36 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.36 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.35 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.32 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.29 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.23 | |
| PLN02270 | 808 | phospholipase D alpha | 99.21 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.2 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.15 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.15 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.13 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.07 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.05 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.03 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.01 | |
| PLN02270 | 808 | phospholipase D alpha | 98.99 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.98 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.96 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.96 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.93 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.89 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.85 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 98.84 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.83 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.83 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.82 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.82 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.8 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.78 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.74 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.7 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.69 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.65 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.61 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.61 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.53 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.53 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.51 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.44 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.34 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.34 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.88 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.77 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.67 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.59 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.39 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.35 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.26 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.05 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.8 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.66 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.96 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.89 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.59 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.58 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.5 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.46 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.25 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.88 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.66 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.27 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.27 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.27 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 94.07 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.85 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.72 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.61 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 92.56 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.25 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.66 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.58 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 91.47 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.17 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 90.43 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 87.17 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.78 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 86.62 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 86.32 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 85.54 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 85.31 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 84.3 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 83.84 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 82.72 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 81.81 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=329.47 Aligned_cols=156 Identities=79% Similarity=1.402 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004297 608 LPTVFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLAT 687 (763)
Q Consensus 608 ~p~~~l~~~~~~~~~y~~~~~~~~~~~~~~s~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~ 687 (763)
+|++++++|++++|||+.|++.|+|+|.++|+++.+++||+|||+|.+|++++++.+++||+++++++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcCCCCCCchhhhhhcCCCCccCCC
Q 004297 688 QGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 763 (763)
Q Consensus 688 ~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r~i~l~~g~~~~~~p~~r~~~p~~~~~~~~r~ps~~~~~~ 763 (763)
++||++|+|+|+||++|.+++++|+++++++|++|+|+++++||+|++|||+||.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=261.12 Aligned_cols=399 Identities=19% Similarity=0.226 Sum_probs=299.0
Q ss_pred ccCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCC
Q 004297 33 LVEQMQYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (763)
Q Consensus 33 ~~~~~~~L~v~v~~a~~L~~~~--~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~ 109 (763)
.....|+|.|+|.+|++|...+ ..+..|||+++.+.+ ...+|++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 3567899999999999999887 578999999999877 567999999999999999999999864 688999999988
Q ss_pred CC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCCCCCCcccccccccccccccccc
Q 004297 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLAN 188 (763)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 188 (763)
.. +|+.+|++.++|+.|..+.. ...+-+.+.. +....|+|...+.|.+......... .+..+ .
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~----~~ne~~e~~~--~~k~vGrL~yDl~ffp~~e~k~~~~-~s~e~-------~-- 573 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPV----KKNELYEFLR--NTKNVGRLTYDLRFFPVIEDKKELK-GSVEP-------L-- 573 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccc----cccceeeeec--cCccceEEEEeeeeecccCCccccc-cccCC-------c--
Confidence 87 99999999999999987642 2233444443 3345799999988876433211100 00000 0
Q ss_pred ccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCccccceEEEEeeCCCCCeEEEE
Q 004297 189 IRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ-ALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILT 267 (763)
Q Consensus 189 ~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~-~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~ 267 (763)
.....|++.+++.++++|..... .....++++++..+ .+.|+.++. +.+|.||+++...+.+.....+.+.
T Consensus 574 ------ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 574 ------EDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ------ccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 01124789999999999976532 22233488888765 455577766 9999999999999988888899999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCC
Q 004297 268 VEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSS 347 (763)
Q Consensus 268 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~ 347 (763)
++|.. ..+.||+...+|.++..+ ......||++..+ +|+|.++....+.+...+.
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~-------------kg~I~~t~~W~Pi~~~~~~------ 700 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP-------------KGRIFITNYWKPIYNAGGS------ 700 (1227)
T ss_pred ecccc---cCceeccccccchHhhhc---cccceEEEEcCCC-------------cceEEEEeccceeeccccc------
Confidence 98864 567899888888887643 4457789999876 7899888866544322111
Q ss_pred CCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcE
Q 004297 348 DLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTV 426 (763)
Q Consensus 348 d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~ 426 (763)
+....+..++|.++|.|..|.+|... ...+++|||+++.+++. .+||.....++||.||+....++..+.+.
T Consensus 701 ----~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 701 ----SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred ----cceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 11122357789999999999999854 56789999999999775 68999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccC----CCeE---eeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET----DRVY---THSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 427 l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~----~~~~---~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+.++++|....+ .|..||.+.|+++++.. +... ..--+.......|.+..|.+.+..+|-+.
T Consensus 774 ~~l~~~~~~~sg--------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 774 LTLECMDYEESG--------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred Eeeeeecchhcc--------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999999876 89999999999999854 1111 00011111112234456889888888554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=257.50 Aligned_cols=224 Identities=32% Similarity=0.494 Sum_probs=190.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEe--cCCCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSK--DRIQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~ 100 (763)
+++...+++-+...|.|+|++|++|+..+..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+ .++....
T Consensus 155 ~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~ 234 (421)
T KOG1028|consen 155 NLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRV 234 (421)
T ss_pred eEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCE
Confidence 55555555567789999999999999999778899999999987 468999999999999999999996 3467899
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEEEEEEcccCCCCCCccccccc
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAVWMGTQADEAFPEAWHSDA 177 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~ 177 (763)
|.+.|||.|++ +++++|++.++|..+..... ...|.+|.... .....|+|.+++.|.+
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p-------------- 295 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYLP-------------- 295 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEeec--------------
Confidence 99999999999 99999999999998886642 56799998864 1122389999998874
Q ss_pred cccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCccccceE
Q 004297 178 ATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDL 252 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f 252 (763)
..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+|||+|
T Consensus 296 --------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf 354 (421)
T KOG1028|consen 296 --------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETF 354 (421)
T ss_pred --------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccE
Confidence 2357999999999999999999999999999853 4577888776 9999999999
Q ss_pred EEEeeCC--CCCeEEEEEEEccCCCCCceeEEEEEeccc
Q 004297 253 MFVAAEP--FEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289 (763)
Q Consensus 253 ~f~~~~~--~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 289 (763)
.|.+... ....+.|+|||++..+++++||+|.+....
T Consensus 355 ~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 355 VFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9988633 344799999999999999999999888764
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=241.29 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=179.3
Q ss_pred ceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCccccceEEEEeeC--CCCCeEEEEEEEcc
Q 004297 198 KLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAE--PFEEHLILTVEDRV 272 (763)
Q Consensus 198 ~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~L~i~V~d~d 272 (763)
+...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||.|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3447999999999999999767899999999984 6789999887 9999999999999643 34668999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcc
Q 004297 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352 (763)
Q Consensus 273 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~ 352 (763)
.++++++||++.++|..+... .....|.++........ ...|+|.+.+++.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~~------~~~gel~~sL~Y~------------------- 294 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDSE------ELAGELLLSLCYL------------------- 294 (421)
T ss_pred CcccccEEEEEEecCcccccc----ccceeeeccccccCCcc------cccceEEEEEEee-------------------
Confidence 999999999999998877532 22567999987532211 1228999999873
Q ss_pred hhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeCC---C
Q 004297 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---C 424 (763)
Q Consensus 353 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~ 424 (763)
+..|.|+|.|++|++|..+ +..+.+||||++.+ ++ .+.+|.++++++||+|||.|.|.|... .
T Consensus 295 ------p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 295 ------PTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred ------cCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 3348999999999999988 66689999999966 33 247899999999999999999988742 4
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
..|.|+|||+|.++ .+++||++.+....
T Consensus 366 ~~l~l~V~d~d~~~--------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 366 VSLELTVWDHDTLG--------SNDLIGRCILGSDS 393 (421)
T ss_pred eEEEEEEEEccccc--------ccceeeEEEecCCC
Confidence 58999999999987 78899999998875
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=240.99 Aligned_cols=411 Identities=22% Similarity=0.291 Sum_probs=286.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDF 115 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~ 115 (763)
.|.+.+++.++++|.... .....-++++++.++ ...|+.++.+.+|.||+++...+.+.....+.+.++|.. ..+.
T Consensus 578 ~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 578 TGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred cceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 588999999999996543 122233488999885 566789999999999999999998877888999999876 4678
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCCCCCCccccccccccccccccccccccccc
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYL 195 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (763)
+|+...+|.++.... .....||++..+ +|+|.++..+.+-... ....+..+.
T Consensus 655 i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~-------------------~~~~s~~~~ 706 (1227)
T COG5038 655 IATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIYNA-------------------GGSSSKTVY 706 (1227)
T ss_pred eccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceeecc-------------------ccccceeee
Confidence 899889988888653 346789998854 3789888755432110 001122334
Q ss_pred cCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC
Q 004297 196 SPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (763)
Q Consensus 196 ~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (763)
....|.++|.|..|.++......+++|||+++.+++ .++||-.... +.||.|++....++..+ .+++.+..+|++..
T Consensus 707 ~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~s 784 (1227)
T COG5038 707 DTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEES 784 (1227)
T ss_pred cCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchhc
Confidence 467889999999999999888889999999999987 5677777655 99999999999998775 45699999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCC----------C----------------ceeEEccccccc---------cc-----
Q 004297 275 NKDEVLGKCMIPLQYVDKRLDHKPV----------N----------------TRWYNLEKHIVV---------EG----- 314 (763)
Q Consensus 275 ~~d~~iG~~~i~l~~l~~~~~~~~~----------~----------------~~w~~L~~~~~~---------~~----- 314 (763)
+.|..+|++.++++++..+.++... . ...|+....... ..
T Consensus 785 gddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~ 864 (1227)
T COG5038 785 GDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKS 864 (1227)
T ss_pred cccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHh
Confidence 9999999999999998864321100 0 001110000000 00
Q ss_pred --------c-------c------------ccC--------------CceeceE--------------EEEEEEcc-Cccc
Q 004297 315 --------E-------K------------KKD--------------TKFASRI--------------HMRICLEG-GYHV 338 (763)
Q Consensus 315 --------~-------~------------~~~--------------~~~~G~l--------------~l~l~~~~-~~~~ 338 (763)
+ + ..+ ....|-+ .+.+.++. .++.
T Consensus 865 ~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~ 944 (1227)
T COG5038 865 EKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQ 944 (1227)
T ss_pred hhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCce
Confidence 0 0 000 0001111 22222221 1100
Q ss_pred cCCCc--------c-----------c------------CCC-------C-----------Ccc-----h--hh----hc-
Q 004297 339 LDEST--------H-----------Y------------SSD-------L-----------RPT-----A--KQ----LW- 357 (763)
Q Consensus 339 ~~~~~--------~-----------~------------~~d-------~-----------~~~-----~--~~----~~- 357 (763)
...+. . + .+| + +|. + .. .|
T Consensus 945 i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~t 1024 (1227)
T COG5038 945 IVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYT 1024 (1227)
T ss_pred eeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEe
Confidence 00000 0 0 000 0 000 0 00 00
Q ss_pred -----------cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeC-CC
Q 004297 358 -----------KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFD-PC 424 (763)
Q Consensus 358 -----------~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~-~~ 424 (763)
-.+.|.|.|.+..|.||++. |.+|.+||||++.++++ .++|+++++|+||+|||.+.++|.. ..
T Consensus 1025 Pv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~ 1101 (1227)
T COG5038 1025 PVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVK 1101 (1227)
T ss_pred ecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecccc
Confidence 13479999999999999987 67799999999999887 7999999999999999999999995 58
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+.++|.|+|||.-. +++.||++.|+|+.|..+..++...+|.++. .+ ...|.++....|
T Consensus 1102 D~~~i~v~Dwd~~~--------knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~ 1160 (1227)
T COG5038 1102 DVLTINVNDWDSGE--------KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNF 1160 (1227)
T ss_pred ceEEEEEeecccCC--------CccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceec
Confidence 89999999999754 8999999999999999999888888886533 11 234666654444
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-25 Score=248.48 Aligned_cols=287 Identities=20% Similarity=0.265 Sum_probs=185.1
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCEE--EeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA--LRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP 274 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~ 274 (763)
|....++|++++|.+|.+.|.+|++||||++.+|++. -++..+.+ |+||+|++.|++....+....+.++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 4555799999999999999999999999999999876 44555666 99999999999999999999999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEccccccccccc---------ccCCc-----eeceEEEEEEEccC----
Q 004297 275 NKDEVLGKCMIPLQY-VDKRLDHKPVNTRWYNLEKHIVVEGEK---------KKDTK-----FASRIHMRICLEGG---- 335 (763)
Q Consensus 275 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~~~~~---------~~~~~-----~~G~l~l~l~~~~~---- 335 (763)
+.|+.||+..++|.+ ...+.+.++...+-|...+.....+.. .+... +.+.. ..+.+.|.
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~ 767 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIY 767 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhh
Confidence 999999999999986 333333444444444433322110000 00000 00000 01111110
Q ss_pred ---------------------------ccccCCCcc----cCCC---CCcchhhh------------------ccCCcce
Q 004297 336 ---------------------------YHVLDESTH----YSSD---LRPTAKQL------------------WKSSIGV 363 (763)
Q Consensus 336 ---------------------------~~~~~~~~~----~~~d---~~~~~~~~------------------~~~~~g~ 363 (763)
.+...+... .+.+ .....-+. ..+....
T Consensus 768 d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~ 847 (1105)
T KOG1326|consen 768 DEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYE 847 (1105)
T ss_pred cccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhee
Confidence 000000000 0000 00000011 1244568
Q ss_pred EEEEEEEccCCCCCccC-CCCCCCCcEEEEEEC-C--EEEeeeeecCCC----CCccccEEEEEee--------------
Q 004297 364 LELGILNAQGLMPMKTK-DGRGTTDAYCVAKYG-Q--KWVRTRTIIDSP----TPKWNEQYTWEVF-------------- 421 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~-~~~g~~Dpyv~v~~~-~--~~~~T~~~~~t~----~P~wne~~~~~v~-------------- 421 (763)
++|.|-.-.+....+.. -+...+|.||+-.+- . ++++|.+.++++ |-+|.-.|.|.-.
T Consensus 848 lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ 927 (1105)
T KOG1326|consen 848 LRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYS 927 (1105)
T ss_pred EEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhc
Confidence 88888887777664331 123459999999663 3 358888888765 6667544444211
Q ss_pred ---C-----CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc----------------------CCCeEeeeE
Q 004297 422 ---D-----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE----------------------TDRVYTHSY 471 (763)
Q Consensus 422 ---~-----~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~----------------------~~~~~~~~~ 471 (763)
+ ....|.|+|||.|.++ +|++||..+++|+++. ..+...+||
T Consensus 928 ws~dete~k~p~rl~iqiWD~d~fs--------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWw 999 (1105)
T KOG1326|consen 928 WSLDETEFKIPARLIIQIWDNDKFS--------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWW 999 (1105)
T ss_pred cccccccccCchheEEEecccCccC--------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccc
Confidence 1 1236999999999998 9999999999999972 234567999
Q ss_pred eeeeeCCCCcccceEEEEEEEE
Q 004297 472 PLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 472 ~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
|+.........-+|++++++.+
T Consensus 1000 P~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1000 PCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eeeecCCCcceecceeeeehhh
Confidence 9988643333358999998876
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=215.18 Aligned_cols=248 Identities=20% Similarity=0.346 Sum_probs=195.1
Q ss_pred EEEEEEEEccccCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCce
Q 004297 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEV 279 (763)
Q Consensus 201 ~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~ 279 (763)
.|.|.|.||+||+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+... -..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 5899999999999999999999999999987 6799999987 99999999999999654 357999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccC
Q 004297 280 LGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKS 359 (763)
Q Consensus 280 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 359 (763)
||.+.|.=.+|.. .+....|+.|..-+ .+.+..|++++.+.+..... +
T Consensus 83 IGKvai~re~l~~----~~~~d~W~~L~~VD-------~dsEVQG~v~l~l~~~e~~~-------------~-------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHM----YPGKDTWFSLQPVD-------PDSEVQGKVHLELALTEAIQ-------------S-------- 130 (800)
T ss_pred cceeeeeHHHHhh----CCCCccceeccccC-------CChhhceeEEEEEEeccccC-------------C--------
Confidence 9999998887764 34688999998863 44578999999998744311 0
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE----EeeeeecCCCCCccccEEEEEeeCC------------
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRTRTIIDSPTPKWNEQYTWEVFDP------------ 423 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~----~~T~~~~~t~~P~wne~~~~~v~~~------------ 423 (763)
.-+...++.++.+.|. .+|.+||||++...+.+ .+|.++++|.+|.|+|.|.|.+...
T Consensus 131 --~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 --SGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred --CcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcc
Confidence 1222244446666553 23569999999887655 4999999999999999999988633
Q ss_pred ----CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc----cceEEEEEEEEee
Q 004297 424 ----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK----KMGEIHLAVRFTC 495 (763)
Q Consensus 424 ----~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l~~~~~~ 495 (763)
...|.+.+||+.... ..++|+|.+++++..+........||-|.....+... .-|.+++.+.++.
T Consensus 205 ~e~~~l~irv~lW~~~~~~-------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLV-------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cCCceeeEEEeeccchhhh-------hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 346889999955432 1689999999999998866677899999865322111 2478888888765
Q ss_pred c
Q 004297 496 S 496 (763)
Q Consensus 496 ~ 496 (763)
.
T Consensus 278 D 278 (800)
T KOG2059|consen 278 D 278 (800)
T ss_pred c
Confidence 4
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=179.68 Aligned_cols=125 Identities=70% Similarity=1.178 Sum_probs=106.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
.|+|+|++|+||+.+...|..|++||||++++|++++||+++.+++||+|||+|.|.+.++...|+|+|||++..+ . +
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~-~-~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH-W-K 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc-c-c
Confidence 4889999999933222337789999999999999999999999999999999999999988889999999998752 0 0
Q ss_pred CCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
....+|++||++.|+|+++..+....+||+|...++++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 01126899999999999999999999999999887777778899986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=182.40 Aligned_cols=149 Identities=69% Similarity=1.135 Sum_probs=127.9
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeE
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLG 281 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~iG 281 (763)
|+|+|++|++|+..+.+|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 78999999999999999999999999999999999998654699999999999998777789999999999888999999
Q ss_pred EEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCc
Q 004297 282 KCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP 351 (763)
Q Consensus 282 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~ 351 (763)
++.++|+++....+......+||+|......+. .++..+.+|+|++++++.+.+++.+++.++++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 999999998654333455789999998632111 223456789999999999999999999999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=174.91 Aligned_cols=118 Identities=23% Similarity=0.380 Sum_probs=103.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
|.|+|+|++|++|+.. + .|++||||++.+|++++||+++.+ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999998754 3 589999999999999999999876 79999999999999876778999999999986
Q ss_pred CCCCCCCCCccEEEEEecc-cccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 441 DKAGGARDSRIGKVRIRLS-TLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||.+.|++. .+..|+....||+|... +|.++.|+|+|.++|
T Consensus 76 ------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 58888888999999753 344567999998864
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=207.57 Aligned_cols=250 Identities=22% Similarity=0.325 Sum_probs=195.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
..|.|+|.+|+||++.+..|.+||||.|.++. ...+|.++.+++.|.|.|.|+|.+.. .-..|.|-|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEecccccccccc
Confidence 36899999999999999999999999999998 57899999999999999999999875 35779999999993399999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEEEcccCCCCCCccccccccccccccccccccccccc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYL 195 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (763)
|.+.|.=++|.... ....||.|..-. ..+++|+|++++.+.....+
T Consensus 84 GKvai~re~l~~~~-----~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------------------------- 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYP-----GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------------------------- 130 (800)
T ss_pred ceeeeeHHHHhhCC-----CCccceeccccCCChhhceeEEEEEEeccccCC----------------------------
Confidence 99999988888663 367899999876 34689999999876532110
Q ss_pred cCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCE----EEeeecccCCCCCccccceEEEEeeCC------------
Q 004297 196 SPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQ----ALRTRVSASRTINPMWNEDLMFVAAEP------------ 259 (763)
Q Consensus 196 ~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~----~~kT~~~~~~t~nP~wne~f~f~~~~~------------ 259 (763)
.-+...+++++++.+... +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ----CcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcc
Confidence 024455566666666543 45999999998763 358999887 99999999999988654
Q ss_pred ---CCCeEEEEEEE-ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEc
Q 004297 260 ---FEEHLILTVED-RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333 (763)
Q Consensus 260 ---~~~~L~i~V~d-~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~ 333 (763)
....|++.+|+ .+....++|+|++.+++..+.. ......||-|...+ .+++...+.--|.+.+.+++.
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~--~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP--NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC--CcccCCCCCCccceeeeEEee
Confidence 23367888888 4555679999999999987752 23478899998863 233333445567788887763
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=172.70 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=101.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC------CCcEEEEEEEeCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD------PCTVITIGVFDNCHL 437 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~------~~~~l~i~V~d~~~~ 437 (763)
++|+|++|+||+++ +..|.+||||++.++++.++|+++++++||+|||.|.|.+.+ ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999987 566899999999999999999999999999999999999976 367899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEeccccc--CCCeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLE--TDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~--------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G--------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C--------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 6 7899999999999987 66777899999764433334579999876
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=166.50 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCC-CCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|.|+|++|++++..+ .|.+||||++++++++++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 68999999999988777 789999999999999999999865 89999999999999753 46799999999998 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 116 MGRVLFDLN-EIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 116 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
||++.+++. .+..+ ....+||+|....+....|+|+|++.|
T Consensus 80 iG~~~i~l~~~~~~g-----~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-----ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-----CCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999996 45544 236899999987777678999999865
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=168.94 Aligned_cols=121 Identities=74% Similarity=1.243 Sum_probs=108.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (763)
+|.|+|++|++|+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999877 6899999999999999999999999999999999987766789999999999878999999
Q ss_pred EEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+.++++++..+...+.....+||+|.+..+.+..|+|.+++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999998765444556789999998877678899999999973
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=204.95 Aligned_cols=164 Identities=22% Similarity=0.370 Sum_probs=147.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhcccCCchhhHHHHHHHHHHHHcCch--hHHHHHHHHHHHHhhcccc-CCCCCCCCC
Q 004297 558 GSHMWSMRRILSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPEL--ILPTVFLYLFLIGVWYYRW-RPRHPPHMD 634 (763)
Q Consensus 558 ~~n~~r~~~~~~~~~~~~~~l~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~~p~~~l~~~~~~~~~y~~-~~~~~~~~~ 634 (763)
++|+..||+++.|+..++.+++++.+||+|.+|+.+++++.+++|..|+ ++|.+|++++++|+|.... +.
T Consensus 486 ~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~------- 558 (683)
T PF04842_consen 486 DTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRL------- 558 (683)
T ss_pred ccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------
Confidence 6999999999999999999999999999999999999999999999998 6999999999999986554 22
Q ss_pred CCcCCCCCCCCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHH
Q 004297 635 TRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIA 714 (763)
Q Consensus 635 ~~~s~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~ 714 (763)
+..-++... +.+|+.+..|++.++|+.+.++++.|+.++.++.|+|+++.|..|++|..++++++++
T Consensus 559 -----------g~~~~~v~V--~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~ 625 (683)
T PF04842_consen 559 -----------GKSFGEVTV--RDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGL 625 (683)
T ss_pred -----------CCccceEEe--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 122233333 4567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhh-hccCCCcC
Q 004297 715 AIVLYVTPFQVVALLTGFY-VLRHPRFR 741 (763)
Q Consensus 715 ~~~l~~vP~r~i~l~~g~~-~~~~p~~r 741 (763)
|+++.++|+||++++..++ |+|+..+|
T Consensus 626 A~~LavvP~kyil~~v~l~~FTre~~~R 653 (683)
T PF04842_consen 626 AAVLAVVPFKYILLFVFLEVFTRESPFR 653 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999998888 89988888
|
|
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=172.23 Aligned_cols=118 Identities=27% Similarity=0.480 Sum_probs=100.3
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
..|.|+|.|++|.||... |..++|||||++++|+++.||+++++++||+|||.|+|.+.|++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 459999999999999876 6668999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 492 (763)
.||+||.++|+|..+.... ..+| |....+.|... |+|.++.+
T Consensus 80 -------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 80 -------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred -------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEeccc
Confidence 8999999999999987765 3444 54444444433 66655443
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=165.46 Aligned_cols=120 Identities=28% Similarity=0.388 Sum_probs=106.0
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
.|+|+|++|+||++. +..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999987 5568999999999987 578999999999999999999999887889999999999876
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.+++.++..+.....|++|.+.. +.+..|+|++.++|+|
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 7899999999999999888889999997533 2346799999998853
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=169.63 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=107.6
Q ss_pred ceEEEEEEEccCCCCCccC---------------------------CCCCCCCcEEEEEECCEE-EeeeeecCCCCCccc
Q 004297 362 GVLELGILNAQGLMPMKTK---------------------------DGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWN 413 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~---------------------------~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wn 413 (763)
|.|.|+|++|++|++||.. ...|++||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998621 246789999999999865 699999999999999
Q ss_pred cEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 414 EQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 414 e~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
|.|.|.+.++.+.|.|.|||++..+ +++||++.|+++++..+.....||+|.+...++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~---------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG---------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC---------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999888889999999998763 5799999999999998888899999987655555557899999988
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=161.20 Aligned_cols=119 Identities=28% Similarity=0.420 Sum_probs=102.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|.|.|++|+||++++. ..|.+||||++.++++ .++|+++++|+||.|||.|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6789999999998632 2578999999999876 58999999999999999999999876789999999999876
Q ss_pred CCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.++++++..+.....||+|......+. ..|+|+|+++|
T Consensus 76 ----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 88999999999999988888899999986544343 46999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=163.16 Aligned_cols=117 Identities=30% Similarity=0.550 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecC-----CCCceEEEEEEeCCCC-CC
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR-----IQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-----~~~~~l~i~V~d~~~~-~d 113 (763)
++|+|++|+||+..+..|.+||||++++++++++|++++++.||+|||+|.|.+.. +....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999988999999999999999999999999999999999999865 3567899999999988 79
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--ccceEEEEEE
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAV 159 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~ 159 (763)
++||++.++|.++.... .....+||+|....+. +..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEe
Confidence 99999999999987322 1235799999875542 4679999876
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=167.26 Aligned_cols=122 Identities=24% Similarity=0.373 Sum_probs=103.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGG 440 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~ 440 (763)
.|+|+|++|+||+++ +..|.+||||++.++++.++|+++.+ ++||+|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 378999999999987 55689999999999999999999977 69999999999999876 458999999998765
Q ss_pred CCCCCCCCCccEEEEEecccccCC----CeEeeeEeeeeeCC-----CCcccceEEEEEEEEee
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETD----RVYTHSYPLLVLYP-----NGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|+++..+ ....+||+|..... +..+.+|+|+|.+.|..
T Consensus 76 ------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 ------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred ------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998643 45689999976532 22345799999999853
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-19 Score=161.28 Aligned_cols=119 Identities=28% Similarity=0.470 Sum_probs=102.3
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~ 436 (763)
....|.|+|+|++|+||+++ +..|.+||||++.+++..++|+++++++||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46679999999999999987 5668999999999999999999999999999999999999875 5689999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccC-----CCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.+ +|++||++.+++.++.. ......|.++. + +..|+|+|++.|
T Consensus 88 ~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS--------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC--------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 76 78999999999999875 33445666652 2 346999998876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=159.61 Aligned_cols=116 Identities=26% Similarity=0.493 Sum_probs=100.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~ 439 (763)
|.|+|+|++|+||++. +..|++||||++.+++...+|+++.+ ++||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 55689999999999999999999865 79999999999999874 67899999998764
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.|++||++.+++.++..+....+||+|.. +| +..|+|+|++.|
T Consensus 76 -------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -------KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -------CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 47899999999999877766789999964 23 356999998865
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=157.52 Aligned_cols=119 Identities=25% Similarity=0.473 Sum_probs=101.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCC-cEEEEEEEeCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCHLHG 439 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~V~d~~~~~~ 439 (763)
..|+|.|++|+||++. +.+||||++.+++.. .+|++ .++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4799999999999863 478999999998854 68887 46899999999999876553 58999999998876
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|.++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 -------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998765434456799999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=155.95 Aligned_cols=113 Identities=25% Similarity=0.469 Sum_probs=101.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
+++|.|++|+||+++ +..|.+||||++.+++..++|+++.+++||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 478999999999987 5568899999999999999999999999999999999999876 789999999999875
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.++|.++..+.....||+|.. ..|+|++.+.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 -----KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred -----CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 78999999999999998888999999953 14999988766
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=156.12 Aligned_cols=118 Identities=29% Similarity=0.485 Sum_probs=105.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
+|+|+|++|++|+..+..+.+||||++++++ ..++|+++.++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999889999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
|.+.++++++..+.+ ...|++|.+..+.+..|+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999986643 56799998876656789999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=156.01 Aligned_cols=112 Identities=31% Similarity=0.413 Sum_probs=97.4
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-----
Q 004297 40 LYVRVVKAKD---LPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV----- 111 (763)
Q Consensus 40 L~v~v~~a~~---L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~----- 111 (763)
|+|+|++|++ |..+|..|.+||||++++++++.||++++++.||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 8999999999 88899999999999999999999999999999999999999999764 45899999999875
Q ss_pred --CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEE
Q 004297 112 --KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELML 157 (763)
Q Consensus 112 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l 157 (763)
+|++||++.++++.+..+. ....||+|.+.+ +.+..|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998653 357899999765 2234577754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=157.98 Aligned_cols=120 Identities=38% Similarity=0.502 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCC---CceEEEEEEeCCCC--CC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ---SSVLEVTVKDKDFV--KD 113 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~d~~~~--~d 113 (763)
.|+|+|++|++|+..+..+.+||||++.+++++++|+++.++.||.|||+|.|.+.+.. ...|.|+|||.+.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999988899999999999999999999999999999999999986432 46899999999876 79
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEEEc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVWMG 162 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~~~ 162 (763)
++||++.+++.++... .....+||+|..+. ..+.+|+|.+++++.
T Consensus 81 ~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999999832 23467999999764 234789999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=155.89 Aligned_cols=118 Identities=26% Similarity=0.462 Sum_probs=103.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
|.|+|+|++|+||+.+ +..+.+||||++.+++..++|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987 5567899999999999999999999999999999999999877789999999998765
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
++++||++.+++.++..+. .+||+|......+ +..|+|.++++|
T Consensus 75 -----~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 -----KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred -----CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998776 6899997543333 346999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-19 Score=159.78 Aligned_cols=95 Identities=40% Similarity=0.591 Sum_probs=89.5
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
+...|.|+|+|++|.+|..+|..+++||||++.+++++.||+++++++||+|||.|.|.+.++ ...|.++|||+|.+ +
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 346789999999999999999889999999999999999999999999999999999999985 68899999999999 9
Q ss_pred CeeeEEEEEEccccCCC
Q 004297 113 DDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~ 129 (763)
||+||.|+|+|..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 99999999999999865
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=157.97 Aligned_cols=121 Identities=32% Similarity=0.484 Sum_probs=102.1
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC----CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V~d~~~~~ 438 (763)
.|.|+|++|+||++. +..|.+||||++.++++.+||+++.++.||+|||.|.|.+.++ ...|.|.|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 478999999999987 5568899999999999999999999999999999999999864 357999999988752
Q ss_pred CCCCCCCCCCCccEEEEEeccccc-CCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
++|++||++.++++++. .+.....||+|......+ +.+|+|+|++.++
T Consensus 78 -------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 78 -------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred -------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 15789999999999997 566778999997643333 3579999988764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=157.59 Aligned_cols=124 Identities=30% Similarity=0.519 Sum_probs=105.2
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
...+|.|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||.|||+|.|.+.++....|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 356789999999999999999899999999999999999999999999999999999999877678899999999987 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
|++||++.+++.++............+|..+.. ...|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999998633222233445666642 235999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=156.68 Aligned_cols=120 Identities=20% Similarity=0.353 Sum_probs=102.2
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
|.|+|++|+||+. ..|.+||||++.+++ +.++|+++.+++||+|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5689999999985 347899999999974 578999999999999999999998766788999999999875
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+|++||++.+++.++..+.....||+|......+.+..|+|++++.|...
T Consensus 73 -----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 -----DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred -----CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 78999999999999988777789999975433334457999999998643
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=155.40 Aligned_cols=117 Identities=29% Similarity=0.451 Sum_probs=101.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|.|+|+|++|++|+..+..+.+||||++++++++.+|+++. ++.||.|||+|.|.+.....+.|.|+|||++..++++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 57999999999999999889999999999999999999885 57899999999999976556889999999987778999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
|++.+++.++..+. ...+|++|.... +..|+|.+++.|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEeeEEEEEEEC
Confidence 99999999987643 257899998643 457999998864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=157.27 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=102.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~~~~ 440 (763)
|.|+|.|++|+||++.+. ++.+.+||||++.+++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 689999999999998632 116889999999999999999999999999999999999997 4789999999999875
Q ss_pred CCCCCCCCCccEEEEEeccccc---CCCeEeeeEeeeeeCCC-CcccceEEEEEEEE
Q 004297 441 DKAGGARDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLYPN-GVKKMGEIHLAVRF 493 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~~ 493 (763)
+|++||++.|++.++. .......||+|...... .....|+|+|++.+
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999986 33446899999765322 12357999997753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=155.20 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=89.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVF 432 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~ 432 (763)
+.|.|.|++|+||+++ + .|.+||||++.+.+ ...||++++++.||+|||.|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 7899999999999987 5 58999999999853 46899999999999999999999732 3578999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
|++..+ ++++||++.|+|+++..+.....||+|
T Consensus 89 d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV--------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc--------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 789999999999999988878999997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=156.18 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=90.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE-eCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF-DNC 435 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~-d~~ 435 (763)
|.|.|.|++|+||++.+ +..|.+||||++.+ ++ .+.||+++++++||+|||.|.|.+......|.|.|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998753 23578999999988 33 268999999999999999999999866789999999 566
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
.++ ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~--------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD--------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC--------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 654 78899999999999988877899999965
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=154.64 Aligned_cols=109 Identities=31% Similarity=0.539 Sum_probs=94.5
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe---cCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK---DRI 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v---~~~ 96 (763)
..+++.|+ .+.|.|+|++|++|+..+ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .++
T Consensus 4 l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 4 VKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred EEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 46667777 468999999999999999 89999999999974 468999999999999999999986 344
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
....|.|+|||++.. ++++||++.++|.++.... ....||+|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 578899999999988 8999999999999998653 25789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=154.23 Aligned_cols=105 Identities=16% Similarity=0.267 Sum_probs=90.5
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
..|.|.|.|++|+||++.+ ...|.+||||++.+. ....||+++++++||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3489999999999998763 225789999999883 235799999999999999999999875 356899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||++..+ ++++||.+.|+|.++......+.||||.
T Consensus 91 ~d~~~~~--------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFG--------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCC--------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999876 8899999999999999888899999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-18 Score=149.06 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=85.8
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
+..|.|.|+|++|+||+ . + |.+||||++.+.. .+.+|+++++|+||+|||.|.|.|.. +...|.|.|
T Consensus 11 ~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 11 KQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred CcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 44589999999999998 2 2 4599999998853 46899999999999999999999874 467899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
||+|+++ ++++||++.+++.++.-+....+|..|
T Consensus 85 ~d~Drfs--------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS--------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC--------CCceEEEEEEccccccCCccccchhcC
Confidence 9999987 899999999999987555555677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=155.51 Aligned_cols=103 Identities=22% Similarity=0.359 Sum_probs=89.4
Q ss_pred cceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~-~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
.+.|.|+|++|+||+++ +. .|.+||||++.+. ....||+++++++||+|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 37999999999999987 54 3789999999883 234799999999999999999999874 256899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||++.++ ++++||.+.|+|.++..+.....||+|.
T Consensus 91 ~d~~~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG--------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC--------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999876 8899999999999998777778999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=150.05 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=90.3
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeeCCCCCCeeccEEEEEec--CCCCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~ 99 (763)
++...+.|....+.|+|+|++|++|+ . .|.+||||++++.+ .+++|++.++|+||+|||+|.|.+. ++...
T Consensus 2 ~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 2 KLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred eEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 34455555567789999999999998 3 36699999999974 4778999999999999999999984 45678
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|.|.|||+|++ ++++||++.+++.++..... ..+|-.|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~-----~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLG-----AAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCcc-----ccchhcC
Confidence 899999999999 99999999999998754432 4467543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=154.45 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=100.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
+|+|+|++|+||+++ +..+.+||||++.+++..++|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 488999999999987 5567899999999999999999999999999999999999875 578999999998876
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCC---CcccceEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN---GVKKMGEIHLAV 491 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~ 491 (763)
++++||++.++|.++..+.....||.|...... ..+..|.|++.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 -----KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -----CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999877667899999754322 123468888865
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=153.92 Aligned_cols=117 Identities=28% Similarity=0.508 Sum_probs=100.6
Q ss_pred ceEEEEEEEccCCCCCccCC---CCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKD---GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHL 437 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~---~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~ 437 (763)
|.|+|.|++|+||+.++... ..|.+||||++.+++..++|++++++.||.|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999864311 14689999999999999999999999999999999999986 478999999999864
Q ss_pred CCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.+++.++..+.....||+|.+ ...|+|+++++|
T Consensus 81 ---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~~~~~~~~ 121 (121)
T cd08391 81 ---------KDDFLGRLSIDLGSVEKKGFIDEWLPLED------VKSGRLHLKLEW 121 (121)
T ss_pred ---------CCCcEEEEEEEHHHhcccCccceEEECcC------CCCceEEEEEeC
Confidence 57899999999999988877899999964 246999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=149.60 Aligned_cols=102 Identities=29% Similarity=0.430 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|+.|.|+|++|++|...+ ..||||++++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++..+|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997544 5699999999999999999987 59999999999998754 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
|++.|+|.++..+. .++.++||+|.+.
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4567899999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-18 Score=151.80 Aligned_cols=117 Identities=29% Similarity=0.455 Sum_probs=99.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|.|.|++|+||+++ +..|.+||||++.++++. .||+++.+++||.|||.|.|.+.+....|.|+|||++..+
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 556899999999998764 7999999999999999999999877789999999999876
Q ss_pred CCCCCCCccEEEEEecccccCC-CeEeeeEeeeeeCCCCcccceEEEEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVLYPNGVKKMGEIHLAVR 492 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 492 (763)
+|++||++.+++.++..+ .....|++|......+. ..|+|++.++
T Consensus 75 ----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 ----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred ----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999988754 34689999976543333 4699998764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=155.52 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=100.6
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-------EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNC 435 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~ 435 (763)
.|+|+|++|+||+.. +..|.+||||++.+++. .++|+++.+++||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999976 55688999999998654 57999999999999999999998776778999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCe------EeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV------YTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
..+ +|++||++.+++.++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT--------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC--------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 876 78999999999999876543 35899998644334 346999999887
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=149.54 Aligned_cols=113 Identities=36% Similarity=0.588 Sum_probs=100.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
.|+|+|++|++|+..+..+.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. ++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999998889999999999999999999999999999999999999776678999999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
++.+++.++..+. ....|++|.+. .|+|++.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCC-----CcEEEEEEEe
Confidence 9999999988653 36789999864 3888887755
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=150.10 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=100.6
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
.+.++|+|++|+||... +..|.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 36899999999999876 567899999999999999999999999999999999999988888999999998875
Q ss_pred CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeC-CCCcccceEEEEEEEEe
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY-PNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~~~ 494 (763)
+|++||++.+++.++..+. .+||+|.... ....+..|+|.+++...
T Consensus 76 ------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 5789999999999865443 5789996322 12223569999887653
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=152.43 Aligned_cols=121 Identities=30% Similarity=0.456 Sum_probs=104.8
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004297 38 QYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~--~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (763)
|.|+|+|++|++|+..+. .+.+||||++.+++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999887 88999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC---CccceEEEEEEE
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVW 160 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~ 160 (763)
+||++.+++.++..... .....+||+|.+... ....|+|++++.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999875311 223579999997742 236899999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=150.71 Aligned_cols=112 Identities=23% Similarity=0.341 Sum_probs=96.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~ 439 (763)
|.|+|++|+||++. +..|.+||||++.++ +..+||+++.++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 78999999999976 556899999999985 3568999999999999999999998864 56799999999875
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.++++++..+.....||+|.. +..|++++++.+
T Consensus 77 -------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 77 -------MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred -------CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 57899999999999999999999999953 235888887765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-18 Score=151.19 Aligned_cols=113 Identities=25% Similarity=0.339 Sum_probs=96.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
.|.|.|++|+||+++ .+||||++.++++..+|+++++++||+|||.|.|.+.++ ...|.++|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~-------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~---- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN-------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA---- 69 (121)
T ss_pred CEEEEEEEecCCCcc-------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC----
Confidence 378999999999863 689999999999999999999999999999999998874 67899999999865
Q ss_pred CCCCCCCCccEEEEEecccccCCC-----eEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDR-----VYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
++++||++.++|+++..+. ...+||+|..... .+..|+|+|.+.|
T Consensus 70 -----~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 70 -----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred -----cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEe
Confidence 5789999999999986532 3568999976443 3456999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=151.38 Aligned_cols=116 Identities=20% Similarity=0.394 Sum_probs=100.1
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CEEE
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWV 399 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~~~ 399 (763)
.|+|++++.+. +..|.|.|+|++|+||+++ +..|.+||||++.++ ....
T Consensus 2 ~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~ 53 (124)
T cd08387 2 RGELHFSLEYD-------------------------KDMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTK 53 (124)
T ss_pred CCEEEEEEEEC-------------------------CCCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcE
Confidence 58888888763 3348999999999999987 556889999999883 3468
Q ss_pred eeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 400 RTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 400 ~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
+|++++++.||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+...+.||+|+
T Consensus 54 kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~--------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 54 QSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS--------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC--------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999998753 568999999998876 7899999999999998777889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=151.75 Aligned_cols=115 Identities=26% Similarity=0.289 Sum_probs=96.5
Q ss_pred cCceeeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC
Q 004297 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI 96 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~ 96 (763)
|...+++.|+ .+.|.|+|++|+||+..+ ..|.+||||++++.+ .+.||++++++.||+|||+|.|.+. +
T Consensus 18 G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l 92 (146)
T cd04028 18 GDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-P 92 (146)
T ss_pred ceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-C
Confidence 3446666663 479999999999998864 568899999999954 2679999999999999999999998 5
Q ss_pred CCceEEEEEE-eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 97 QSSVLEVTVK-DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 97 ~~~~l~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
....|.|+|| |.+.. ++++||++.|+|.++..+. ....||+|.+..
T Consensus 93 ~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 93 TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 7889999999 56766 8999999999999986543 257899999764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=150.78 Aligned_cols=116 Identities=22% Similarity=0.375 Sum_probs=97.0
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--C
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--I 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 96 (763)
.++++.|+. ..+.|.|+|++|+||+..+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+.. +
T Consensus 4 i~~sl~Y~~--~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l 81 (128)
T cd08392 4 IEFALHYNF--RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL 81 (128)
T ss_pred EEEEEEEeC--CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence 466666775 446999999999999998875 8999999999964 36799999999999999999999843 3
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
....|.|.|||.+.. ++++||++.|+|.++..... .....+||+|.
T Consensus 82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred CCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 467899999999988 89999999999999976532 23467999973
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=151.12 Aligned_cols=113 Identities=27% Similarity=0.487 Sum_probs=95.2
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~ 96 (763)
..+++.|+ ...+.|.|+|++|+||++.+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+. ++
T Consensus 4 i~~sl~y~--~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l 81 (125)
T cd08393 4 VQFALDYD--PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL 81 (125)
T ss_pred EEEEEEEE--CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh
Confidence 35555665 4567999999999999999875 8999999999953 3578999999999999999999985 34
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
....|.|+|||.+.. ++++||++.++|.++.... ....||+|.
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 567899999999988 8999999999999997552 256899874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=146.62 Aligned_cols=116 Identities=35% Similarity=0.647 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
|.|.|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.+. ...+.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999998889999999999999889999999999999999999998764 57899999999987 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (763)
|++.+++.++..+ ..+|++|.++.+ ....|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998754 358999987653 3468999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=150.05 Aligned_cols=122 Identities=32% Similarity=0.534 Sum_probs=103.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
.|+|+|++|++|+..+..+.+||||++++++. +.+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 48999999999999998899999999999764 46899999999999999999998653 56799999999988
Q ss_pred -CCeeeEEEEEEccccCCCCCCC-CCCcCeEEEeecCCC-CccceEEEEEEEE
Q 004297 112 -KDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (763)
++++||++.+++.++....+.+ .....+||+|+...+ .+..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999999764432 345679999997542 2468999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=147.41 Aligned_cols=116 Identities=35% Similarity=0.562 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
.|+|+|++|++|...+..+.+||||++++++++.+|++++++.||.|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999998888999999999999999999999999999999999999765567899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCCC-----CccceEEEEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-----DKVRGELMLAV 159 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~~~~G~i~l~~ 159 (763)
.+.+++.++.... ....||.|.+... .+..|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999997643 2467999987432 13568888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=148.73 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=87.3
Q ss_pred cceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~-~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V 431 (763)
.+.|.|.|++|+||+++ +. .|.+||||++.+.+ .+.||+++++++||+|||.|.|.+... ...|.|.|
T Consensus 14 ~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 37999999999999987 44 48899999998842 367999999999999999999998652 56999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccC---CCeEeeeEee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPL 473 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~---~~~~~~~~~L 473 (763)
||.+.++ ++++||.+.|+|.++.- +....+||+|
T Consensus 91 ~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLK--------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCc--------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998765 78899999999999854 3467899998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=145.52 Aligned_cols=103 Identities=28% Similarity=0.452 Sum_probs=92.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGR 118 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~ 118 (763)
.|.|+|++|++|+..+..+.+||||++++++++++|++++++.||.|||+|.|.+.++..+.|.|+|||.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 489999999999998888999999999999999999999999999999999999987667889999999987 899999
Q ss_pred EEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 119 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
+.++|.++.... .....+||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998653 2346899999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=146.40 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=98.6
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (763)
+...|+|+|++|+||+.. +.+||||+|.+++. ..+|++ .++.||.|||+|.|.+.......+.|.|||.+.. +|
T Consensus 2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD 77 (126)
T ss_pred ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence 345799999999999874 47899999999884 468887 4689999999999987554446799999999988 89
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEEEEEEcc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAVWMGT 163 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~ 163 (763)
++||.+.++|.++..+. ....||+|.... +....|+|+++++|..
T Consensus 78 ~~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999988653 357899999865 3456799999998863
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=148.71 Aligned_cols=112 Identities=22% Similarity=0.313 Sum_probs=94.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
.+++.| .+..+.|.|+|++|+||+..+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+.. +.
T Consensus 5 ~~sl~y--~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~ 82 (125)
T cd04029 5 LFSLSY--DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLE 82 (125)
T ss_pred EEEEEE--ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhC
Confidence 445555 5677899999999999998765 47899999999963 35789999999999999999999853 34
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
...|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 83 ~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 83 TRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 67899999999988 8999999999999998763 267899874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=148.21 Aligned_cols=123 Identities=27% Similarity=0.413 Sum_probs=98.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC--
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG-- 440 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~-- 440 (763)
.|+|+|++|+||+.. |..|.+||||++.+++...+|+++.+++||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999987 566889999999999999999999999999999999999987777899999999852100
Q ss_pred -CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 441 -DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 441 -~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
.+...+.|++||.+.+++.++.... ..||+|.....++ +..|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 0001126899999999999986543 7899997654333 2469998753
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=145.71 Aligned_cols=115 Identities=24% Similarity=0.418 Sum_probs=97.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 40 LYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 40 L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
|.|+|.+|+||+..+ ..|.+||||++.++++ ..+|+++++|.||.|||+|.|.+.+. ...|.|.|||++.. ++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999864 4578999999999875 67999999999999999999999753 46899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (763)
|.+.++++++..+. ....||+|+... ..+..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999998643 257899999753 2235799998864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=147.04 Aligned_cols=114 Identities=35% Similarity=0.609 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 38 QYLYVRVVKAKDLPPKDV------TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~------~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
|.|+|+|++|++|+..+. .+.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998764 36899999999999999999999999999999999999766678999999999888
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEE
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 160 (763)
++++||.+.+++.++..+. ...+||+|.+. ..|+|++.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCC----CCceEEEEEe
Confidence 8999999999999998542 36799999864 2488988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=145.82 Aligned_cols=103 Identities=30% Similarity=0.432 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEeC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKDK 108 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d~ 108 (763)
.|+|+|++|++|+..+ .|.+||||+|++.+ ++++|+++.+|.||+|||+|.|.+. .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 59999999999832 3568999999999999999999985 23456799999999
Q ss_pred CCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 109 DFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 109 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
+.. ++++||++.+++.++..+. ....|++|....
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCcc
Confidence 877 7999999999999999664 257899997653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=145.01 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=86.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
+.|.|.|++|++|..+ +..||||+|++|+++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999643 35699999999999999999988 599999999999988877899999999864
Q ss_pred CCCCCCCCccEEEEEecccccCCCeE--eeeEeeee
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVY--THSYPLLV 475 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~--~~~~~L~~ 475 (763)
.|++||++.|+|.++..+... ..||+|..
T Consensus 71 -----~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 -----WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred -----CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 689999999999999765544 89999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-17 Score=148.08 Aligned_cols=122 Identities=27% Similarity=0.454 Sum_probs=99.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC---------CCceEEEEEEeC
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---------QSSVLEVTVKDK 108 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------~~~~l~i~V~d~ 108 (763)
++|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||.|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985322 125799999999
Q ss_pred CCC-CCeeeEEEEE-EccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 109 DFV-KDDFMGRVLF-DLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 109 ~~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+.. +|++||++.+ ++..+... .......+|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~--~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG--QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC--CchhheeEEeEEEE
Confidence 988 8899999997 34333321 1244578999998543 35799999987753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-17 Score=151.59 Aligned_cols=119 Identities=27% Similarity=0.458 Sum_probs=101.3
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeeeCCCCCCee
Q 004297 37 MQYLYVRVVKAKDLPPKD------------------------------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEW 85 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~------------------------------~~~~~dPyv~v~~~~~~-~kT~~~~~t~nP~W 85 (763)
.|.|.|+|++|++|+.+| ..|.+||||+|.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999887 34678999999999854 69999999999999
Q ss_pred ccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--ccceEEEEEEEE
Q 004297 86 NQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWM 161 (763)
Q Consensus 86 ne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~ 161 (763)
||+|.|.+... .+.|.|.|||.+..++++||++.++++++..+. ...+|++|.+..++ ...|.|++++.|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998654 467999999999888899999999999998653 36799999886544 345899998876
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=145.71 Aligned_cols=101 Identities=18% Similarity=0.263 Sum_probs=86.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-C----C--EEEeeeeecCCCCCccccEEEEEeeCC----CcEEEEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-G----Q--KWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-~----~--~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V 431 (763)
.|+|.|++|+||+.. + .|.+||||+|.+ | . ++++|+++.+++||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 488999999999875 4 389999999997 3 2 357899999999999999999999742 35799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||++..+ +|++||++.++|+++..++....|++|..
T Consensus 77 ~D~d~~~--------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR--------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC--------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 78999999999999999888899999953
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=148.58 Aligned_cols=120 Identities=29% Similarity=0.392 Sum_probs=99.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~ 438 (763)
+|.|+|+|++|+||+..+ ...+.+||||++.+++ ..++|+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998642 1346799999999987 789999999999999999999998866889999999998765
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCCeEee-eEeeeeeCCCCcccceEEEEEEEEe
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTH-SYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+|++||++.++|.++..+..... |+++. . +.+..|+|+++++|.
T Consensus 79 --------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~-~~k~~G~i~~~l~~~ 123 (124)
T cd04044 79 --------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---R-NGKPVGELNYDLRFF 123 (124)
T ss_pred --------CCceeEEEEEEHHHhccCccccCcchhhh---c-CCccceEEEEEEEeC
Confidence 78999999999999987765543 44453 2 234569999999984
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=146.32 Aligned_cols=113 Identities=32% Similarity=0.523 Sum_probs=98.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|.|+|++|++|+..+..+.+||||++++++ ++.+|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999964 57899999999999999999999876556789999999998889999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
|++.+++.++..+. ....|++|.+.. .|++.+++.+
T Consensus 82 G~~~~~l~~l~~g~-----~~~~~~~L~~~~----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGE-----KVRVTFSLNPQG----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCC-----cEEEEEECCCCC----CceEEEEEEe
Confidence 99999999998653 367899998752 4888888754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-17 Score=147.83 Aligned_cols=114 Identities=26% Similarity=0.506 Sum_probs=96.9
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
++.+...+.++.+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +....
T Consensus 4 ~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~ 83 (124)
T cd08387 4 ELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRT 83 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCE
Confidence 34454455567789999999999999999889999999999953 46899999999999999999999753 33568
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
|.|+|||++.. ++++||++.++++++..+. ....||+|+
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 99999999988 8999999999999998653 357899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=144.75 Aligned_cols=106 Identities=26% Similarity=0.443 Sum_probs=92.9
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC----CCceEEEEEEeCCC
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI----QSSVLEVTVKDKDF 110 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~~l~i~V~d~~~ 110 (763)
++.+.|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35689999999999998 57899999999999999999999999999999999997432 24689999999998
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
. ++++||++.++|+++..+ +++....+|++|.++
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred cccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 7 899999999999999865 346778999999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=146.97 Aligned_cols=101 Identities=20% Similarity=0.346 Sum_probs=86.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~ 434 (763)
+.|.|+|++|+||+++ + .|.+||||++.+.+ ...||+++.++.||+|||.|.|.+... ...|.|.|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 7899999999999987 4 57899999998853 357999999999999999999998742 45799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
+..+ ..+++||.+.|+|.++..+....+||.|
T Consensus 88 ~~~~-------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8653 1468999999999999888878999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=146.81 Aligned_cols=112 Identities=20% Similarity=0.366 Sum_probs=94.4
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCCCCCCeeccEEEEEec--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 97 (763)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||++++-+ .++||++++++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~--~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYD--SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEEC--CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 3444555 56679999999999999988888999999999854 3678999999999999999999984 456
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
...|.|.|||.+.. ++++||.+.|+|+++....+ ....||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 78999999999988 89999999999999965532 35779875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-17 Score=147.15 Aligned_cols=103 Identities=27% Similarity=0.354 Sum_probs=90.4
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDN 434 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~ 434 (763)
.+.|.|+|++|+||+++ +..|.+||||++.+.+ ..++|++++++.||+|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 37999999999999987 5568899999998743 468999999999999999999998752 46899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
+.++ +|++||++.++|+++..+....+|++|.
T Consensus 92 d~~~--------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS--------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC--------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9876 7899999999999998888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=146.13 Aligned_cols=116 Identities=26% Similarity=0.430 Sum_probs=100.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
|.|+|++|++|+. ..|.+||||++++++ ++.+|+++.++.||+|||+|.|.+.. ....|.|+|||.+.. ++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 6799999999987 678999999999974 57899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCCC--CccceEEEEEEEEcc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGT 163 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~ 163 (763)
|++.+++.++..... ..+|++|....+ ....|+|.+++.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999986632 468999987643 346899999998864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=143.54 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=83.7
Q ss_pred ceEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDNCHLH 438 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~-~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~~~~~ 438 (763)
|+|.|+|++|+||++.+... .++.+||||++.++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875421 234689999999999999999999999999999999998753 458999999999876
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCC
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
+|++||++.++|++|..+.
T Consensus 81 --------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 --------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997653
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=144.82 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=101.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
...|+|+|++|++|...+..|.+||||++.+++++.+|++++++.||.|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 358999999999999998889999999999999999999999999999999999988754 6789999999988889999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC---CCccceEEEEEEEEc
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK---GDKVRGELMLAVWMG 162 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~G~i~l~~~~~ 162 (763)
|++.+++..+... ..+|++|.... .....|+|.+++.+.
T Consensus 81 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCc-------CceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999875422 45788986432 235679999998664
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=146.38 Aligned_cols=102 Identities=27% Similarity=0.403 Sum_probs=89.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCcc-ccEEEEEeeCC---CcEEEEEEEeCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKW-NEQYTWEVFDP---CTVITIGVFDNCHLHG 439 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~w-ne~~~~~v~~~---~~~l~i~V~d~~~~~~ 439 (763)
|.|+|++|+||++++. ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998732 2578999999999999999999999999999 99999999863 468999999999876
Q ss_pred CCCCCCCCCCccEEEEEecccccC---CCeEeeeEeeee
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPLLV 475 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~---~~~~~~~~~L~~ 475 (763)
+|++||++.+++.++.. +....+||+|.+
T Consensus 78 -------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999976 456899999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=151.00 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=93.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEee---------------C
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---------------D 422 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~---------------~ 422 (763)
.|.|+|++|+||++ ..|.+||||+|.+.+ ...+|+++++++||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 47899999999986 247899999999966 5689999999999999999999995 1
Q ss_pred -CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC-CeEeeeEeeeeeCCCC---------cccceEEEEEE
Q 004297 423 -PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPLLVLYPNG---------VKKMGEIHLAV 491 (763)
Q Consensus 423 -~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~i~l~~ 491 (763)
....|.|.|||++..+ +|++||++.|+|..+..+ .....||+|....... ....|+++|.+
T Consensus 76 ~~~~~L~i~V~d~~~~~--------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG--------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC--------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1357999999998765 789999999999999877 5668999996543222 12357777654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-17 Score=147.43 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=90.1
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~ 432 (763)
.+.|.|+|++|+||+.+ +..+.+||||++.+. ...++|++++++.||+|||.|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 47999999999999987 556899999999884 3578999999999999999999998642 468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
|++... .++|++||.+.|+|.++..+....+||+|+
T Consensus 92 ~~~~~~------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFL------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCccc------CCCCceEEEEEEecccccccCCccceEECc
Confidence 998641 017899999999999998877789999983
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-17 Score=142.26 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=87.9
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~ 441 (763)
.|.|+|++|+||++. +..+.+||||+++++++..+|+++.++.||+|||.|.|.+.++ .+.|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLA---KSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCc---ccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC-----
Confidence 378999999999986 5568999999999999999999999999999999999999985 6789999999752
Q ss_pred CCCCCCCCccEEEEEecccccCC--CeEeeeEeeee
Q 004297 442 KAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLV 475 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~~ 475 (763)
+++||++.++|.++..+ .....||+|.+
T Consensus 73 ------~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 ------GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ------CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 67999999999998654 46789999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=146.19 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=85.7
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V 431 (763)
.+.|.|+|++|+||+.+ +..+.+||||++.+.+ ...+|++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 37999999999999987 5568899999998854 46899999999999999999998654 256899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||++..+ ++++||++.++|.+.... ...+||+|.
T Consensus 92 ~d~~~~~--------~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDG--------ENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EeCCCCC--------CCcEeeEEEEeccccccc-CCcceEECc
Confidence 9998865 789999999999983222 236899983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=142.82 Aligned_cols=116 Identities=32% Similarity=0.518 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
|.|+|++|++|+..+..|.+||||++.+++. ..+|++++++.||.|||.|.|.+.. ....|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999885 4699999999999999999999865 347899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (763)
++.++++++.... ....+|++|.+.. +....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~----~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHP----RGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCC----CCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999998886431 2256899998653 2346799998764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=145.93 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=99.6
Q ss_pred cceEEEEEEEccCCCCCccCC-------CCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~-------~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~ 432 (763)
.|.|+|+|++|+||.+.+... ..|.+||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 389999999999998764310 13689999999999876 69999999999999999999997 4678999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccC--CCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|++..+ +|++||++.++|.++.. +.....|++|. +.|+|++++.+..
T Consensus 82 d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG--------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC--------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999987 56679999994 3599999888753
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=149.09 Aligned_cols=102 Identities=28% Similarity=0.482 Sum_probs=87.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec---------------CCCCc
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD---------------RIQSS 99 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~---------------~~~~~ 99 (763)
|.|+|++|++|+. .+|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7999999999988 568999999999987 5679999999999999999999984 22346
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|.|||++.. +|++||++.|++..+.... .....||+|.++.
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 799999999988 8999999999999988651 1357899998775
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=144.73 Aligned_cols=103 Identities=26% Similarity=0.360 Sum_probs=89.8
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEe
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFD 433 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d 433 (763)
.+.|.|.|++|+||+.+ +..|.+||||++.+ ++...+|++++++.||.|||.|.|.+.. ....|.++|||
T Consensus 15 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 37899999999999886 55688999999988 3457899999999999999999998542 24579999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
++..+ ++++||++.++++++..+.....|++|.
T Consensus 92 ~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS--------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc--------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99875 7899999999999999888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=143.83 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=86.5
Q ss_pred cceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~-g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V~ 432 (763)
.+.|+|+|++|+||++. +.. |.+||||++.+. .+..||+++++++||+|||.|.|. +.. ....|.++||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 37999999999999987 443 789999999884 346799999999999999999994 331 2457999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCC--CeEeeeEeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLL 474 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~ 474 (763)
|++.++ +|++||++.|+|+++.-+ +....|.+|+
T Consensus 92 d~d~~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS--------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC--------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 998876 899999999999998544 6788999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=145.27 Aligned_cols=112 Identities=32% Similarity=0.481 Sum_probs=94.9
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
.+++.|+ ...+.|.|+|++|++|+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+.. .....
T Consensus 6 ~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 6 QFSLDYD--FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEe--CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 4555555 45569999999999999998889999999999964 46789999999999999999999853 34568
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
|.|+|||++.. ++++||++.+++.++..+. ...+|++|.
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 99999999988 8999999999999987643 367999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=143.32 Aligned_cols=105 Identities=17% Similarity=0.245 Sum_probs=89.5
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--C----CEEEeeeeecCCCCCccccEEEEEeeC---CCcEEE
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--G----QKWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVIT 428 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~ 428 (763)
.+..+.|.|.|++|+||+++ +..|.+||||++.+ + ..+.||+++++++||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 34458999999999999987 55688999999987 2 247899999999999999999999874 367999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC-CeEeeeEee
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L 473 (763)
|.|||++..+ ++++||.+.|+|.++... ....+||+|
T Consensus 87 ~~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ--------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC--------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998765 789999999999999554 457889976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=143.88 Aligned_cols=123 Identities=23% Similarity=0.435 Sum_probs=102.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
..|.|.|++|+||+++ .||||.+.+++.. .||+++.++.||.|+|.|.|.+..+...++|.||+.+...
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 6899999999999874 3799999999987 5999999999999999999987777788999998765321
Q ss_pred CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCC-------cccceEEEEEEEEeec
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG-------VKKMGEIHLAVRFTCS 496 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~~~~~ 496 (763)
.+..++++||+|.|++.++..+....+||||....... .+..|+|+++++|.+.
T Consensus 81 --~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 --KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred --ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 11226789999999999999999999999998766543 2345799999999764
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=145.02 Aligned_cols=112 Identities=38% Similarity=0.600 Sum_probs=92.4
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC---CCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR---IQS 98 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~ 98 (763)
+.+...+.+..+.|.|+|++|++|+..+..+.+||||++++.+ ++++|++++++.||+|||+|.|.+.. +..
T Consensus 5 l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~ 84 (125)
T cd04031 5 IQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKE 84 (125)
T ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCC
Confidence 3444444456679999999999999998889999999999975 57789999999999999999998632 346
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
..|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 85 RTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 7899999999988 899999999999983322 145899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=144.30 Aligned_cols=118 Identities=19% Similarity=0.357 Sum_probs=96.6
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC----------CcEEEEEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP----------CTVITIGVF 432 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~----------~~~l~i~V~ 432 (763)
.|+|+|++|+||+++ |..|.+||||++.+++...+|+++++++||.|||.|.|.+... ...|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAA---DKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCC---CCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 689999999999987 5668999999999999999999999999999999999975421 257999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEE-eccccc---CCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRI-RLSTLE---TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i-~l~~l~---~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|++..+ +|++||++.+ ++..+. .+....+||+|.. .| ...|+|.+++++..
T Consensus 79 d~d~~~--------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~---~~-~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVG--------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK---GG-QSAGELLAAFELIE 133 (135)
T ss_pred eCcCCC--------CCccceEEEeeeeeecccCCCCCCCceEEEeec---CC-CchhheeEEeEEEE
Confidence 999875 7899999987 444443 3456689999963 23 35699999988753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=143.96 Aligned_cols=104 Identities=19% Similarity=0.338 Sum_probs=89.0
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V 431 (763)
..+.|.|+|++|+||++++. ..|.+||||++.+.+ ...+|++++++.||+|||.|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 34799999999999998731 457899999998732 358999999999999999999998752 56899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
||++..+ ++++||++.++|.++..+...+.||+|
T Consensus 90 ~d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG--------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc--------CCceeeEEEEecccccccCCCccEEEC
Confidence 9998876 789999999999999777777999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=143.38 Aligned_cols=110 Identities=25% Similarity=0.451 Sum_probs=90.3
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC-CCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~ 99 (763)
++.+.|++ ..+.|.|+|++|+||+..+ .|.+||||++++.+ .++||++++++.||.|||+|.|.+... ...
T Consensus 2 ~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~ 78 (119)
T cd08685 2 QLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK 78 (119)
T ss_pred EEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCC
Confidence 34455555 4579999999999999988 78999999999975 356899999999999999999998431 235
Q ss_pred eEEEEEEeCCCC--CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 100 VLEVTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 100 ~l~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|.|+|||++.. ++++||.+.|++.++..+. ...+||.|
T Consensus 79 ~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 79 RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred EEEEEEECCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 689999999876 4799999999999997442 35789976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=143.27 Aligned_cols=118 Identities=25% Similarity=0.328 Sum_probs=94.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-CEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|+|+|++|+||+.+ +..|.+||||++.++ .+.+||+++++++||.|||.|.|.+.. ...|.|+|||++..+
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999876 566899999999996 667999999999999999999999976 789999999998764
Q ss_pred CCCCCCCccEEEEEecccccCCC-eEeeeEeeeeeCCCC-cccceEEEEEE
Q 004297 443 AGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVLYPNG-VKKMGEIHLAV 491 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~~~~-~~~~~~~L~~~~~~g-~~~~G~i~l~~ 491 (763)
...|++||++.+++.++.... ....||+|....... ....|+|.+++
T Consensus 74 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 --KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred --CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 012689999999999986544 336799996554322 12358887754
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=142.91 Aligned_cols=114 Identities=22% Similarity=0.340 Sum_probs=99.0
Q ss_pred EEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCC
Q 004297 368 ILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAG 444 (763)
Q Consensus 368 v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~ 444 (763)
|++|+||+. ..|++||||++.+++..++|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 678999985 357899999999999999999999999999999999999753 678999999998875
Q ss_pred CCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 445 GARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 445 ~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+|++||++.++++++..+.....|++|.... +....|+|++++.|.++
T Consensus 71 --~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 --RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred --CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 7899999999999999888889999996533 33335999999998664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=142.65 Aligned_cols=113 Identities=35% Similarity=0.614 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-------
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (763)
.|.|+|++|++|+..+..+.+||||++++++++.+|+++.++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999999899999999999999999999998654 56799999999851
Q ss_pred -----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEE
Q 004297 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAV 159 (763)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~ 159 (763)
++++||.+.+++.++... ..+||.|++..+. ..+|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 689999999999987532 5689999976643 5789998863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-16 Score=142.35 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=100.5
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC--CCceEEEEEEeCCCC-CCeeeEEEE
Q 004297 44 VVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDFMGRVL 120 (763)
Q Consensus 44 v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~lG~~~ 120 (763)
|++|++|+. ..+.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999988 578999999999999999999999999999999999998643 468899999999988 899999999
Q ss_pred EEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 121 FDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 121 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
++++++..+. ....|++|.+..+....|+|+++++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 9999998653 36789999887766667999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=143.29 Aligned_cols=115 Identities=25% Similarity=0.366 Sum_probs=93.4
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEE-ec--CCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--RIQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~ 97 (763)
.++++.|+. ..+.|.|+|++|+||+..+.. +.+||||++.+.+ ++.||++++++.||.|||+|.|. +. +..
T Consensus 5 l~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~ 82 (128)
T cd08388 5 LFFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ 82 (128)
T ss_pred EEEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence 355666664 557999999999999998875 8999999999964 46799999999999999999994 42 334
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
...|.|+|||++.. ++++||++.++|+++..... .....|.+|+
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 46799999999988 89999999999999976521 2256788775
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=141.89 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=85.5
Q ss_pred ceEEEEEEEccCCCCCccCCCC-CCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEe
Q 004297 362 GVLELGILNAQGLMPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFD 433 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~-g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d 433 (763)
|.|+|+|++|+||+++ +.. |.+||||++.+. ...++|+++++++||+|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 555 789999999883 346899999999999999999998864 35689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
++..+ +|++||++.+++.++.+. .+|+++
T Consensus 78 ~d~~~--------~dd~lG~~~i~l~~l~~~---~~~~~~ 106 (111)
T cd04041 78 SDRFT--------ADDRLGRVEIDLKELIED---RNWMGR 106 (111)
T ss_pred CCCCC--------CCCcceEEEEEHHHHhcC---CCCCcc
Confidence 99876 789999999999999754 578887
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=146.69 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=88.8
Q ss_pred eEEEEEEEccCCCCCccC-----------CCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEE
Q 004297 363 VLELGILNAQGLMPMKTK-----------DGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITI 429 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~-----------~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i 429 (763)
.|.|+|++|++|++++.. +..+.+||||+|.++++..+|+++++++||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998532 1235799999999999999999999999999999999998754 569999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCe-------EeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRV-------YTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~-------~~~~~~L~~ 475 (763)
+|||+|..+ +|++||++.|+|.++..... -.+|+.|.+
T Consensus 81 ~v~D~d~~~--------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 81 QIRDWDRVG--------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEECCCCC--------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999999876 89999999999999865442 257888865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=142.99 Aligned_cols=112 Identities=31% Similarity=0.525 Sum_probs=94.6
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++..
T Consensus 6 ~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~ 83 (127)
T cd04030 6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR 83 (127)
T ss_pred EEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence 4555555 66789999999999999999889999999999963 5789999999999999999999984 3345
Q ss_pred ceEEEEEEeCCCC---CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 99 SVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 99 ~~l~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
..|.|.|||.+.. ++++||++.+++.++..+. ...+||+|.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 7899999999873 7999999999999987553 357899884
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=137.99 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=82.7
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC-CCceEEEEEEeCCCC-
Q 004297 38 QYLYVRVVKAKDLPPKDVT----GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKDFV- 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~----~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~d~~~~- 111 (763)
|.|.|+|++|++|+..+.. +.+||||+++++++++||++++++.||+|||+|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 3589999999999999999999999999999999998543 245799999999988
Q ss_pred CCeeeEEEEEEccccCCCCC
Q 004297 112 KDDFMGRVLFDLNEIPKRVP 131 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~ 131 (763)
+|++||++.++|+++..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=139.76 Aligned_cols=107 Identities=26% Similarity=0.372 Sum_probs=93.2
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeCCC----CCeEEEEEEEcc
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF----EEHLILTVEDRV 272 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~L~i~V~d~d 272 (763)
|+.+.|+|+|++|++|. ++.+||||++++++++++|+++++ +.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46678999999999998 467899999999999999999876 999999999999986543 468999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccc
Q 004297 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (763)
Q Consensus 273 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (763)
..+++++||++.++++++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888999999999999999753 455678999999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-16 Score=140.31 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C--Cee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG-NYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K--DDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~--d~~ 115 (763)
|+|+|++|++|+..+..+.+||||+++++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578899999999999999999999975 67899999999987 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCC---CccceEEEEEE
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAV 159 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~ 159 (763)
||++.+++.++..... ....|++|..... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975432 2467999977653 34578888764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=143.93 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeC-CCCCCeeccEEEEEecCCC----CceEEEEEEeCCCC-
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFE-KKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV- 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~-~t~nP~Wne~f~f~v~~~~----~~~l~i~V~d~~~~- 111 (763)
+|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+.+.. ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988889999999999998 889999975 5899999999999997653 68899999999986
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEE
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 157 (763)
++++||++.+++.++......+......||+|....| +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 8999999999999999876533345678999998765 45788863
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=139.23 Aligned_cols=104 Identities=36% Similarity=0.558 Sum_probs=90.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeeeCCCCCCee-ccEEEEEecCC--CCceEEEEEEeCCCC-CCe
Q 004297 40 LYVRVVKAKDLPPKDV-TGSCDPYVEVKMGNYKGTTRHFEKKTNPEW-NQVFAFSKDRI--QSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~~~~kT~~~~~t~nP~W-ne~f~f~v~~~--~~~~l~i~V~d~~~~-~d~ 114 (763)
|.|+|++|++|+.++. .+.+||||+++++++++||++++++.||.| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5799999999998874 688999999999999999999999999999 99999998542 357899999999988 889
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 1234788999975
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=140.91 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCEEEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEEEe
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVFD 433 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V~d 433 (763)
.+.|.|+|++|+||++. +..|.+||||++.+ ..++.||+++++ .||+|||.|.|+ +.. ....|.+.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 37899999999999987 55688999999866 235689999887 999999999998 543 36789999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 91 ~~~~~--------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMR--------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcc--------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99876 7899999999999998888889999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-16 Score=141.39 Aligned_cols=113 Identities=32% Similarity=0.524 Sum_probs=94.5
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEec---CCCCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD---RIQSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~ 99 (763)
.+++.|+ ...+.|.|+|++|++|+..+..+.+||||++.+. .++.+|++++++.||.|||+|.|.+. .+...
T Consensus 6 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~ 83 (125)
T cd08386 6 QFSVSYD--FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR 83 (125)
T ss_pred EEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence 4555554 5567999999999999999888999999999994 36789999999999999999999742 23456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
.|.|+|||++.. ++++||++.+++.++.... ....|+.|.+
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~~ 125 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLKP 125 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecCC
Confidence 799999999988 8999999999999998643 3678998863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=148.17 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=100.8
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCE
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQK 397 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~ 397 (763)
.|+|.+.+++.+...- ..+.. .....|.|.|+|++|+||++. +..|.+||||++.+ +..
T Consensus 1 ~G~l~~~l~y~~~~~~----------~~~~~---~~~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~ 64 (162)
T cd04020 1 RGELKVALKYVPPESE----------GALKS---KKPSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKS 64 (162)
T ss_pred CceEEEEEEecCcccc----------ccccc---cCCCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCc
Confidence 4889999887543210 00000 134569999999999999987 55689999999977 235
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
.+||+++++++||.|||.|.|.+.. ....|.|+|||++.++ +|++||++.+++.++........|+.+
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~--------~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS--------SNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC--------CCceEEEEEEeCCccccCCCccccccC
Confidence 6899999999999999999998643 2458999999999876 799999999999999776666888887
Q ss_pred e
Q 004297 474 L 474 (763)
Q Consensus 474 ~ 474 (763)
.
T Consensus 137 ~ 137 (162)
T cd04020 137 T 137 (162)
T ss_pred C
Confidence 4
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=141.00 Aligned_cols=113 Identities=23% Similarity=0.387 Sum_probs=94.3
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEE-ec--CCCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--RIQS 98 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~~ 98 (763)
..+++.|+ ...+.|.|+|++|+||+..+..+.+||||++.+.+ ++++|++.++ .||+|||+|.|+ +. ++..
T Consensus 5 l~~sl~Y~--~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 5 LDVAFEYD--PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred EEEEEEEC--CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence 34555555 55569999999999999999889999999988854 5778998887 999999999998 53 3456
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
..|.|+|||++.. ++++||++.|+|+++.... ....|++|++
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~p 124 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLEP 124 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCCC
Confidence 7899999999988 8999999999999997542 3678999873
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-16 Score=141.65 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~ 430 (763)
+..+.|.|.|++|+||.+++.. ..+.+||||++.+.. .+.||+++++++||+|||.|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 4448999999999999987421 234599999998743 24699999999999999999999885 25689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||+|..+ ++++||++.+++.. .|....+|..+..
T Consensus 91 V~d~d~~~--------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPG--------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCc--------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999876 89999999999986 3444567776644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=139.43 Aligned_cols=100 Identities=31% Similarity=0.473 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCC---CCceEEEEEEeCCC
Q 004297 38 QYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDF 110 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~~l~i~V~d~~~ 110 (763)
|+|+|+|++|++|+..+.. +.+||||++++.+ ...+|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999954 467999999999999999999987543 35689999999999
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
. +|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 8 899999999999999843 46877654
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-16 Score=140.55 Aligned_cols=111 Identities=23% Similarity=0.410 Sum_probs=92.8
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
.+++.| ....+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +.
T Consensus 4 ~~~l~y--~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~ 81 (123)
T cd08521 4 EFSLSY--NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE 81 (123)
T ss_pred EEEEEE--eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC
Confidence 444455 456679999999999999888 678999999999853 46789999999999999999999853 33
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
...|.|+|||.+.. ++++||++.++|.++..+. ....||+|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 56899999999987 8899999999999997542 25789986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-16 Score=142.40 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=83.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
.|.|+|.|++|+||+.. +. +.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 38999999999999875 44 7899999999999999999999999999999999999999889999999999876
Q ss_pred CCCCCCCCCccEEEEEecccccC
Q 004297 441 DKAGGARDSRIGKVRIRLSTLET 463 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~ 463 (763)
+|++||++.+++.++..
T Consensus 75 ------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ------CCCEEEEEEEEHHHhhh
Confidence 78999999999999743
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-16 Score=140.52 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=86.0
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C-E--EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q-K--WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~-~--~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~ 430 (763)
+..+.|.|.|++|+||+++ +..|.+||||++.+. + + +.||+++++++||+|||.|.|.+.. ....|.|.
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3347899999999999987 566899999999882 2 2 4689999999999999999999875 36789999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ ++++||++.|.... .|....+|..+..
T Consensus 89 V~~~d~~~--------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG--------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC--------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999876 78999999998775 3445578887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=140.70 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=93.3
Q ss_pred EEEEEEEccC--CCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCCCCCccccEEEEEeeCC---------CcEE
Q 004297 364 LELGILNAQG--LMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP---------CTVI 427 (763)
Q Consensus 364 l~v~v~~a~~--L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~~~v~~~---------~~~l 427 (763)
..++|..|+| |++. +..+.+||||++.+ +.+.+||+++++|+||+|||.|.|.+... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455556666 6655 55688999999986 34679999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCc-ccceEEEEEEEEe
Q 004297 428 TIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGV-KKMGEIHLAVRFT 494 (763)
Q Consensus 428 ~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~-~~~G~i~l~~~~~ 494 (763)
.++|||++.+. .+|++||++.++|+.+..+.....|++|.. |. ...|+|+++++..
T Consensus 81 ~~~V~d~~~f~-------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL-------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc-------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEec
Confidence 99999998752 169999999999999987766788999964 22 2468999999874
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=139.23 Aligned_cols=120 Identities=26% Similarity=0.339 Sum_probs=98.5
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 37 MQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
+|.|+|+|++|++|+..+ ..+.+||||++++++ ...+|+++.++.||.|||+|.|.+.. ..+.|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 356799999999998 78999999999999999999999874 478899999999988 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|++||.+.+++.++...... ...|..+.. +.+..|+|.+++.|.+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~--~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR--NGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc--CCccceEEEEEEEeCC
Confidence 99999999999999976431 122444442 3345799999998753
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=138.61 Aligned_cols=115 Identities=27% Similarity=0.456 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLPPKDVT----------GSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~----------~~~dPyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
|.|+|+|++|++|...+.. +.+||||++.+++++ .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999987752 689999999999864 689999999999999999999974 578999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|++.. +++++|++.++|.++..+. ......|++|+. .|.|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC------CcEEEEEEEEec
Confidence 99887 8899999999999988741 123578999973 389999987753
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=138.40 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=89.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEe
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFD 433 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d 433 (763)
..+.|.|.|++|+||++++. ..+.+||||++.+. ....+|+++++++||+|||.|.|.+... ...|.|.|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 34799999999999998731 45789999999873 3467999999999999999999998753 4689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
++..+ ++++||++.++|+++........|++|.
T Consensus 90 ~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRFS--------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcCC--------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 98765 7899999999999998877778999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=138.99 Aligned_cols=113 Identities=22% Similarity=0.347 Sum_probs=95.3
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~ 438 (763)
.|+|+|++|+||+.+ +..|.+||||++.+++ ..++|+++.+++||.|||.|.|.+... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKAD---SSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCC---CCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 588999999999987 5568999999998754 368999999999999999999999874 678999999998865
Q ss_pred CCCCCCCCCCCccEEEEEecccccC---CCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLET---DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
++++||++.++|.++.. +.....|++|.. .|+|++.+.+.
T Consensus 79 --------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~ 121 (126)
T cd04043 79 --------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSME 121 (126)
T ss_pred --------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEe
Confidence 78999999999998632 445678999942 48888887764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-16 Score=138.79 Aligned_cols=95 Identities=22% Similarity=0.394 Sum_probs=84.1
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNC 435 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~~ 435 (763)
....|.|+|+|++|+||+. +..|.+||||+|.++++.+||+++++++||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3567999999999999974 556889999999999999999999999999999999997543 3779999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCC
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETD 464 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~ 464 (763)
..+ +|++||++.++|....++
T Consensus 100 ~~s--------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW--------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC--------CCCeeEEEEEEecCCcee
Confidence 876 899999999999977654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=141.17 Aligned_cols=113 Identities=26% Similarity=0.315 Sum_probs=95.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeec-CCCCCccccEEEEEeeCC-----CcEEEEEEEeCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTII-DSPTPKWNEQYTWEVFDP-----CTVITIGVFDNC 435 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~-~t~~P~wne~~~~~v~~~-----~~~l~i~V~d~~ 435 (763)
.|+|+|++|+||+.. +..+++||||++.+++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 378999999999976 4568999999999988 889999976 589999999999999876 579999999998
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCe-----EeeeEeeeeeCCCCcccceEEEE
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRV-----YTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
.++ +|++||.+.|+|.++..+.. ...||+|.... | +.+|.|++
T Consensus 78 ~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL--------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC--------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 765 78999999999999976543 47899997533 3 34588864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=137.23 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCe
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~ 114 (763)
.|+|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||++.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999998889999999999875 357999999999999999999999765567899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
+||++.++|.++.... +......|++|.. .|.|++.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEeee
Confidence 9999999998765432 1223568999975 3889888877643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=137.99 Aligned_cols=114 Identities=27% Similarity=0.446 Sum_probs=94.1
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
+.+...+.++.+.|.|+|++|++|+..+ ..+.+||||++++.+ +..+|++++++.||+|||+|.|.+.. +....
T Consensus 3 l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~ 82 (123)
T cd08390 3 LWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRT 82 (123)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccE
Confidence 3344444456679999999999999988 678899999999853 46789999999999999999999853 23468
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
|.|+|||.+.. ++++||++.++|.++..... ...|++|++
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~~ 123 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLEP 123 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecCCC-----ceEEEeCCC
Confidence 99999999987 79999999999999987642 468999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=137.72 Aligned_cols=103 Identities=30% Similarity=0.363 Sum_probs=91.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGG 440 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 440 (763)
|.|+|+|++|+||+.. +..|.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987 5568999999999977 468999999999999999999999887789999999999876
Q ss_pred CCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee
Q 004297 441 DKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (763)
Q Consensus 441 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~ 476 (763)
+|++||++.+++.++..+ ....||-|.+.
T Consensus 76 ------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999876 45889988763
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=138.82 Aligned_cols=103 Identities=25% Similarity=0.420 Sum_probs=92.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecC-CCCCccccEEEEEeeCC----CcEEEEEEEeCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWEVFDP----CTVITIGVFDNCH 436 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~~~v~~~----~~~l~i~V~d~~~ 436 (763)
|.|+|.|++|+||+.+ +..+.+||||++.+++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999986 55688999999999999999999875 89999999999999876 5789999999988
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
++ +|++||++.+++.++..+.....||+|..
T Consensus 78 ~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS--------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC--------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999987777799999954
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=144.38 Aligned_cols=105 Identities=30% Similarity=0.438 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEe
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKD 107 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d 107 (763)
..+.|.|+|++|+||+..+..+.+||||++++. .++++|++++++.||.|||+|.|.+. ++....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 568999999999999999988999999999984 25789999999999999999999852 3345689999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
++.. ++++||++.+++.++..... ...|+.+..
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9988 79999999999999875532 467877654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=142.99 Aligned_cols=113 Identities=27% Similarity=0.292 Sum_probs=91.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|+ +....|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|.+. ++..
T Consensus 5 ~~sL~Y~--~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~ 82 (136)
T cd08406 5 LLSLSYL--PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQD 82 (136)
T ss_pred EEEEEEc--CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCC
Confidence 4555555 55669999999999999999889999999999954 2568999999999999999999984 3557
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
..|.|+|||++.. ++++||++.+..... + ....+|..+....
T Consensus 83 ~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~ 125 (136)
T cd08406 83 LSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASL 125 (136)
T ss_pred cEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCC
Confidence 8899999999987 999999999966532 2 1245677666544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=139.41 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=83.0
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 97 (763)
+.+.+.|.+..+.|.|+|++|+||...+. .+.+||||++++.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 4 l~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~ 83 (138)
T cd08407 4 VLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLA 83 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhC
Confidence 44444444566799999999999999873 35589999999976 2568999999999999999999984 345
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccc
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNE 125 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~ 125 (763)
...|.|+|||.+.+ ++++||++.+.+..
T Consensus 84 ~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 84 ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 67899999999998 89999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-16 Score=143.06 Aligned_cols=115 Identities=24% Similarity=0.401 Sum_probs=94.0
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~ 99 (763)
+.+.+.+....+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. +...
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 3444445567789999999999999999889999999999964 36789999999999999999999853 3456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
.|.|+|||.+.. ++++||++.+++.... ....+|+.+....+
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~~~ 124 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKNPD 124 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhCCC
Confidence 899999999987 8999999999997521 12467888766544
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=141.22 Aligned_cols=102 Identities=31% Similarity=0.533 Sum_probs=89.8
Q ss_pred ccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeeeeCCCCCC
Q 004297 33 LVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----------------------------KGTTRHFEKKTNP 83 (763)
Q Consensus 33 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----------------------------~~kT~~~~~t~nP 83 (763)
..++.+.|.|+|++|++|...|..|.+||||++.+.+. .++|+++.++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 35678999999999999999999999999999999642 3689999999999
Q ss_pred eeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 84 EWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 84 ~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|||+|.|.+.++....|.|+|||++ +++||++.+++.++... ...+||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 99999999997766789999999998 89999999999999832 25789986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=169.79 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=94.0
Q ss_pred CCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 383 RGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 383 ~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
.++|||||+|.++++ ..||+++++++||+|||.|.|.|.++...|+|.|||+|.++ +++||.+.|+|.++
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g---------aD~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG---------AQIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC---------CceeEEEEEEHHHc
Confidence 457899999999886 46999999999999999999999998889999999999885 57999999999999
Q ss_pred cCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeecc
Q 004297 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (763)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 497 (763)
..|.....|++|.+...+-.+..|+|+++++|.+..
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 999999999999876654445568999999997764
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=134.51 Aligned_cols=112 Identities=28% Similarity=0.423 Sum_probs=95.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~~~~~ 441 (763)
|+|.|++|+||+.. +..|.+||||++.+++ +.++|+++.++.||.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57899999999986 4567899999999965 45899999999999999999999987 4678999999998765
Q ss_pred CCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHL 489 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 489 (763)
++++||++.+++.++..+.....|++|.. +|..+.|.+.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 -----KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred -----CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 78999999999999998888899999964 34445576654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=135.96 Aligned_cols=95 Identities=27% Similarity=0.329 Sum_probs=83.8
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecC-CCCceEEEEEEeCCCC-
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDR-IQSSVLEVTVKDKDFV- 111 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~~l~i~V~d~~~~- 111 (763)
...++.|+|+|++|++|+. +..+.+||||+|++++++++|++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3567899999999999984 567889999999999999999999999999999999997532 3468899999999998
Q ss_pred CCeeeEEEEEEccccCCC
Q 004297 112 KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~ 129 (763)
+|++||++.++|.....+
T Consensus 103 ~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 103 DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCeeEEEEEEecCCcee
Confidence 999999999999977643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=141.00 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--CE---EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--QK---WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~~---~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~ 432 (763)
.+.|.|.|++|+||+.+ +..|.+||||++.+. ++ ..+|+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 37899999999999987 556899999999873 32 4789999999999999999999874 3567999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|++.++ ++++||++.+++... +....+|++|..
T Consensus 91 d~d~~~--------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT--------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC--------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 999876 789999999999983 445688998854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=138.08 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=89.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~ 434 (763)
+.|.|+|++|+||+.. +..+.+||||++.+.+ ..++|+++.++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 6899999999999976 4567899999998853 578999999999999999999998754 56899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+..+ ++++||++.++|+++... ....||+|.+
T Consensus 90 ~~~~--------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT--------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC--------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8765 789999999999999754 5688999976
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=139.03 Aligned_cols=107 Identities=28% Similarity=0.481 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC-CCceEEEE
Q 004297 40 LYVRVVKAKDLPPKDVT--------------GSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVT 104 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~--------------~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~l~i~ 104 (763)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998744 3689999999999999999999999999999999997432 35689999
Q ss_pred EEeCCCC-CCeeeEEEEEEccccCCCCCCCC---CCcCeEEEeecCC
Q 004297 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPDS---PLAPQWYRLEDRK 147 (763)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~---~~~~~w~~L~~~~ 147 (763)
|||++.. +|++||++.+++.++..... +. ...++|+.|....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGD-EGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCc-cccCCccCceEEEeecCc
Confidence 9999998 99999999999999876531 11 1346899887654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=135.85 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=92.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCC-CCCCeeccEEEEEecCC---CCceEEEEEEeCCCC-C
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK-KTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~---~~~~l~i~V~d~~~~-~ 112 (763)
|.|.|+|++|++|+..+..+.+||||+++++++..+|+++.+ +.||.|||+|.|.+... ....|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999998888889999999999998889998874 89999999999999765 257899999999988 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
+++||++.+++.++..+. ....|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998653 25789999875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=138.63 Aligned_cols=91 Identities=38% Similarity=0.569 Sum_probs=84.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
.|.|+|+|++|++|+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999998887 8999999999999999999999999999999999999875 77899999999988 8999
Q ss_pred eEEEEEEccccCCC
Q 004297 116 MGRVLFDLNEIPKR 129 (763)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (763)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999865
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=137.33 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=87.8
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEE
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITI 429 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i 429 (763)
.+..|.|+|.|++|+||+.+ +..|.+||||++.++ + ...+|+++++++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 34558999999999999987 566899999999884 2 357899999999999999999998743 347999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+|||++.++ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~--------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG--------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC--------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999876 889999999999875 445688888864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=132.49 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=83.0
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCC-CCccccEEEEEeeCC--CcEEEE
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSP-TPKWNEQYTWEVFDP--CTVITI 429 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~-~P~wne~~~~~v~~~--~~~l~i 429 (763)
.|..|.|.|.|++|+||++++ ..+.+||||+|.+ ++ .+.||+++++|+ ||+|||.|.|+|... .-.|.|
T Consensus 10 ~p~~~rLtV~VikarnL~~~~---~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSSS---TPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred cCcCCeEEEEEEEccCCCccc---CCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 456699999999999999872 3466799999976 22 357999999996 699999999999853 457889
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+|||++..+ ++++||++.+..+... +....+|..+..
T Consensus 87 ~v~d~~~~~--------~n~~IG~v~lG~~~~~-~~~~~hW~~m~~ 123 (135)
T cd08692 87 KLYSRSSVR--------RKHFLGQVWISSDSSS-SEAVEQWKDTIA 123 (135)
T ss_pred EEEeCCCCc--------CCceEEEEEECCccCC-chhhhhHHHHHh
Confidence 999998765 8899999999997642 222366766543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-16 Score=159.80 Aligned_cols=105 Identities=33% Similarity=0.578 Sum_probs=94.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC-CCCceEEEEEEeCCC
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR-IQSSVLEVTVKDKDF 110 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~~l~i~V~d~~~ 110 (763)
...|+|+|.+|+||.++|.+|.+||||++++-+ .+++|++++.++||+|||+|.|.+.. .....|.|+|||+|+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 358999999999999999999999999999965 47899999999999999999999843 246789999999999
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
. ++||+|+.++.+++|.+.+ ...||.|.++.
T Consensus 259 TsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred cccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9 9999999999999999764 67899998865
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=135.75 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=84.1
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 430 (763)
+..|.|.|.|++|++|+.+ +..|.+||||++.+ +. +..+|+++++++||+|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 4458999999999999987 55689999999987 22 347999999999999999999998642 3479999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ +|++||++.|+...... ....+|+.|..
T Consensus 88 V~d~d~~~--------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 88 VYGHNVKS--------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEeCCCCC--------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 99998865 89999999977654432 12467887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=137.79 Aligned_cols=102 Identities=31% Similarity=0.549 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeeeCCCCCCeeccEEEEEecCC---------------CCce
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMG----NYKGTTRHFEKKTNPEWNQVFAFSKDRI---------------QSSV 100 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------------~~~~ 100 (763)
|.|+|++|++|+.. ..+.+||||+++++ .++++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6788999999999999999999998654 4678
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
|.|+|||.+.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 8999999999999988542 257899999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=132.60 Aligned_cols=112 Identities=29% Similarity=0.458 Sum_probs=88.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHG 439 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~ 439 (763)
|+|.|++|+||+.. |.+||||++.++++ .++|+++.+ .||.|||+|.|.+.. ....|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 68999999999885 589999999 999999999999986 3457888888876543
Q ss_pred CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
++..+|++.|+. +..+.....||+|......+ +..|+|+++++|
T Consensus 74 -------~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -------RDIVIGKVALSK--LDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -------CeeEEEEEEecC--cCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 566777766554 44466679999997654422 356999998865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=136.31 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=80.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-------CEEEeeeeecCCCCCccccEEEEEeeCC-----CcEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-------QKWVRTRTIIDSPTPKWNEQYTWEVFDP-----CTVIT 428 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-------~~~~~T~~~~~t~~P~wne~~~~~v~~~-----~~~l~ 428 (763)
.+.|.|.|++|+||+++ +..|.+||||+|.+. ...+||+++++|+||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 36899999999999987 556899999999884 3468999999999999999999998752 45899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccC
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~ 463 (763)
|+|||++..+ +|++||++.++|.++..
T Consensus 92 ~~V~d~d~~~--------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG--------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC--------CCcEeEEEEEeHHHCCc
Confidence 9999999876 78999999999999863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=139.05 Aligned_cols=100 Identities=27% Similarity=0.434 Sum_probs=86.8
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----------------------------EEEeeeeecCCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----------------------------KWVRTRTIIDSP 408 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----------------------------~~~~T~~~~~t~ 408 (763)
.++.+.|+|+|++|+||.++ |..|.+||||++.+++ ..++|+++.+++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAK---DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred CCCeEEEEEEEEeccCCccc---CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 57889999999999999987 6678999999998853 237899999999
Q ss_pred CCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 409 TPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 409 ~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
||.|||.|.|.+.+. ...|.|+|||++ |++||++.++++++... ...+||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d------------d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD------------DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC------------CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999999999874 678999999973 57999999999999843 46999986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=132.05 Aligned_cols=118 Identities=27% Similarity=0.338 Sum_probs=96.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
+|.|+|.+|+ |...+..+.+||||+++++++ ..+|++++++.||.|||+|.|.+.+ ...|.|+|||++.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555788999999999987 8999999999999999999999864 57899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC--CCccceEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK--GDKVRGELMLAV 159 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~ 159 (763)
|++.++|.++.............|++|.... +....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999865432222234588888654 224579988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=136.30 Aligned_cols=103 Identities=32% Similarity=0.465 Sum_probs=88.2
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeeCCCCCCeeccEEEEEecCC---
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEKKTNPEWNQVFAFSKDRI--- 96 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~~~--- 96 (763)
+.+...+......|.|+|++|++|+..+..+.+||||+|++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 4444445566779999999999999988889999999999963 468999999999999999999998542
Q ss_pred -CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCC
Q 004297 97 -QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 97 -~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 129 (763)
....|.|+|||++.. ++++||++.++|.++..-
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 356899999999988 799999999999999844
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=132.23 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=93.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
.|+|+|.+|+ |... +..+.+||||++.++++ ..+|+++.++.||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6899999998 5443 44678999999999888 899999999999999999999975 4678999999999876
Q ss_pred CCCCCCCCccEEEEEecccccCCC---e--EeeeEeeeeeCCCCcccceEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLETDR---V--YTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
.|++||++.++|.++..+. . ...|++|........+..|+|++++
T Consensus 75 -----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -----ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -----CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7899999999999986432 1 3468999754421224569998865
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=137.58 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=89.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEEC----CEEEeeeeecCCCCCccccEEEEEeeCC----------------
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYG----QKWVRTRTIIDSPTPKWNEQYTWEVFDP---------------- 423 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~----~~~~~T~~~~~t~~P~wne~~~~~v~~~---------------- 423 (763)
|+|.|++|+||+.+ ..|.+||||++.++ +..++|+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~----~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK----SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc----cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999875 24789999999998 6789999999999999999999998764
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCC
Q 004297 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478 (763)
Q Consensus 424 ~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~ 478 (763)
...|.|+|||++..+ ++++||++.+++.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~--------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS--------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc--------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 458999999998765 78999999999999987777899999976553
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=139.69 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=85.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CC---EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
..+.|.|+|++|+||+++ +..|.+||||++.+ ++ ...+|++++++.||.|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAM---DINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 348999999999999876 55689999999987 33 24789999999999999999999863 246899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||++.++ +|++||++.+++.+. +....+|++|..
T Consensus 90 ~d~~~~~--------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 90 MDKDRLS--------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EECCCCC--------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 9999876 789999999999986 444577877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=134.18 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=95.5
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeeeeCCCCCCeeccEEEEEecCC--------CCceEEEE
Q 004297 40 LYVRVVKAKD--LPPKDVTGSCDPYVEVKM--G---NYKGTTRHFEKKTNPEWNQVFAFSKDRI--------QSSVLEVT 104 (763)
Q Consensus 40 L~v~v~~a~~--L~~~~~~~~~dPyv~v~~--~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~--------~~~~l~i~ 104 (763)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 677777789999999997 2 2688999999999999999999998542 24679999
Q ss_pred EEeCCCC--CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 105 VKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 105 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|||.+.+ +|++||++.++|+.+..+.. ...|++|.+.. +...|.|.+.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~-k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMDGR-KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCc-----ceEEEEhhhCC-CCcCCEEEEEEEecC
Confidence 9999986 79999999999999976632 56799988532 345699999988763
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=138.60 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=87.6
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 430 (763)
+..|.|.|+|++|+||+++ +..|.+||||++.+.+ ...+|+++++++||+|||.|.|.+... ...|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 3458999999999999987 5568899999998843 357999999999999999999998753 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ +|++||.+.+++.. .+....+||++..
T Consensus 87 V~d~d~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGK--------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEeCCCCC--------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99998765 78999999999986 3444578998864
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=131.00 Aligned_cols=104 Identities=27% Similarity=0.393 Sum_probs=91.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|+|+|++|++|+..+..+.+||||++++++ ...+|+++.++.||.|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 568999999999999999999998764 47899999999988 8899
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
||++.+++.++.... ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998762 357888887653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-15 Score=135.96 Aligned_cols=116 Identities=21% Similarity=0.357 Sum_probs=92.2
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
+.+...+....+.|.|+|++|+||+..+..+.+||||++.+.+ .++||++++++.||+|||+|.|.+. ++..
T Consensus 4 i~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~ 83 (138)
T cd08408 4 LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSE 83 (138)
T ss_pred EEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCc
Confidence 3334444456679999999999999998889999999999953 2468999999999999999999985 3556
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||.+.. ++++||++.+++...-.+ ...+|+.+....+
T Consensus 84 ~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 84 VTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred cEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 7999999999988 999999999987644321 1346777765443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=133.43 Aligned_cols=105 Identities=14% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITI 429 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i 429 (763)
+..+.|.|+|++|+||+++ +..|.+||||++.+.+ .+.||++++++.||+|||.|.|.+.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4458999999999999987 5568899999998832 24799999999999999999999874 3568999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
.|||.+..+ ++++||++.+++.....+ ...+|+.+..
T Consensus 89 ~V~~~~~~~--------~~~~iG~v~l~~~~~~~~-~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMK--------RKEMIGWFSLGLNSSGEE-EEEHWNEMKE 125 (138)
T ss_pred EEEECCCCC--------CCcEEEEEEECCcCCCch-HHHHHHHHHh
Confidence 999998865 889999999998865321 2357777643
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=138.83 Aligned_cols=115 Identities=29% Similarity=0.425 Sum_probs=93.9
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
..++..|+ .....|.|+|++|++|+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+.. ..
T Consensus 4 l~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~ 81 (136)
T cd08404 4 LLLSLCYQ--PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELE 81 (136)
T ss_pred EEEEEEEe--CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhC
Confidence 34555565 45678999999999999999889999999999853 25689999999999999999999843 23
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
...|.|+|||++.. ++++||++.+++.. . . ....+|+.|.+..+
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~-----~~~~~w~~l~~~~~ 126 (136)
T cd08404 82 DISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-G-----SGGHHWKEVCNPPR 126 (136)
T ss_pred CCEEEEEEEECCCCCCCccEEEEEECCcC-C-C-----chHHHHHHHHhCCC
Confidence 56799999999998 89999999999987 2 2 12578988876554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=131.35 Aligned_cols=101 Identities=17% Similarity=0.310 Sum_probs=84.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCC-CCeeccEEEEEecC-CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKT-NPEWNQVFAFSKDR-IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~-nP~Wne~f~f~v~~-~~~ 98 (763)
++-+.+.+.+..+.|.|+|++|+||+..+..+.+||||+|++-. .++||+++++|. ||+|||+|.|++.. ...
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 45556667788899999999999999876567789999999853 478899999995 69999999999853 234
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcccc
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (763)
-.|.|+|||++.. ++++||++.+.....
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 5788999999987 999999999998753
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=130.55 Aligned_cols=111 Identities=30% Similarity=0.466 Sum_probs=94.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999998765578899999999987 899999
Q ss_pred EEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEE
Q 004297 118 RVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELM 156 (763)
Q Consensus 118 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~ 156 (763)
++.+++.++..+. ....|++|....+ ...|.+.
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~-~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGG-GKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCC-ccCceEE
Confidence 9999999988653 2578999987643 3456664
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=138.41 Aligned_cols=115 Identities=22% Similarity=0.410 Sum_probs=90.8
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|. +..+.|.|+|++|++|+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+. +...
T Consensus 4 ~~~l~y~--~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 4 LLSLNYL--PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred EEEEEEC--CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 4555555 55679999999999999999889999999999832 3578999999999999999999984 3334
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||++.. ++++||++.+....... ....+|+.|....+
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~ 126 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQR 126 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCC
Confidence 5799999999987 99999999876433221 12467888777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=138.53 Aligned_cols=114 Identities=30% Similarity=0.404 Sum_probs=92.0
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~ 99 (763)
+.+...+.+..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+.. ....
T Consensus 4 l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~ 83 (136)
T cd08402 4 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKV 83 (136)
T ss_pred EEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCC
Confidence 3444444567789999999999999999889999999999953 35689999999999999999999853 2345
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. ++++||++.+++.... ....+|+++....
T Consensus 84 ~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~ 125 (136)
T cd08402 84 HLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASP 125 (136)
T ss_pred EEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCC
Confidence 799999999988 8999999999997532 1246787776554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=130.42 Aligned_cols=116 Identities=27% Similarity=0.390 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeeeCCCCCCee-ccEEEEEecCCCCceEEEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVT 104 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~l~i~ 104 (763)
.+.|++++|+||+ .+..|.+||||++.+.+ ++++|++++++.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 67789999999999953 3689999999999999 9999999853 5689999
Q ss_pred EEeCCCC----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEE
Q 004297 105 VKDKDFV----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAV 159 (763)
Q Consensus 105 V~d~~~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~ 159 (763)
|||++.. .+++||++.+++.++..... .....+||+|+.+.. ..+.|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997653 27999999999999986532 233678999987653 35789998765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=131.05 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=91.2
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-------------CEEEeeeeecCCCCCcc-ccEEEEEeeCCCcEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-------------QKWVRTRTIIDSPTPKW-NEQYTWEVFDPCTVIT 428 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-------------~~~~~T~~~~~t~~P~w-ne~~~~~v~~~~~~l~ 428 (763)
++.|.+++|+||+ . +..|++||||++.+. ++.++|+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4678999999997 4 557899999999883 23689999999999999 999999985 467899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC---CeEeeeEeeeeeCCCCcccceEEEEEE
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD---RVYTHSYPLLVLYPNGVKKMGEIHLAV 491 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 491 (763)
|+|||++..+ + ...+++||++.|++.++.++ .....||+|......+ ...|+|.+.+
T Consensus 77 v~V~D~~~~~---~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS---R--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC---C--ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976432 0 01278999999999999654 3456799986443322 2358888754
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=133.05 Aligned_cols=104 Identities=24% Similarity=0.300 Sum_probs=85.6
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 430 (763)
+..|.|+|+|++|++|+++ +..|.+||||++.+. + ...+|+++++++||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 4458999999999999987 556899999999873 2 257999999999999999999998642 3469999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|||++..+ +|++||++.|++... +....+|+++..
T Consensus 88 v~d~~~~~--------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 88 VVDYDRVG--------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEECCCCC--------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 99999876 899999999998844 334578888754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-15 Score=136.23 Aligned_cols=104 Identities=18% Similarity=0.337 Sum_probs=86.4
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V 431 (763)
..+.|.|.|++|+||+++ + .+.+||||++.+.+ ...+|++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 13 TLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred CCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 347899999999999987 4 57899999998732 35699999999999999999999873 246899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||.+..+ ++++||++.|+......+....+|..+..
T Consensus 89 ~~~~~~~--------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVR--------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCC--------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9998765 78999999999877666666678887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-15 Score=132.56 Aligned_cols=91 Identities=31% Similarity=0.576 Sum_probs=81.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK--GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~--~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
.|+|+|++|++|+..+..+.+||||++++++++ .+|++++++.||+|||+|.|.+..+....|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999988999999999999864 5788889999999999999998666678999999999998 8999
Q ss_pred eEEEEEEccccCCC
Q 004297 116 MGRVLFDLNEIPKR 129 (763)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (763)
||++.+++.+....
T Consensus 81 iG~~~i~l~~~~~~ 94 (124)
T cd04037 81 IGETVIDLEDRFFS 94 (124)
T ss_pred eEEEEEeecccccc
Confidence 99999999987643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=128.92 Aligned_cols=99 Identities=24% Similarity=0.312 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecc
Q 004297 382 GRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLS 459 (763)
Q Consensus 382 ~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~ 459 (763)
..|++||||++.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||++.+ +|++||++.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~---------~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR---------HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC---------CCCeEEEEEecHH
Confidence 4688999999999885 57999999999999999999999875 57899999999875 4789999999999
Q ss_pred cccC-CCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 460 TLET-DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 460 ~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
++.. +.....||+|.+ .+.|+|++++.|.+
T Consensus 80 ~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9853 445679999953 34699999998865
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=133.15 Aligned_cols=113 Identities=21% Similarity=0.379 Sum_probs=90.2
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~ 98 (763)
.+++.|+ ...+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+. ++..
T Consensus 5 ~~sl~y~--~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~ 81 (137)
T cd08409 5 QISLTYN--PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT 81 (137)
T ss_pred EEEEEEC--CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence 4555555 55679999999999999888 78899999999864 3668999999999999999999984 4455
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
..|.|+|||.+.. ++++||++.+.......+. ...+|..+...
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~ 125 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSK 125 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhC
Confidence 7899999999987 8999999999865554332 24556665544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=131.71 Aligned_cols=112 Identities=34% Similarity=0.548 Sum_probs=95.8
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC-CCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~ 99 (763)
.++..|+. +.|+|+|++|++|+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|.+... ...
T Consensus 5 ~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~ 80 (131)
T cd04026 5 YLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDR 80 (131)
T ss_pred EEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCC
Confidence 45555554 68999999999999988888999999999964 578999999999999999999998643 356
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. ++++||++.+++.++... ....||+|.+..
T Consensus 81 ~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 81 RLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred EEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 899999999987 899999999999999854 257899998765
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-15 Score=136.32 Aligned_cols=103 Identities=24% Similarity=0.334 Sum_probs=88.2
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-----EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~ 432 (763)
.+.|.|.|++|+||+.. +..+.+||||++.+.+. ..+|+++.++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 37999999999999976 45678999999988442 57999999999999999999998764 578999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~ 476 (763)
|.+..+ ++++||.+.+++++ .+...++|++|...
T Consensus 90 d~~~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG--------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC--------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998765 78999999999999 55567899999753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-15 Score=136.06 Aligned_cols=115 Identities=26% Similarity=0.460 Sum_probs=92.1
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeeCCCCCCeeccEEEEEec--CCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--N---YKGTTRHFEKKTNPEWNQVFAFSKD--RIQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 97 (763)
..+++.|+ ...+.|.|+|++|+||+..+..+.+||||++++. + .+.+|++++++.||.|||+|.|.+. ...
T Consensus 4 l~~sl~y~--~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~ 81 (136)
T cd08405 4 LLLSLCYN--PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLR 81 (136)
T ss_pred EEEEEEEc--CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhC
Confidence 34555665 4567899999999999998888999999999983 2 3578999999999999999999974 333
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
...|.|+|||.+.. ++++||++.+++.+... ...+|+.+....+
T Consensus 82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 82 ETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred CCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 56899999999988 89999999999987521 2456766665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=130.12 Aligned_cols=89 Identities=27% Similarity=0.395 Sum_probs=79.0
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE--EeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLHG 439 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~~ 439 (763)
+|+|.|++|+||+++ +..|++||||++.+++.. .+|+++++++||+|||.|.|.+..+ ...|.|+|||++..+
T Consensus 1 ~lrV~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPK---DPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCC---CCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC-
Confidence 478999999999987 566899999999998875 5788899999999999999998765 678999999999876
Q ss_pred CCCCCCCCCCccEEEEEeccccc
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
+|++||++.++|.+..
T Consensus 77 -------~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 -------SDDLIGETVIDLEDRF 92 (124)
T ss_pred -------CCceeEEEEEeecccc
Confidence 7899999999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-15 Score=153.46 Aligned_cols=102 Identities=29% Similarity=0.446 Sum_probs=89.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~ 434 (763)
..|.|.|.+|+||.+| |.+|.|||||++++- ..+.+|++++.++||+|||+|+|.+.. ....|.|+||||
T Consensus 180 ~~l~v~i~ea~NLiPM---DpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ceEEEEehhhcccccc---CCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 4899999999999999 777999999999982 235899999999999999999999884 467899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|+.+ +++|+|.....+++|... ...+||.|.+
T Consensus 257 DrTs--------RNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 257 DRTS--------RNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cccc--------cccccceecccHHHHhhc-chhhHHHHhh
Confidence 9976 899999999999999754 3578998865
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=126.78 Aligned_cols=111 Identities=29% Similarity=0.487 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCC--CCceEEEEEEeCCCC-CCee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRI--QSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|+|++|++|+.. +.+||||+++++++ ..+|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999985 479999988 9999999999998542 345788888998876 6677
Q ss_pred eEEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEEEE
Q 004297 116 MGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWM 161 (763)
Q Consensus 116 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~ 161 (763)
+|.+.++.... + ....+||+|.+..+ ....|+|++.++|
T Consensus 78 ~g~v~l~~~~~--~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDL--G-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCC--C-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554333 2 23578999997654 3467999998865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=132.07 Aligned_cols=114 Identities=24% Similarity=0.352 Sum_probs=90.4
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~ 98 (763)
.+++.|. ++.+.|+|+|++|++|+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~~~y~--~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 4 MFSLCYL--PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred EEEEEEc--CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 4555555 56789999999999999999889999999999843 35689999999999999999998743 334
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||++.. ++++||++.+++.... .....|+.+....+
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~ 125 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPR 125 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCC
Confidence 5799999999988 8999999999876322 12356776655443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=127.06 Aligned_cols=116 Identities=27% Similarity=0.446 Sum_probs=97.7
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeeeCCCC-CCeeccEEEEEecCCCCceEEEEEEeC
Q 004297 38 QYLYVRVVKAKDLPPKD--VTGSCDPYVEVKMG------NYKGTTRHFEKKT-NPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~--~~~~~dPyv~v~~~------~~~~kT~~~~~t~-nP~Wne~f~f~v~~~~~~~l~i~V~d~ 108 (763)
..|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 47899999999999877 57889999999994 4568999987765 999999999998765567899999999
Q ss_pred CCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEE
Q 004297 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWM 161 (763)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~ 161 (763)
+..++++||++.+++.++..+ ..|++|.+..|. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 877899999999999998543 368999987765 456899988765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=134.53 Aligned_cols=115 Identities=30% Similarity=0.445 Sum_probs=95.1
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeeCCCCCCeeccEEEEEecCC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRI--QS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~--~~ 98 (763)
.+++.|+ ...+.|.|+|++|++|+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+... ..
T Consensus 4 ~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 4 LLSLSYL--PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred EEEEEee--CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 4555555 445799999999999999888889999999999652 56899999999999999999998643 25
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (763)
..|.|+|||.+.. ++++||.+.+++++ . + ....+|++|.+..++
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~-~-----~~~~~W~~l~~~~~~ 126 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPDS-G-G-----EELEHWNEMLASPRK 126 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCCC-C-C-----cHHHHHHHHHhCCCC
Confidence 7899999999987 89999999999998 2 2 236789999887543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=178.13 Aligned_cols=119 Identities=24% Similarity=0.470 Sum_probs=103.4
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCC--cEEEEEEEeCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPC--TVITIGVFDNC 435 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~--~~l~i~V~d~~ 435 (763)
-..|.|.|+|++|+||. +..|++||||++.+|++ ..||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 45799999999999997 33589999999999965 789999999999999999999999874 78999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceE---EEEEEEEee
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGE---IHLAVRFTC 495 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~~~~ 495 (763)
.++ + +.||++.|++.++..++.++.||+|.. +| +|.|+ |+++++|++
T Consensus 2052 ~f~--------k-d~~G~~~i~l~~vv~~~~~~~~~~L~~---~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFG--------K-SSLGKVTIQIDRVVMEGTYSGEYSLNP---ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccC--------C-CCCceEEEEHHHHhcCceeeeeeecCc---cc-ccCCCcceEEEEEEecC
Confidence 875 4 499999999999999999999999974 22 34577 999888853
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=128.63 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=83.2
Q ss_pred EEEEccCCCCCccCCCCCCCCcEEEEEECCE-------EEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCC--
Q 004297 367 GILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCH-- 436 (763)
Q Consensus 367 ~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~-- 436 (763)
..++|++|++. +..|.+||||++.+.+. .++|+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 45789999987 55689999999988553 3899999999999999999998653 46789999999986
Q ss_pred --CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 437 --LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 437 --~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
.+ +|++||++.+++++|..+.....|++|..
T Consensus 82 ~~~~--------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS--------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 54 78999999999999987766678899843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=125.86 Aligned_cols=98 Identities=24% Similarity=0.392 Sum_probs=80.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeCC----CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V 431 (763)
.+.|+|+|++|+||++. +..+.+||||++.+. ....+|+++.++.||.|||.|.|..... ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 37899999999999976 456789999999872 2368999999999999999999964432 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~ 470 (763)
||++.. .+++||++.++|+++..+.....|
T Consensus 91 ~d~~~~---------~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 91 LDEDRF---------GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EEcCCc---------CCeeEEEEEEEcccCCCCcceEee
Confidence 999764 478999999999999887644333
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=126.21 Aligned_cols=115 Identities=23% Similarity=0.383 Sum_probs=95.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-----
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV----- 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~----- 111 (763)
..|.|.|++|++|+.++ +|||.+.++++. .||+++.++.||.|+|.|.|..... ...++|.||+.+..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 47999999999999865 899999999976 6999999999999999999986443 46799999865532
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC---------ccceEEEEEEEEcc
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD---------KVRGELMLAVWMGT 163 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---------~~~G~i~l~~~~~~ 163 (763)
++++||.+.|++.++..+ ....+||+|.+..+. ...+.|++++.|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 579999999999999954 347899999987754 23478999988864
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=124.95 Aligned_cols=101 Identities=28% Similarity=0.430 Sum_probs=86.0
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCC
Q 004297 55 VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPD 133 (763)
Q Consensus 55 ~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 133 (763)
..|.+||||+++++++ ..+|++++++.||.|||+|.|.+.+.....|.|+|||.+..++++||++.++|+++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4688999999999885 579999999999999999999997766788999999999888999999999999996542
Q ss_pred CCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 134 SPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 134 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
....+||+|.+. ..|+|++++.|.+
T Consensus 86 -~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 86 -SVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred -hccceeEECCCC----CCCEEEEEEEEec
Confidence 235789999862 3599999988764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=120.53 Aligned_cols=91 Identities=29% Similarity=0.539 Sum_probs=68.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~ 438 (763)
|.|.|++|+||+ +.+||||++.+++ ..++|+++.+|+||+|||.|+|++.. ...|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 578999999995 4599999998853 35899999999999999999999864 779999999984100
Q ss_pred -CCCCCCCCCCCccEEEEEecc--cccCCC
Q 004297 439 -GGDKAGGARDSRIGKVRIRLS--TLETDR 465 (763)
Q Consensus 439 -~~~~~~~~~d~~lG~v~i~l~--~l~~~~ 465 (763)
..+ ..++|+++|++.|.|. .+....
T Consensus 72 ~~~d--~~~~d~~~G~g~i~Ld~~~~~~~~ 99 (118)
T cd08686 72 VKLD--GEGTDAIMGKGQIQLDPQSLQTKK 99 (118)
T ss_pred cccc--ccCcccEEEEEEEEECHHHhccCC
Confidence 000 0127999977766654 454443
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=124.88 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=93.6
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE------CCEEEeeeeecCCC-CCccccEEEEEeeCCC-cEEEEEEEeC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY------GQKWVRTRTIIDSP-TPKWNEQYTWEVFDPC-TVITIGVFDN 434 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~------~~~~~~T~~~~~t~-~P~wne~~~~~v~~~~-~~l~i~V~d~ 434 (763)
.|+|+|++|+||+.++. +..+.+||||++.+ +...++|+++.++. ||.|||.|.|.+..+. ..|.|.|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999998631 13578999999988 34568999988876 9999999999998764 5799999998
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+.. +|++||++.+++.++..+ ..|++|....... ...|.|.+.+++
T Consensus 82 ~~~---------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG---------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCC---------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 764 578999999999999776 3688887644332 235888887765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-15 Score=146.84 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=169.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe--c-CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK--D-RIQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v--~-~~~ 97 (763)
++...|+-+ ..++..++..|++|..++.++..|||++..+.+ .+.+|++..+++||.|+|+-.... . +..
T Consensus 83 ~~~~~y~~~--~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDSE--SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhhh--hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 344445544 458899999999999999999999999999986 467889999999999999866553 2 222
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC------CCccceEEEEEEEEcccCCCCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK------GDKVRGELMLAVWMGTQADEAFP 170 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~------~~~~~G~i~l~~~~~~~~d~~~~ 170 (763)
...+.+.|.|.+.. .+++.|+..+++..+..... .....|+.-..+. ..+.+|+|.+++.+..
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s------- 230 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSS------- 230 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCc-------
Confidence 45677888998888 88999999998888875532 2234454333221 1134577776664432
Q ss_pred ccccccccccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCC
Q 004297 171 EAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTIN 245 (763)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~n 245 (763)
....+.|+++.|.+|..+|.++.+||||..++.. .+.+|.+.++ +.|
T Consensus 231 ---------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~ 282 (362)
T KOG1013|consen 231 ---------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLN 282 (362)
T ss_pred ---------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCC
Confidence 2225889999999999999999999999999863 4577888776 999
Q ss_pred ccccceEEEEeeC--CCCCeEEEEEEEccCCCCCceeEEEEEecc
Q 004297 246 PMWNEDLMFVAAE--PFEEHLILTVEDRVAPNKDEVLGKCMIPLQ 288 (763)
Q Consensus 246 P~wne~f~f~~~~--~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~ 288 (763)
|.|++.|.|.+.. .....+.|.|||++..+..+.+|-+.....
T Consensus 283 p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 283 PEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred ccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999998743 335589999999988878999997765544
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=124.60 Aligned_cols=103 Identities=29% Similarity=0.460 Sum_probs=86.6
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe-c--CC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK-D--RI 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v-~--~~ 96 (763)
..+++.|+ +..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|.. . +.
T Consensus 4 ~~~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~ 81 (123)
T cd04035 4 LEFTLLYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI 81 (123)
T ss_pred EEEEEEEe--CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence 34555565 45679999999999999888888999999999843 468999999999999999999963 2 22
Q ss_pred CCceEEEEEEeCCCCCCeeeEEEEEEccccCCC
Q 004297 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 129 (763)
....+.|+|||.+..++++||++.++++++..+
T Consensus 82 ~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 82 QRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 356899999999877889999999999999866
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=123.25 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=82.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCC----C-
Q 004297 44 VVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF----V- 111 (763)
Q Consensus 44 v~~a~~L~~~~~~~~~dPyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~----~- 111 (763)
.++|++|+..+..+.+||||++++.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999998899999999999775 3899999999999999999998643346789999999996 5
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
++++||++.+++.++..... ...|++|.+
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPG-----QKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCC-----cEEEEEccC
Confidence 89999999999999986532 456778744
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=152.96 Aligned_cols=124 Identities=23% Similarity=0.405 Sum_probs=104.1
Q ss_pred eeEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eee
Q 004297 37 MQYLYVRVVKAKDLPPKDV------------------------------------------TGSCDPYVEVKMGNY-KGT 73 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~------------------------------------------~~~~dPyv~v~~~~~-~~k 73 (763)
.|.|.++|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3688999999999875221 247799999999886 569
Q ss_pred eeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--cc
Q 004297 74 TRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KV 151 (763)
Q Consensus 74 T~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~ 151 (763)
|++++++.||+|||+|.|.+.+. ...|.|+|||.|.+++++||++.|+++++..+.. ...|++|.+..++ +.
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~k~ 166 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPPKA 166 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCCCC
Confidence 99999999999999999999875 4689999999999988999999999999987642 5789999987754 34
Q ss_pred ceEEEEEEEEcccCC
Q 004297 152 RGELMLAVWMGTQAD 166 (763)
Q Consensus 152 ~G~i~l~~~~~~~~d 166 (763)
.|.|+++++|.+...
T Consensus 167 ~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 167 ETAIFIDMKFTPFDQ 181 (868)
T ss_pred CcEEEEEEEEEEccc
Confidence 589999999987544
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=118.40 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=67.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeC------
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK------ 108 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~------ 108 (763)
|.|+|.+|++|+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999996 4589999999964 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCeeeEEEEEEcc
Q 004297 109 -DFV-KDDFMGRVLFDLN 124 (763)
Q Consensus 109 -~~~-~d~~lG~~~i~l~ 124 (763)
+.. +|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 344 8999988888765
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=119.91 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=76.5
Q ss_pred EEEEEccCCCCCccCCCCCCCCcEEEEEECCE------EEeeeeecCCCCCccccEEEEEeeC-----CCcEEEEEEEeC
Q 004297 366 LGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK------WVRTRTIIDSPTPKWNEQYTWEVFD-----PCTVITIGVFDN 434 (763)
Q Consensus 366 v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~------~~~T~~~~~t~~P~wne~~~~~v~~-----~~~~l~i~V~d~ 434 (763)
+..++|++|+.+ |..|++||||++.+.+. .++|+++++++||+|| .|.|++.+ +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 355689999987 66689999999987432 4899999999999999 68877542 267999999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
+..+ +|++||++.+++.+|..++ .+++.+
T Consensus 80 d~~~--------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 80 DSSG--------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCCC--------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 9876 8999999999999998654 445544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-13 Score=137.15 Aligned_cols=220 Identities=18% Similarity=0.236 Sum_probs=162.5
Q ss_pred EEEEEEEEccccCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCccccceEEEE--eeCC-CCCeEEEEEEEcc
Q 004297 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTRVSASRTINPMWNEDLMFV--AAEP-FEEHLILTVEDRV 272 (763)
Q Consensus 201 ~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~--~~~~-~~~~L~i~V~d~d 272 (763)
.+..+|..|++|.+++.++..|||++..++. .+++|++..+ +.||.|+|.-... ..++ ....+++.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 5889999999999999999999999999974 4578888776 9999999886554 2222 2346888899999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcc
Q 004297 273 APNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352 (763)
Q Consensus 273 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~ 352 (763)
.+...+++|+..+.+..+..++. .....|+.-..+... ....+.+..|.+.+++.+.
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~r--ad~~~~E~rg~i~isl~~~------------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSER--ADRDEDEERGAILISLAYS------------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhhc--chhhhhhhccCCccc--ccccchhhccceeeeeccC-------------------
Confidence 88899999999998888765432 223445443333110 0112234567766666441
Q ss_pred hhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC---C
Q 004297 353 AKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP---C 424 (763)
Q Consensus 353 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~ 424 (763)
....-+.|.+++|..|..+ |.+|.+||||...+.. .+.+|.+.+++++|.||++|.|.+... .
T Consensus 230 ------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~ 300 (362)
T KOG1013|consen 230 ------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAY 300 (362)
T ss_pred ------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhc
Confidence 2235778899999999988 6669999999998743 247999999999999999999988742 5
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
..+.|.|||++.-+ ..+++|-+...+...
T Consensus 301 ~kv~lsvgd~~~G~--------s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 301 KKVALSVGDYDIGK--------SNDSIGGSMLGGYRR 329 (362)
T ss_pred ceEEEeecccCCCc--------CccCCCccccccccc
Confidence 68999999988632 567888877655443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-13 Score=164.70 Aligned_cols=119 Identities=18% Similarity=0.331 Sum_probs=100.2
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCC-CceEEEEEEeCCCCC
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQ-SSVLEVTVKDKDFVK 112 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~~l~i~V~d~~~~~ 112 (763)
.-+|.|.|+|++|+||. +..+.+||||+++++++ +.||++++++.||+|||+|.|.++++. +..|.|+|||+|.++
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 45799999999999998 44689999999999975 889999999999999999999997764 467999999999997
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceE---EEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGE---LMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~---i~l~~~~~ 162 (763)
++.||.++|++.++..+.. ...||+|.+...+ .|. |.+.+.+.
T Consensus 2055 kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k--~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNK--DGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCceEEEEHHHHhcCce-----eeeeeecCccccc--CCCcceEEEEEEec
Confidence 7799999999999997643 6789999964322 355 88876553
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=115.29 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=75.1
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeeeCCCCCCeeccEEEEEecCCC----CceEEEEEEeCCCC
Q 004297 42 VRVVKAKDLPPKDVTGSCDPYVEVKMGNY------KGTTRHFEKKTNPEWNQVFAFSKDRIQ----SSVLEVTVKDKDFV 111 (763)
Q Consensus 42 v~v~~a~~L~~~~~~~~~dPyv~v~~~~~------~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~~l~i~V~d~~~~ 111 (763)
+-.++|++|+..+..+.+||||++++.++ .++|++++++.||+|| +|.|...++. ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34679999999999999999999998653 4899999999999999 7888764332 57899999999998
Q ss_pred -CCeeeEEEEEEccccCCC
Q 004297 112 -KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~ 129 (763)
+|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 899999999999999844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-13 Score=141.59 Aligned_cols=128 Identities=28% Similarity=0.408 Sum_probs=103.4
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC-
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG- 439 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~- 439 (763)
...+.++|+.|+||.+. |..|++||||.+.+|..+.||+++...+||+|||.|.|++.+..+.|.+.|||+|.--.
T Consensus 294 sakitltvlcaqgl~ak---dktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAK---DKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ceeeEEeeeecccceec---ccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 36889999999999987 66699999999999999999999999999999999999999999999999999975210
Q ss_pred --CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 440 --GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 440 --~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
..+..+.+|+|||+..|.+..|.-.. .-||+|.....+.. ..|-|+|.+.+.
T Consensus 371 klrqkl~resddflgqtvievrtlsgem--dvwynlekrtdksa-vsgairlhisve 424 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHISVE 424 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecccch--hhhcchhhccchhh-ccceEEEEEEEE
Confidence 00014458999999999999986544 77999976544333 357776666543
|
|
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-12 Score=136.18 Aligned_cols=179 Identities=24% Similarity=0.399 Sum_probs=128.1
Q ss_pred CCchHHHHHHHhcCCCchhHHHHHHHHHHHHH---HHhhhhcccCCchhhHHHHHHHHHHHHcCch--h-HHHHHHHHHH
Q 004297 544 PPLRKEVVEYMLDVGSHMWSMRRILSGIIAVG---KWFDQICNWKNPITTVLIHILFIILVLYPEL--I-LPTVFLYLFL 617 (763)
Q Consensus 544 p~l~~~v~~~~l~~~~n~~r~~~~~~~~~~~~---~~l~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~-~p~~~l~~~~ 617 (763)
|+++..+.. .|+.++...+..++.++ +.+.++++|++|..|+.++++|+++|++|.+ + +|+++++ +.
T Consensus 1 p~lS~~ll~------~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll-~~ 73 (359)
T PF06398_consen 1 PPLSSPLLS------SNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLL-FG 73 (359)
T ss_pred CCcChHHHH------hChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 566666663 89999999998888888 9999999999999999999999999999998 3 5655543 45
Q ss_pred HHhhccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 004297 618 IGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSL-- 695 (763)
Q Consensus 618 ~~~~~y~~~~~~~~~~~~~~s~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l-- 695 (763)
+++..|..++..+...-.. +..+.+. ....++++...-..+..+++.+||.|+.+.+.++.+...
T Consensus 74 il~~~yl~~~p~~~~~~~~-------~~~~~~~------~~~~~ptl~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~ 140 (359)
T PF06398_consen 74 ILLPSYLYRHPSPTSSLPK-------SYEDHNP------EPSEGPTLDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLY 140 (359)
T ss_pred HHHHHHHeecCCCcccccc-------cccccCC------CcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666776665222210000 0000011 111111222113355678889999999999999999864
Q ss_pred --hcccCchhHHHHHHHHHHHHHHH----hhhhhhhhhhhhhhh-hccCCCcCC
Q 004297 696 --LSWRDPRATALFVIFCLIAAIVL----YVTPFQVVALLTGFY-VLRHPRFRH 742 (763)
Q Consensus 696 --~~w~~p~~t~~~~~~l~~~~~~l----~~vP~r~i~l~~g~~-~~~~p~~r~ 742 (763)
++|+++..|.+++++|+++.+.+ +++|+|++++++|.. .+.||..+.
T Consensus 141 ~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 141 PYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 57999999999888887777654 468999999999944 688998763
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-12 Score=107.82 Aligned_cols=81 Identities=38% Similarity=0.596 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|+|+|++|++|...+..+.+||||++++++ ..++|+++.++.||.|||+|.|.+.......|.|+|||.+.. ++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999988 569999999999999999999998655666799999999998 6999
Q ss_pred eEEEE
Q 004297 116 MGRVL 120 (763)
Q Consensus 116 lG~~~ 120 (763)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=133.24 Aligned_cols=242 Identities=20% Similarity=0.227 Sum_probs=160.1
Q ss_pred EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCC----CCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004297 232 QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAP----NKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307 (763)
Q Consensus 232 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 307 (763)
+..+|..+.+ .+||.|.+.|...+.....+.+++.++|.+.. ...+++|++...++++..... ...-..++
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 4468888887 99999999999999888899999999997653 467899999999998874311 11111121
Q ss_pred cccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCC
Q 004297 308 KHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTD 387 (763)
Q Consensus 308 ~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~D 387 (763)
.. .....|.|.+.+.- .. ....+.+ -..+|.+|.+. |..+++|
T Consensus 116 ~~---------~~~~~g~iti~aee--~~----------------------~~~~~~~-~~~~~~~ld~k---d~f~ksd 158 (529)
T KOG1327|consen 116 PG---------KNAGSGTITISAEE--DE----------------------SDNDVVQ-FSFRAKNLDPK---DFFSKSD 158 (529)
T ss_pred cC---------ccCCcccEEEEeec--cc----------------------ccCceee-eeeeeeecCcc---cccccCC
Confidence 11 11224555444321 10 0001222 34558889765 7889999
Q ss_pred cEEEEE--ECC-EE---EeeeeecCCCCCccccEEEEEee-----CCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEE
Q 004297 388 AYCVAK--YGQ-KW---VRTRTIIDSPTPKWNEQYTWEVF-----DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRI 456 (763)
Q Consensus 388 pyv~v~--~~~-~~---~~T~~~~~t~~P~wne~~~~~v~-----~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i 456 (763)
||..+. ++. .+ ++|.+++++++|.|.+ |.++.. ++...+.+.+||++..+ ++++||++..
T Consensus 159 ~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~--------~~~~ig~~~t 229 (529)
T KOG1327|consen 159 PYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG--------KHDLIGKFQT 229 (529)
T ss_pred cceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC--------CcCceeEecc
Confidence 999883 323 22 7999999999999984 443333 45678999999999865 7899999999
Q ss_pred ecccccCCCeEeeeEeeeeeCCCCcc----cceEEEEEEEEeecc------------------hhHHHhhcCCCCCccc-
Q 004297 457 RLSTLETDRVYTHSYPLLVLYPNGVK----KMGEIHLAVRFTCSS------------------LLNMMHMYSQPLLPKM- 513 (763)
Q Consensus 457 ~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l~~~~~~~~------------------~~~~~~~~~~p~~p~~- 513 (763)
++.++.... ....+++.+...+..+ ..|.+.+. .|+... ..++.++++.|..|.|
T Consensus 230 t~~~~~~~~-~~~~~~~~~~~~~~~~k~~k~~g~~~l~-~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSL 307 (529)
T KOG1327|consen 230 TLSELQEPG-SPNQIMLINPKKKAKKKSYKNSGQLILD-RFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSL 307 (529)
T ss_pred cHHHhcccC-CcccccccChhhhhhhhcccccceEEeh-heeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcc
Confidence 999996411 1223444332221111 13554432 222221 3344588999999999
Q ss_pred cccCCCChhHHHH
Q 004297 514 HYLHPLTVSQLDS 526 (763)
Q Consensus 514 ~~~~p~~~~q~~~ 526 (763)
||++|..+++|+.
T Consensus 308 Hyi~p~~~N~Y~~ 320 (529)
T KOG1327|consen 308 HYIDPHQPNPYEQ 320 (529)
T ss_pred eecCCCCCCHHHH
Confidence 9999999999985
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-13 Score=148.70 Aligned_cols=90 Identities=24% Similarity=0.405 Sum_probs=80.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE--EeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCC
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW--VRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~ 436 (763)
-.-.++|+|.+|.+|.+. |++|.+|||+++.+|++. -+++.+.+|+||+|++.|++.+..| ...++++|||+|.
T Consensus 611 i~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred ceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 345788999999999987 888999999999999988 4677788999999999999999987 6689999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEeccc
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
.+ +|+.||...|+|..
T Consensus 688 ~~--------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EA--------QDEKIGETTIDLEN 703 (1105)
T ss_pred cc--------ccchhhceehhhhh
Confidence 76 89999999999985
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-12 Score=136.26 Aligned_cols=120 Identities=31% Similarity=0.576 Sum_probs=103.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-------
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV------- 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~------- 111 (763)
.++++|+.|.+|.+.|.+|++||||.+.++..+.+|+++.+.+||+|||.|.|...+ ..+.+.+.|||.|..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999876 478999999998761
Q ss_pred -----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEcccCC
Q 004297 112 -----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQAD 166 (763)
Q Consensus 112 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~~d 166 (763)
+|||+|+..|.+..|... .+.||.|+.+..+ .+.|.|.+.+.+...+.
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 789999999999988754 5789999987643 46788888776654433
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=103.79 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=75.0
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCc
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDE 278 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~ 278 (763)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.+ +.+|.|+|.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 7799999887 899999999999987777778999999999998899
Q ss_pred eeEEEE
Q 004297 279 VLGKCM 284 (763)
Q Consensus 279 ~iG~~~ 284 (763)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=106.87 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=77.9
Q ss_pred eEEEEEEEccCCCCCccCCCCC--CCCcEEEEEECC---EEEeeeeecCCCC--CccccEEEEEeeCC------------
Q 004297 363 VLELGILNAQGLMPMKTKDGRG--TTDAYCVAKYGQ---KWVRTRTIIDSPT--PKWNEQYTWEVFDP------------ 423 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g--~~Dpyv~v~~~~---~~~~T~~~~~t~~--P~wne~~~~~v~~~------------ 423 (763)
.|+|.|.+|+|++..+. +..| .+||||++.+.+ ...+|.++++++| |+||+.|.|++..+
T Consensus 1 eLRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 37899999999776433 2234 599999998854 5689999999999 99999999887641
Q ss_pred ------------CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCC
Q 004297 424 ------------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 424 ------------~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
...|.|+|||+|.++ +|++||.+.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s--------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS--------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC--------CCCcceEEEEEhhhccccc
Confidence 357999999999987 8999999999999987664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=131.99 Aligned_cols=127 Identities=19% Similarity=0.261 Sum_probs=106.5
Q ss_pred ceEEEEEEEccCCCCCcc---------------CCCCCCCCcEEEEEECCEE-EeeeeecCC-CCCccccEEEEEeeCCC
Q 004297 362 GVLELGILNAQGLMPMKT---------------KDGRGTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPC 424 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~---------------~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~~~v~~~~ 424 (763)
|.|.++|++|++|++++. ..+.+.+||||.|.+++.+ .||+++.+. .||+|||.|.++|..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999986310 1224678999999998876 699999884 69999999999999999
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeecc
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 497 (763)
..++|.|-|.|.++ ..+||++.||+.+|..|..+.+|+++.+...+..+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g---------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG---------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC---------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999885 46999999999999999999999999876544333334899999998753
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=101.51 Aligned_cols=99 Identities=27% Similarity=0.506 Sum_probs=85.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-EEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~~~~~~ 441 (763)
|.|.|++|++|... ...+..||||++.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999864 3346799999999988 88999999999999999999999998 6788999999988754
Q ss_pred CCCCCCCCccEEEEEeccccc-CCCeEeeeEee
Q 004297 442 KAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPL 473 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~-~~~~~~~~~~L 473 (763)
.+.+||++.+++.++. .+.....|++|
T Consensus 75 -----~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -----KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -----CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6789999999999998 66666777764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-10 Score=98.07 Aligned_cols=99 Identities=40% Similarity=0.655 Sum_probs=84.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeeeE
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMG 117 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~lG 117 (763)
|.|+|++|++|......+.++|||.+.+.+ ...+|+++.++.||.|||.|.|.+.......+.|+||+.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998766677899999999998 888999999999999999999999764578899999999987 689999
Q ss_pred EEEEEccccC-CCCCCCCCCcCeEEEe
Q 004297 118 RVLFDLNEIP-KRVPPDSPLAPQWYRL 143 (763)
Q Consensus 118 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 143 (763)
.+.+++.++. .. ....+|++|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSG-----KEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcC-----CcCcceecC
Confidence 9999999988 22 224567654
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=98.75 Aligned_cols=92 Identities=30% Similarity=0.504 Sum_probs=79.4
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE---EEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---WVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHLH 438 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~---~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~~ 438 (763)
.+.|.|++|+||... ...+..+|||++.+++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 1 ~l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 367899999999865 22357899999999765 79999999999999999999999987 889999999988654
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCC
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
.+.++|.+.+++.++..+.
T Consensus 78 --------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 --------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred --------CCceeEEEEEEHHHcccCc
Confidence 6889999999999987665
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-10 Score=97.29 Aligned_cols=91 Identities=36% Similarity=0.632 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCee
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY---KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~ 115 (763)
|.|+|++|++|......+..+|||++++.+. ..+|+.+.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999988776578899999999875 78999999999999999999999775578999999999887 6999
Q ss_pred eEEEEEEccccCCCC
Q 004297 116 MGRVLFDLNEIPKRV 130 (763)
Q Consensus 116 lG~~~i~l~~l~~~~ 130 (763)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987653
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=118.17 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 38 QYLYVRVVKAKDLPPK-----DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~-----~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
..|.|+|+.|++++.. +.....||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987511 2234679999999976 35678877889999999999999987777889999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEE
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (763)
+|.. +++|+|++.+++..|..+- ++++|.+..|... ...|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 8999999999999998763 5679998887653 3455555543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=98.54 Aligned_cols=91 Identities=30% Similarity=0.397 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeeeeCCCCC--CeeccEEEEEecC---------------
Q 004297 40 LYVRVVKAKDLPPKD--VTG--SCDPYVEVKMGN---YKGTTRHFEKKTN--PEWNQVFAFSKDR--------------- 95 (763)
Q Consensus 40 L~v~v~~a~~L~~~~--~~~--~~dPyv~v~~~~---~~~kT~~~~~t~n--P~Wne~f~f~v~~--------------- 95 (763)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+.++++| |.||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966443 355 499999999986 4689999999999 9999999988643
Q ss_pred --------CCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCC
Q 004297 96 --------IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRV 130 (763)
Q Consensus 96 --------~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~ 130 (763)
.....|.+.|||.|.+ +|+++|++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999998 8999999999999888653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=115.95 Aligned_cols=106 Identities=21% Similarity=0.292 Sum_probs=84.4
Q ss_pred cceEEEEEEEccCCCCC--ccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCCC-cEEEEEEE
Q 004297 361 IGVLELGILNAQGLMPM--KTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVF 432 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~--~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~V~ 432 (763)
...|.|+|+.|++++.. ++.+.....||||+|.+.| ...+|.+..++.||+|||.|.|++..|. ..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 36899999999998621 1112235689999998854 3467877777999999999999999874 57999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeC
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY 477 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~ 477 (763)
|+|..+ +|+++|+..+|++.|..|- ++.+|.+..
T Consensus 488 D~D~~~--------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 488 DYEVST--------ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred ecCCCC--------CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999765 7899999999999999984 677886544
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=114.63 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=101.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCcccc-EEEEEeeCC---CcEEEEEEEeCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNE-QYTWEVFDP---CTVITIGVFDNCHL 437 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne-~~~~~v~~~---~~~l~i~V~d~~~~ 437 (763)
|.|.|+|..|++|+.||++ ....|.||.+++++..++|.+-.+++||.||. -|.|+|.|. ...|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999999654 35689999999999999999999999999995 599999874 56899999999998
Q ss_pred CCCCCCCCCCCCccEEEEEeccccc----------CCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLE----------TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+ .++-||+|.|++..|. .|..+.+|+|+.+.- -| -+|+|.+-+++.
T Consensus 81 s--------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S--------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c--------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 7 7889999999999872 356789999997632 22 358998877764
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=119.44 Aligned_cols=122 Identities=19% Similarity=0.345 Sum_probs=101.8
Q ss_pred eeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeeeeeeCCC-CCCeeccEEEEEecCC
Q 004297 37 MQYLYVRVVKAKDLPPKD------------------VTGSCDPYVEVKMGNY-KGTTRHFEKK-TNPEWNQVFAFSKDRI 96 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~------------------~~~~~dPyv~v~~~~~-~~kT~~~~~t-~nP~Wne~f~f~v~~~ 96 (763)
.|.|.++|.+|++|+..+ ..+.+||||.|.+++. ..||+++.+. .||.|||+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 378999999999998531 1357899999999985 6799999874 6999999999998764
Q ss_pred CCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccc--eEEEEEEEEccc
Q 004297 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR--GELMLAVWMGTQ 164 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~ 164 (763)
...+.|.|.|.+.++..+||.+.+++.++..+.. ...||++.+..|+... ..|+++++|.+.
T Consensus 87 -~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 -ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred -cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4789999999999988899999999999987643 6789999998876433 488889888764
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-09 Score=116.69 Aligned_cols=116 Identities=25% Similarity=0.402 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~------~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999987532 1123459999999965 5679999999999999999999987766778999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEE
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (763)
|+|.. +++++|++.+++..|..+. +|++|.+..|... ...|.+.+++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987 8999999999999998762 5899998877642 2344444443
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.5e-09 Score=115.35 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=91.9
Q ss_pred cceEEEEEEEccCCCCCc---cCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMK---TKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~---~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V 431 (763)
...|.|.|+.|++|+.-. ..+.....||||+|.+-| ...+|+++.++.||+|||.|.|++..| -..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 368999999999985311 112234469999998733 457999999999999999999999876 45799999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+|+|..+ .|+++|+..||+..|..|- +|++|.+.. |. ..+...|-++|.
T Consensus 549 ~D~D~~~--------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE--------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC--------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998765 7899999999999999995 589996533 32 234555555553
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=90.02 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=73.2
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCee
Q 004297 40 LYVRVVKAKDLPPKD---VTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDF 115 (763)
Q Consensus 40 L~v~v~~a~~L~~~~---~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~ 115 (763)
|.|+|..|+|+...+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+.+.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 579999999998776 5788999999999995 889987 4899999999999963 678999999997766778
Q ss_pred eEEEEEEccccCCC
Q 004297 116 MGRVLFDLNEIPKR 129 (763)
Q Consensus 116 lG~~~i~l~~l~~~ 129 (763)
+|..-+.+++|...
T Consensus 76 i~llW~~~sdi~Ee 89 (109)
T cd08689 76 VGLLWLRLSDIAEE 89 (109)
T ss_pred eeeehhhHHHHHHH
Confidence 89999988888743
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-10 Score=123.89 Aligned_cols=125 Identities=32% Similarity=0.574 Sum_probs=105.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeeeCCCCC
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------------Y------------------KGTTRHFEKKTN 82 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~------------------~~kT~~~~~t~n 82 (763)
..|.+.|.|.+.+|++|.++|.+|.+|||+...+.. + .+-|.+.++|+|
T Consensus 110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLn 189 (1103)
T KOG1328|consen 110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLN 189 (1103)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCC
Confidence 356677889999999999999999999999887722 0 123778899999
Q ss_pred CeeccEEEEEecCCCCceEEEEEEeCCC---------------------------------C----CCeeeEEEEEEccc
Q 004297 83 PEWNQVFAFSKDRIQSSVLEVTVKDKDF---------------------------------V----KDDFMGRVLFDLNE 125 (763)
Q Consensus 83 P~Wne~f~f~v~~~~~~~l~i~V~d~~~---------------------------------~----~d~~lG~~~i~l~~ 125 (763)
|.|+|.|.|.+++.+.+.+-+.+||+|. . .|||+|++.|+|++
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999999999999999999843 1 48999999999999
Q ss_pred cCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEccc
Q 004297 126 IPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGTQ 164 (763)
Q Consensus 126 l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~~ 164 (763)
+... ...+||+|+.++.+ +++|.+++.+|+.+.
T Consensus 270 iP~~------Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 270 IPPD------GLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred CCcc------hHHHHhccCcccccccccceEEEEEEEeee
Confidence 9854 37899999998754 589999999999763
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=113.55 Aligned_cols=116 Identities=26% Similarity=0.334 Sum_probs=93.5
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLPPK------DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~------~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
..|.|+|+.|.+++.. +.....||||+|.+-+ .+.+|++..++.||+|||+|.|.+..++-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987421 2234579999999965 3578998899999999999999987777789999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEE
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWM 161 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~ 161 (763)
|+|.. +|+|+|+..+++..|..+- +.++|.+..|... ...|.+.+++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99987 8999999999999998763 4568998887652 3466666654
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.9e-09 Score=86.45 Aligned_cols=86 Identities=21% Similarity=0.320 Sum_probs=71.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCC
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDK 442 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~ 442 (763)
|.|.|..|+|+....+....+.+||||.+++++. .+||++ +.||.|||.|.|+| +...++.+.|||...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~~----- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD----- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCCC-----
Confidence 5789999999987643224677999999999987 799998 48999999999999 5688999999997431
Q ss_pred CCCCCCCccEEEEEeccccc
Q 004297 443 AGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 443 ~~~~~d~~lG~v~i~l~~l~ 462 (763)
..-.||-.-|.+++|.
T Consensus 72 ----~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 ----QPVPVGLLWLRLSDIA 87 (109)
T ss_pred ----eecceeeehhhHHHHH
Confidence 5678999999999984
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-08 Score=105.18 Aligned_cols=208 Identities=18% Similarity=0.324 Sum_probs=121.2
Q ss_pred CchHHHHHHHhcCCCchhHHHH-HHHHHHHHHHHhhhhcccCCchhhHHHHHHHHHHHHcCchhHHHHHHHHHHHHh---
Q 004297 545 PLRKEVVEYMLDVGSHMWSMRR-ILSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTVFLYLFLIGV--- 620 (763)
Q Consensus 545 ~l~~~v~~~~l~~~~n~~r~~~-~~~~~~~~~~~l~~~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~--- 620 (763)
.++.+-++ +|+.|+.. ++-.+..+.+.|.++.+|++|++|.+++++|++ +|+.+|++|+++..++.+.+
T Consensus 87 ~FspdkLR------a~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~ 159 (642)
T PF11696_consen 87 EFSPDKLR------ANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPP 159 (642)
T ss_pred cCChHHHH------HHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcc
Confidence 34555554 67777777 677888888999999999999999999999988 88889999888866544444
Q ss_pred -hccccCCCCCCCCCC-----------------CcCCC------CCC--------------------------CCCCCCc
Q 004297 621 -WYYRWRPRHPPHMDT-----------------RLSHA------DSA--------------------------HPDELDE 650 (763)
Q Consensus 621 -~~y~~~~~~~~~~~~-----------------~~s~~------~~~--------------------------~~~~~d~ 650 (763)
+.+.+.+..++..+. .+.++ |.+ .+++ ++
T Consensus 160 ~r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~-~~ 238 (642)
T PF11696_consen 160 ARSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDD-DP 238 (642)
T ss_pred cccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc-CC
Confidence 334443322211111 11111 100 0111 11
Q ss_pred cCCCC--CC------------------CCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHH----
Q 004297 651 EFDTF--PT------------------SRPSDIVRMR-YDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATA---- 705 (763)
Q Consensus 651 e~~~~--~~------------------~~~~~~~~~~-~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~t~---- 705 (763)
+.+.. ++ .......++- -.++-..+..++..++++++.-||+-|.|+=+-|+-..
T Consensus 239 ~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~Rl 318 (642)
T PF11696_consen 239 EEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRL 318 (642)
T ss_pred ccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHH
Confidence 10110 00 0001111211 22345567889999999999999999999887777431
Q ss_pred HHHHHHHHHHHHHhhhh----hhhhhhhhhhhhccCCCcC-------CCCCCch------hhhhhcCCCCcc
Q 004297 706 LFVIFCLIAAIVLYVTP----FQVVALLTGFYVLRHPRFR-------HKLPSVP------LNFFRRLPARTD 760 (763)
Q Consensus 706 ~~~~~l~~~~~~l~~vP----~r~i~l~~g~~~~~~p~~r-------~~~p~~~------~~~~~r~ps~~~ 760 (763)
.+..+++-++++.+|++ .|.+-++.|+-|+.-|-++ .++|+.- ..+|+.||+|+-
T Consensus 319 RLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQ 390 (642)
T PF11696_consen 319 RLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQ 390 (642)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHH
Confidence 11222222222333333 5555566676677766433 4455532 346899998863
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=110.35 Aligned_cols=121 Identities=16% Similarity=0.228 Sum_probs=89.9
Q ss_pred cceEEEEEEEccCCCCCcc---CCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~---~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V 431 (763)
...|.|+|+.+++++.... .+.....||||+|.+-| ...+|+++.++.||+|||.|.|++.-| -..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999999753211 12334579999998733 347899888999999999999999987 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|+|..+ +|+++|+..||+..|..|- +..+|.+..+... ..-++.+.+.|
T Consensus 548 ~d~d~~~--------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l-~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE--------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKY-SSTRLLMRFEF 597 (598)
T ss_pred EECCCCC--------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCC-CCCeeEEEEEe
Confidence 9998765 7899999999999999984 4678865432222 12345554443
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=109.53 Aligned_cols=115 Identities=25% Similarity=0.386 Sum_probs=91.5
Q ss_pred eEEEEEEEEeecCC--C----CCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEE
Q 004297 38 QYLYVRVVKAKDLP--P----KDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVK 106 (763)
Q Consensus 38 ~~L~v~v~~a~~L~--~----~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 106 (763)
..|.|+|+.|.++. . .+.....||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998753 1 12234679999999965 4678999999899999999999987777789999999
Q ss_pred eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccc-eEEEEEEE
Q 004297 107 DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR-GELMLAVW 160 (763)
Q Consensus 107 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~ 160 (763)
|+|.. +++|+|++.+++..|..+- +.++|.+..|.... ..+.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEE
Confidence 99886 8999999999999998763 45689888876533 45555544
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-08 Score=108.36 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=89.6
Q ss_pred cceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEE
Q 004297 361 IGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~---~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V 431 (763)
...|.|+|+.|++++. ....+.....||||+|.+.| ...+|+++.++.||.|||.|.|.+..| -..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3679999999998531 11112344689999998843 357999999999999999999999887 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
+|+|..+ .|+++|+..||+..|..|- +..+|.+..+... ..-++.+.+.|
T Consensus 531 ~d~D~~~--------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE--------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEF 580 (581)
T ss_pred EECCCCC--------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEe
Confidence 9998765 7889999999999999984 4678865432222 22345554443
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-08 Score=108.20 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=92.6
Q ss_pred cceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCcc-ccEEEEEeeCC-CcEEEEE
Q 004297 361 IGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKW-NEQYTWEVFDP-CTVITIG 430 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~---~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~w-ne~~~~~v~~~-~~~l~i~ 430 (763)
...|.|+|+.|++|+. .+..+.....||||+|.+.| ..++|+++.++.||.| ||.|.|.+..| -..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999999731 11112334589999998733 3579999988999999 99999999887 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|+|+|..+ .|+++|+..|++..|..|- +..+|.+..+... ...+|.+.+.+..
T Consensus 510 V~D~d~~~--------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDT--------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCC--------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 99998765 7899999999999998884 4678855432222 2356777777654
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-08 Score=108.56 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=95.2
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCee-ccEEEEEecCCCCceEEEEE
Q 004297 38 QYLYVRVVKAKDLPP---K---DVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEW-NQVFAFSKDRIQSSVLEVTV 105 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~---~---~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~l~i~V 105 (763)
..|.|+|+.|++|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 1 1233579999999965 3578999988899999 99999998777678999999
Q ss_pred EeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCcc-ceEEEEEEEEcc
Q 004297 106 KDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV-RGELMLAVWMGT 163 (763)
Q Consensus 106 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~G~i~l~~~~~~ 163 (763)
+|+|.. +++++|++.+++..|..+ -+.++|.+..|+.. .+.|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 999876 899999999999999865 24679999888764 456888777653
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=108.68 Aligned_cols=118 Identities=20% Similarity=0.339 Sum_probs=90.9
Q ss_pred eEEEEEEEccCCCCCccCC-CCCCCCcEEEEEECCE-----EEeeeeec-CCCCCccccEEEEEeeCC-CcEEEEEEEeC
Q 004297 363 VLELGILNAQGLMPMKTKD-GRGTTDAYCVAKYGQK-----WVRTRTII-DSPTPKWNEQYTWEVFDP-CTVITIGVFDN 434 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~-~~g~~Dpyv~v~~~~~-----~~~T~~~~-~t~~P~wne~~~~~v~~~-~~~l~i~V~d~ 434 (763)
.|.|.|+.++|+.+..... .+..+||||.|++.|- ..+|+++. ++-||.|+|.|+|++..| -.-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887642222 2356999999998553 37999555 688999999999999988 46789999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEE
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 493 (763)
|..+ +|+|+|+..||+..|.+|- +-.||.+.. |.. ..-+|.+.+.+
T Consensus 697 d~~~--------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~--G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG--------KDDFIGQTTLPVSELRQGY---RHVPLLSRE--GEALSSASLFVRIAI 743 (746)
T ss_pred CCCC--------cccccceeeccHHHhhCce---eeeeecCCC--CccccceeEEEEEEE
Confidence 9876 8999999999999999984 457776543 332 23456665555
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-08 Score=108.34 Aligned_cols=117 Identities=21% Similarity=0.417 Sum_probs=93.7
Q ss_pred eEEEEEEEEeecCCC-CCC---CCCCCcEEEEEECC-----eeeeeeee-CCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 38 QYLYVRVVKAKDLPP-KDV---TGSCDPYVEVKMGN-----YKGTTRHF-EKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~-~~~---~~~~dPyv~v~~~~-----~~~kT~~~-~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
.+|.|+|+.|.++.. .+. ...+||||.|++-| ...+|+++ .++-||.|+|+|.|.+..++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 379999999996643 222 35689999999976 36789955 778899999999999988778899999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEc
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (763)
+|.. +|+|+|+.++++..|..+- +-++|.+..|+. ....|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9998 8999999999999998763 345888887764 345666666553
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-08 Score=104.47 Aligned_cols=124 Identities=28% Similarity=0.466 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeeeeeeeeCCCCCCeec-cEEEEEec--CCCCceEEEEEEeCCCC-C
Q 004297 38 QYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGNYKGTTRHFEKKTNPEWN-QVFAFSKD--RIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wn-e~f~f~v~--~~~~~~l~i~V~d~~~~-~ 112 (763)
|.|.|+|+.|++|+.+|.. ...|.||++++++..+||.+..+++||.|| +.|.|.++ ++++..|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 5788999999999999864 467999999999999999999999999999 55888884 56788999999999998 8
Q ss_pred CeeeEEEEEEccccCCCC-----CCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRV-----PPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~-----~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
+|-||.+.|++..|.... ...+.+...||++.+.-. ..+|+|.+-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEEe
Confidence 999999999999887542 122456678999988642 2578988766543
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-08 Score=87.23 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=82.8
Q ss_pred EEEEEEEccCCCCCccC------C----CCCCCCcEEEEEE----CCEEEeeeeecCCCCCccccEEEEEee--------
Q 004297 364 LELGILNAQGLMPMKTK------D----GRGTTDAYCVAKY----GQKWVRTRTIIDSPTPKWNEQYTWEVF-------- 421 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~------~----~~g~~Dpyv~v~~----~~~~~~T~~~~~t~~P~wne~~~~~v~-------- 421 (763)
|.|.|++|.||+++-++ + ..-..++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999863211 1 1223689999975 567899999999999999999999876
Q ss_pred CC--------CcEEEEEEEeCCCCCCCCC--CCCCCCCccEEEEEecccccCC-CeEeeeEee
Q 004297 422 DP--------CTVITIGVFDNCHLHGGDK--AGGARDSRIGKVRIRLSTLETD-RVYTHSYPL 473 (763)
Q Consensus 422 ~~--------~~~l~i~V~d~~~~~~~~~--~~~~~d~~lG~v~i~l~~l~~~-~~~~~~~~L 473 (763)
.. ..++.++||+.+..+.++. ....+|-.||.|.||+.+|... ..+++|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 3579999999887554431 1234788999999999998544 357899985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-07 Score=98.90 Aligned_cols=179 Identities=19% Similarity=0.215 Sum_probs=127.6
Q ss_pred eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
..+|.++.+.+||.|-+.|.....-...+.+++.++|.+.. ..+|+|++...+..+........ .|..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~-------~l~~ 114 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG-------PLLL 114 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh-------hhhc
Confidence 45899999999999999998876544578899999997763 67999999999999886532111 1111
Q ss_pred CCCC-ccceEEEEEEEEcccCCCCCCccccccccccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcE
Q 004297 146 RKGD-KVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVY 224 (763)
Q Consensus 146 ~~~~-~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpy 224 (763)
+.++ ...|+|.+.+.-.... .....-..+|++|..++..+++|||
T Consensus 115 ~~~~~~~~g~iti~aee~~~~----------------------------------~~~~~~~~~~~~ld~kd~f~ksd~~ 160 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEEDESD----------------------------------NDVVQFSFRAKNLDPKDFFSKSDPY 160 (529)
T ss_pred ccCccCCcccEEEEeeccccc----------------------------------CceeeeeeeeeecCcccccccCCcc
Confidence 1111 1246776654211000 0122233458999999999999999
Q ss_pred EEEEEC--C----EEEeeecccCCCCCccccceEEEEee----CCCCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q 004297 225 VKAQLG--N----QALRTRVSASRTINPMWNEDLMFVAA----EPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK 292 (763)
Q Consensus 225 v~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~~----~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 292 (763)
..+.-- . ..++|.++++ ++||.|.+. ..... ......+.+.+||++..+++++||++..++.++..
T Consensus 161 l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 161 LEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred eEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 988753 2 4688999887 999999863 33322 12246788999999999999999999999998863
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-08 Score=109.27 Aligned_cols=100 Identities=30% Similarity=0.554 Sum_probs=85.8
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeeCCCCCCeeccEEEEEecCC---
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-------KGTTRHFEKKTNPEWNQVFAFSKDRI--- 96 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~--- 96 (763)
+...|.... ..|.|.|+.|+++.+-|.+|.+||||+|.+++. .++|+++.+|+||+|+|+|+|.+...
T Consensus 938 vr~~y~~n~--q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~ 1015 (1103)
T KOG1328|consen 938 VRAYYNGNA--QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCS 1015 (1103)
T ss_pred EEEEeeccc--cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccc
Confidence 333444444 489999999999999999999999999999982 56899999999999999999998432
Q ss_pred -CCceEEEEEEeCCCC-CCeeeEEEEEEccccCC
Q 004297 97 -QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPK 128 (763)
Q Consensus 97 -~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 128 (763)
....|-|+|.|+|.. .+||-|++.+.|.++..
T Consensus 1016 te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1016 TETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 257899999999998 99999999999998874
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-08 Score=110.78 Aligned_cols=123 Identities=28% Similarity=0.417 Sum_probs=99.9
Q ss_pred CCCCCCcccCc-eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccE
Q 004297 15 PHLGGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQV 88 (763)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~ 88 (763)
|+...|.+++. +++++|. .+.|+|.|.-+++|+--+.+..+||||+.++.+ .+.||+++++|.||.|||.
T Consensus 1504 ps~~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1504 PSRNPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCCCccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhh
Confidence 44455666644 7777777 469999999999996555567889999999976 3678999999999999999
Q ss_pred EEEE---ecCCCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 89 FAFS---KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 89 f~f~---v~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
..+. .+.+....|.+.||..+.. .+.++|.+.++|.++....+ ...||.|...
T Consensus 1580 LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1580 LVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred eeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 8876 3445568899999999988 89999999999999887643 4589998754
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-07 Score=100.61 Aligned_cols=99 Identities=18% Similarity=0.312 Sum_probs=81.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEE-eeeeecCCCCCccc-cEEEEEeeCC-CcEEEEEEEe
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWV-RTRTIIDSPTPKWN-EQYTWEVFDP-CTVITIGVFD 433 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~-~T~~~~~t~~P~wn-e~~~~~v~~~-~~~l~i~V~d 433 (763)
-.|.|.|+.|+.|+. .++|-.-|||.|++-| ..+ +|.++.+++||+|| |.|+|++.+| -.-|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999984 4556677999997733 334 44455679999999 9999999998 5689999999
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 434 ~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+|.++ ...|||++..|+..+..|- +..||.+
T Consensus 1141 eDmfs--------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS--------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC--------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99997 4569999999999998883 5677755
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-07 Score=101.15 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=89.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eeeeeeCCCCCCeec-cEEEEEecCCCCceEEEEEEeCCCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YK-GTTRHFEKKTNPEWN-QVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~-~kT~~~~~t~nP~Wn-e~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
.|.|.|+.|+.|+... .+...|||+|.+-| .+ ++|.++.+++||+|| |+|.|.+..++-..|+|.|+|.|.+
T Consensus 1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 6889999999998543 46678999999966 24 455566899999999 9999999999899999999999999
Q ss_pred -CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEc
Q 004297 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (763)
...|||++++++..+..+- +-.+|.+.-.++ ....+++.+...
T Consensus 1145 s~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred CCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEec
Confidence 5579999999999998663 234777654332 234555555444
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.51 E-value=7e-07 Score=101.45 Aligned_cols=119 Identities=22% Similarity=0.293 Sum_probs=90.9
Q ss_pred ceEEEEEEEccCCCCC-c--cCCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCC-cEEEEEEEeCCC
Q 004297 362 GVLELGILNAQGLMPM-K--TKDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPC-TVITIGVFDNCH 436 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~-~--~~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~V~d~~~ 436 (763)
|.|.++|++|+-+... . ..-+.+ .||||.|.+++.+ .|| .+..||+|||.|.++|..+. ..++|.|-|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 8899999999733211 0 000122 3999999998876 588 55669999999999999876 7899999982
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCCe-EeeeEeeeeeCCCCcccceEEEEEEEEeecch
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRV-YTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSL 498 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~~ 498 (763)
-.+||++.||+.+|..|.. +++|+++.+...+.. +..+|+++++|.+...
T Consensus 84 -----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 84 -----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAEL 134 (758)
T ss_pred -----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhh
Confidence 3599999999999999865 899999987554333 2258999999987643
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00013 Score=76.48 Aligned_cols=243 Identities=19% Similarity=0.252 Sum_probs=158.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEec-------CCCCceEEEEEEeCCCC-
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-------RIQSSVLEVTVKDKDFV- 111 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-------~~~~~~l~i~V~d~~~~- 111 (763)
+.|+|++|++++... ...-.+..+++++...|..+..+..|.||....|.++ ..+...|++++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 3466899999999999999999999999999999874 33567899999999833
Q ss_pred -CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC--CccceEEEEEEEEcccCCCCCC--c--ccccccccccc--
Q 004297 112 -KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFP--E--AWHSDAATVTG-- 182 (763)
Q Consensus 112 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~--~--~~~~~~~~~~~-- 182 (763)
+.+.+|.+.++|.........+......||+|...++ ++.+-+|.+.+.+......... . .+.. .+....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~-~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKP-APPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccC-CCcccCCC
Confidence 8899999999999882111112345789999998743 2346788888877654331000 0 0000 000000
Q ss_pred cc---cccc------cc-----ccccc---cCceeEEEEEEEEccccCCCCC----C--CCCCcEEEEEECCEEEeeecc
Q 004297 183 IE---GLAN------IR-----SKVYL---SPKLWYLRVNVIEAQDLQPTDK----G--RFPEVYVKAQLGNQALRTRVS 239 (763)
Q Consensus 183 ~~---~~~~------~~-----~~~~~---~p~~g~L~V~i~~a~~L~~~~~----~--~~~dpyv~v~l~~~~~kT~~~ 239 (763)
.. .... .. -++.. -.....|.|++..|++|...-. . +....|....+-+....|..-
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 00 0000 00 00111 1235689999999999976621 1 234667777777776666665
Q ss_pred cCCCCCcccc-ceEE-EEeeCC---------CCCeEEEEEEEccCCCCCceeEEEEEecccccc
Q 004297 240 ASRTINPMWN-EDLM-FVAAEP---------FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK 292 (763)
Q Consensus 240 ~~~t~nP~wn-e~f~-f~~~~~---------~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 292 (763)
.. ..+|.|. |.-. +.+... ....|.|.++. .+..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 54 7777664 2223 544321 23467777766 46789999999999874
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.6e-06 Score=95.74 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 38 QYLYVRVVKAKDLPPK----DVT-GSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~----~~~-~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
|.|.++|.+|+-+... +.. ...||||.|.+++. ..|| .+..||.|||+|.+.+.......+.|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7899999999843221 111 12399999999984 5678 556699999999999976544679999998
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccce-EEEEEEEEcccC
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG-ELMLAVWMGTQA 165 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G-~i~l~~~~~~~~ 165 (763)
+..+||.+.+++.++..+. .....||++.+..|+...| .|+++++|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 4689999999999998763 2267899999988765455 888999887643
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.8e-07 Score=102.86 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=84.0
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEee---CC-CcEEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVF---DP-CTVITIGVF 432 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~---~~-~~~l~i~V~ 432 (763)
|.|.|.|..|+||+-. ..+..+||||+..+-. .+.||+++.+|.||.|||...+.-. .. ..+|.+.||
T Consensus 1524 ~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred ceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 8999999999999654 2345699999998833 2479999999999999998776522 12 478999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
..+.+. .+.++|.+.|+|.++.-.+...+||+|.
T Consensus 1601 s~~~~~--------en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1601 SNGGLL--------ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccccee--------eeeeeeeeecchhhcchhhhhcceeecc
Confidence 998775 7889999999999998777677999993
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0023 Score=67.29 Aligned_cols=238 Identities=15% Similarity=0.214 Sum_probs=156.8
Q ss_pred EEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeC-------CCCCeEEEEEEEcc-C
Q 004297 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAE-------PFEEHLILTVEDRV-A 273 (763)
Q Consensus 202 L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~L~i~V~d~d-~ 273 (763)
+.|.|++|++.+... .-.-.|..+++++...|..+.. +..|.||....+.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998773 2467889999999999998877 9999999999998742 23558999999988 5
Q ss_pred CCCCceeEEEEEecccc-ccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCC---------Cc
Q 004297 274 PNKDEVLGKCMIPLQYV-DKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDE---------ST 343 (763)
Q Consensus 274 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~---------~~ 343 (763)
.+..+.||.+.++|..+ ...........+||+|-.... +-.+.+-++.+.+++.......+. .+
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~------~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS------KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc------ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 56788999999999988 111122346789999987521 112234567777776543321000 01
Q ss_pred ccCC-------CCCcch--hhh-------------ccCCcceEEEEEEEccCCCCCccC---CCCCCCCcEEEEEECCEE
Q 004297 344 HYSS-------DLRPTA--KQL-------------WKSSIGVLELGILNAQGLMPMKTK---DGRGTTDAYCVAKYGQKW 398 (763)
Q Consensus 344 ~~~~-------d~~~~~--~~~-------------~~~~~g~l~v~v~~a~~L~~~~~~---~~~g~~Dpyv~v~~~~~~ 398 (763)
...+ ...+.. ..+ .....-.|.|++..|+||..+-.. +..+.+..|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 1111 000100 000 012345788999999998765211 112335667777776667
Q ss_pred EeeeeecCCCCCccc-cEEE-EEeeC----------CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 399 VRTRTIIDSPTPKWN-EQYT-WEVFD----------PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 399 ~~T~~~~~t~~P~wn-e~~~-~~v~~----------~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
+.|..-+...+|.|- |... +.+.. ....|.|.++.. +..||.+.|++..+.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-------------~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-------------NQSLGSTSVPLQPLL 294 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-------------CcEEEEEEEEhhhcc
Confidence 888888888888774 3333 65552 134688888873 557999999999984
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.8e-05 Score=62.72 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=67.0
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEEE--C-CeeeeeeeeCCCCCCeeccEEEEEe--cCCCCceEEEEEEeCCCCCCe
Q 004297 41 YVRVVKAKDLPPKDVTG-SCDPYVEVKM--G-NYKGTTRHFEKKTNPEWNQVFAFSK--DRIQSSVLEVTVKDKDFVKDD 114 (763)
Q Consensus 41 ~v~v~~a~~L~~~~~~~-~~dPyv~v~~--~-~~~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~l~i~V~d~~~~~d~ 114 (763)
.|+|+.|++|......| .+.-|++=.+ . +..+||...++..||+|+|+|.|.+ ..+..-.|.|.|++.-. +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 58999999997654433 2333554333 2 2578999999999999999999987 45667889999999322 889
Q ss_pred eeEEEEEEccccCCC
Q 004297 115 FMGRVLFDLNEIPKR 129 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~ 129 (763)
.||.+++++.++-.+
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999988644
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.9e-05 Score=85.03 Aligned_cols=89 Identities=21% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEE-EECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVA-KYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCH 436 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v-~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~ 436 (763)
.-.|.+.+++++|+ | + ..|+|+.+ .+|.+.+||.+.++|+||+||+...|.|... ....++.|||.+.
T Consensus 51 ~~~~~~~~~~~~~~----~---~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----M---K---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----h---c---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 34589999999988 3 1 35888777 7788999999999999999999988888852 3346999999999
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCC
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDR 465 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~ 465 (763)
++ +++++|.++++|.++...+
T Consensus 121 ~s--------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 121 LS--------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CC--------HHHhhhheeecHhhccHHH
Confidence 87 8999999999999886543
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=62.84 Aligned_cols=100 Identities=28% Similarity=0.375 Sum_probs=73.4
Q ss_pred EEEEEEccccCCCC-----------C--CCCCCcEEEEEEC----CEEEeeecccCCCCCccccceEEEEee--------
Q 004297 203 RVNVIEAQDLQPTD-----------K--GRFPEVYVKAQLG----NQALRTRVSASRTINPMWNEDLMFVAA-------- 257 (763)
Q Consensus 203 ~V~i~~a~~L~~~~-----------~--~~~~dpyv~v~l~----~~~~kT~~~~~~t~nP~wne~f~f~~~-------- 257 (763)
.|.|++|.+|.... . .-.-++||++.+. ++..+|+++.+ +-.|.|+..++|++.
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCCC
Confidence 46677777775321 1 0125899999964 47788999987 999999999999875
Q ss_pred C-------CCCCeEEEEEEEccC----------CCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004297 258 E-------PFEEHLILTVEDRVA----------PNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306 (763)
Q Consensus 258 ~-------~~~~~L~i~V~d~d~----------~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L 306 (763)
+ .+...+.++||+... ..+|-.+|.+.||+.+|... +.+...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~---rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK---RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc---ccCccccccC
Confidence 1 124489999998653 23456899999999999863 5668899975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00014 Score=74.78 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=87.3
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-CCE----EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE-
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-GQK----WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF- 432 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-~~~----~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~- 432 (763)
...|.++|.|++|+||.... ..+..++|||+|.+ ++. ..+|+...+|++|-+.++..|.-.-+...|.+.||
T Consensus 266 d~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 45689999999999998742 22346999999966 433 36888889999998888888877777889999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCC-eEeeeEeeeeeC
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSYPLLVLY 477 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~-~~~~~~~L~~~~ 477 (763)
|+.++. .+.|+|.++|-+.+|.-.. ....||+|....
T Consensus 344 dygRmd--------~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGRMD--------HKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccccc--------hHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 554543 7899999999999997665 789999996543
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=75.77 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=91.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeeCCCCCCeeccEEEEEecC---CC--------CceEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFSKDR---IQ--------SSVLE 102 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~---~~--------~~~l~ 102 (763)
.|.+.|+++.+++........|-|+++.+- .++.+|.++++|.+|.|+|.|.+.+.. .+ .-.+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677889999988765544456789998873 267889999999999999999999854 11 24689
Q ss_pred EEEEeCCCC--CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 103 VTVKDKDFV--KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 103 i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
|++|++..+ +|.++|.+.+.|.-|..... ....++|.+.. +.+.|.+.+++.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~DGR-K~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKDGR-KAVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccc-----hhhceeccccc-cccCCeeEEEEEEe
Confidence 999999988 89999999999999886643 34556777632 23568888888765
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0003 Score=79.98 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=75.1
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcE-EEEEECCEEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCC
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVY-VKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPN 275 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpy-v~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~ 275 (763)
+-.|++.+++++|+ ++. .|+| +.+.+|.+.+||.+.++ |.||+||+...|.+.........|.|||.++++
T Consensus 51 ~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 44578999999997 322 3776 57788999999999987 999999999999887766666799999999999
Q ss_pred CCceeEEEEEeccccccc
Q 004297 276 KDEVLGKCMIPLQYVDKR 293 (763)
Q Consensus 276 ~d~~iG~~~i~l~~l~~~ 293 (763)
.++++|.|++++.++..+
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999999887643
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00037 Score=56.37 Aligned_cols=87 Identities=16% Similarity=0.385 Sum_probs=63.4
Q ss_pred EEEEEEccccCCCCC-CCCCCcEEEEEEC--C-EEEeeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccCCCC
Q 004297 203 RVNVIEAQDLQPTDK-GRFPEVYVKAQLG--N-QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVAPNK 276 (763)
Q Consensus 203 ~V~i~~a~~L~~~~~-~~~~dpyv~v~l~--~-~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~~~ 276 (763)
-|+++.++||.-... ...+.-|++--+. + -..||++.. +..||+|.|+|.|.+... .+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999864332 3345567765543 2 457777755 499999999999987543 34478888887 5678
Q ss_pred CceeEEEEEecccccc
Q 004297 277 DEVLGKCMIPLQYVDK 292 (763)
Q Consensus 277 d~~iG~~~i~l~~l~~ 292 (763)
.+.||.|.+.+.++..
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 8999999999998864
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00047 Score=71.46 Aligned_cols=120 Identities=23% Similarity=0.310 Sum_probs=93.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---C--CEEEeeeeecCCCCCccccEEEEEeeC-C-----------
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIIDSPTPKWNEQYTWEVFD-P----------- 423 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~~~v~~-~----------- 423 (763)
...|++.|.++.+++.. .+..-.|-|+++++ + .+..+|.+++.|.+|.|+|.|.+.+.. +
T Consensus 366 d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 35778888889988653 22334788999966 2 245789999999999999999998875 2
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEEe
Q 004297 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (763)
Q Consensus 424 ~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 494 (763)
..-+.|++|+...+. .+|.++|.+.|.|..|++.-.....|+|.+ |+| ..|++++.+++.
T Consensus 443 r~g~kfeifhkggf~-------rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFN-------RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccc-------cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 235899999986553 279999999999999998877888899975 443 368999988873
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00089 Score=68.99 Aligned_cols=112 Identities=24% Similarity=0.333 Sum_probs=89.1
Q ss_pred ecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVT 104 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~ 104 (763)
.++....|.|.|.|++|++|..... ...++|||+|++-+ .+.+|+...+|..|-+-+...|.-.. ....|.++
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEE
Confidence 3456778999999999999976532 34789999999965 36789999999999888888887654 57889999
Q ss_pred EEeC-CCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 105 VKDK-DFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 105 V~d~-~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
||.. .+. .+.|+|.+.+-+.+|.... ...-.||+|....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss 381 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS 381 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence 9974 444 7889999999999998763 2356899998764
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.023 Score=52.55 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=86.5
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcE--EEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--------------C
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAY--CVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------------C 424 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpy--v~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--------------~ 424 (763)
.-.|++.|.+++-...--. +..|..+.- +-+.+++++++|+.+.-+.+|.|+|.|-|++... +
T Consensus 8 ~~yL~l~vlgGkAFld~l~-~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQ-EPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhhh-ccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 3577888888775432000 111333444 4447799999999999999999999999988732 4
Q ss_pred cEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCe--EeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 425 TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRV--YTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 425 ~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~--~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+.+.+.|.-.|..+ ...++|.-.++...+..... ......|.+.........|.++++++..+
T Consensus 87 ~pihivli~~d~~~--------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 87 DPIHIVLIRTDPSG--------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CceEEEEEEecCCC--------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 57889888877654 45799999999999754332 24445565544433335799999998754
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.11 Score=48.83 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=73.6
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEec---CCCCceE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVL 101 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l 101 (763)
+|+++ .++|+|+++.++...+ .+|-||++.+ |++ ...|+.+.. .++.|||...|++. -+.+..|
T Consensus 4 wd~~~---~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL 76 (158)
T cd08398 4 WKINS---NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARL 76 (158)
T ss_pred eeCCC---CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheE
Confidence 45554 5889999999987643 4578888855 443 234555553 68999999999872 2347899
Q ss_pred EEEEEeCCCC-----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 102 EVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 102 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
.|.||+.... ....+|.+++.|-+... .| .+|...+.+|..+.
T Consensus 77 ~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~-------------~L-------r~G~~~L~lW~~~~ 124 (158)
T cd08398 77 CLSICSVKGRKGAKEEHCPLAWGNINLFDYTD-------------TL-------VSGKMALNLWPVPH 124 (158)
T ss_pred EEEEEEEecccCCCCceEEEEEEEEEEECCCC-------------hh-------hCCCEEEEEEcCCc
Confidence 9999997642 22468998888876331 11 14788888887543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.11 Score=48.17 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=84.9
Q ss_pred CceeEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCC-------------
Q 004297 35 EQMQYLYVRVVKAKDLPPKDV----TGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ------------- 97 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~----~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~------------- 97 (763)
+...+|+++|..++.+...-. ...+--.+-+.+++|.++|+.+..+.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 344589999999987754321 222333566667899999999999999999999999984321
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC--ccceEEEEEEEEcc
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD--KVRGELMLAVWMGT 163 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~G~i~l~~~~~~ 163 (763)
.+.+.+.|---+.. ...++|+-.++-..+....... ..--.+|....++ -..|-|.+++.+.+
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCCccceeEEEEEEEeec
Confidence 24677777666655 5589999999888777654210 1112234333222 25699998887765
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.093 Score=49.25 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=62.2
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEEE----eeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|+|++|.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEE
Confidence 4788999999998642 34788988854 66553 4444443 67999999888776 3 3 67999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
|+..... + .++....||.+.++|-+-
T Consensus 81 ~~~~~~~-~---~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 81 CSVKGRK-G---AKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEEeccc-C---CCCceEEEEEEEEEEECC
Confidence 9975321 0 011335799999999873
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.078 Score=50.75 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=71.9
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEe--c-CCCCceE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK--D-RIQSSVL 101 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v--~-~~~~~~l 101 (763)
.|+++ .++|+|+.+.++... ....+-||++.+ |++ ..+|+.+..+.++.|||.+.|++ . -+.+..|
T Consensus 4 w~~~~---~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArL 78 (173)
T cd08693 4 WDIEE---KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARL 78 (173)
T ss_pred eccCC---CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeE
Confidence 34544 589999999999862 234566777644 553 34666666567899999999986 2 3347899
Q ss_pred EEEEEeCCCC-----------------CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 102 EVTVKDKDFV-----------------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 102 ~i~V~d~~~~-----------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
.|.||+.... .+..||.+.+.|-+.. +.=.+|...+.+|..
T Consensus 79 citi~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~--------------------~~Lr~G~~~L~lW~~ 136 (173)
T cd08693 79 CFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK--------------------GQLKTGDHTLYMWTY 136 (173)
T ss_pred EEEEEEecccccccccccccccccccCcceEEEEEeEEEEccc--------------------chhhcCCeEEEecCC
Confidence 9999997542 1356777776666533 211247888888854
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.033 Score=63.46 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=74.4
Q ss_pred eEEEEEEEEccccCCCCCCCCCCcEEEEEECC-------EEEeeecccCCCCCccccce-EEEE-eeCCCCCeEEEEEEE
Q 004297 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-------QALRTRVSASRTINPMWNED-LMFV-AAEPFEEHLILTVED 270 (763)
Q Consensus 200 g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~~t~nP~wne~-f~f~-~~~~~~~~L~i~V~d 270 (763)
+.+.|+|++++-|..++. ..||.|.+-+ ..++|+++..++.||+|+|. |.|. +--|.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 468999999999987764 5899999864 56889998877999999966 7774 445556789999998
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccc
Q 004297 271 RVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309 (763)
Q Consensus 271 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 309 (763)
. ...+||+-.+++..+.. .-+.+.|...
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCC
Confidence 5 56799999999988853 4455566553
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.056 Score=50.04 Aligned_cols=41 Identities=15% Similarity=0.518 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCchhhHHHHHHHHHHHHc
Q 004297 563 SMRRILSGIIAVGKWFDQICNWKNPITTVLIHILFIILVLY 603 (763)
Q Consensus 563 r~~~~~~~~~~~~~~l~~~~~W~~p~~s~~~~~~~~~~~~~ 603 (763)
|+...+.-+-..+..++.+++|++|..|.++.++.++++.-
T Consensus 70 rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 70 RVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 44556888888999999999999999999998887776543
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.15 Score=48.88 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=64.6
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEEE----eeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|+|+.+.+|... ....+-||.+.+ |++.. .|+.+.-+.++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 4789999999999751 134677888744 77653 5555554567999999988776 3 3 67999999
Q ss_pred EeCCCCCCCCC--------CCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGGDK--------AGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~~~--------~~~~~d~~lG~v~i~l~~l 461 (763)
|+......+.+ ..++++..||.+.++|-+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 99754221111 0122457899999988763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.26 Score=46.41 Aligned_cols=92 Identities=23% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEeCCCC-CCeeeEEEEEEcccc
Q 004297 57 GSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (763)
Q Consensus 57 ~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (763)
..+|-||++.+ +++ ..+|..+.-+..+.|||...|++. -+.+..|.|+||+.+.. +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45678888865 443 236666666778899999999972 23478999999998765 677999999988764
Q ss_pred CCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCCCC
Q 004297 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQADEA 168 (763)
Q Consensus 127 ~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~ 168 (763)
. + .|. +|...+.+|....+|..
T Consensus 108 ~-g------------~Lr-------~G~~~l~lw~~~~~d~~ 129 (159)
T cd08397 108 D-G------------TLR-------RGRQKLRVWPDVEADGS 129 (159)
T ss_pred C-C------------cEe-------cCCEEEEEEeCCCCCCc
Confidence 2 1 122 48888999987766653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.3 Score=45.98 Aligned_cols=107 Identities=21% Similarity=0.355 Sum_probs=71.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEe---cCCCCceEEEEEEeCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK---DRIQSSVLEVTVKDKD 109 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v---~~~~~~~l~i~V~d~~ 109 (763)
.++|++....++...+ ....+-||++.+ |++ ...|.......++.|||...|++ +-+.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5778888888776521 234566776654 553 23444444447899999999986 2234789999999976
Q ss_pred CC---CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccCC
Q 004297 110 FV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQAD 166 (763)
Q Consensus 110 ~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d 166 (763)
.. ++..+|.++++|-+... .|. +|...+.+|-....+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------------~L~-------~G~~~l~lW~~~~~~ 127 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------------KLR-------QGMITLNLWPGKKTD 127 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------------cEe-------cCCEEEeccCCcccC
Confidence 54 35899999998877431 122 477888888654433
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.6 Score=40.23 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=77.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeeeee-CCCCCCeeccEEEEEec--------CCCCceEEEE
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK---GTTRHF-EKKTNPEWNQVFAFSKD--------RIQSSVLEVT 104 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~~~-~~t~nP~Wne~f~f~v~--------~~~~~~l~i~ 104 (763)
...+.|+|.+..+++. ....-+|+..-++.. .+|... ..+-.-.|||+|.+.+. ......+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3567899999998876 223446666656543 455544 33445789999998751 1345678899
Q ss_pred EEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEccc
Q 004297 105 VKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 105 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
|+..... +...+|.+.++|+++..... .....-++|... ......|.+++.+...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~--~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKC--KKSNATLSISISLSEL 137 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccC--CCCCcEEEEEEEEEEC
Confidence 9887543 33699999999999987531 113344566654 2345778888776543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1 Score=41.61 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=77.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE---Eeeeee-cCCCCCccccEEEEEee---CC------CcEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW---VRTRTI-IDSPTPKWNEQYTWEVF---DP------CTVIT 428 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~---~~T~~~-~~t~~P~wne~~~~~v~---~~------~~~l~ 428 (763)
-.+.|.|++..+++. ...--||+.+.|+.. ..|... ..+-.-.|||.|.+.+. +. ...++
T Consensus 7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 467889999998874 223456666666653 444433 34567899999998876 11 23688
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC--CeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
|.|+.....+ +...||++.|+|+++.+. .....-++|... .+....+++.+.+..
T Consensus 80 ~~v~~~~~~~--------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG--------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC--------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 9998874321 335899999999998763 566777888542 123467788777754
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.072 Score=60.87 Aligned_cols=85 Identities=20% Similarity=0.301 Sum_probs=66.0
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-------EEEeeeeecC-CCCCcccc-EEEEEe--eCCCcEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-------KWVRTRTIID-SPTPKWNE-QYTWEV--FDPCTVITI 429 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-------~~~~T~~~~~-t~~P~wne-~~~~~v--~~~~~~l~i 429 (763)
.+.+.|+|+.++=|-.+ +...||.|.+-| +.+||+++.+ +.||+|+| .|.|.- ...-..|+|
T Consensus 702 A~t~sV~VISgqFLSdr-------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR-------KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred EeeEEEEEEeeeecccc-------ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 47899999999988643 344799997733 3489998875 78999997 477742 233678999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCC
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD 464 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~ 464 (763)
.||++ ...+||+-.+++..|.+|
T Consensus 775 avyeE------------ggK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 775 AVYEE------------GGKFIGQRILPVDGLNAG 797 (1189)
T ss_pred eeecc------------CCceeeeeccchhcccCc
Confidence 99997 346999999999999887
|
|
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.0099 Score=56.96 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCcC
Q 004297 680 TVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFR 741 (763)
Q Consensus 680 ~~~~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~l~~vP~r~i~l~~g~~~~~~p~~r 741 (763)
.....++..+..++.++.|++|..|..++++|.+++.+..+++...++.+..+..+.=|.+.
T Consensus 88 ~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly 149 (169)
T PF02453_consen 88 SVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLY 149 (169)
T ss_dssp HCCCCCCHHHHHHHCCCHCT-TTGGG------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHH
Confidence 33445666788899999999999999999999999999998887766666444444445444
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.32 Score=45.79 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCCCcEEEEEE--CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEEEeCCCCCCCCCCCCCCCCccEE
Q 004297 384 GTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARDSRIGK 453 (763)
Q Consensus 384 g~~Dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~ 453 (763)
..+|-||.+.+ |++. .+|..+.-+..+.|||-++|++. + | ...|.|.|||.+..+ +...||.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--------~~~~vg~ 99 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--------KAVPFGG 99 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC--------CceEEEE
Confidence 35788888855 6654 36665655677899999988876 3 3 779999999986432 5678999
Q ss_pred EEEecccc
Q 004297 454 VRIRLSTL 461 (763)
Q Consensus 454 v~i~l~~l 461 (763)
+.++|-+-
T Consensus 100 ~~~~lFd~ 107 (159)
T cd08397 100 TTLSLFNK 107 (159)
T ss_pred EEEeeECC
Confidence 99998874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.63 Score=44.52 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=59.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE---EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW---VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVF 432 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~---~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V~ 432 (763)
..++|+|.++..+ .. +......-||.+.+ |++. .+|....-+.++.|||-++|++. | | ...|.|.||
T Consensus 10 ~~friki~~~~~~-~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDIP-VL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeeccc-Cc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 3677888888743 22 11122345666633 5554 36666656678999998888876 3 3 679999999
Q ss_pred eCCCCC-----CCC---CCCCCCCCccEEEEEecccc
Q 004297 433 DNCHLH-----GGD---KAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 433 d~~~~~-----~~~---~~~~~~d~~lG~v~i~l~~l 461 (763)
+..... .|. +..++.+..||.+.+.|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 86 CGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 974211 011 12223577889998888763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.56 Score=44.15 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=61.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|.|..+.++... .....+-||.+.+ |++. ..|.....+.++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 8 FNLRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred CCeEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence 3677888888887641 1234677777744 6653 24433333468999999999865 3 3 67999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
|+.+..+ . .++..||.+.++|-+-
T Consensus 84 ~~~~~~~--~----~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 84 YAVSEPG--S----KKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEEecCC--C----CcceEEEEEeEEeEcc
Confidence 9976421 0 1467999999999874
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.3 Score=36.72 Aligned_cols=64 Identities=25% Similarity=0.412 Sum_probs=50.2
Q ss_pred CCcEEEEEECC-eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeeeEEEEEEccccC
Q 004297 59 CDPYVEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIP 127 (763)
Q Consensus 59 ~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~ 127 (763)
++-.+++++++ ...+|.-.. -.+..|++.|.+.++. +..|+|.||=+|. ..+.|...+.|++..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 58889999988 566776543 3578999999999986 6789999988765 467777888888844
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.34 Score=49.00 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~ 437 (763)
...|.|.++++.++||.-... ..+-..+-||++.++.+ ..||.+......-.|.|.|...+.. ..++.+-||.|+.-
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 345999999999999975422 12335789999998765 4677777677777889999988775 45788888888753
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.3 Score=40.76 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred eecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---eeeeeeeCCCCCCeeccEEEEEec---CCCCceE
Q 004297 30 TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY---KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVL 101 (763)
Q Consensus 30 ~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~---~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l 101 (763)
.+|+.. .++|+|.++.++.. +......-||++.+ |++ ..+|.....+.++.|||.+.|++. -+....|
T Consensus 5 lwdi~~---~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arL 80 (178)
T cd08399 5 LWDCDR---KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALL 80 (178)
T ss_pred eEecCC---CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEE
Confidence 355554 47788888874432 22222345666533 443 235666666778999999999872 3347899
Q ss_pred EEEEEeCCC
Q 004297 102 EVTVKDKDF 110 (763)
Q Consensus 102 ~i~V~d~~~ 110 (763)
.|.||+...
T Consensus 81 c~ti~~~~~ 89 (178)
T cd08399 81 NLQIYCGKA 89 (178)
T ss_pred EEEEEEEec
Confidence 999999743
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.2 Score=42.56 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=70.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeeeC----CCCCCeeccEEEEEec---CCCCceEEEEE
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYK----GTTRHFE----KKTNPEWNQVFAFSKD---RIQSSVLEVTV 105 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~~----~kT~~~~----~t~nP~Wne~f~f~v~---~~~~~~l~i~V 105 (763)
.+.|+|..+.+++........|-||.+.+ |++. ..|+... -...+.|||.+.|++. -+.+..|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68899999999987654445778888755 5532 2444321 1335779999999872 23478999999
Q ss_pred EeCCCC----------CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 106 KDKDFV----------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 106 ~d~~~~----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
|+.... ++..||.+++.|-+.. |.-.+|...+.+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~L~~G~~~L~lW~~~ 136 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GVLRQGSLLLGLWPPS 136 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcch--------------------hhhccCCEEEEeccCC
Confidence 997653 2467787777776643 1112478888888654
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.3 Score=39.22 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred eeeeeCCC-CCCeeccEEEEEe---cCCCCceEEEEEEeCCCC-CC----eeeEEEEEEccccCCCCCCCCCCcCeEEEe
Q 004297 73 TTRHFEKK-TNPEWNQVFAFSK---DRIQSSVLEVTVKDKDFV-KD----DFMGRVLFDLNEIPKRVPPDSPLAPQWYRL 143 (763)
Q Consensus 73 kT~~~~~t-~nP~Wne~f~f~v---~~~~~~~l~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 143 (763)
.|+....+ .++.|||.+.|++ +-+.+..|.|.||+.+.. .. ..||.+.+.|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56666555 7999999999986 234578999999998776 33 6999999998876321 2
Q ss_pred ecCCCCccceEEEEEEEEcccCC
Q 004297 144 EDRKGDKVRGELMLAVWMGTQAD 166 (763)
Q Consensus 144 ~~~~~~~~~G~i~l~~~~~~~~d 166 (763)
.+|...+.+|-....+
T Consensus 90 -------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 -------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------EEEEEEEE-EET-TTS
T ss_pred -------cCCCEEEEEEcCCCCc
Confidence 2488999988765443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.17 E-value=1 Score=43.17 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=62.4
Q ss_pred EEEEEEEEccccCCCCCCCCCCcEEEEEE--CCEEE----eeeccc--C-CCCCccccceEEEEee---CCCCCeEEEEE
Q 004297 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQAL----RTRVSA--S-RTINPMWNEDLMFVAA---EPFEEHLILTV 268 (763)
Q Consensus 201 ~L~V~i~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~L~i~V 268 (763)
.+.|+|..+.+++........|-||.+.+ |++.. .|+... + -...+.|||...|++. -|.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999987765555788887754 55432 343211 1 1235779999999863 34567999999
Q ss_pred EEccCCC---------CCceeEEEEEecccc
Q 004297 269 EDRVAPN---------KDEVLGKCMIPLQYV 290 (763)
Q Consensus 269 ~d~d~~~---------~d~~iG~~~i~l~~l 290 (763)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976543 356899999988654
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.9 Score=39.89 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=45.0
Q ss_pred cEEEEEE--CCEE-----EeeeeecCC-CCCccccEEEEEee--C-C-CcEEEEEEEeCCCCCCCCCCCCCCC----Ccc
Q 004297 388 AYCVAKY--GQKW-----VRTRTIIDS-PTPKWNEQYTWEVF--D-P-CTVITIGVFDNCHLHGGDKAGGARD----SRI 451 (763)
Q Consensus 388 pyv~v~~--~~~~-----~~T~~~~~t-~~P~wne~~~~~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~~~d----~~l 451 (763)
-||.+.+ |++. ..|..+.-+ .++.|||.++|++. + | ...|.|.||+.+... .+ ..|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~--------~~~~~~~~l 75 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK--------KSKKKKVPL 75 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST--------TT--EEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC--------ccccceeEE
Confidence 3555533 6654 255555555 79999999998876 3 3 779999999876542 22 689
Q ss_pred EEEEEecccc
Q 004297 452 GKVRIRLSTL 461 (763)
Q Consensus 452 G~v~i~l~~l 461 (763)
|.+.++|-+.
T Consensus 76 gw~n~~lFd~ 85 (142)
T PF00792_consen 76 GWVNLPLFDY 85 (142)
T ss_dssp EEEEEESB-T
T ss_pred EEEEEEeECC
Confidence 9999999875
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=87.17 E-value=4.3 Score=35.34 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=50.9
Q ss_pred EEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--------CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 389 YCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 389 yv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--------~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
||.+.+-+..-.|..+..+.+|.+|-+..|.|.-. ...+.|+++..-.. ..+.||.++|++.+
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~---------d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS---------DFETLAAGQISLRP 72 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS----------EEEEEEEEE--SH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC---------CeEEEEEEEeechh
Confidence 67776655544444444589999998888877632 45799999985421 46799999999999
Q ss_pred ccC--CCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 461 LET--DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 461 l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+.. +..+.....|.+.. |. .-|.|+..++..
T Consensus 73 ll~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 73 LLESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp HHH--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred hhcCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 853 32456666675433 22 469998888764
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.78 E-value=3.6 Score=35.36 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEec---CCCCceEEEEEEeCCC
Q 004297 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSKD---RIQSSVLEVTVKDKDF 110 (763)
Q Consensus 40 L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~l~i~V~d~~~ 110 (763)
+.+++....+.........++-||.+.+ |++ ...|+.+....++.|||...|++. -+.+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5567777777765543333578888855 553 335666655667999999999862 3347899999998643
|
Outlier of C2 family. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=86.62 E-value=8 Score=32.22 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 384 GTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 384 g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
|-++..|++++++.. .+|....- .+..|++.|++++.. +.+|+|.||=.|. ..+-|-..+.|.+..
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~-----------RslCav~~lrLEd~~ 73 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW-----------RSLCAVKFLKLEDER 73 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc-----------hhhhhheeeEhhhhc
Confidence 447788999998864 56665443 578899999998754 7789999987654 236677777787743
Q ss_pred CCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 463 TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 463 ~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.+ .-.+| ..+|.+..++.|
T Consensus 74 ~~----~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 74 HE----VQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred cc----ceecc--------ccccEEEEEEEe
Confidence 22 12222 346778777766
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.32 E-value=1.5 Score=44.56 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=62.7
Q ss_pred ecccCceeEEEEEEEEeecCCCC--CCCCCCCcEEEEEECCe-eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPK--DVTGSCDPYVEVKMGNY-KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~--~~~~~~dPyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
+++..-.|.|.++++.+++|... +.+-+-+-||++....+ +.+|.+.....-=.|.|+|..++.. ...+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 45566779999999999999643 22446788999999874 6678877777777899999998765 4567888888
Q ss_pred CCCC-CCee
Q 004297 108 KDFV-KDDF 115 (763)
Q Consensus 108 ~~~~-~d~~ 115 (763)
++.- +.++
T Consensus 122 W~pq~RHKL 130 (442)
T KOG1452|consen 122 WPPQRRHKL 130 (442)
T ss_pred cCchhhccc
Confidence 7764 4443
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.96 Score=52.74 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=80.7
Q ss_pred CCCCcEEEEEECCEE-EeeeeecCC-CCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 384 GTTDAYCVAKYGQKW-VRTRTIIDS-PTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 384 g~~Dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
..+++|+.+.+.... .+|..+++. .+|.|.+.|...+......+++.|-+.+..| ....+|.+.++...+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G--------~s~~w~~v~~s~~~~ 207 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG--------WSKRWGRVKISFLQY 207 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc--------ceeEEEEeccchhhh
Confidence 457999999997765 688888887 6999999998888888889999998877754 467999999999999
Q ss_pred cCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 462 ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 462 ~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
..+....+|+++...+.....+.-.+.+.+.|.+.
T Consensus 208 ~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 208 CSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred hccccccceeeeeccCCccccCCcccceEEeeEee
Confidence 99988999999976554322222234555555443
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=85.31 E-value=8.5 Score=37.24 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=32.7
Q ss_pred eeeeeeeCCCCCCeeccEEEEEe--cCCCCceEEEEEEeCCCC
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSK--DRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v--~~~~~~~l~i~V~d~~~~ 111 (763)
..+|.+.+.+.+|.|+|++-+.+ +.....-|.|++++....
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~ 96 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN 96 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccc
Confidence 56788888899999999998877 334567899999887653
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=84.30 E-value=9.1 Score=36.96 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=31.7
Q ss_pred eeeeeeeCCCCCCeeccEEEEEec--CCCCceEEEEEEeCCC
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDF 110 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~d~~~ 110 (763)
.++|.+...+.+|.|+|++-+.+. .....-|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 457888899999999999988873 3356788998887654
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=83.84 E-value=22 Score=33.88 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=57.8
Q ss_pred CCCcEEEEEECCE-EEeeecccC-CCCCccccceEEEEeeCCCCCeEEEEEEEccCCCCCceeEEEEEeccccccccCCC
Q 004297 220 FPEVYVKAQLGNQ-ALRTRVSAS-RTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297 (763)
Q Consensus 220 ~~dpyv~v~l~~~-~~kT~~~~~-~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~ 297 (763)
+..-|+++.++++ ..+|+...- ..-.-.|+|.|.+.+.. .-+.|.++||.... ..+..|+++.+++-.........
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~ 113 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTD 113 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCccccccc
Confidence 3467999999875 455554321 12335578999998866 56789999999866 68899999999987654321111
Q ss_pred CCCceeEEcccc
Q 004297 298 PVNTRWYNLEKH 309 (763)
Q Consensus 298 ~~~~~w~~L~~~ 309 (763)
.....|+.....
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114456555443
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=82.72 E-value=7.3 Score=33.46 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=45.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEEE----eeeeecCCCCCccccEEEEEee--C-C-CcEEEEEEEe
Q 004297 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGVFD 433 (763)
Q Consensus 364 l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V~d 433 (763)
+.+.+..+.+...... ...+|-||.+.+ |++.. .|..+.-+..+.|||-++|++. + | ...|.|.||+
T Consensus 13 ~~~~~~~~~~~~l~~~---~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLNWS---RDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcccc---cCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 4556666666654211 122588888854 66643 5555544557999999888766 3 3 6799999998
Q ss_pred CC
Q 004297 434 NC 435 (763)
Q Consensus 434 ~~ 435 (763)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 64
|
Outlier of C2 family. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=81.81 E-value=4.8 Score=39.03 Aligned_cols=58 Identities=9% Similarity=0.157 Sum_probs=35.0
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccc
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLST 460 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~ 460 (763)
.+.|.+.+++.+|.|+|+|.+.+.. +..-|.+++++...-. +. .++..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~-~~----~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE-SK----EKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS-SS-----SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc-cc----CccceeEEEEEEeee
Confidence 4788888999999999999998874 3668999999976532 00 022799999999988
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 763 | ||||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-10 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-10 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 8e-08 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 3e-05 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 2e-06 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 2e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 4e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 3e-04 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 9e-06 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 6e-05 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 8e-05 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 1e-04 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 2e-04 | ||
| 1v27_A | 141 | Solution Structure Of The First C2 Domain Of Rim2 L | 7e-04 |
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 1e-50
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 28 TSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQ 87
+ + V+ + L V+V+KA DL D +G DP+ +++GN + T K NPEWN+
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 88 VFAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
VF F I VLEVTV D+D DF+G+V L I P Y L+++
Sbjct: 63 VFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNK 114
Query: 147 KGD-KVRGELMLAV 159
+ +G + L +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 1e-19
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
+G+L++ +L A L+ D G +D +C+ + G ++T T+ + P+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNG 480
D V+ + VFD D +GKV I L ++ + + Y L
Sbjct: 69 KDIHDVLEVTVFDE------DGDK--PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ 118
Query: 481 VKKMGEIHLAVRF 493
K G I+L +
Sbjct: 119 AFK-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 3e-19
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L+V V++A DL D + + +LGN L+T + +NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFPIKDI- 71
Query: 261 EEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKK 318
+ L +TV ED + LGK IPL + Y L+ K
Sbjct: 72 HDVLEVTVFDEDGD--KPPDFLGKVAIPLLSIRDG------QPNCYVLKN-------KDL 116
Query: 319 DTKFASRIHMRI 330
+ F I++ +
Sbjct: 117 EQAFKGVIYLEM 128
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 5e-43
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 18 GGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY------K 71
G + D E + + VRV+ L KD+ G+ DPYV V + +
Sbjct: 1 GMATCAVEVFGLLED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTS 59
Query: 72 GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV 130
T+ +K NP+WN+ F Q L V D++ +DDF+G+V L +P
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 131 PPDS-PLAPQWYRLEDRKGD-KVRGELMLAVW 160
P P + + L R +V+G L L +
Sbjct: 119 PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 6e-17
Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 22/161 (13%)
Query: 182 GIEGLANIR-SKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA------L 234
G+ A + +RV VI L D + YV+ L + +
Sbjct: 1 GMATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSV 60
Query: 235 RTRVSASRTINPMWNEDLMFVAAEPFEEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDK 292
+T+ +++NP WNE+++F P + L+ V E+R+ +D+ LG+ +PL +
Sbjct: 61 QTKT-IKKSLNPKWNEEILFR-VHPQQHRLLFEVFDENRL--TRDDFLGQVDVPLYPLPT 116
Query: 293 R--LDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRIC 331
+P + + L + ++ + +++
Sbjct: 117 ENPRLERPYTFKDFVLHP-------RSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 6e-14
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW------VRTRTIIDSPTPKWNEQ 415
++ + ++ GL D G +D Y V+T+TI S PKWNE+
Sbjct: 20 RIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 416 YTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475
+ V + VFD ++ RD +G+V + L L T+
Sbjct: 77 ILFRVHPQQHRLLFEVFDE------NRLT--RDDFLGQVDVPLYPLPTENPRLERPYTFK 128
Query: 476 LYP-----NGVKKMGEIHLAVRF 493
+ + + G + L + +
Sbjct: 129 DFVLHPRSHKSRVKGYLRLKMTY 151
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-40
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ-- 97
L V V A ++P K G DP V V + K T+ + + NP WN++ F I
Sbjct: 9 LRVIVESASNIP-KTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 98 -SSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
SS L + VKD + ++ +G L ++ P + L + KG +
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQDTGATI 125
Query: 156 MLAV 159
L +
Sbjct: 126 DLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 9e-18
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEP-- 259
LRV V A ++ P K P+ V ++ +T+ +NP+WNE L F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKK-VDNELNPVWNEILEFDLRGIPL 66
Query: 260 -FEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKK 318
F L + V+D +++++G + L+ + + Y L + +G+
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD----QSRSLPYKLISLLNEKGQDTG 122
Query: 319 DTKFASRIHMRIC 331
T I + I
Sbjct: 123 AT-----IDLVIG 130
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 17/142 (11%)
Query: 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYT 417
S G+L + + +A + K G D + + +T+ + + P WNE
Sbjct: 3 SGSSGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILE 58
Query: 418 WEVF----DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
+++ D + + I V D + G ++ IG + L L D+ + Y L
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDF------ETIG--QNKLIGTATVALKDLTGDQSRSLPYKL 110
Query: 474 LVLY-PNGVKKMGEIHLAVRFT 494
+ L G I L + +
Sbjct: 111 ISLLNEKGQDTGATIDLVIGYD 132
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 5e-40
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 38 QYLYVRVVKAKDL---PPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAF 91
V V++A + D+ + DPYVE+ + + + TRHF NP WN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 92 SKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV 151
D Q +VLE+T+ D ++V D+ +G F ++ + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVL 117
Query: 152 RGELMLA 158
L +A
Sbjct: 118 EMSLEVA 124
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 21/140 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTW 418
+ +L A + D T D Y RTR + P WNE + +
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 419 EVFDPCT-VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLY 477
+ V+ I + D ++ D +G +S+++ +
Sbjct: 63 ILDPNQENVLEITLMDANYV---------MDETLGTATFTVSSMKVGEKKEVPFIF---- 109
Query: 478 PNGVKKMGEIHLAVRFTCSS 497
++ E+ L + +S
Sbjct: 110 ----NQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 201 YLRVNVIEAQDLQ---PTDKGRFPEVYVKAQLG---NQALRTRVSASRTINPMWNEDLMF 254
V V+ A + D P+ YV+ + + RTR + INP+WNE F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEF 62
Query: 255 VAAEPFEEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
+ E L +T+ + V DE LG + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYV---MDETLGTATFTV----SSMKVGEKKEVPFIFNQ 111
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-39
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
+ + VV A+ L KD TGS DPYV V++G K T+ NP W + F F S
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN-SSD 77
Query: 100 VLEVTVKDKD------------FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
++V V D+D DDF+G+ + ++ + + WY L+ R
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRT 130
Query: 148 GD-KVRGELMLAV 159
V G + L +
Sbjct: 131 DKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 3e-21
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 188 NIRSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTIN 245
++ V W + + V+ AQ LQ DK + YV Q+G RT+ +N
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKT-IYGNLN 61
Query: 246 PMWNEDLMFVAAEPFEEHLILTVED-----------RVAPNKDEVLGKCMIPLQYVDKRL 294
P+W E+ F + + + V D R D+ LG+ +I ++ + +
Sbjct: 62 PVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120
Query: 295 DHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLE 333
D WYNL+K + + + I + I +E
Sbjct: 121 D------VWYNLDK-------RTDKSAVSGAIRLHISVE 146
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 8e-20
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 349 LRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSP 408
++ + + + ++ AQGL KD G++D Y + G+ RT+TI +
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQA---KDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 409 TPKWNEQYTWEVFDPCTVITIGVFD---NCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465
P W E + +E + I + V D + + D +G+ I + TL +
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE- 119
Query: 466 VYTHSYPLLVLYPNGVKKMGEIHLAV 491
Y L G I L +
Sbjct: 120 -MDVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-38
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
M L V V KAK ++ + YV +K+ N K TT + + P W Q F F +R+
Sbjct: 4 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR---KGDKVRG 153
L V V +K + D +G V L I + + +W L+ + ++ G
Sbjct: 60 DLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMADSEICG 115
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-12
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V V +A+ +K YV ++ N T R P W +D MF
Sbjct: 6 LLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAV--RGSQPSWEQDFMFEINRL- 59
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L + V ++ D ++G IPL+ + + + P W L+ ++ + T
Sbjct: 60 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDSQAIMADSEICGT 116
Query: 321 KFA 323
K
Sbjct: 117 KDP 119
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-37
Identities = 67/300 (22%), Positives = 117/300 (39%), Gaps = 67/300 (22%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRHFEKKTNPEWNQ 87
YD Q L V +++A +LP D+ G+ DPYV+V + K T+ K NP +N+
Sbjct: 14 YD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 88 VFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
F F + L + V D D F K D +G +N + + +W L+
Sbjct: 72 QFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQ 126
Query: 145 DRKGD--KVRGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYL 202
+ + + G++ ++ A + L
Sbjct: 127 SAEKEEQEKLGDICFSLRYVPTAGK----------------------------------L 152
Query: 203 RVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRVSASRTINPMWNEDLMF-VA 256
V ++EA++L+ D G + YVK L +T + T+NP +NE F V
Sbjct: 153 TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVP 211
Query: 257 AEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYNL 306
E ++ +++TV D K++ +GK + L H +P+ +W+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAF--S 92
L V +++AK+L DV G DPYV++ + K T + NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 93 KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRV--------PPDSPLAPQWYRL 143
++IQ + VTV D D + K+D +G+V N + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 144 EDRK 147
+ +
Sbjct: 271 QVEE 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 60/268 (22%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMF--VA 256
L V +I+A +L D G + YVK L + T+V +T+NP++NE F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPY 79
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
+E + L++ V D +K +++G+ +P+ +D V W +L+ E EK
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQSAEKEEQEK 135
Query: 317 KKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMP 376
D F+ R PTA G L + IL A+ L
Sbjct: 136 LGDICFSLRYV-----------------------PTA--------GKLTVVILEAKNLKK 164
Query: 377 MKTKDGRGTTDAYCVAKY---GQKWV--RTRTIIDSPTPKWNEQYTWEV--FDPCTV-IT 428
M D G +D Y G++ +T ++ P +NE +++EV V +
Sbjct: 165 M---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVV 221
Query: 429 IGVFDNCHLHGGDKAGGARDSRIGKVRI 456
+ V D ++ IGKV +
Sbjct: 222 VTVL--------DYDKIGKNDAIGKVFV 241
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 5e-36
Identities = 84/323 (26%), Positives = 125/323 (38%), Gaps = 69/323 (21%)
Query: 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRHFEKKTNPEWNQ 87
Y L VR+++A DLP KD G DPYV++ + + T+ K NP +N+
Sbjct: 15 YL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 88 VFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
F F + L +V D D F + D +G+V+ D PPD PL W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDIL 129
Query: 145 DRKGDKV-RGELMLAVWMGTQADEAFPEAWHSDAATVTGIEGLANIRSKVYLSPKLWYLR 203
+ +K GEL + + P L
Sbjct: 130 EGGSEKADLGELNFS----------------------------------LCYLPTAGLLT 155
Query: 204 VNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRVSASRTINPMWNEDLMF-VAA 257
V +I+A +L+ D F + YVKA L ++ +T + T+NP +NE L+F VA
Sbjct: 156 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI-KKNTLNPTYNEALVFDVAP 214
Query: 258 EPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKR-LDH---------KPVNTRWYNL 306
E E L + V D +EV+G C + + D +H KPV W+ L
Sbjct: 215 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV-EHWHQL 273
Query: 307 ----EKHIVVEGEKKKDTKFASR 325
+G K K S
Sbjct: 274 VEEKTLSSFTKGGKGLSEKENSE 296
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 5e-18
Identities = 52/273 (19%), Positives = 101/273 (36%), Gaps = 59/273 (21%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMF--VA 256
L V +++A DL D F + YVK L + +T+V +T+NP++NE F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPL 80
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
AE + L +V D ++ +++G+ ++ + + + P W ++ +
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLD--NLLELAEQPPDRPLWRDILEG------- 131
Query: 317 KKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMP 376
+ ++ +C + + G+L + I+ A L
Sbjct: 132 GSEKADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNLKA 166
Query: 377 MKTKDGRGTTDAYCVAKY---GQKWV--RTRTIIDSPTPKWNEQYTWEV--FDPCTV-IT 428
M D G +D Y A G++ +T ++ P +NE ++V V ++
Sbjct: 167 M---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS 223
Query: 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461
I V D + IG R+
Sbjct: 224 IAVV--------DYDCIGHNEVIGVCRVGPEAA 248
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-35
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD 94
+ L V V KAK ++ + YV +K+ N + TT + + P W Q F F +
Sbjct: 11 GILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 95 RIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK 150
R+ L V V +K + D +G V L I + + +W L+ +
Sbjct: 67 RLDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 118
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 8e-12
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 22/166 (13%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V V +A+ +K YV ++ N T R P W +D MF
Sbjct: 15 LLCVGVKKAKFDGAQEKFNT---YVTLKVQNVESTTIAV--RGSQPSWEQDFMFEINRL- 68
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L + V ++ D ++G IPL+ + + + P W L+ ++ + T
Sbjct: 69 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDSQAIMADSEICGT 125
Query: 321 KFASRIHMRICLEGGYHVLDESTHYS--SDLRPTAKQLWKSSIGVL 364
K + +H + H+ D+ + W + L
Sbjct: 126 KDPT-----------FHRILLDAHFELPLDIPEEEARYWAKKLEQL 160
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 9e-34
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY------KGTTRHFEKKTNPEWNQV 88
+ + + V+V+ L KD+ G+ DPYV V + + T+ +K NP+WN+
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 89 FAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDR 146
F Q + V D++ +DDF+G+V L +P P P + + L R
Sbjct: 65 ILFRVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 147 KGD-KVRGELMLAV 159
+V+G L L +
Sbjct: 124 SHKSRVKGYLRLKM 137
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 5e-16
Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 22/150 (14%)
Query: 355 QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW------VRTRTIIDSP 408
+L V+ + ++ GL D G +D Y V+T+TI S
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 409 TPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYT 468
PKWNE+ + V I VFD ++ RD +G+V + L L T+
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDE------NRLT--RDDFLGQVDVPLYPLPTENPRM 109
Query: 469 HSYPLLVLYP-----NGVKKMGEIHLAVRF 493
+ + + G + L + +
Sbjct: 110 ERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 4e-15
Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 17/168 (10%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA------LRTRVSASRTINPMWNEDLMF 254
+RV VI L D + YV+ L + ++T+ +++NP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKT-IKKSLNPKWNEEILF 67
Query: 255 VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYV--DKRLDHKPVNTRWYNLEKHIVV 312
P ++ V D +D+ LG+ +PL + + +P + + L
Sbjct: 68 R-VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP---- 122
Query: 313 EGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSS 360
+ ++ + +++ DE+ + +L P L +
Sbjct: 123 ---RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPD 167
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-30
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-NPEWNQVFAFSKDRIQS 98
L V +V AK L D + DPYV++ + E PEWN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 99 SVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157
+ L+ + DKD +DD +G L V + + P Y + K ++ +GE+ +
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNV--VKDEEYKGEIWV 124
Query: 158 AV 159
A+
Sbjct: 125 AL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 3e-20
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++ A+ L+ D + YV+ Q ++ V+ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 262 EHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
L + +D +D+ +G+ IPL+ V + YN+ K +GE
Sbjct: 71 TELKAKIFDKDVG--TEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKDEEYKGE 121
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-17
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIID-SPTPKWNEQYTWE 419
G LE+ +++A+GL + D D Y + ++ TP+WNE + +
Sbjct: 9 HGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 420 VFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPN 479
V + T + +FD D D +G+ I L + + + +V +
Sbjct: 66 VSEGTTELKAKIFDK------DVGT--EDDAVGEATIPLEPVFVEGSIPPTAYNVV--KD 115
Query: 480 GVKKMGEIHLAVRFT 494
K GEI +A+ F
Sbjct: 116 EEYK-GEIWVALSFK 129
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-30
Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 8/142 (5%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEK 79
G + + L + V+ AK K PYVEV + T
Sbjct: 18 GMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN 77
Query: 80 KTNPEWNQVFAFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAP 138
+P+W Q S L V D +G D+ E K + L
Sbjct: 78 TNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLEE 133
Query: 139 QWYRLE---DRKGDKVRGELML 157
L+ D++ + G+L +
Sbjct: 134 VVVTLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 4e-18
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L++ VI A+ + P YV+ + Q+ +T + T +P W + L +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIVTP--V 94
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTK 321
L V D +LG + + K + K L+ G K+ T+
Sbjct: 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEV-VVTLQL-----GGDKEPTE 148
Query: 322 FASRIHMRICLEG 334
+ ICL+G
Sbjct: 149 TIGDLS--ICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 1e-12
Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVF 421
L++ +++A+ K Y + +T ++ +PKW + T V
Sbjct: 36 SQLQITVISAKLKEN---KKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV- 91
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL---ETDRVYTHSYPLLVLYP 478
P + + V+ + D +G + + ++ L +
Sbjct: 92 TPVSKLHFRVWSH------QTLK--SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143
Query: 479 N-GVKKMGEIHL 489
+ +G++ +
Sbjct: 144 KEPTETIGDLSI 155
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 3e-29
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 31 YDLVEQMQY--LYVRVVKAKDL---PPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTN 82
+ +VE V V++A + D+ + DPYVE+ + + + TRHF N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 83 PEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWY 141
P WN+ F F D Q +VLE+T+ D ++V D+ +G F ++ + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 2e-11
Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 19/213 (8%)
Query: 190 RSKVYLSPKLWYLRVNVIEAQDLQ---PTDKGRFPEVYVKAQLG---NQALRTRVSASRT 243
V V V+ A + D P+ YV+ + + RTR +
Sbjct: 9 HIIVEHQYS-HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNND 66
Query: 244 INPMWNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
INP+WNE F+ E L +T+ D DE LG + + +
Sbjct: 67 INPVWNETFEFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125
Query: 304 YNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGV 363
+ + + + L + D+ + + ++ K +G
Sbjct: 126 QV----------TEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGP 175
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ 396
L++ +P+ G G V G
Sbjct: 176 KNSEGLHSARDVPVVAILGSGGGFRAMVGFSGV 208
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 1e-06
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQYTW 418
+ +L A + D T D Y RTR + P WNE + +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 419 EVFDP-CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ V+ I + D ++ D +G +S+++ +
Sbjct: 78 ILDPNQENVLEITLMDANYVM---------DETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-25
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 28/148 (18%)
Query: 18 GGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--------- 67
ITG+ +L YD + L + +++A++L P+D G DP+V+V +
Sbjct: 1 ASHPITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56
Query: 68 -----GNYKGTTRHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGR 118
YK T++ +K NPEWNQ + S +++ LEVTV D D F +DF+G
Sbjct: 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
Query: 119 VLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
VL DL+ P+WY L+++
Sbjct: 117 VLIDLSSTSHLDN-----TPRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 4e-13
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 189 IRSKVYLSPKLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQL--------------G 230
I ++ L + Y L +++++A++L P D + + +VK L
Sbjct: 5 ITGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 231 NQALRTRVSASRTINPMWNEDLMFVA---AEPFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
RT+ +++NP WN+ +++ + + ++ L +TV D + ++ LG+ +I L
Sbjct: 63 EYKRRTKY-VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
Query: 288 QYVDKRLDHKPVNTRWYNLEKH 309
+ RWY L++
Sbjct: 122 SSTSHLDNT----PRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 29/131 (22%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCV--------------AKYGQKWVRTRTIIDS 407
G L + IL A+ L+P D G +D + + RT+ + S
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 408 PTPKWNEQYTWEVFDP----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463
P+WN+ ++ + + V+D D+ + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDY------DRFS--SNDFLGEVLIDLSSTSH 126
Query: 464 DRVYTHSYPLL 474
YPL
Sbjct: 127 LDNTPRWYPLK 137
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 25/141 (17%)
Query: 39 YLYVRVVKAKDLPPKDV-----------TGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWN 86
L +++ +A L P T DPY+ + + + + G T +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 87 QVFAFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145
F +E+ V + DDF+ E+ + W LE
Sbjct: 67 DEFVTDVC--NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLE- 120
Query: 146 RKGDKVRGELMLAVWM-GTQA 165
G++ + + + G+
Sbjct: 121 -----PEGKVYVIIDLSGSSG 136
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 6e-20
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 29/145 (20%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEV-----------YVKAQLGNQALRTRVSASRTINPMWN 249
L++ + EA L+PT V Y+ + + + + +T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 250 EDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309
++ + + L V D+ + C I + + + W +LE
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 310 IVVEGEKKKDTKFASRIHMRICLEG 334
++++ I L G
Sbjct: 123 --------------GKVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-15
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 362 GVLELGILNAQGLMPM--------KTKDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKW 412
G+L++ I A L P + D Y + +T T + +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 413 NEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHS 470
++++ +V + I + VF + G D + I+ L R +
Sbjct: 66 HDEFVTDVCNG-RKIELAVFHD------APIG--YDDFVANCTIQFEELLQNGSRHFEDW 116
Query: 471 YPLLVLYPNGVKKMGEIHLAVRFTCSS 497
L + G++++ + + SS
Sbjct: 117 IDL--------EPEGKVYVIIDLSGSS 135
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 4e-24
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE----KKT-NPEWNQVFA 90
+ L V V AK+L P D G DPYV++K+ + + K + NPEWN+ F
Sbjct: 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 91 FS-KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
F K+ + L V + D D ++DFMG + F ++E+ K W++L ++
Sbjct: 89 FQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-14
Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 182 GIEGLANIRSKVYLSPKLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQ 232
GI R ++Y+ L V V +A++L P D + YVK +L
Sbjct: 11 GILDSMERRGRIYIQ--AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES 68
Query: 233 ALRTRVSASRTINPMWNEDLMF-VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVD 291
+T+ ++NP WNE F + + L + + D ++++ +G +
Sbjct: 69 KQKTKT-IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGIS--- 124
Query: 292 KRLDHKPVNTRWYNLEKHIVVEGEK 316
L V W+ L EGE
Sbjct: 125 -ELQKAGV-DGWFKLLSQ--EEGEY 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 7e-09
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCV-----AKYGQKWVRTRTIIDSPTPKWNEQY 416
VL + + +A+ L+PM D G +D Y + +T+TI S P+WNE +
Sbjct: 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 417 TWEVF--DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+++ D +++ ++D D R+ +G + +S L+ V + LL
Sbjct: 88 RFQLKESDKDRRLSVEIWDW------DLTS--RNDFMGSLSFGISELQKAGV-DGWFKLL 138
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 5e-24
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRH 76
G+I + + Y+ Q L V+++KA++LP KD +G+ DP+V++ + K T+
Sbjct: 13 GRI---QFSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKV 67
Query: 77 FEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPP 132
K NP WN+ F F +++ +L + V D D F ++D +G V LN++
Sbjct: 68 KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL---- 123
Query: 133 DSPLAPQWYRLEDRKGDK 150
+ + W L+
Sbjct: 124 -TQMQTFWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMW 248
+ Y L V +++AQ+L D + +VK L L T+V + +NP W
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKV-KRKNLNPHW 76
Query: 249 NEDLMF---VAAEPFEEHLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
NE +F + + L L V DR ++++ +G+ IPL ++D + T W
Sbjct: 77 NETFLFEGFPYEKVVQRILYLQVLDYDRF--SRNDPIGEVSIPL----NKVDLTQMQTFW 130
Query: 304 YNLEKH 309
+L+
Sbjct: 131 KDLKPS 136
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTW 418
L + I+ AQ L D GT+D + + + T+ + P WNE + +
Sbjct: 26 STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Query: 419 EVFDPCTVIT----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
E F V+ + V D D+ R+ IG+V I L+ ++ ++ T L
Sbjct: 83 EGFPYEKVVQRILYLQVLDY------DRFS--RNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 7e-24
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 22/145 (15%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTR-- 75
G++ + +D + L V ++ AKDLP ++ +PYV++ R
Sbjct: 8 GQL---SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 76 HFEKKT-NPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPK 128
KKT P+WNQ F + + + +LE+T+ D+ V + +F+G +L +L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-- 120
Query: 129 RVPPDSPLAPQWYRLEDRKGDKVRG 153
P WY+L+ G
Sbjct: 121 ----LLDDEPHWYKLQTHDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 4e-15
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
KLW+ L V ++ A+DL + GR YVK RT+ +T+ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEP 71
Query: 247 MWNEDLMFVAAEPFEE----HLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVN 300
WN+ ++ + E L +T+ + RV + E LG+ +I L+ LD +P
Sbjct: 72 KWNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL--LDDEP-- 126
Query: 301 TRWYNLEKH 309
WY L+ H
Sbjct: 127 -HWYKLQTH 134
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L + IL A+ L + + Y + + RT+T+ + PKWN+ +
Sbjct: 21 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Query: 417 TWEVFDPCTVIT----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ I ++D + +G++ I L T D H Y
Sbjct: 78 IYSPVHRREFRERMLEITLWDQ------ARVREEESEFLGEILIELETALLDDE-PHWYK 130
Query: 473 LL 474
L
Sbjct: 131 LQ 132
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 8e-24
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 6 EEFSLKETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV 65
+E K GK+ + + YD Q L V +++A +LP D+ G+ DPYV+V
Sbjct: 15 SMVEKEEPKEEEKLGKL---QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKV 69
Query: 66 KMGNYKGTTR--HFEKKT-NPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRV 119
+ K +KT NP +N+ F F + L + V D D F K D +G
Sbjct: 70 FLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEF 129
Query: 120 LFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
+N + +W L+ +
Sbjct: 130 KVPMNTVDFGHV-----TEEWRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMW 248
L Y L V +I+A +L D G + YVK L + T+V +T+NP++
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVF 92
Query: 249 NEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
NE F +E + L++ V D +K +++G+ +P+ +D V W +L
Sbjct: 93 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDL 148
Query: 307 E 307
+
Sbjct: 149 Q 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIIDSPTPKWNEQYTW 418
L +GI+ A L + D GT+D Y +K T+ + P +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 419 EVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+V + + V+D D+ + IG+ ++ ++T++ V L
Sbjct: 99 KVPYSELGGKTLVMAVYDF------DRFS--KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 1e-23
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGT---TRH 76
GK+ + + YD Q L V +++A +LP D+ G+ DPYV+V + K T+
Sbjct: 21 GKL---QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV 75
Query: 77 FEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD 133
K NP +N+ F F + L + V D D F K D +G +N +
Sbjct: 76 HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-- 133
Query: 134 SPLAPQWYRLE 144
+W L+
Sbjct: 134 ---TEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-14
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMW 248
L Y L V +I+A +L D G + YVK L + T+V +T+NP++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVF 84
Query: 249 NEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
NE F +E + L++ V D +K +++G+ +P+ +D V W +L
Sbjct: 85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDL 140
Query: 307 E 307
+
Sbjct: 141 Q 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIIDSPTPKWNEQYTW 418
L +GI+ A L + D GT+D Y +K T+ + P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 419 EVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+V + + V+D D+ + IG+ ++ ++T++ V L
Sbjct: 91 KVPYSELGGKTLVMAVYDF------DRFS--KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 2e-23
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 21/133 (15%)
Query: 39 YLYVRVVKAKDLPPKDV----------TGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQ 87
YL VR+ +A L P DPY+ V + + G T +K P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 88 VFAFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
F + LE+ V + + D F+ E+ + S W LE
Sbjct: 90 EFCA--NVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLEP- 145
Query: 147 KGDKVRGELMLAV 159
G++ + +
Sbjct: 146 -----EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 1e-22
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 26/144 (18%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEV----------YVKAQLGNQALRTRVSASRTINPMWNE 250
YLRV + EA LQPT + Y+ + + + +T P +NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 251 DLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHI 310
+ + HL L V D + C + Q + + W +LE
Sbjct: 90 EFCANVTDG--GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE- 146
Query: 311 VVEGEKKKDTKFASRIHMRICLEG 334
++ + I L G
Sbjct: 147 -------------GKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 4e-15
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 31/167 (18%)
Query: 342 STHYSSDL--RPTAKQLWKSSIGVLELGILNAQGLMPM-------KTKDGRGTTDAYCVA 392
H+SS L R + G L + I A GL P K G D Y
Sbjct: 7 HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66
Query: 393 KYGQKWV-RTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRI 451
Q V +T T + P +NE++ V D + + VF L D +
Sbjct: 67 SVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLG--------YDHFV 117
Query: 452 GKVRIRLSTL----ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494
++ L + L + G++ + + T
Sbjct: 118 ANCTLQFQELLRTTGASDTFEGWVDL--------EPEGKVFVVITLT 156
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 8e-23
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 22 ITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTTR 75
++G + +D + L V ++ AKDLP ++ +PYV++ + K T+
Sbjct: 3 LSGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 76 HFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKR 129
+K P+WNQ F + + + +LE+T+ D+ V + +F+G +L +L
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--- 117
Query: 130 VPPDSPLAPQWYRLE 144
P WY+L+
Sbjct: 118 ---LLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 6e-16
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 26/136 (19%)
Query: 189 IRSKVYLSPKLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTR 237
+ ++ + LW+ L V ++ A+DL + GR YVK RT+
Sbjct: 3 LSGQLSIK--LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 238 VSASRTINPMWNEDLMFVAAEPFEE----HLILTV--EDRVAPNKDEVLGKCMIPLQYVD 291
+T+ P WN+ ++ E L +T+ + RV + E LG+ +I L+
Sbjct: 61 T-VKKTLEPKWNQTFIYSPV-HRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 292 KRLDHKPVNTRWYNLE 307
LD +P WY L+
Sbjct: 119 --LDDEPH---WYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L + IL A+ L + + Y + + RT+T+ + PKWN+ +
Sbjct: 18 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 417 TWEVFDPCT----VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ ++ I ++D + +G++ I L T D H Y
Sbjct: 75 IYSPVHRREFRERMLEITLWDQ------ARVREEESEFLGEILIELETALLDDE-PHWYK 127
Query: 473 L 473
L
Sbjct: 128 L 128
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-22
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 17 LGGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKM-----GN 69
LG +TG + Y+ +Q Q L V V + L D +PYV+ +
Sbjct: 3 LGNIFVTGRIAFSLKYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60
Query: 70 YKGTTRHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
K T NP +++ + + + L+ +V F ++ F+G ++
Sbjct: 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS- 119
Query: 127 PKRVPPDSPLAPQWYRLEDRKGDKVRGE 154
D L L + + G
Sbjct: 120 ---WKLDKKL-DHCLPLHGKISAESEGH 143
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 21/145 (14%)
Query: 185 GLANIRSKVYLSPKLWY------LRVNVIEAQDLQPTDKGR-FPEVYVKAQL-----GNQ 232
G + ++ S L Y L V+V E L D+ + YVK L
Sbjct: 4 GNIFVTGRIAFS--LKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQG 61
Query: 233 ALRTRVSASRTINPMWNEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYV 290
+T + T+NP+++E L + + + L +V ++ LG+ I +
Sbjct: 62 KRKTSI-KRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM--- 117
Query: 291 DKRLDHKPVNTRWYNLEKHIVVEGE 315
L I E E
Sbjct: 118 -DSWKLDKKLDHCLPLHGKISAESE 141
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
L + + L + + ++ Y ++ G++ +T D+ P ++E
Sbjct: 23 QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDE 78
Query: 415 QYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+E+ + + V+ + + G R++ +G+ I++ + + D+ H
Sbjct: 79 TLRYEIPESLLAQRTLQFSVWHH------GRFG--RNTFLGEAEIQMDSWKLDKKLDHCL 130
Query: 472 PL 473
PL
Sbjct: 131 PL 132
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-22
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTT 74
G + + + YD + L +++AK L P D G DPYV++ + + K T
Sbjct: 16 GAL---EFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRT 70
Query: 75 RHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV 130
+ NP WN+ + +++ +Q L ++V D+D F ++F+G F L ++
Sbjct: 71 KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ 130
Query: 131 PPDSPLAPQWYRLE 144
+ LE
Sbjct: 131 RKN-----FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
L Y L+ +I A+ L+P D + YVK L + LRT+ T NP
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT-LRNTRNP 79
Query: 247 MWNEDLMFVA---AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
+WNE L + + + L ++V D +E +G+ L K+L
Sbjct: 80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL----KKLKANQRKNFN 135
Query: 304 YNLEKHI 310
LE+ I
Sbjct: 136 ICLERVI 142
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L+ I+ A+GL PM D G D Y +RT+T+ ++ P WNE
Sbjct: 29 SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 417 TWEVFDPC----TVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ + I V D DK G + IG+ R L L+ ++ +
Sbjct: 86 QYHGITEEDMQRKTLRISVCDE------DKFG--HNEFIGETRFSLKKLKANQRKNFNIC 137
Query: 473 L 473
L
Sbjct: 138 L 138
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-22
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNYKGTTRHFEKKTNPEWNQVFAFSKDRIQ 97
+ + V+ AK+L KD DP+ ++ + +T + +P+WNQ + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 98 SSVLEVTVKDKDFVKDD----FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-----G 148
S + ++V + + F+G V N I + + RL+ K
Sbjct: 67 S--ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG------YQRLDLCKLNPSDT 118
Query: 149 DKVRGELML 157
D VRG++++
Sbjct: 119 DAVRGQIVV 127
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 4e-13
Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL--GNQALRTRVSASRTINPMWNEDLMFVAAEP 259
+R+ V+ A++L D R P+ + K + Q T T++P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDT-VKNTLDPKWNQHYDLY--VG 63
Query: 260 FEEHLILTV--EDRVAPNKDE-VLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEK 316
+ + ++V ++ + LG + + K + +L K + +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAIS---RLKDTGYQRLDLCKLNPSDTDA 120
Query: 317 KK 318
+
Sbjct: 121 VR 122
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKWVRTRTIIDSPTPKWNEQYTWEVF 421
+ L +L A+ L D D + + T T+ ++ PKWN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV- 62
Query: 422 DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHSYPLLVLYPN 479
ITI V+++ +H AG +G VR+ + + D Y + +
Sbjct: 63 GKTDSITISVWNHKKIHKKQGAG-----FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD 117
Query: 480 GVKKMGEIHLAVRF 493
G+I ++++
Sbjct: 118 TDAVRGQIVVSLQT 131
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 4e-22
Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 18/142 (12%)
Query: 11 KETKPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--- 67
+ +G +I ++ YD E+ + + +++ +L + V +
Sbjct: 21 SDESEAVGATRI---QIALKYD--EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPC 75
Query: 68 ---GNYKGTTRHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLF 121
TR + +N+VF S + L V V D ++ +G
Sbjct: 76 SESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQI 135
Query: 122 DLNEIPKRVPPDSPLAPQWYRL 143
L E V + +WY L
Sbjct: 136 SLAE----VCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 8e-13
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL------GNQALRTRVSASRTIN 245
L Y + +I+ +L + + +V ++ + RTR +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPL-DASDT 93
Query: 246 PMWNEDLMF-VAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRW 303
++NE ++ + L + V + +E LG I L V + +TRW
Sbjct: 94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS---GERSTRW 150
Query: 304 YNL 306
YNL
Sbjct: 151 YNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 25/125 (20%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC------VAKYGQKWVRTRTIIDSPTPKWNEQ 415
+ I+ L + + ++ RTR + S T +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 416 YTWEVFDPCTVIT-----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-TDRVYTH 469
+ + + + V D++ + +G +I L+ + + T
Sbjct: 100 FWVSM--SYPALHQKTLRVDVCTT------DRSH--LEECLGGAQISLAEVCRSGERSTR 149
Query: 470 SYPLL 474
Y LL
Sbjct: 150 WYNLL 154
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-21
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWN 86
V L V +++AK+L DV G DPYV++ + + R +KKT NP +N
Sbjct: 21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHL--MQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 87 QVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV--------PPDSP 135
+ F+F ++IQ + VTV D D K+D +G+V N + P P
Sbjct: 79 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP 138
Query: 136 LAPQWYRLEDRKGDKVRGELMLAV 159
+A QW+ L+ + + MLAV
Sbjct: 139 IA-QWHTLQVEE----EVDAMLAV 157
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 6e-14
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRVSASRTINPMWNEDLMF-V 255
L V ++EA++L+ D G + YVK L +T + T+NP +NE F V
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEV 85
Query: 256 AAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYN 305
E ++ +++TV D K++ +GK + L H +P+ +W+
Sbjct: 86 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHT 144
Query: 306 LE 307
L+
Sbjct: 145 LQ 146
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-21
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 21/127 (16%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQV 88
+ V ++KA++L D+ G+ DPYV+V + R +KKT NP +N+
Sbjct: 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWL--MYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 89 FAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLA 137
FAF ++++ + + +TV DKD ++D +G++ P V P P+A
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131
Query: 138 PQWYRLE 144
QW++L+
Sbjct: 132 -QWHQLK 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-14
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTINPMWNEDLMF-V 255
+ VN+I+A++L+ D G + YVK L + R T R +NP++NE F +
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVT-KKRNLNPIFNESFAFDI 76
Query: 256 AAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYN 305
E E +I+TV D+ ++++V+GK + + + H +PV +W+
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPV-AQWHQ 135
Query: 306 LE 307
L+
Sbjct: 136 LK 137
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-21
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF- 91
L V +++ L D G DP+V++ + + + KT NPE+N+ F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWL--KPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 92 -SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWY 141
+ L+++V D D +D++G ++ +R+ D + +W+
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWH 155
Query: 142 RLEDRK 147
+L++
Sbjct: 156 QLQNEN 161
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-14
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 24/131 (18%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTINP 246
L Y L V +I L D + + +VK L + T++ +T+NP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI-KKKTLNP 87
Query: 247 MWNEDLMF-VAAEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH-------- 296
+NE+ + + + L ++V D ++ +G C + + +RL H
Sbjct: 88 EFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNK 147
Query: 297 -KPVNTRWYNL 306
K + RW+ L
Sbjct: 148 DKKI-ERWHQL 157
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-21
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTG-SCDPYVEVKMGNYKGT---TR 75
G + + Y+ + + V + +A+ LP D + DPY+++ + K TR
Sbjct: 9 GTL---FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR 63
Query: 76 HFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIP 127
K +P +++ F F +IQ L T+ D F +DD +G VL L+ I
Sbjct: 64 VLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 198 KLWY------LRVNVIEAQDLQPTD-KGRFPEVYVKAQL---GNQALRTRVSASRTINPM 247
L Y VN+ EA+ L D + + Y+K + ++TRV +T++P
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV-LRKTLDPA 72
Query: 248 WNEDLMFVAAEPFEEH---LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWY 304
++E F + L T+ ++D+++G+ +IPL ++ +
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE---LSEGKMLMNR 129
Query: 305 NLEKH 309
+
Sbjct: 130 EIISG 134
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 7e-21
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT-------NPEWNQVFAF- 91
L V V+KA+ LP DV+G DPYV+V + Y R +KKT N +N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNL--YHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 92 -SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWY 141
+ ++ +E V D + +++ +GR++ P +A +W+
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWH 148
Query: 142 RLED 145
L D
Sbjct: 149 MLCD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALR-----TRVSASRTINPMWNEDLMF-V 255
L V V++A+ L +D + YVK L + R T V T N ++NE +F +
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV-KKCTPNAVFNELFVFDI 90
Query: 256 AAEPFEE-HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH---------KPVNTRWYN 305
E EE + V D +++EV+G+ ++ H + + +W+
Sbjct: 91 PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQI-AKWHM 149
Query: 306 L 306
L
Sbjct: 150 L 150
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPP-------KDVTGSCDPYVEVKMGNYKG 72
G + ++ YD +L VRV++A+DLPP + +PYV++ + +
Sbjct: 13 GML---HFSTQYD--LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK 67
Query: 73 T---TRHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
T K P + + + F Q L +TV D D F + +G+V L E+
Sbjct: 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
Query: 127 PKRVPPDSPLAPQWYRLEDRK 147
W L
Sbjct: 128 DL-----VKGGHWWKALIPSG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 198 KLWY------LRVNVIEAQDLQPT-------DKGRFPEVYVKAQL---GNQALRTRVSAS 241
Y L V VIEA+DL P YVK L + +T V
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR- 76
Query: 242 RTINPMWNEDLMFV--AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299
+T P++ E F E L+LTV D ++ V+GK +PL +D
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL----CEVDLVKG 132
Query: 300 NTRWYNLE 307
W L
Sbjct: 133 GHWWKALI 140
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 362 GVLELGILNAQGLMPM----KTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNE 414
L + ++ A+ L P ++ ++ Y + +T + P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 415 QYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+YT+E+ + + V D DK R IGKV + L ++ +
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDF------DKFS--RHCVIGKVSVPLCEVDLVKGGHWWK 137
Query: 472 PL 473
L
Sbjct: 138 AL 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 16 HLGGGKITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GN 69
H K+ G +L + D Q + L + +++ K L K G+CDPYV++ +
Sbjct: 6 HHHSHKVQGAGQLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRL 62
Query: 70 YKGTTRHFEKKTNPEWNQVFAFS-KDRIQSSVLEVTVKDKDFV--KDDFMGRVLFDLNEI 126
T+ +P +++ F F ++ L VTV ++ + +G + F + +
Sbjct: 63 RHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
Query: 127 PKRVPPDSPLAPQWYRLEDRK 147
PD ++ WY L
Sbjct: 123 LT---PDKEIS-GWYYLLGEH 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 189 IRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRT 243
+ ++ + + L +++IE + L G + YVK L + +T+
Sbjct: 16 GQLRLSIDAQDRVLLLHIIEGKGLISKQPG-TCDPYVKISLIPEDSRLRHQKTQT-VPDC 73
Query: 244 INPMWNEDLMF-VAAEPFEEHLILTVEDRVAPNK-DEVLGKCMIPLQYVDKRLDHKPVNT 301
+P ++E F V E ++ L++TV +R + ++ ++G ++ K + +
Sbjct: 74 RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK--SLLTPDKEI-S 130
Query: 302 RWYNLEKHIVVEGEKKKDTKFASRI 326
WY L G K K A R
Sbjct: 131 GWYYLLGE--HLGR-TKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
VL L I+ +GL+ GT D Y ++ + +T+T+ D P ++E
Sbjct: 27 RVLLLHIIEGKGLISK----QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHE 80
Query: 415 QYTWEVF--DPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET-DRVYTHSY 471
+ + V D + + V++ + IG + + +L T D+ + Y
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQ-------SRQSGLIGCMSFGVKSLLTPDKEISGWY 133
Query: 472 PLL 474
LL
Sbjct: 134 YLL 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 3e-20
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEV-----KMGNYKGTT 74
G+I +LT + Q L V V ++L GS DPYV + K + + T
Sbjct: 11 GQI---QLTIRHS--SQRNKLIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKT 64
Query: 75 RHFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDD--FMGRVLFDLNEIPKR 129
+K NP ++Q F F S +Q L+V VK+ F+ D +G+VL L
Sbjct: 65 HVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELA 124
Query: 130 VPPDSPLAPQWYRLEDRKGDK 150
QWY L + G
Sbjct: 125 KG-----WTQWYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-11
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 25/129 (19%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
+ + L V V ++L + + YV+ L + +T V + +T+NP
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHV-SKKTLNP 73
Query: 247 MWNEDLMFVAAEPFEE----HLILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVN 300
++++ F E L + V +LGK ++ L +
Sbjct: 74 VFDQSFDFSV--SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL----ASEELAKGW 127
Query: 301 TRWYNLEKH 309
T+WY+L +
Sbjct: 128 TQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 22/123 (17%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
L + + + L+ +D Y + G++ +T + P +++
Sbjct: 24 NKLIVVVHACRNLIAF----SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQ 77
Query: 415 QYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+ + V + + V ++ +GKV + L++ E + +T Y
Sbjct: 78 SFDFSVSLPEVQRRTLDVAVKNS------GGFLSKDKGLLGKVLVALASEELAKGWTQWY 131
Query: 472 PLL 474
L
Sbjct: 132 DLT 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-20
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 20/135 (14%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM----GNYKGTTR 75
K+ YD Q L+V ++A + G CD YV+ + G+ + T
Sbjct: 13 PKL---HYCLDYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTA 64
Query: 76 HFEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPP 132
+++ + W + +++ + ++ L +T++ D F + G + L+ +
Sbjct: 65 LKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGA 124
Query: 133 DSPLAPQWYRLEDRK 147
QW L+
Sbjct: 125 A-----QWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-10
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL----GNQALRTRVSASRTINPM 247
L Y L V +EA + + YV+ + G+ +T + R ++
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTAL-KKRQLHTT 73
Query: 248 WNEDLMF-VAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYN 305
W E L+ +A E L LT+ ++ V G+ + L +W
Sbjct: 74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL----DGTSVPLGAAQWGE 129
Query: 306 LE 307
L+
Sbjct: 130 LK 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 6e-20
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEV-------KMGNYKGTTRHFEKKTNPEWNQVFAF- 91
L++ V+ KDL +D +PYV+ K K T+ K NP +N++ +
Sbjct: 22 LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRK--TKISRKTRNPTFNEMLVYS 78
Query: 92 --SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
SK+ ++ L+++V + ++ F+G + L + +WY+L
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKD----FNLSKET-VKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 198 KLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINPMW 248
+ Y L + V+ +DL D P YVK L +T++ + +T NP +
Sbjct: 14 SVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKI-SRKTRNPTF 71
Query: 249 NEDLMF--VAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYN 305
NE L++ + E + L L+V + ++ LG +PL+ + L + +WY
Sbjct: 72 NEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFN--LSKET--VKWYQ 127
Query: 306 LE 307
L
Sbjct: 128 LT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 25/124 (20%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIIDSPTPKWNE 414
G L + +++ + L+ DG + Y K ++ +T+ + P +NE
Sbjct: 20 GTLFIMVMHIKDLVTE---DG-ADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFNE 73
Query: 415 QYTWEVFDPCTVIT----IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470
+ + T+ + V + + +G + + L +
Sbjct: 74 MLVYSGYSKETLRQRELQLSVLSA------ESLR--ENFFLGGITLPLKDFNLSKETVKW 125
Query: 471 YPLL 474
Y L
Sbjct: 126 YQLT 129
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 3e-17
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 21/145 (14%)
Query: 17 LGGGKITGDKLTST-------YDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKM- 67
G ++ G + +T + ++ L V V++A+ L K + + PYV+V +
Sbjct: 2 PGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLL 61
Query: 68 -GNYKGTTR--HFEKKT-NPEWNQVFAFSKDRIQSSVLEVTVK-DKD-FVKDDFMGRVLF 121
+ +KT +P + Q F + Q VL+V V D FMG
Sbjct: 62 ENGACIAKKKTRIARKTLDPLYQQSLVFDES-PQGKVLQVIVWGDYGRMDHKCFMGVAQI 120
Query: 122 DLNEIPKRVPPDSPLAPQWYRLEDR 146
L E + S + WY+L
Sbjct: 121 LLEE----LDLSSMV-IGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-10
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 202 LRVNVIEAQDLQPTDKGR-FPEVYVKAQL-----GNQALRTRVSASRTINPMWNEDLMFV 255
L V VI A+ L + P YVK L +TR+ A +T++P++ + L+F
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRI-ARKTLDPLYQQSLVF- 89
Query: 256 AAEPFEEHLILTV---EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNL 306
P + L + V R+ +G I L + LD + WY L
Sbjct: 90 DESPQGKVLQVIVWGDYGRMD--HKCFMGVAQILL----EELDLSSMVIGWYKL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAK--YGQKWV---RTRTIIDSPTPKWNEQY 416
G LE+ ++ A+ L + T Y + +TR + P + +
Sbjct: 30 GQLEVEVIRARSLTQKP--GSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 417 TWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
++ V+ + V+ + + +G +I L L+ + Y L
Sbjct: 88 VFDESPQGKVLQVIVWGD-----YGRMD--HKCFMGVAQILLEELDLSSMVIGWYKLF 138
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 77.3 bits (189), Expect = 8e-15
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFS-KD 94
+ +L V +A+ L T + D Y++V G + T NP W F
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 95 RIQSSVLEVTVKDKD-FVKDDFMGRVLFDL 123
L V V D D DD +G
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSP 480
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-09
Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMF-V 255
L +L V+ A+ L D + Y+K G Q RT V NP W + + F
Sbjct: 391 RGLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGV-VWNNNNPRWTDKMDFEN 448
Query: 256 AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
L + V D D++LG C + L
Sbjct: 449 VLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH--------SGFHEVTCELNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 8e-05
Identities = 30/201 (14%), Positives = 58/201 (28%), Gaps = 34/201 (16%)
Query: 300 NTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRP---TAKQL 356
N + L + I + + SR C G + +S
Sbjct: 333 NPKREALRQAISHYIMSRARWQNCSRP----CRSGQHKSSHDSCQCECQDSKVTNQDCCP 388
Query: 357 WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQY 416
+ + L + A+ L T TDAY +G + RT + ++ P+W ++
Sbjct: 389 RQRGLAHLVVSNFRAEHLWGDYTTA----TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKM 444
Query: 417 TWEVFD--PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+E + + V+ D G D +G + + + L
Sbjct: 445 DFENVLLSTGGPLRVQVW--------DADYGWDDDLLGSCDRSPHSGFHE----VTCEL- 491
Query: 475 VLYPNGVKKMGEIHLAVRFTC 495
G + + C
Sbjct: 492 --------NHGRVKFSYHAKC 504
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 8e-10
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L V V++A +L G +PY E+ MG+ TTR + NP+WN F +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 100 VLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149
VL +T+ D+D F DDF+GR + +I P+ + E G+
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGE 499
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 188 NIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPM 247
+++ + + L V+VIEA +L+ Y + +G+Q+ TR T+NP
Sbjct: 375 AYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTI-QDTLNPK 433
Query: 248 WNEDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLE 307
WN + F + +++ L LT+ DR + D+ LG+ IP+ + + K TR L
Sbjct: 434 WNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTR--RLL 491
Query: 308 KHIVVEGE 315
H V GE
Sbjct: 492 LHEVPTGE 499
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 1e-08
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT----NPEWNQVFAFSKDR 95
L + +++A++LPPK Y E+ + + + ++ W + F F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 96 IQSSVLEVTVKDKDFV----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149
++ +D D K ++G V + + R + G
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGG 125
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 48.1 bits (113), Expect = 9e-06
Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 22/198 (11%)
Query: 363 VLELGILNAQGLMPMKTKDGRGTTDAYC-VAKYGQKWVRTRT---IIDSPTPKWNEQYTW 418
VL+L I+ A+ L P K YC + + RT + T W E + +
Sbjct: 12 VLKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 419 EVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP 478
+ + ++ + K + +G V + ++TL YP+ +
Sbjct: 64 NNLPAVRALRLHLYRDSD----KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG 119
Query: 479 NGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHY-----LHPLTVSQLDSLRHQATQ 533
+G G + + K Y L + +
Sbjct: 120 SG-GSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYR 178
Query: 534 IVSMRLSRAEPPLRKEVV 551
++ L A KE V
Sbjct: 179 MLCAVLEPALNVKGKEEV 196
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 2e-05
Identities = 22/160 (13%), Positives = 41/160 (25%), Gaps = 11/160 (6%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL-GNQALRTRVS--ASRTINPMWNEDLMFVAAE 258
L++ +IEA++L P + Y + L RT ++ W E F
Sbjct: 13 LKLWIIEARELPPKKR-----YYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 259 PFEE---HLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
HL + + +K +G +P+ + R +
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMG 127
Query: 316 KKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQ 355
+ L S L +
Sbjct: 128 SGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYK 167
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 9e-08
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNP-EWNQVFAFSKDR--I 96
L V + +L G D +V +R E + ++++ F +
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 97 QSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGEL 155
++ VLE+ + + + +G L ++ + L D ++ L
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVE-----ENRVEVSDTLIDDNNAIIKTSL 132
Query: 156 MLAV 159
+ V
Sbjct: 133 SMEV 136
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V++ +L +GR + K Q+ +RV + ++E + A +
Sbjct: 23 LIVHLKTVSEL----RGR-ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 262 --EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKD 319
E L + + + ++++G + LQ V V + ++ D
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV--------VEENRVEVSDTLI-------D 122
Query: 320 TKFASRIHMRICLEGGYHVLDES 342
+ I + +E Y D +
Sbjct: 123 DN-NAIIKTSLSMEVRYQAADGT 144
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 78/560 (13%), Positives = 151/560 (26%), Gaps = 182/560 (32%)
Query: 268 VEDRVAPN--------KDEVLGKCMIPLQYVDKRLDHKPVNTRWYN----LEKHIVVEGE 315
VE+ + N K E M+ Y+++R R YN K+ V +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKYNVSRLQ 135
Query: 316 KKKDTKFA---SRIHMRICLEG----GYHVLDESTHYSSDLRPTAKQ----LWKSSIGVL 364
+ A R + ++G G + + K W ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFW-LNLKNC 192
Query: 365 ---ELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRT---RTIIDSPTPK------- 411
E + Q L+ + +D K ++ R + P
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 412 -WNEQYTWEVFDP-C-TVIT---IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR 465
N + W F+ C ++T V D +S
Sbjct: 253 VQNAK-AWNAFNLSCKILLTTRFKQVTD---------------FLSAATTTHISLDHHSM 296
Query: 466 VYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPK-MHYLHPLTVSQL 524
T +L L+ LP+ + +P +S +
Sbjct: 297 TLTPDEVKSLL-------------------LKYLDC----RPQDLPREVLTTNPRRLSII 333
Query: 525 -----------DSLRH----QATQIVSMRLSRAEPPLRKEVVEYML----DVGSHMWSMR 565
D+ +H + T I+ L+ EP +++ + +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-------- 385
Query: 566 RILSGIIAVGKWFDQI------------------CNWKNPITTVLIHILFIILVLYPE-- 605
I + ++++ WFD I K +T+ I +++ L + E
Sbjct: 386 HIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKE--STISIPSIYLELKVKLENE 442
Query: 606 -----LILPTVFLYLFLIGVWYYRWRPRHPPHMD----TRLS-HADSAHPDELDEEFDTF 655
I+ Y + PP++D + + H + E F
Sbjct: 443 YALHRSIVDH---YNIPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--- 493
Query: 656 PTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWR---------DPRATAL 706
RM + R + +I+ G L +L + DP+ L
Sbjct: 494 ---------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 707 ---FVIFCLIAAIVLYVTPF 723
+ F L + +
Sbjct: 545 VNAILDFLPKIEENLICSKY 564
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSC--DPYVEVKM------GNYKGTTRHFEKKTNPEWNQVF 89
+ L VR++ + LP + + DP V V++ + T NP W+ F
Sbjct: 497 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 556
Query: 90 AFSKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEI 126
F +++ V+D D K+DF+G+ N +
Sbjct: 557 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL 594
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-04
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 198 KLWYLRVNVIEAQDLQPTD--KGRFPEVYVKAQLG-----NQALRTRVSASRTINPMWNE 250
+ LRV +I Q L + K + V ++ + +T V + NP W+
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 554
Query: 251 DLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQY 289
+ F P + VED + +K++ +G+ IP
Sbjct: 555 EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 593
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY----KGTTRHFEKKTN-PEWNQVFAFSK 93
+L + + + + P+ VKM +G T +K T PEW F
Sbjct: 7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHI 66
Query: 94 DRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144
V+++ + ++ + V ++ + +R ++ A W L+
Sbjct: 67 YE--GRVIQIVLMRA---AEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 763 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.98 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.84 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.83 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.82 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.82 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.81 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.79 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.78 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.78 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.77 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.77 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.76 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.76 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.76 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.75 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.75 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.75 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.75 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.74 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.74 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.74 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.73 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.73 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.73 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.73 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.73 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.73 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.73 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.73 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.73 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.73 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.73 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.73 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.72 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.72 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.72 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.71 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.71 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.71 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.71 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.71 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.71 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.7 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.7 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.69 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.69 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.68 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.68 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.68 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.68 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.68 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.67 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.66 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.66 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.66 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.62 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.6 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.6 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.59 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.59 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.58 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.57 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.56 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.51 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.48 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.47 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.47 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.47 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.41 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.4 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.24 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.14 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.13 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.12 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.11 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.07 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.07 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.06 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.01 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.86 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.82 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.76 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.69 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 89.51 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 88.06 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 87.76 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 83.56 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 83.1 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 83.07 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 81.74 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=284.56 Aligned_cols=229 Identities=25% Similarity=0.357 Sum_probs=190.9
Q ss_pred eEEEEEEEEccccCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCccccceEEEEeeCC--CCCeEEEEEEEccCC
Q 004297 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN---QALRTRVSASRTINPMWNEDLMFVAAEP--FEEHLILTVEDRVAP 274 (763)
Q Consensus 200 g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~L~i~V~d~d~~ 274 (763)
+.|+|+|++|++|+.++.++.+||||++++++ +.++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 47999999999999999989999999999963 5789999887 99999999999998643 357999999999999
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcchh
Q 004297 275 NKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAK 354 (763)
Q Consensus 275 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~ 354 (763)
+++++||++.++|.++.. ......|++|..... ......|.+.+.+.+.
T Consensus 98 ~~~~~lG~~~i~l~~l~~----~~~~~~w~~L~~~~~------~~~~~~G~i~l~l~~~--------------------- 146 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDF----GHVTEEWRDLQSAEK------EEQEKLGDICFSLRYV--------------------- 146 (284)
T ss_dssp SCCCEEEEEEEEGGGCCC----SSCEEEEEECBCCSS------CCCCCCCEEEEEEEEE---------------------
T ss_pred CCCceeEEEEEcchhccc----CCcceeEEEeecccc------ccccccccEEEEEEec---------------------
Confidence 999999999999999864 234678999987521 1123468888777652
Q ss_pred hhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---EEEeeeeecCCCCCccccEEEEEeeCC---CcE
Q 004297 355 QLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTV 426 (763)
Q Consensus 355 ~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~ 426 (763)
+..+.|.|.|++|+||+++ |..|.+||||++.+. + ..++|+++++++||+|||.|.|.+..+ ...
T Consensus 147 ----p~~~~l~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 219 (284)
T 2r83_A 147 ----PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQ 219 (284)
T ss_dssp ----TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEE
T ss_pred ----CcCCceEEEEEEeECCCCc---CCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceE
Confidence 2347999999999999987 566899999999883 3 357999999999999999999998754 347
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc------------cCCCeEeeeEeeee
Q 004297 427 ITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL------------ETDRVYTHSYPLLV 475 (763)
Q Consensus 427 l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l------------~~~~~~~~~~~L~~ 475 (763)
|.|+|||++.++ +|++||++.|++..+ ..++...+||+|..
T Consensus 220 l~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 220 VVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EEEEEEECCSSS--------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred EEEEEEeCCCCC--------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 999999999876 899999999999874 24567789999965
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=285.23 Aligned_cols=243 Identities=25% Similarity=0.394 Sum_probs=200.6
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC--CCCc
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~ 99 (763)
..+++.|+ ...+.|.|+|++|++|+..+..+.+||||++++++ ++++|++++++.||.|||+|.|.+.. ....
T Consensus 8 l~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~ 85 (284)
T 2r83_A 8 LQYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGK 85 (284)
T ss_dssp EEEEEEEE--TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTC
T ss_pred EEEEEEEE--CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcC
Confidence 34555555 56689999999999999999889999999999964 47889999999999999999999853 3467
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC--CccceEEEEEEEEcccCCCCCCcccccc
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG--DKVRGELMLAVWMGTQADEAFPEAWHSD 176 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~~~~~~~d~~~~~~~~~~ 176 (763)
.|.|+|||.+.. ++++||++.++|.++..+. ...+|++|....+ ....|+|.+++.+.+
T Consensus 86 ~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p------------- 147 (284)
T 2r83_A 86 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLRYVP------------- 147 (284)
T ss_dssp EEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEEEET-------------
T ss_pred EEEEEEEECCCCCCCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEEecC-------------
Confidence 999999999988 8999999999999997653 3578999987643 235699998876642
Q ss_pred ccccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCccccce
Q 004297 177 AATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG--N---QALRTRVSASRTINPMWNED 251 (763)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wne~ 251 (763)
..+.|.|.|++|++|+.++.++.+||||++++. + .+++|+++++ +.||.|||.
T Consensus 148 ---------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~ 205 (284)
T 2r83_A 148 ---------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNES 205 (284)
T ss_dssp ---------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEE
T ss_pred ---------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEcee
Confidence 234799999999999999998999999999985 2 4688999887 999999999
Q ss_pred EEEEeeCCC--CCeEEEEEEEccCCCCCceeEEEEEeccccccc--------cCCCCCCceeEEcccc
Q 004297 252 LMFVAAEPF--EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKR--------LDHKPVNTRWYNLEKH 309 (763)
Q Consensus 252 f~f~~~~~~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~--------~~~~~~~~~w~~L~~~ 309 (763)
|.|.+.... ...|.|+|||++..+++++||++.+++..+... ...+....+|++|...
T Consensus 206 f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 206 FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred EEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 999986543 347999999999999999999999999864321 1123446789999875
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=285.18 Aligned_cols=229 Identities=23% Similarity=0.355 Sum_probs=187.7
Q ss_pred eEEEEEEEEccccCCCCCCCCCCcEEEEEE---CCEEEeeecccCCCCCccccceEEEEeeCCC--CCeEEEEEEEccCC
Q 004297 200 WYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFVAAEPF--EEHLILTVEDRVAP 274 (763)
Q Consensus 200 g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l---~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V~d~d~~ 274 (763)
+.|.|+|++|++|+.++.++.+||||++++ +++.++|+++++ +.||.|||+|.|.+.... ...|.|+|||+|.+
T Consensus 20 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~ 98 (296)
T 1dqv_A 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98 (296)
T ss_dssp CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence 479999999999999999999999999999 567899999887 999999999999986432 45899999999999
Q ss_pred CCCceeEEEEEe-ccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEccCccccCCCcccCCCCCcch
Q 004297 275 NKDEVLGKCMIP-LQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEGGYHVLDESTHYSSDLRPTA 353 (763)
Q Consensus 275 ~~d~~iG~~~i~-l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~ 353 (763)
+++++||++.++ +.++.. .......|+.|.... ......|+|.+.+++.
T Consensus 99 ~~~~~iG~~~i~~l~~~~~---~~~~~~~w~~L~~~~-------~~~~~~G~i~vsl~y~-------------------- 148 (296)
T 1dqv_A 99 SRHDLIGQVVLDNLLELAE---QPPDRPLWRDILEGG-------SEKADLGELNFSLCYL-------------------- 148 (296)
T ss_dssp SCCCEEEEEECCCTTGGGS---SCSSCCCCEECBCCS-------SCCSCCCEEEEEEEEE--------------------
T ss_pred CCCceEEEEEecccccccc---CCccceeeecccccc-------ccccccceEEEEEEec--------------------
Confidence 999999999996 444432 123356899997642 1223468888887652
Q ss_pred hhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC--C---EEEeeeeecCCCCCccccEEEEEeeCC---Cc
Q 004297 354 KQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIIDSPTPKWNEQYTWEVFDP---CT 425 (763)
Q Consensus 354 ~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~ 425 (763)
+..|.|.|.|++|+||+++ |..|.+||||++.++ + ..++|+++++++||+|||.|.|.+... ..
T Consensus 149 -----~~~~~l~v~v~~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 220 (296)
T 1dqv_A 149 -----PTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENV 220 (296)
T ss_dssp -----TTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSC
T ss_pred -----cccceeEEEEEEeecCCcc---CCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCc
Confidence 2348999999999999987 566889999999885 3 468999999999999999999998754 45
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc-------------CCCeEeeeEeeee
Q 004297 426 VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-------------TDRVYTHSYPLLV 475 (763)
Q Consensus 426 ~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~-------------~~~~~~~~~~L~~ 475 (763)
.|.|+|||++.++ +|++||.+.|++..+. .++...+|++|..
T Consensus 221 ~L~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 221 GLSIAVVDYDCIG--------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp CCCCEEEECCSSS--------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred EEEEEEEeCCCCC--------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 7999999999876 8999999999999863 3455667777754
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=281.28 Aligned_cols=245 Identities=29% Similarity=0.442 Sum_probs=196.6
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeeeCCCCCCeeccEEEEEec--CCCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTNPEWNQVFAFSKD--RIQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~ 100 (763)
++.+...+....+.|.|+|++|++|+..|..|.+||||++++ +.++++|++++++.||.|||+|.|.+. ++....
T Consensus 8 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 87 (296)
T 1dqv_A 8 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK 87 (296)
T ss_dssp EEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred EEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCE
Confidence 344444455567899999999999999999999999999999 447889999999999999999999984 333568
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEE-ccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEEEEcccCCCCCCccccccc
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFD-LNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQADEAFPEAWHSDA 177 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~~~d~~~~~~~~~~~ 177 (763)
|.|+|||.+.+ ++++||++.++ +.++.... .....|++|....+ ....|+|.+++.+.+
T Consensus 88 L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~----~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~-------------- 149 (296)
T 1dqv_A 88 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP----PDRPLWRDILEGGSEKADLGELNFSLCYLP-------------- 149 (296)
T ss_dssp CEEEEEECCSSSCCCEEEEEECCCTTGGGSSC----SSCCCCEECBCCSSCCSCCCEEEEEEEEET--------------
T ss_pred EEEEEEEcCCCCCCceEEEEEeccccccccCC----ccceeeeccccccccccccceEEEEEEecc--------------
Confidence 99999999998 89999999995 44444321 12467999987543 235699999887642
Q ss_pred cccccccccccccccccccCceeEEEEEEEEccccCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCccccceE
Q 004297 178 ATVTGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLG--N---QALRTRVSASRTINPMWNEDL 252 (763)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wne~f 252 (763)
..+.|.|+|++|++|+.++..+.+||||++++. + .+++|+++++ +.||.|||.|
T Consensus 150 --------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f 208 (296)
T 1dqv_A 150 --------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEAL 208 (296)
T ss_dssp --------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECC
T ss_pred --------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceE
Confidence 234799999999999999999999999999996 2 5789999887 9999999999
Q ss_pred EEEeeCCC--CCeEEEEEEEccCCCCCceeEEEEEecccccc-cc--------CCCCCCceeEEcccc
Q 004297 253 MFVAAEPF--EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDK-RL--------DHKPVNTRWYNLEKH 309 (763)
Q Consensus 253 ~f~~~~~~--~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~-~~--------~~~~~~~~w~~L~~~ 309 (763)
.|.+.... ...|.|+|||++..+++++||++.|++.++.. .. ..+....+|+.|...
T Consensus 209 ~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 209 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp CCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred EEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 99886543 44799999999999999999999999987643 00 023346678877765
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-21 Score=174.47 Aligned_cols=124 Identities=25% Similarity=0.448 Sum_probs=110.1
Q ss_pred cCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCC
Q 004297 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (763)
Q Consensus 358 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~ 437 (763)
....|.|.|+|++|+||+++ +..|++||||++.++++.++|+++++++||.|||.|.|.+.++...|.|+|||++..
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCCC---CCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 45679999999999999987 556899999999999999999999999999999999999998888999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+ +|++||++.|+|.++..+. .+||+|.....++ +..|+|+++++|.+
T Consensus 86 ~--------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K--------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E--------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C--------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 5 7899999999999998776 6899998655433 45699999999854
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=168.07 Aligned_cols=125 Identities=20% Similarity=0.297 Sum_probs=107.7
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEeCC
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNC 435 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d~~ 435 (763)
..|.|.|+|++|+||+.+ +. |.+||||++.++++.++|+++++++||+|||.|.|.+.. ....|.|+|||++
T Consensus 5 ~~g~L~v~v~~a~~L~~~---~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKT---KF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE 80 (140)
T ss_dssp BCCEEEEEEEEEESCCCC---SS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCC---CC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence 348999999999999987 55 899999999999999999999999999999999999975 3679999999999
Q ss_pred CCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee-CCCCcccceEEEEEEEEeec
Q 004297 436 HLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL-YPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 436 ~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~-~~~g~~~~G~i~l~~~~~~~ 496 (763)
.++ +|++||++.|+|.++..+.....||+|... ...+....|+|+++++|.+.
T Consensus 81 ~~~--------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 81 TIG--------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp CSS--------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCC--------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 876 789999999999999988888899983322 23344456999999999653
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=169.03 Aligned_cols=123 Identities=24% Similarity=0.356 Sum_probs=108.6
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeec-CCCCCccccEEEEEeeCCCcEEEEEEEeCCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~ 437 (763)
.+.|.|.|+|++|+||+++ +..|.+||||++.++++.++|++++ +++||+|||.|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCc---ccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 3459999999999999987 5568999999999999999999998 89999999999999998888999999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecccc-cCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTL-ETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+ +|++||++.|+|.++ ..+.....||+|.. +.+..|+|+++++|.+.
T Consensus 84 ~--------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~----~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T--------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T--------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred C--------CCceEEEEEEEHHHhccCCCCCcEEEEeec----CCccCEEEEEEEEEEeC
Confidence 6 899999999999999 55666789999971 23457999999999764
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=171.52 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=102.0
Q ss_pred CCcceEEEEEEEccCCCCCccCC-------CCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIG 430 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~-------~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~ 430 (763)
...|.|+|+|++|+||+++|... ..|.+||||++.++++. .||+++++|+||+|||.|.|.+.+ ...|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence 45699999999999999875210 13679999999999876 699999999999999999999876 4689999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccccCC----CeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD----RVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
|||+|.++ +|++||++.|+|.++..+ .....||+|. .+|+|+|+++|.
T Consensus 105 V~D~d~~~--------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG--------YDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS--------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEECCCCC--------CCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEEEE
Confidence 99999886 899999999999999754 7789999994 259999998873
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=167.41 Aligned_cols=128 Identities=23% Similarity=0.355 Sum_probs=105.2
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC-
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG- 439 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~- 439 (763)
.|.|+|+|++|+||+++ |..|.+||||++.++++.++|+++++++||.|||.|.|.+.++...|.|+|||++....
T Consensus 16 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCC---CCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence 49999999999999987 55689999999999999999999999999999999999999888899999999987400
Q ss_pred --CCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 440 --GDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 440 --~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
.++...++|++||++.|+|.++. ....+||+|......+ +..|+|+|+++|.
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 00000017899999999999994 4458999997543322 3469999999885
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=165.57 Aligned_cols=125 Identities=35% Similarity=0.540 Sum_probs=111.1
Q ss_pred eecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCC
Q 004297 30 TYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (763)
Q Consensus 30 ~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~ 109 (763)
..++.++.+.|.|+|++|++|+..+..|.+||||++++++++++|++++++.||.|||+|.|.+.+. ...|.|+|||++
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d 83 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDED 83 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECC
Confidence 4567788999999999999999999889999999999999999999999999999999999999864 578999999999
Q ss_pred CC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEc
Q 004297 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMG 162 (763)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~ 162 (763)
.. ++++||++.+++.++..+ ..+|++|....++ ...|+|++++.+.
T Consensus 84 ~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 84 GDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp TTEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccceEEEEEEEEE
Confidence 98 899999999999999653 3589999977532 4679999998764
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=168.73 Aligned_cols=124 Identities=25% Similarity=0.383 Sum_probs=100.8
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF 432 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~ 432 (763)
+..+.|+|+|++|+||+++ +..|++||||++.+++ ..++|+++++++||+|||.|.|.+.+....|.|+||
T Consensus 17 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~ 93 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF 93 (153)
T ss_dssp TTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEE
Confidence 4568999999999999987 5568999999999863 578999999999999999999999887889999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCe------EeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRV------YTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
|++.++ +|++||++.|+|.++..+.. ..+||+|......+ +..|+|++++.|.
T Consensus 94 d~d~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 94 DENRLT--------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL 152 (153)
T ss_dssp ECCSSS--------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred ECCCCc--------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEe
Confidence 999876 89999999999999976542 25899997654333 4569999999884
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-19 Score=162.79 Aligned_cols=123 Identities=25% Similarity=0.407 Sum_probs=108.2
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCC---CCceEEEEEEeCCCC-
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI---QSSVLEVTVKDKDFV- 111 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~~l~i~V~d~~~~- 111 (763)
..+.|.|+|++|++|+..+. +.+||||++++++++++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 35799999999999999998 9999999999999999999999999999999999998643 368899999999998
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEE---eecCCCCccceEEEEEEEEccc
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYR---LEDRKGDKVRGELMLAVWMGTQ 164 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~---L~~~~~~~~~G~i~l~~~~~~~ 164 (763)
+|++||++.++|.++..+. ....|++ |.+..+....|+|.+++.|.+.
T Consensus 84 ~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 8999999999999997653 2567987 7776666678999999999763
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-19 Score=169.06 Aligned_cols=126 Identities=26% Similarity=0.387 Sum_probs=100.8
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF 432 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~ 432 (763)
...|.|+|+|++|+||+++ +..|++||||++.+++ ..++|+++++++||.|||.|.|.+......|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCc---CCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence 4569999999999999987 5568999999999865 678999999999999999999999987789999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeE-e-----eeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVY-T-----HSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
|++.++ +|++||++.|+|.++..+... . +||+|......+ +..|+|+|++.|.+.
T Consensus 82 d~d~~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENRLT--------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC------------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred ECCCCC--------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 999876 889999999999999776432 1 799997654443 346999999999654
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=161.02 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=99.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEEEeCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGVFDNCH 436 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V~d~~~ 436 (763)
.|.|.|+|++|+||++++..+..|++||||++.+++ ..++|+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 379999999999999853224458899999999985 68999999999999999999999964 46789999999987
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
. +|++||++.|+|.++..+.....||+|.. ...|.|+++++.
T Consensus 82 ~---------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~ 123 (126)
T 1rlw_A 82 V---------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp S---------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred C---------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEe
Confidence 5 57899999999999999999999999953 224666666553
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=161.07 Aligned_cols=129 Identities=29% Similarity=0.447 Sum_probs=102.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
....+.|.|+|++|++|+..+..|.+||||++++++ .+++|++++++.||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 456689999999999999999889999999999974 578999999999999999999999763 5789999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCC-CCCcCeEEEeecCCC-CccceEEEEEEEEcc
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPD-SPLAPQWYRLEDRKG-DKVRGELMLAVWMGT 163 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~ 163 (763)
++.. ++++||++.++|.++....... .....+||+|....+ ....|+|+++++|.+
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 9998 8999999999999998664321 233469999987642 356799999998853
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=162.00 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=100.4
Q ss_pred cceEEEEEEEccCCCCCccCCC--------CCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDG--------RGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~--------~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V 431 (763)
.|.|+|+|++|+||++++.... .+.+||||++.+++.. .+|+++++|+||+|||.|.|.+.++ ..|.|+|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V 83 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence 4899999999999998742100 1349999999998875 6999999999999999999999876 8999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCC--CeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
||+|.++ +|++||++.|+|.++..+ .....|++|. ..|+|+|+++|...
T Consensus 84 ~d~d~~~--------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 84 FHDAPIG--------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS--------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EeCCCCC--------CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 9999876 899999999999999764 4568999984 35999999998653
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=162.62 Aligned_cols=124 Identities=27% Similarity=0.417 Sum_probs=108.4
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
.+.+.|.|+|++|++|+..+..+.+||||++++++++++|++++ ++.||.|||+|.|.+.+ ....|.|+|||++.. +
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~~ 85 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCCC
Confidence 56789999999999999999889999999999999999999998 89999999999999986 578899999999988 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccC
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQA 165 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 165 (763)
|++||++.++|.++.... ....+||+|. .+....|+|++++.|.+..
T Consensus 86 d~~lG~~~i~l~~l~~~~----~~~~~w~~L~--~~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEG----SIPPTAYNVV--KDEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TCCSEEEEEESHHHHHHS----EEEEEEEEEE--ETTEEEEEEEEEEEEEECC
T ss_pred CceEEEEEEEHHHhccCC----CCCcEEEEee--cCCccCEEEEEEEEEEeCC
Confidence 999999999999995331 2246899998 2345689999999987643
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-18 Score=158.33 Aligned_cols=119 Identities=32% Similarity=0.552 Sum_probs=104.8
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC----
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV---- 111 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~---- 111 (763)
..+.|.|+|++|++|+..+..|.+||||++++++++++|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 3589999999999999999999999999999999999999999999999999999999764 47899999999973
Q ss_pred --------CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEc
Q 004297 112 --------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMG 162 (763)
Q Consensus 112 --------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~ 162 (763)
++++||++.++|.++... ..+||+|....+. ...|+|++++.+.
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTLSGE-------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGCCSE-------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccCCCCccEEEEEEEHHHCcCC-------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 899999999999999422 5689999976532 3679999998874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=163.10 Aligned_cols=129 Identities=28% Similarity=0.464 Sum_probs=102.8
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeC
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~ 108 (763)
...+.|.|+|++|++|+..+..|.+||||++++++ .+++|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~-~~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP-QRHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT-TTCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC-CCCEEEEEEEEC
Confidence 45689999999999999999889999999999986 57899999999999999999999975 357899999999
Q ss_pred CCC-CCeeeEEEEEEccccCCCCCC-CCCCcCeEEEeecCCC-CccceEEEEEEEEccc
Q 004297 109 DFV-KDDFMGRVLFDLNEIPKRVPP-DSPLAPQWYRLEDRKG-DKVRGELMLAVWMGTQ 164 (763)
Q Consensus 109 ~~~-~d~~lG~~~i~l~~l~~~~~~-~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~~ 164 (763)
+.. ++++||++.|+|.++...... +.....+||+|....+ .+..|+|.+++.|.+.
T Consensus 84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 998 899999999999999866432 2233458999997653 3467999999999875
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=155.13 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=103.2
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---CE
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QK 397 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~~ 397 (763)
...|+|.+.+.+. +..+.|.|+|++|+||+++ +..|.+||||++.+. ..
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 10 ENLGRIQFSVGYN-------------------------FQESTLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKH 61 (141)
T ss_dssp CCCCEEEEEEEEC-------------------------SSSCCEEEEEEEEESCCCC---SSSSCCCEEEEEEEESCCSS
T ss_pred ceeeEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCCCCCcEEEEEEECCCCc
Confidence 3479999888762 3348999999999999987 556899999999983 45
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
.++|+++++++||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+.....||+|
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L 133 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS--------RNDPIGEVSIPLNKVDLTQMQTFWKDL 133 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSS--------SCEEEEEEEEETTTSCTTSCEEEEECC
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCC--------CCcEEEEEEEEhhhhcCCCCccEEEEC
Confidence 7999999999999999999998642 3578999999999876 889999999999999988888999999
Q ss_pred eee
Q 004297 474 LVL 476 (763)
Q Consensus 474 ~~~ 476 (763)
...
T Consensus 134 ~~~ 136 (141)
T 2d8k_A 134 KPS 136 (141)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=159.43 Aligned_cols=121 Identities=24% Similarity=0.343 Sum_probs=101.8
Q ss_pred CceeEEEEEEEEccccCCCCC----------CCCCCcEEEEEECCEE-EeeecccCCCCCccccceEEEEeeCCCCCeEE
Q 004297 197 PKLWYLRVNVIEAQDLQPTDK----------GRFPEVYVKAQLGNQA-LRTRVSASRTINPMWNEDLMFVAAEPFEEHLI 265 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~----------~~~~dpyv~v~l~~~~-~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~ 265 (763)
...|.|+|+|++|++|+++|. .+.+||||++.++++. .+|+++++ |+||.|||+|.|.+.+ ...|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~--~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD--GGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE--ECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC--CCEEE
Confidence 456899999999999998873 3678999999999865 69999877 9999999999999875 46899
Q ss_pred EEEEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEEcc
Q 004297 266 LTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICLEG 334 (763)
Q Consensus 266 i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 334 (763)
|+|||++..++|++||++.|++.++....+.......||+|+. .|+|++++++.|
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------------~G~i~l~l~~~g 157 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------------EGKVFVVITLTG 157 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------------SCEEEEEEEEC-
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------------CcEEEEEEEEEC
Confidence 9999999999999999999999998754222344789999975 599999998753
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=159.66 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=103.3
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCE
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQK 397 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~ 397 (763)
...|+|++.+.+. +..+.|.|+|++|+||+++ +..|.+||||++.+ +.+
T Consensus 26 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 26 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKK 77 (152)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCS
T ss_pred CCceEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCc---cCCCCcCeEEEEEEEcCCCc
Confidence 3468998888762 3348999999999999987 55689999999998 445
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
.++|+++++++||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+....+||+|.
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS--------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC--------CCcEEEEEEEEchhccCCCCcceEEECC
Confidence 7899999999999999999998874 3679999999999876 7999999999999998888889999996
Q ss_pred e
Q 004297 475 V 475 (763)
Q Consensus 475 ~ 475 (763)
.
T Consensus 150 ~ 150 (152)
T 1rsy_A 150 S 150 (152)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=162.21 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=103.0
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG----- 395 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~----- 395 (763)
...|+|.+++++. +..+.|.|.|++|+||++++. ..|.+||||++.++
T Consensus 7 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d~--~~~~~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 7 FVTGRIAFSLKYE-------------------------QQTQSLVVHVKECHQLAYADE--AKKRSNPYVKTYLLPDKSR 59 (148)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCSBT--TTTBCCEEEEEEEETCCSG
T ss_pred ccceEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCccc--CCCCCCeEEEEEEEcCCcc
Confidence 4579999988863 334899999999999998731 46889999999985
Q ss_pred CEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEe
Q 004297 396 QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472 (763)
Q Consensus 396 ~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~ 472 (763)
...++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....||+
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~ 131 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG--------RNTFLGEAEIQMDSWKLDKKLDHCLP 131 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG--------CEEEEEEEEEEHHHHHHHCCSEEEEE
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc--------CCcEEEEEEEEcccccccCCccceEE
Confidence 3478999999999999999999998753 457999999999876 89999999999999987777789999
Q ss_pred eeeeC
Q 004297 473 LLVLY 477 (763)
Q Consensus 473 L~~~~ 477 (763)
|....
T Consensus 132 L~~~~ 136 (148)
T 3fdw_A 132 LHGKI 136 (148)
T ss_dssp CBCC-
T ss_pred CcCcc
Confidence 97644
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=160.85 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=100.4
Q ss_pred eeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----
Q 004297 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ----- 396 (763)
Q Consensus 322 ~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~----- 396 (763)
..|+|++.+.+. +..+.|.|.|++|+||+++ |..|.+||||++.+.+
T Consensus 28 ~~G~l~~sl~y~-------------------------~~~~~L~V~Vi~a~~L~~~---d~~g~sDPyVkv~l~~~~~~~ 79 (155)
T 2z0u_A 28 GATRIQIALKYD-------------------------EKNKQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSEST 79 (155)
T ss_dssp CCEEEEEEEEEE-------------------------TTTTEEEEEEEEEECGGGT---CCSCCSEEEEEEEEESCSCHH
T ss_pred CcEEEEEEEEEc-------------------------CCCCEEEEEEEEccCcCCc---ccCCCCCEEEEEEEecCCCCC
Confidence 468888888762 3348999999999999987 5678999999999854
Q ss_pred -EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc-CCCeEeeeE
Q 004297 397 -KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSY 471 (763)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~-~~~~~~~~~ 471 (763)
..+||+++++|+||+|||.|.|.+... ...|.|+|||+|..+ +|++||++.|+|.++. .+....+||
T Consensus 80 ~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~--------~~d~iG~~~i~l~~l~~~~~~~~~W~ 151 (155)
T 2z0u_A 80 TCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSH--------LEECLGGAQISLAEVCRSGERSTRWY 151 (155)
T ss_dssp HHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTS--------CEEEEEEEEEECTTSCTTCCCEEEEE
T ss_pred ccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCC--------CCcEEEEEEEEHHHccCCCCccccce
Confidence 269999999999999999999998742 568999999999876 8999999999999995 466778999
Q ss_pred eee
Q 004297 472 PLL 474 (763)
Q Consensus 472 ~L~ 474 (763)
+|.
T Consensus 152 ~L~ 154 (155)
T 2z0u_A 152 NLL 154 (155)
T ss_dssp EEB
T ss_pred Ecc
Confidence 985
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=153.13 Aligned_cols=116 Identities=20% Similarity=0.375 Sum_probs=98.0
Q ss_pred cCceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeeCCCCCCeeccEEEEE-ec--
Q 004297 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFS-KD-- 94 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~-v~-- 94 (763)
++..+.++|++. .+.|.|+|++|++|+. +..+.+||||++++ ...+++|+++++|.||+|||+|.|. +.
T Consensus 7 ~~~~~~~~~~~~--~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~ 83 (134)
T 2b3r_A 7 GSGAVKLSVSYR--NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83 (134)
T ss_dssp CCCEEEEEEEEE--TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHH
T ss_pred ccEEEEEEEeec--CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHH
Confidence 345677777774 4799999999999997 67889999999999 3467899999999999999999999 64
Q ss_pred CCCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 95 RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 95 ~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
++....|.|+|||++.. ++++||++.++|.++..+. ...+||+|.+.
T Consensus 84 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~ 131 (134)
T 2b3r_A 84 TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTAA 131 (134)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC-
T ss_pred HhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC-----CcceeEECCCc
Confidence 33467899999999998 8999999999999997643 36799999875
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=153.96 Aligned_cols=123 Identities=22% Similarity=0.266 Sum_probs=98.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
..|+|+|++|+||+++ |..|++||||++.+++ +.++|+++++++||+|||.|.|.+.++. .|.|+|||++..+.
T Consensus 5 ~~L~V~v~~a~~L~~~---d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEESCCCC---STTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTS
T ss_pred EEEEEEEEEeECCCCC---CCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCC
Confidence 6899999999999987 5668999999999965 7899999999999999999999998764 49999999998750
Q ss_pred CCCCCCCCCCccEEEEEecccc-cCCCeEeeeEeeeeeCCCC-cccceEEEEEEEE
Q 004297 440 GDKAGGARDSRIGKVRIRLSTL-ETDRVYTHSYPLLVLYPNG-VKKMGEIHLAVRF 493 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l-~~~~~~~~~~~L~~~~~~g-~~~~G~i~l~~~~ 493 (763)
...|++||.+.|++.++ ..+.....|++|....+.+ .+..|+|++++..
T Consensus 81 -----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 -----KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp -----STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred -----CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 01278999999999988 2222235789997653322 2347999998764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-18 Score=152.39 Aligned_cols=115 Identities=27% Similarity=0.443 Sum_probs=98.3
Q ss_pred eeEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCC
Q 004297 37 MQYLYVRVVKAKDLPPK---DVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDF 110 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~ 110 (763)
.+.|.|+|++|++|+.+ +..|.+||||++++++ ++++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 36899999999999984 5568999999999986 68899999999999999999999965567899999999998
Q ss_pred CCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEE
Q 004297 111 VKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVW 160 (763)
Q Consensus 111 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 160 (763)
.++++||++.++|.++..+. ....|++|... ..|.|.+++.
T Consensus 82 ~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~----~~g~i~~~le 122 (126)
T 1rlw_A 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV----TEMVLEMSLE 122 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT----EEEEEEEEEE
T ss_pred CCCceeEEEEEEHHHccCCC-----cEEEEEEcCCC----ceEEEEEEEE
Confidence 88999999999999997553 35689999862 2467776654
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=153.69 Aligned_cols=115 Identities=20% Similarity=0.388 Sum_probs=94.4
Q ss_pred eeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CC
Q 004297 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQ 396 (763)
Q Consensus 322 ~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~ 396 (763)
..|+|.+++.+. +..+.|.|+|++|+||+++ +..|++||||++.+ +.
T Consensus 3 ~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~ 54 (129)
T 2bwq_A 3 LSGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDK 54 (129)
T ss_dssp CCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGG
T ss_pred eeEEEEEEEEEc-------------------------cCCCEEEEEEEEeeCCCCC---CCCCCCCCEEEEEEecCCCCC
Confidence 368888888763 2338999999999999987 56689999999998 45
Q ss_pred EEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEeCCCCCCCCCCCCCC--CCccEEEEEecccccCCCeEeee
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNCHLHGGDKAGGAR--DSRIGKVRIRLSTLETDRVYTHS 470 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d~~~~~~~~~~~~~~--d~~lG~v~i~l~~l~~~~~~~~~ 470 (763)
..++|+++++++||+|||.|.|.+.. ....|.|+|||++..+ + |++||++.|+|.++.... ..+|
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~--------~~~~~~lG~~~i~l~~l~~~~-~~~W 125 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR--------EEESEFLGEILIELETALLDD-EPHW 125 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---------------CEEEEEEEEEGGGCCCSS-CEEE
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCc--------CcCCceeEEEEEEccccCCCc-CCcc
Confidence 68999999999999999999999642 2569999999999875 5 899999999999987654 7899
Q ss_pred Eee
Q 004297 471 YPL 473 (763)
Q Consensus 471 ~~L 473 (763)
|+|
T Consensus 126 ~~L 128 (129)
T 2bwq_A 126 YKL 128 (129)
T ss_dssp EEC
T ss_pred EEC
Confidence 998
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=156.91 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=103.1
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCE
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQK 397 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~ 397 (763)
...|+|.+.+++. +..+.|.|+|++|+||+++ +..|.+||||++.+ +.+
T Consensus 18 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 18 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCB---GGGBCCCEEEEEEEESCCSC
T ss_pred cCeEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCC---CCCCCcCcEEEEEEECCCCc
Confidence 4478888888762 3348999999999999987 44588999999998 556
Q ss_pred EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
.++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+....+||+|.
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS--------CCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC--------CCceEEEEEEEHHHccCCCCcceEEECc
Confidence 79999999999999999999998742 479999999999876 8999999999999999998889999995
Q ss_pred e
Q 004297 475 V 475 (763)
Q Consensus 475 ~ 475 (763)
.
T Consensus 142 ~ 142 (143)
T 3f04_A 142 S 142 (143)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-18 Score=159.83 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=96.6
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---eeeeeeeCCCCCCeeccEEEEEecC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---Y---KGTTRHFEKKTNPEWNQVFAFSKDR--IQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~---~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 97 (763)
++.+...+....+.|.|+|++|++|+.++..|.+||||++++.+ . ++||+++++|+||+|||+|.|.+.. +.
T Consensus 31 ~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~ 110 (155)
T 2z0u_A 31 RIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALH 110 (155)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhC
Confidence 34444444456789999999999999999999999999999975 2 7899999999999999999999853 23
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
...|.|+|||++.. ++++||++.++|.++... .....+||+|.+
T Consensus 111 ~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~----~~~~~~W~~L~~ 155 (155)
T 2z0u_A 111 QKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS----GERSTRWYNLLS 155 (155)
T ss_dssp HCEEEEEEEEECTTSCEEEEEEEEEECTTSCTT----CCCEEEEEEEBC
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEHHHccCC----CCccccceEccC
Confidence 57899999999998 899999999999999632 123679999863
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=158.22 Aligned_cols=123 Identities=13% Similarity=0.160 Sum_probs=101.1
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
..+.|+|+|++|++|++. +..+.+||||++.++++.+||+++++++||+|||.|.|.+. +...|.|+|||++.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~---~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~- 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK- 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS-
T ss_pred CceEEEEEEEEeECCCCc---ccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC-
Confidence 458999999999999843 22345999999999999999999999999999999999985 5889999999999876
Q ss_pred CCCCCCCCCCccEEEEEecccccCC---C--eEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETD---R--VYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~---~--~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|.++..+ . ....|++|..... +.+..|+|.+.+.+..
T Consensus 109 -------~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 109 -------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGLQ 161 (173)
T ss_dssp -------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESEE
T ss_pred -------CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeeee
Confidence 899999999999998532 1 2367999987532 3345799999887653
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=154.44 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=100.5
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----C
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----G 395 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~ 395 (763)
...|+|.+.+.+. +..+.|.|.|++|+||+++ +..|.+||||++.+ +
T Consensus 5 ~~~G~i~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 56 (141)
T 1v27_A 5 SSGGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSD 56 (141)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---SSSCCCCEEEECCCSSCCSS
T ss_pred CcccEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCc---CCCCCCCCEEEEEEecCCCC
Confidence 3479999988863 2338999999999999987 55689999999988 4
Q ss_pred CEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEEEeCCCCCCCCCCCCCC--CCccEEEEEecccccCCCeEee
Q 004297 396 QKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGVFDNCHLHGGDKAGGAR--DSRIGKVRIRLSTLETDRVYTH 469 (763)
Q Consensus 396 ~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V~d~~~~~~~~~~~~~~--d~~lG~v~i~l~~l~~~~~~~~ 469 (763)
...++|+++++++||+|||.|.|.+.. ....|.|+|||++..+ + |++||++.|+|.++..+. ..+
T Consensus 57 ~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~--------~~~~~~lG~~~i~l~~l~~~~-~~~ 127 (141)
T 1v27_A 57 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR--------EEESEFLGEILIELETALLDD-EPH 127 (141)
T ss_dssp SSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS--------SCCBCCCEEEEEEGGGCCCSS-EEE
T ss_pred CcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc--------CCCCceEEEEEEEccccCCCC-CCc
Confidence 567999999999999999999999542 2579999999999875 4 899999999999987655 789
Q ss_pred eEeeeee
Q 004297 470 SYPLLVL 476 (763)
Q Consensus 470 ~~~L~~~ 476 (763)
||+|...
T Consensus 128 W~~L~~~ 134 (141)
T 1v27_A 128 WYKLQTH 134 (141)
T ss_dssp EEECBCC
T ss_pred eEECccc
Confidence 9999764
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=151.47 Aligned_cols=111 Identities=30% Similarity=0.597 Sum_probs=91.4
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeeCCCCCCeeccEEEEEec---CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSKD---RIQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~ 97 (763)
.++..|+ ...+.|.|+|++|++|+..+..|.+||||++++ +..+++|++++++.||+|||+|.|.+. ++.
T Consensus 8 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 85 (129)
T 2bwq_A 8 SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 85 (129)
T ss_dssp EEEEEEE--TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGG
T ss_pred EEEEEEc--cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhc
Confidence 4444554 566899999999999999998999999999999 346889999999999999999999952 334
Q ss_pred CceEEEEEEeCCCC-C--CeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 98 SSVLEVTVKDKDFV-K--DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
...|.|+|||++.. + +++||++.++|.++.... ..+||+|+
T Consensus 86 ~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq 129 (129)
T 2bwq_A 86 ERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 129 (129)
T ss_dssp GCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred CCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence 67999999999988 5 999999999999987642 57899984
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=154.98 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=99.4
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---- 396 (763)
...|+|++.+.+. +..+.|.|.|++|+||+++ +..| +||||++.+.+
T Consensus 8 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g-~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 8 SPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAF---SEDG-SDPYVRMYLLPDKRR 58 (142)
T ss_dssp CSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCS---STTC-CCEEEEEEEESCCCS
T ss_pred CCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCC-CCeeEEEEEEcCCCC
Confidence 4579999988763 2348999999999999987 5567 99999998832
Q ss_pred -EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEe
Q 004297 397 -KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472 (763)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~ 472 (763)
..++|+++++++||+|||.|.|.+.. ....|.|+|||++.++ ...|++||++.|+|.++..+....+||+
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~~~iG~~~i~l~~~~~~~~~~~W~~ 132 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL------SKDKGLLGKVLVALASEELAKGWTQWYD 132 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSS------CCSCCCCEEEEEECCCSTTTTCBCCBCC
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcc------ccCCcEEEEEEEecccccccccccceee
Confidence 56899999999999999999999864 2458999999999764 0025799999999999987777889999
Q ss_pred eee
Q 004297 473 LLV 475 (763)
Q Consensus 473 L~~ 475 (763)
|..
T Consensus 133 L~~ 135 (142)
T 2dmg_A 133 LTE 135 (142)
T ss_dssp CBC
T ss_pred ccC
Confidence 975
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-18 Score=157.85 Aligned_cols=119 Identities=24% Similarity=0.377 Sum_probs=99.4
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----C
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----G 395 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~ 395 (763)
...|++.+++++. +..+.|.|+|++|+||+++ + .|.+||||++.+ +
T Consensus 11 ~~~G~~~lsL~y~-------------------------~~~~~L~V~v~~a~~L~~~---d-~g~~Dpyv~v~l~~~~~~ 61 (153)
T 3fbk_A 11 KVQGAGQLRLSID-------------------------AQDRVLLLHIIEGKGLISK---Q-PGTCDPYVKISLIPEDSR 61 (153)
T ss_dssp --CCCCEEEEEEE-------------------------ESSSEEEEEEEEEESCCCC---S-SSCCCEEEEEEEESCSCC
T ss_pred CCCCEEEEEEEEE-------------------------CCCCEEEEEEEEeeCCCCC---C-CCCCCEEEEEEEEcCCCC
Confidence 4578888888763 3348999999999999987 4 488999999988 3
Q ss_pred CEEEeeeeecCCCCCccccEEEEEee--CCCcEEEEEEEeCCCCCCCCCCCCCC-CCccEEEEEecccccC-CCeEeeeE
Q 004297 396 QKWVRTRTIIDSPTPKWNEQYTWEVF--DPCTVITIGVFDNCHLHGGDKAGGAR-DSRIGKVRIRLSTLET-DRVYTHSY 471 (763)
Q Consensus 396 ~~~~~T~~~~~t~~P~wne~~~~~v~--~~~~~l~i~V~d~~~~~~~~~~~~~~-d~~lG~v~i~l~~l~~-~~~~~~~~ 471 (763)
...++|+++++++||+|||.|.|.+. +....|.|+|||++.++ + |++||++.|+|.++.. +.....||
T Consensus 62 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~--------~~d~~lG~~~i~l~~l~~~~~~~~~W~ 133 (153)
T 3fbk_A 62 LRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQS--------RQSGLIGCMSFGVKSLLTPDKEISGWY 133 (153)
T ss_dssp TTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSG--------GGCEEEEEEEEEHHHHTC--CCEEEEE
T ss_pred ccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCC--------CCCcEEEEEEEEHHHhcCCCCccccEE
Confidence 35689999999999999999999984 45567999999999865 5 8999999999999985 77889999
Q ss_pred eeeee
Q 004297 472 PLLVL 476 (763)
Q Consensus 472 ~L~~~ 476 (763)
+|...
T Consensus 134 ~L~~~ 138 (153)
T 3fbk_A 134 YLLGE 138 (153)
T ss_dssp ECBCT
T ss_pred ECCCh
Confidence 99763
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=153.46 Aligned_cols=117 Identities=20% Similarity=0.364 Sum_probs=99.1
Q ss_pred ceeEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCee-eeeeeeCCCCCCeeccEEEEEecCCCCceEEE
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGS-----------CDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEV 103 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~-----------~dPyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i 103 (763)
..+.|.|+|++|++|+..|..+. +||||++++++++ .+|+++.+|.||+|||+|.|.+.+. ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence 35799999999999998774433 9999999998864 6899999999999999999998753 78999
Q ss_pred EEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 104 TVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 104 ~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+|||++.. +|++||++.+++.++..+.. .....|++|+. .|+|++.+.|..
T Consensus 82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~w~~L~~------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 82 AVFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS------SCEEEEEEEEEE
T ss_pred EEEeCCCCCCCCEEEEEEEEHHHhcccCC---CCccEEEEcCC------CeEEEEEEEEEe
Confidence 99999988 89999999999999986531 12468999875 489999998754
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=154.75 Aligned_cols=116 Identities=29% Similarity=0.432 Sum_probs=98.2
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEecC--CCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKDR--IQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~ 100 (763)
++.+...+....+.|.|+|++|++|+..+..+.+||||++++. .++++|++++++.||+|||+|.|.+.. +....
T Consensus 30 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 109 (152)
T 1rsy_A 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 109 (152)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCE
T ss_pred EEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCE
Confidence 4444444445678999999999999999988999999999994 367899999999999999999998843 24578
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
|.|+|||++.. ++++||++.++|.++..+. ...+||+|.+.
T Consensus 110 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~ 151 (152)
T 1rsy_A 110 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA 151 (152)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred EEEEEEECCCCCCCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence 99999999998 8999999999999997553 36799999864
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=153.31 Aligned_cols=117 Identities=28% Similarity=0.470 Sum_probs=99.3
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEec---CCCCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD---RIQSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~ 99 (763)
++.+...+..+.+.|.|+|++|++|+..+..+.+||||++++. .++++|++++++.||+|||+|.|.+. +....
T Consensus 14 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 93 (141)
T 2d8k_A 14 RIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQR 93 (141)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTS
T ss_pred EEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccC
Confidence 4444545556778999999999999999988999999999995 36789999999999999999999852 22357
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. ++++||++.++|.++..+. ....||+|.+..
T Consensus 94 ~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 137 (141)
T 2d8k_A 94 ILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPSG 137 (141)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEECC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCCC
Confidence 899999999998 8999999999999998653 367899999875
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=150.08 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=98.2
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC---C-
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---Q- 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~---~- 396 (763)
...|+|++.+.+. ...+.|.|+|++|++ + |..|.+||||++.+. +
T Consensus 10 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~---~---d~~g~sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 10 NQAPKLHYCLDYD-------------------------CQKAELFVTRLEAVT---S---NHDGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEE-------------------------TTTTEEEEEEEEEEC---C---CCSSCCCEEEEEEEEETTEE
T ss_pred CcceEEEEEEEEe-------------------------CCCCEEEEEEEEEEc---C---CCCCCcceEEEEEEEcCCCc
Confidence 3479999888763 233799999999994 3 667899999999883 2
Q ss_pred EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
..++|+++++++||+|||.|.|.+... ...|.|+|||+|.++ +|++||++.|+|.++..+.....||+|
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~--------~dd~lG~~~i~l~~l~~~~~~~~W~~L 130 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS--------RHSVAGELRLGLDGTSVPLGAAQWGEL 130 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC--------TTSCSEEEEEESSSSSSCTTCCEEEEC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC--------CCcEEEEEEEEcccccCcccccceeeC
Confidence 358999999999999999999998753 568999999999886 899999999999999866677899999
Q ss_pred ee
Q 004297 474 LV 475 (763)
Q Consensus 474 ~~ 475 (763)
..
T Consensus 131 ~~ 132 (138)
T 1wfm_A 131 KT 132 (138)
T ss_dssp CC
T ss_pred cC
Confidence 75
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=157.66 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=103.3
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (763)
...+.|.|+|++|++|+..+..+.+||||++++++++++|+++++|+||+|||+|.|.+.+ ...|.|+|||++.+ +|
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~d 110 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD 110 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCC
Confidence 3457899999999999944434559999999999999999999999999999999999864 78899999999998 89
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC-CccceEEEEEEEEcc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG-DKVRGELMLAVWMGT 163 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~~ 163 (763)
++||++.++|.++.............|++|....+ ....|+|.+.+.+.+
T Consensus 111 d~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 111 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161 (173)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred ceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence 99999999999987543211112357999998642 246799999987654
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=159.67 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=92.0
Q ss_pred ceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEE-eC
Q 004297 362 GVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVF-DN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~-~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~-d~ 434 (763)
|.|.|+|++|+||+++ |. .|.+||||++.+++ ..++|+++++++||+|||.|.|.+......|.|+|| |+
T Consensus 30 ~~L~V~v~~a~~L~~~---d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQK---PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDY 106 (171)
T ss_dssp TEEEEEEEEEESCCCC---C---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence 7999999999999987 43 58899999998843 378999999999999999999998766789999999 99
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~ 476 (763)
+.++ +|++||++.|+|.++..+....+||+|...
T Consensus 107 d~~~--------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMD--------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTC--------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCC--------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9876 789999999999999888888999999764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=151.30 Aligned_cols=103 Identities=14% Similarity=0.239 Sum_probs=91.4
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V 431 (763)
.+.|.|.|++|+||+. +..|.+||||++.+ +...+||+++++++||+|||.|.|. +.. ....|.|+|
T Consensus 19 ~~~L~V~V~~a~~L~~----~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT----EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp TTEEEEEEEEEECCCC----TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred CCEEEEEEEEeeCCCC----CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 3899999999999985 44688999999988 4467899999999999999999999 663 357999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
||++.++ +|++||++.|+|.++..+.....||+|..
T Consensus 95 ~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 95 LSAESLR--------ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EECCSSS--------CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EECCCCC--------CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999876 78999999999999998888899999964
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=150.95 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=98.5
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCC-CCCCCcEEEEEEC---C
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDG-RGTTDAYCVAKYG---Q 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~-~g~~Dpyv~v~~~---~ 396 (763)
...|+|.+.+.+. +..+.|.|+|++|+||+++ +. .|.+||||++.+. .
T Consensus 6 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~~~~~dpyv~v~~~~~~~ 57 (138)
T 1ugk_A 6 SGLGTLFFSLEYN-------------------------FERKAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKK 57 (138)
T ss_dssp CCCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCC---BTTTTBCEEEEEEEEETTTC
T ss_pred CccEEEEEEEEEE-------------------------CCCCEEEEEEEEeeCCCCC---CCCCCCCCCEEEEEEecCCC
Confidence 4479999888763 2348999999999999987 55 3789999999985 3
Q ss_pred EEEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCC-eEeeeE
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDR-VYTHSY 471 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~-~~~~~~ 471 (763)
..++|+++++++||+|||.|.|. +.. ....|.|+|||++.++ +|++||++.|+|.++..+. ....|+
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~ 129 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS--------RDDIIGEVLIPLSGIELSEGKMLMNR 129 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC--------CCCCCEEEEEECTTCCCTTCCEEEEE
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC--------CCcEEEEEEEehhHccCCCCcchhhh
Confidence 68999999999999999999996 553 2468999999999876 8899999999999997654 345678
Q ss_pred eeee
Q 004297 472 PLLV 475 (763)
Q Consensus 472 ~L~~ 475 (763)
+|..
T Consensus 130 ~l~~ 133 (138)
T 1ugk_A 130 EIIS 133 (138)
T ss_dssp ECBS
T ss_pred hhhc
Confidence 8864
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=154.63 Aligned_cols=118 Identities=28% Similarity=0.553 Sum_probs=98.5
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeeCCCCCCeeccEEEEEe-c--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSK-D--RIQ 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v-~--~~~ 97 (763)
++.+...+....+.|.|+|++|++|+..+..+.+||||++++ +.++++|++++++.||+|||+|.|.+ . ++.
T Consensus 9 ~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~ 88 (141)
T 1v27_A 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 88 (141)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGG
T ss_pred EEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhc
Confidence 344444444566899999999999999998999999999999 34688999999999999999999995 2 334
Q ss_pred CceEEEEEEeCCCC-C--CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC
Q 004297 98 SSVLEVTVKDKDFV-K--DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 149 (763)
...|.|+|||++.. + +++||++.++|.++.... ..+||+|.+....
T Consensus 89 ~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~g 137 (141)
T 1v27_A 89 ERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDSG 137 (141)
T ss_dssp TCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSSC
T ss_pred CCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC------CCceEECcccccC
Confidence 57899999999998 5 899999999999987542 6799999987643
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=153.59 Aligned_cols=115 Identities=30% Similarity=0.444 Sum_probs=98.5
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEec--CCCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD--RIQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~ 100 (763)
++.+...+....+.|.|+|++|++|+..+..+.+||||++++. .++++|++++++.||+|||+|.|.+. ++....
T Consensus 22 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 101 (143)
T 3f04_A 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 101 (143)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCE
T ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCE
Confidence 4555555556778999999999999999888999999999994 46889999999999999999999985 334578
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
|.|+|||++.. ++++||++.++|.++..+. ...+|++|++
T Consensus 102 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~ 142 (143)
T 3f04_A 102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred EEEEEEeCCCCCCCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence 99999999998 8999999999999997653 3578999975
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=153.43 Aligned_cols=119 Identities=24% Similarity=0.298 Sum_probs=100.1
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---- 396 (763)
...|+|.+.+.+. +..|.|.|+|++|+||+++ +..|.+||||++.+++
T Consensus 9 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 9 EKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKR 60 (159)
T ss_dssp GCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEE
T ss_pred CcCCeEEEEEEEc-------------------------CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCce
Confidence 4579999988763 3348999999999999987 5568999999998842
Q ss_pred -EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc-----------
Q 004297 397 -KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL----------- 461 (763)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l----------- 461 (763)
..++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||.+.|++..+
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~w~~l~ 132 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDML 132 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC--------CCceEEEEEECCCCCCcHHHHHHHHH
Confidence 468999999999999999999998753 468999999999876 899999999999964
Q ss_pred -cCCCeEeeeEeeee
Q 004297 462 -ETDRVYTHSYPLLV 475 (763)
Q Consensus 462 -~~~~~~~~~~~L~~ 475 (763)
..++...+||+|..
T Consensus 133 ~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 133 ANPRRPIAQWHTLQV 147 (159)
T ss_dssp HSTTCCEEEEEECBC
T ss_pred HCCCCeeeeEEECcC
Confidence 24567789999965
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=148.63 Aligned_cols=119 Identities=22% Similarity=0.342 Sum_probs=99.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C-
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K- 112 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~- 112 (763)
...|.|+|++|++|+..|..|.+||||++++++ ++++|+++++|+||+|||+|.|.+... ..|.|+|||++.. +
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 458999999999999999999999999999975 789999999999999999999999764 3599999999987 4
Q ss_pred --CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC---CccceEEEEEEEE
Q 004297 113 --DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG---DKVRGELMLAVWM 161 (763)
Q Consensus 113 --d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~G~i~l~~~~ 161 (763)
|++||++.+++.++..... ...+|++|....+ ....|+|.+++..
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKD----TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTT----SCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccc----cCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999999998843211 1358999987642 2357999998754
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-18 Score=156.44 Aligned_cols=116 Identities=24% Similarity=0.381 Sum_probs=100.0
Q ss_pred eeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE----
Q 004297 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---- 397 (763)
Q Consensus 322 ~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~---- 397 (763)
..|+|++++.+. .|.|.|+|++|+||+++ |..|.+||||++.+++.
T Consensus 5 ~~G~i~~~l~y~---------------------------~~~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~~ 54 (142)
T 1rh8_A 5 ITGEIQLQINYD---------------------------LGNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQV 54 (142)
T ss_dssp CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCC
T ss_pred cceEEEEEEEEc---------------------------CCEEEEEEEEecCCCCC---CCCCCCCceEEEEEecCCCcc
Confidence 479999888762 27999999999999987 55689999999999763
Q ss_pred ----------EEeeeeecCCCCCccccEEEEE-eeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccC
Q 004297 398 ----------WVRTRTIIDSPTPKWNEQYTWE-VFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET 463 (763)
Q Consensus 398 ----------~~~T~~~~~t~~P~wne~~~~~-v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~ 463 (763)
.++|+++++++||+|||.|.|. +.. ....|.|+|||++.++ +|++||++.|+|.++..
T Consensus 55 ~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~--------~~~~lG~~~i~l~~l~~ 126 (142)
T 1rh8_A 55 MVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS--------SNDFLGEVLIDLSSTSH 126 (142)
T ss_dssp EECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSS--------CEEEEEEEEEETTSCGG
T ss_pred cccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCC--------CCceEEEEEEecccccc
Confidence 4799999999999999999997 542 3679999999999876 78999999999999987
Q ss_pred CCeEeeeEeeee
Q 004297 464 DRVYTHSYPLLV 475 (763)
Q Consensus 464 ~~~~~~~~~L~~ 475 (763)
+.....||+|..
T Consensus 127 ~~~~~~W~~L~~ 138 (142)
T 1rh8_A 127 LDNTPRWYPLKE 138 (142)
T ss_dssp GTTCCEEEECBC
T ss_pred CCCCCeEEECCc
Confidence 777789999965
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=152.88 Aligned_cols=102 Identities=25% Similarity=0.409 Sum_probs=90.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEEC-----CEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~ 434 (763)
+.|.|+|++|+||+++ +..|.+||||++.++ ...++|+++++++||+|||.|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 6899999999999987 556899999999986 3579999999999999999999999763 46899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
+.++ +|++||++.|+|.++..+ ...+||+|..
T Consensus 108 d~~~--------~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 108 DLTS--------RNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp CSSS--------CCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCC--------CCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 9876 899999999999999876 4789999965
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=149.23 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=80.9
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCCCCCccccEEEEEeeCCC---cEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWNEQYTWEVFDPC---TVITIGV 431 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~---~~l~i~V 431 (763)
..|.|.|.|++|+||+++ +..|.+||||++.+++ ..++|+++++++||+|||.|.|.+.... ..|.|+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAM---DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp TTTEEEEEEEEEESCCCC---BTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCc---CCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 348999999999999987 5568999999998853 4689999999999999999999987543 6899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
||++.++ +|++||++.|+|.++.
T Consensus 91 ~d~~~~~--------~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLS--------RNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSS--------CCEEEEEEEESSSSCH
T ss_pred EECCCCC--------CCcEEEEEEEccccCC
Confidence 9999876 8999999999999864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=154.48 Aligned_cols=114 Identities=35% Similarity=0.627 Sum_probs=97.3
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeeeeeeCCCCCCeeccEEE
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY--------------KGTTRHFEKKTNPEWNQVFA 90 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~--------------~~kT~~~~~t~nP~Wne~f~ 90 (763)
..+++.|+ .+.|.|+|++|++|+..+..|.+||||++++++. +++|+++++|.||+|||+|.
T Consensus 9 i~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~ 84 (142)
T 1rh8_A 9 IQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVI 84 (142)
T ss_dssp EEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEE
T ss_pred EEEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEE
Confidence 45666666 5799999999999999998999999999999873 47899999999999999999
Q ss_pred EE-ec--CCCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 91 FS-KD--RIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 91 f~-v~--~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
|. +. ++....|.|+|||++.. ++++||++.++|.++.... ...+||+|.+..
T Consensus 85 f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T 1rh8_A 85 YKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp ECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred ECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC-----CCCeEEECCccC
Confidence 97 43 33467899999999998 8999999999999987542 257999999864
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=151.36 Aligned_cols=118 Identities=23% Similarity=0.398 Sum_probs=100.3
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---- 396 (763)
...|+|.+.+.+. +..+.|.|+|++|+||+++ +..|.+||||++.+++
T Consensus 13 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 13 TTLGALEFSLLYD-------------------------QDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASK 64 (142)
T ss_dssp -CCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCC---CTTSCCCEEEEEEEESCCSG
T ss_pred CccceEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCC---CCCCCCCCEEEEEEEcCCCC
Confidence 4578998888763 2338999999999999987 5568999999999865
Q ss_pred -EEEeeeeecCCCCCccccEEEEE-eeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeE
Q 004297 397 -KWVRTRTIIDSPTPKWNEQYTWE-VFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471 (763)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~~~-v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~ 471 (763)
..++|+++++++||+|||.|.|. +... ...|.|+|||++.++ +|++||++.|+|.++..+.....|+
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~ 136 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFG--------HNEFIGETRFSLKKLKANQRKNFNI 136 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTS--------CEEEEEEEEEEGGGCCTTCCEEEEE
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCC--------CCcEEEEEEEEHHHcCCCCccEEEE
Confidence 67999999999999999999998 5432 368999999999876 7899999999999999888778888
Q ss_pred eee
Q 004297 472 PLL 474 (763)
Q Consensus 472 ~L~ 474 (763)
+|.
T Consensus 137 ~L~ 139 (142)
T 2chd_A 137 CLE 139 (142)
T ss_dssp ECB
T ss_pred ecc
Confidence 874
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=152.16 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=101.2
Q ss_pred CceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCC-ccC---CCCCCCCcEEEEEEC
Q 004297 320 TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPM-KTK---DGRGTTDAYCVAKYG 395 (763)
Q Consensus 320 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~-~~~---~~~g~~Dpyv~v~~~ 395 (763)
....|+|.+.+.+. +..+.|.|+|++|+||++. +.. +..|.+||||++.+.
T Consensus 9 ~~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~ 63 (147)
T 2enp_A 9 KYQLGMLHFSTQYD-------------------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63 (147)
T ss_dssp CCCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEE
T ss_pred CCcceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEE
Confidence 34579999988863 3348999999999999973 321 124689999999985
Q ss_pred ---CEEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEee
Q 004297 396 ---QKWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTH 469 (763)
Q Consensus 396 ---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~ 469 (763)
...++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~ 135 (147)
T 2enp_A 64 PDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS--------RHCVIGKVSVPLCEVDLVKGGHW 135 (147)
T ss_dssp TCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC--------CSCCCEEEEEETTTSCTTTCCCE
T ss_pred eCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc--------CCcEEEEEEEechhcCCCCCccE
Confidence 3578999999999999999999998742 458999999999876 78999999999999987766678
Q ss_pred eEeeee
Q 004297 470 SYPLLV 475 (763)
Q Consensus 470 ~~~L~~ 475 (763)
|++|..
T Consensus 136 w~~L~~ 141 (147)
T 2enp_A 136 WKALIP 141 (147)
T ss_dssp EECCBC
T ss_pred EEEeec
Confidence 999965
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=145.80 Aligned_cols=115 Identities=21% Similarity=0.341 Sum_probs=94.1
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeeCCCCCCeeccEEEEEecC--CCCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~ 99 (763)
++.+...+....+.|.|+|++|++ .+..|.+||||++++.+ .+++|+++++|+||+|||+|.|.+.. +...
T Consensus 14 ~l~~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~ 90 (138)
T 1wfm_A 14 KLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA 90 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCC
Confidence 344444444566899999999993 67788999999999942 36799999999999999999999853 3457
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
.|.|+|||++.+ ++++||++.++|.++.... ...+|++|.+...
T Consensus 91 ~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSGP 135 (138)
T ss_dssp EEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCSC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEcccccCcc-----cccceeeCcCCCc
Confidence 899999999998 8999999999999996432 3679999998643
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=152.29 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=91.7
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---- 396 (763)
...|+|.+.+.+. +..+.|.|.|++|+||+++ +..|.+||||++.+++
T Consensus 21 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 21 EERGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGK 72 (166)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---
T ss_pred CccceEEEEEEEE-------------------------CCCCEEEEEEEEeECCCCc---cCCCCCCcEEEEEEECCCCc
Confidence 4579999888763 2348999999999999987 5568999999999865
Q ss_pred -EEEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc
Q 004297 397 -KWVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462 (763)
Q Consensus 397 -~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~ 462 (763)
..++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~--------~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK--------SNDYIGGCQLGISAKG 134 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCEEEEEEEEETTCCH
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCC--------CCcEEEeEEEecccCC
Confidence 579999999999999999999998752 569999999999876 8899999999999863
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=153.98 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=97.7
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC--C
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI--Q 97 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~--~ 97 (763)
++.+...+....+.|.|+|++|++|+..+ ..+.+||||++++.+ .+++|++++++.||+|||+|.|.+... .
T Consensus 11 ~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~ 90 (148)
T 3fdw_A 11 RIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLA 90 (148)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGG
T ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhC
Confidence 34444444566789999999999999888 578999999999974 478999999999999999999998542 3
Q ss_pred CceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 98 SSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
...|.|+|||++.. ++++||++.++|.++..+. ...+||+|.++.+
T Consensus 91 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 91 QRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK-----KLDHCLPLHGKIS 137 (148)
T ss_dssp GCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC-----CSEEEEECBCC--
T ss_pred ceEEEEEEEECCCCcCCcEEEEEEEEcccccccC-----CccceEECcCccc
Confidence 56799999999998 8999999999999997653 2569999998763
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=150.03 Aligned_cols=115 Identities=23% Similarity=0.417 Sum_probs=95.8
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEe--cCCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSK--DRIQ 97 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v--~~~~ 97 (763)
..+++.|+ ...+.|.|+|++|++|+..+ .+.+||||++++.+ .+++|+++++|.||+|||+|.|.+ .+..
T Consensus 16 ~~lsL~y~--~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~ 92 (153)
T 3fbk_A 16 GQLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQ 92 (153)
T ss_dssp CEEEEEEE--ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTT
T ss_pred EEEEEEEE--CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhC
Confidence 35555555 56679999999999999998 68999999999943 568999999999999999999998 4443
Q ss_pred CceEEEEEEeCCCC-C-CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 98 SSVLEVTVKDKDFV-K-DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 98 ~~~l~i~V~d~~~~-~-d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
..|.|+|||.+.. + |++||++.++|.++.... ....+||+|.+..
T Consensus 93 -~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~----~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 93 -KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD----KEISGWYYLLGEH 139 (153)
T ss_dssp -SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC------CCEEEEEECBCTT
T ss_pred -CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC----CccccEEECCChh
Confidence 4599999999997 5 999999999999997521 2367899999865
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=146.22 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=97.1
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEE-ec--CCCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVT-GSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFS-KD--RIQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~~ 98 (763)
++.+...+....+.|.|+|++|++|+..+.. +.+||||++++.+ ++++|++++++.||+|||+|.|. +. ++..
T Consensus 10 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~ 89 (138)
T 1ugk_A 10 TLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQE 89 (138)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGG
T ss_pred EEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhcc
Confidence 4454555556778999999999999999885 8999999999964 68899999999999999999995 53 2245
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
..|.|+|||++.. ++++||++.++|.++..... ....|++|....
T Consensus 90 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~~l~~~~ 135 (138)
T 1ugk_A 90 LALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG----KMLMNREIISGP 135 (138)
T ss_dssp CEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTC----CEEEEEECBSSS
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEehhHccCCCC----cchhhhhhhcCC
Confidence 7899999999988 89999999999999986532 234578888654
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-17 Score=149.07 Aligned_cols=117 Identities=28% Similarity=0.380 Sum_probs=96.4
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~ 98 (763)
++.+...+....+.|.|+|++|++|+..+..+ +||||++++.+ .+++|+++++|.||+|||+|.|.+.. +..
T Consensus 12 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 90 (142)
T 2dmg_A 12 QIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQR 90 (142)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHH
T ss_pred eEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCc
Confidence 34444444566789999999999999999888 99999999953 57899999999999999999999842 234
Q ss_pred ceEEEEEEeCCCC-C--CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 99 SVLEVTVKDKDFV-K--DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..|.|+|||++.. + +++||++.++|.++.... ...+||+|.+..+
T Consensus 91 ~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 91 RTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSG 138 (142)
T ss_dssp CEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCS
T ss_pred CEEEEEEEECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCC
Confidence 5899999999986 3 479999999999987653 3678999998653
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=152.88 Aligned_cols=113 Identities=27% Similarity=0.352 Sum_probs=95.6
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCCCC
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDV-TGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRIQS 98 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~ 98 (763)
..++..| ..+.|.|+|++|++|+..|. .+.+||||++++.+ .+++|+++++|.||+|||+|.|.+.. ..
T Consensus 21 l~~~l~y----~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~ 95 (171)
T 2q3x_A 21 IQIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QG 95 (171)
T ss_dssp EEEEEEE----ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TT
T ss_pred EEEEEEE----CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CC
Confidence 3455555 46799999999999999985 68999999999965 37899999999999999999999864 46
Q ss_pred ceEEEEEE-eCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 99 SVLEVTVK-DKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 99 ~~l~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
..|.|+|| |++.. ++++||++.++|.++..+. ...+||+|....
T Consensus 96 ~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 141 (171)
T 2q3x_A 96 KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS 141 (171)
T ss_dssp EEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred CEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence 88999999 99988 8999999999999998553 367999999764
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=146.87 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=90.5
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCE-
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQK- 397 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~- 397 (763)
...|+|.+.+.+. +..+.|.|.|++|+||+++ +..|++||||++.+ ++.
T Consensus 14 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 14 SGRGELLVSLCYQ-------------------------STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKR 65 (153)
T ss_dssp --CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEE
T ss_pred ccccEEEEEEEEc-------------------------CCCCEEEEEEEEeECCCCc---CCCCCCCeEEEEEEEeCCeE
Confidence 4578998888763 3348999999999999987 55688999999988 443
Q ss_pred --EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEe
Q 004297 398 --WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472 (763)
Q Consensus 398 --~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~ 472 (763)
.++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.+. +....+||+
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~--------~~~~lG~~~i~l~~~--~~~~~~W~~ 135 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS--------RNEVIGRLVLGATAE--GSGGGHWKE 135 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTS--------CCEEEEEEEESTTCC--SHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCC--------CCcEEEEEEECCCCC--chHHHHHHH
Confidence 57999999999999999999998764 368999999999876 889999999999983 233455666
Q ss_pred eee
Q 004297 473 LLV 475 (763)
Q Consensus 473 L~~ 475 (763)
|..
T Consensus 136 l~~ 138 (153)
T 1w15_A 136 ICD 138 (153)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=147.78 Aligned_cols=115 Identities=26% Similarity=0.457 Sum_probs=96.0
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEE-ecC--C
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFS-KDR--I 96 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~-v~~--~ 96 (763)
..+++.|+ ...+.|.|+|++|++|+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|. +.. +
T Consensus 18 l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 95 (142)
T 2chd_A 18 LEFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDM 95 (142)
T ss_dssp EEEEEEEE--GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred EEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHc
Confidence 34555554 67789999999999999999889999999999976 68899999999999999999998 532 2
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
....|.|+|||++.. ++++||++.++|.++..+. ....|++|+.+
T Consensus 96 ~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~p 141 (142)
T 2chd_A 96 QRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ-----RKNFNICLERV 141 (142)
T ss_dssp HHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC-----CEEEEEECBCC
T ss_pred cCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC-----ccEEEEecccC
Confidence 246899999999998 8899999999999998653 24567777653
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=147.35 Aligned_cols=104 Identities=35% Similarity=0.601 Sum_probs=92.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC-CCceEEEEEEeCCC
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI-QSSVLEVTVKDKDF 110 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~d~~~ 110 (763)
.+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 468999999999999999889999999999974 578999999999999999999998643 24689999999999
Q ss_pred C-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 111 V-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 111 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
. ++++||++.++|.++.... ..+||+|.+.
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~~------~~~W~~L~~~ 140 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ 140 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTCC------EEEEEECBCH
T ss_pred CCCCCEEEEEEEEHHHhCcCc------cCCeEEccCC
Confidence 8 8999999999999997642 5789999875
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-16 Score=147.51 Aligned_cols=102 Identities=24% Similarity=0.386 Sum_probs=89.3
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~ 98 (763)
++.+...+....+.|.|+|++|++|+..+..|.+||||++++++ .+++|++++++.||+|||+|.|.+.. +..
T Consensus 25 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 104 (166)
T 2cm5_A 25 KILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAK 104 (166)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred eEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCC
Confidence 45555555667889999999999999999899999999999986 57899999999999999999999853 235
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIP 127 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~ 127 (763)
..|.|+|||++.. ++++||++.+++.++.
T Consensus 105 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 105 KSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred CEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 6899999999998 8999999999998753
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-16 Score=148.11 Aligned_cols=119 Identities=29% Similarity=0.398 Sum_probs=96.7
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~ 98 (763)
++.+...+.+..+.|.|+|++|++|+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|.+.. +..
T Consensus 13 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 92 (159)
T 1tjx_A 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK 92 (159)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred eEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCC
Confidence 45555555567789999999999999999889999999999963 46899999999999999999999853 235
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEcccc----------CCCCCCCCCCcCeEEEeecCC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEI----------PKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l----------~~~~~~~~~~~~~w~~L~~~~ 147 (763)
..|.|+|||++.. ++++||++.+++..+ .... .....+||+|....
T Consensus 93 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~---~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 93 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP---RRPIAQWHTLQVEE 149 (159)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST---TCCEEEEEECBCHH
T ss_pred cEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC---CCeeeeEEECcCcc
Confidence 6899999999998 899999999999854 2111 12356899988653
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=147.45 Aligned_cols=117 Identities=25% Similarity=0.284 Sum_probs=95.2
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCC-CC------CCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPK-DV------TGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDR 95 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~-~~------~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~ 95 (763)
++.+...+....+.|.|+|++|++|+.. +. .+.+||||++++.+ ++++|++++++.||+|||+|.|.+..
T Consensus 14 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (147)
T 2enp_A 14 MLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPF 93 (147)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCH
T ss_pred EEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeCh
Confidence 4444444456778999999999999984 43 35899999999974 57899999999999999999999853
Q ss_pred --CCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 96 --IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 96 --~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
+....|.|+|||++.. ++++||++.++|.++.... ....|+.|.++.
T Consensus 94 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~ 143 (147)
T 2enp_A 94 LEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK-----GGHWWKALIPSG 143 (147)
T ss_dssp HHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTT-----CCCEEECCBCCC
T ss_pred HHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCC-----CccEEEEeecCC
Confidence 2246899999999988 8999999999999997553 246899998753
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=144.39 Aligned_cols=102 Identities=27% Similarity=0.453 Sum_probs=87.1
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecCC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDRI--QS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~ 98 (763)
++.+...+....+.|.|+|++|++|+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|.+... ..
T Consensus 4 ~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~ 83 (138)
T 3n5a_A 4 ELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRE 83 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCc
Confidence 34444444567789999999999999999889999999999975 478999999999999999999998532 24
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIP 127 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~ 127 (763)
..|.|+|||++.. +|++||++.+++.++.
T Consensus 84 ~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 84 TTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred eEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 6899999999998 8999999999998754
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=145.09 Aligned_cols=100 Identities=27% Similarity=0.394 Sum_probs=81.0
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeeeeCCCCCCeeccEEEEEecCC--CC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--NY---KGTTRHFEKKTNPEWNQVFAFSKDRI--QS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~~---~~kT~~~~~t~nP~Wne~f~f~v~~~--~~ 98 (763)
++.+...+....+.|.|+|++|++|+..+..+.+||||++++. +. +++|++++++.||+|||+|.|.+... ..
T Consensus 18 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 97 (153)
T 1w15_A 18 ELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEE 97 (153)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTT
T ss_pred EEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCc
Confidence 4555555556778999999999999999988999999999994 32 67999999999999999999998543 34
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccc
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNE 125 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~ 125 (763)
..|.|+|||++.. ++++||++.+++..
T Consensus 98 ~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 98 ISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred eEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 7899999999988 89999999999987
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=137.57 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=73.9
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeec-CCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
.+.|.|+|++|++|.. .|.+||||++. ++..+|++++ +++||+|||.|.|.+.++...|.|+|||+| ++
T Consensus 4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 73 (131)
T ss_dssp CEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred ceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence 4899999999998852 46899999999 3345666665 699999999999999988788999999999 65
Q ss_pred CCCCCCCCCCccEEEEEecccccC
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLET 463 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~ 463 (763)
+|++||++.|+|.++..
T Consensus 74 -------~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 74 -------WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp -------CEEEEEEEEEEGGGSCB
T ss_pred -------CCCeEEEEEEEHHHhhh
Confidence 79999999999999854
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=132.12 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=100.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecC--CCCceEEEEEEeCCCC-CCe
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDR--IQSSVLEVTVKDKDFV-KDD 114 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~--~~~~~l~i~V~d~~~~-~d~ 114 (763)
-|+|+|.+|.+|+ |.+|||+++.+.+.+++|++++ ++.||+|||+|.|++.. ..+..|.|.|||++++ +++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr 96 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK 96 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence 4889999999998 5789999999999999999998 69999999999999843 3478999999999999 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 115 FMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 115 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+||++.++|+++..... ..-+-+|.+.++....++|.+++.|.+
T Consensus 97 lIG~~~i~Lq~lv~~~~-----l~l~~~LvD~n~~~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 97 LIGTFRMVLQKVVEENR-----VEVSDTLIDDNNAIIKTSLSMEVRYQA 140 (144)
T ss_dssp EEEEEEEESHHHHHHSE-----EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEEEEEhHHhccCCe-----EEEeecccCCCCCccccEEEEEEEecC
Confidence 99999999999997642 224568888887777799999999876
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-15 Score=133.81 Aligned_cols=88 Identities=28% Similarity=0.378 Sum_probs=73.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (763)
.++.|.|+|++|++|.. .|.+||||+++ .+..+|+++. ++.||+|||+|.|.+.+. ...|.|+|||++ . +|
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 75 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 75 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCE
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCC
Confidence 35799999999998852 57899999999 3444565554 699999999999999764 567999999999 6 99
Q ss_pred eeeEEEEEEccccCCCC
Q 004297 114 DFMGRVLFDLNEIPKRV 130 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~ 130 (763)
++||++.|+|.++....
T Consensus 76 d~iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 76 TMVGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEEEGGGSCBCS
T ss_pred CeEEEEEEEHHHhhhcC
Confidence 99999999999987543
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=139.53 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=89.1
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeec-CCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCC
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHG 439 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~ 439 (763)
.+.|.|+|++|++|.. .|++||||+++ .+..+|++++ +++||+|||.|.|.+.+....|.|+|||+| ++
T Consensus 13 ~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 82 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 82 (167)
T ss_dssp CCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS-
T ss_pred eEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC-
Confidence 5899999999998842 47899999999 3346777776 699999999999999988889999999999 65
Q ss_pred CCCCCCCCCCccEEEEEecccccCCC------eEeeeEeeeeeCCC--Cc--ccceEEEEEEEEee
Q 004297 440 GDKAGGARDSRIGKVRIRLSTLETDR------VYTHSYPLLVLYPN--GV--KKMGEIHLAVRFTC 495 (763)
Q Consensus 440 ~~~~~~~~d~~lG~v~i~l~~l~~~~------~~~~~~~L~~~~~~--g~--~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|.++.... ....||++.....+ |. ...|.+.++++|..
T Consensus 83 -------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~ 141 (167)
T 2cjs_A 83 -------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFEL 141 (167)
T ss_dssp -------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEC
T ss_pred -------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeec
Confidence 7999999999999985432 33455555432211 11 12456777777743
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=130.69 Aligned_cols=118 Identities=16% Similarity=0.261 Sum_probs=101.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeec-CCCCCccccEEEEEeeC---CCcEEEEEEEeCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHL 437 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~ 437 (763)
-.|+|.|.+|.||+ |++|||+++.+.+.+++|+++. .+.||+|||.|+|++.. ....|.|.|+|++.+
T Consensus 21 msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 21 MALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 47899999999997 5799999999999999999998 59999999999999984 478999999999998
Q ss_pred CCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeecc
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 497 (763)
+ +|.+||++.|+|.++..+....-+-+|.+.+.+ ...+.|.++++|.++.
T Consensus 93 ~--------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 93 F--------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQAAD 142 (144)
T ss_dssp S--------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEETT
T ss_pred c--------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecCCC
Confidence 7 899999999999999877766677788764432 2348899999987753
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=167.65 Aligned_cols=119 Identities=26% Similarity=0.440 Sum_probs=103.1
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHL 437 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~ 437 (763)
...|.|.|+|++|+||+++ |..|++||||++.+++..++|+++++++||.|||.|.|.+.++ ...|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~---d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKAC---KPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCC---CCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4568999999999999987 6678999999999999999999999999999999999999876 46899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecccccCCCe----EeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLETDRV----YTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+ +|++||++.++|.++..+.. ...|++|.. +..|+|++++++.
T Consensus 461 ~--------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S--------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWVRFDLQ 507 (510)
T ss_dssp S--------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SSSCEEEEEEEEE
T ss_pred C--------CCCceEEEEEEHHHhccccCCCCceeeeecCCC------CCCceEEEEEEEE
Confidence 6 89999999999999976543 678999853 2459999988764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=160.95 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=97.5
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDNCH 436 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~~~ 436 (763)
...|.|+|.|++|+||+. |..|++||||+|.++++.+||+++++++||+|||.|.|.+.+ ....|.|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~----D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG----DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC----SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc----ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 346899999999999986 556899999999999999999999999999999999998753 57889999999998
Q ss_pred CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
.+ +||+||.+.++|.. | ....|.+|. .|.|++.+++++.
T Consensus 467 ~~--------~dD~LG~~~~~L~~---g-~~~~~~~l~---------~G~l~~~~~~~c~ 505 (540)
T 3nsj_A 467 GW--------DDDLLGSCDRSPHS---G-FHEVTCELN---------HGRVKFSYHAKCL 505 (540)
T ss_dssp SS--------CCEEEEEEEECCCS---E-EEEEEEECS---------SSEEEEEEEEEEC
T ss_pred CC--------CCCEEEEEEEEeeC---C-cEEEEEEcC---------CeEEEEEEEEEEC
Confidence 76 78999999999983 3 356788862 3999999888773
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=136.42 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=88.0
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CC
Q 004297 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KD 113 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d 113 (763)
.++.|+|+|++|+++. ..+.+||||+++ .+..+|+++. ++.||+|||+|.|.+.+. ...|.|+|||++ . +|
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 84 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 84 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCC
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCC
Confidence 3679999999999884 257899999999 4445676665 699999999999999864 567999999999 6 99
Q ss_pred eeeEEEEEEccccCCCCCCCC--CCcCeEEEeecCCCC------ccceEEEEEEEEc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDS--PLAPQWYRLEDRKGD------KVRGELMLAVWMG 162 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~--~~~~~w~~L~~~~~~------~~~G~i~l~~~~~ 162 (763)
++||++.|+|.++..... +. ...+.|+.+....|+ ...|.+++.+++.
T Consensus 85 d~iG~~~i~L~~l~~~~~-~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 85 TMVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEEGGGSCBCSS-CCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEHHHhcccCc-CCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 999999999999875431 11 122344554433332 1345577777764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=155.33 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=94.8
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEec-CCCCceEEEEEEeCCCC-C
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKD-RIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~~l~i~V~d~~~~-~ 112 (763)
..++.|.|+|++|++|+. |..|.+||||+|++++++++|+++++++||+|||+|.|.+. ......|.|+|||+|.. +
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~ 469 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD 469 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSC
T ss_pred CcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCC
Confidence 457899999999999998 88999999999999999999999999999999999999863 23578899999999998 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
||+||++.++|.. + ....|++|.. |+|.+++.+.
T Consensus 470 dD~LG~~~~~L~~---g------~~~~~~~l~~-------G~l~~~~~~~ 503 (540)
T 3nsj_A 470 DDLLGSCDRSPHS---G------FHEVTCELNH-------GRVKFSYHAK 503 (540)
T ss_dssp CEEEEEEEECCCS---E------EEEEEEECSS-------SEEEEEEEEE
T ss_pred CCEEEEEEEEeeC---C------cEEEEEEcCC-------eEEEEEEEEE
Confidence 8999999999872 2 1357887653 7888876543
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=156.88 Aligned_cols=123 Identities=28% Similarity=0.398 Sum_probs=105.5
Q ss_pred CceeEEEEEEEEccccCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCccccceEEEEeeCCCCCeEEEEEEEccCCCC
Q 004297 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFEEHLILTVEDRVAPNK 276 (763)
Q Consensus 197 p~~g~L~V~i~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~d~d~~~~ 276 (763)
+..+.|+|+|++|++|+..+.+|.+||||++.++++.++|+++++ +.||.|||.|.|.+..+....|.|+|||+|..++
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~-t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~ 462 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQD-TLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP 462 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSS-CSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCC-CCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence 456789999999999999999999999999999999999999987 9999999999999987777889999999999999
Q ss_pred CceeEEEEEeccccccccCCCCCCceeEEcccccccccccccCCceeceEEEEEEE
Q 004297 277 DEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTKFASRIHMRICL 332 (763)
Q Consensus 277 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~G~l~l~l~~ 332 (763)
|++||++.+++.++............|+.|... ..|.|.+.+.+
T Consensus 463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------------~~G~i~l~~~l 506 (510)
T 3jzy_A 463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------------PTGEVWVRFDL 506 (510)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------------SSCEEEEEEEE
T ss_pred CCceEEEEEEHHHhccccCCCCceeeeecCCCC------------CCceEEEEEEE
Confidence 999999999999987532222236789998764 36888887765
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-15 Score=164.86 Aligned_cols=119 Identities=20% Similarity=0.355 Sum_probs=20.3
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-EEeeeeecCC---CCCccccEEEEEeeCCCcEEEEEEEeC-C
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIIDS---PTPKWNEQYTWEVFDPCTVITIGVFDN-C 435 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-~~~T~~~~~t---~~P~wne~~~~~v~~~~~~l~i~V~d~-~ 435 (763)
.|.|+|+|++|+||+++ | ||||++.++++ +.||+++++| +||+|||.|.|.+......|.|+|||+ |
T Consensus 10 ~~~L~V~VieAk~L~~~---d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d 81 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPK---K-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD 81 (483)
T ss_dssp EECC-----------------------------------------------------CCEECC-----------------
T ss_pred ccEEEEEEEEcCCcCCC---C-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence 47999999999999875 2 99999999886 6799999999 999999999999766578999999994 4
Q ss_pred C---CCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCC---------------------CCcccceEEEEEE
Q 004297 436 H---LHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYP---------------------NGVKKMGEIHLAV 491 (763)
Q Consensus 436 ~---~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~i~l~~ 491 (763)
. .+ +|++||++.|++.++..+....+||+|.+... +|.+..|.|+|++
T Consensus 82 ~~~~~~--------~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v 153 (483)
T 3bxj_A 82 KKRKKD--------KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKA 153 (483)
T ss_dssp ---------------------------------CCEECC--------------------------------------CEE
T ss_pred ccccCC--------CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEE
Confidence 2 33 78999999999999998888899999965443 1223468999999
Q ss_pred EEee
Q 004297 492 RFTC 495 (763)
Q Consensus 492 ~~~~ 495 (763)
+|.+
T Consensus 154 ~~~~ 157 (483)
T 3bxj_A 154 RYQT 157 (483)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 9865
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=154.84 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=100.3
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-----EEEeeeeecCC-CCCccccEEEEEeeCC-CcEEEEEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDS-PTPKWNEQYTWEVFDP-CTVITIGVF 432 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-----~~~~T~~~~~t-~~P~wne~~~~~v~~~-~~~l~i~V~ 432 (763)
..+.|+|+|++|++|++++. +..|.+||||+|.+.+ ...||++++++ +||+|||.|.|.+..+ ...|.|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 56899999999999998732 1357899999999844 67999999997 9999999999999876 468999999
Q ss_pred eCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEEe
Q 004297 433 DNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (763)
Q Consensus 433 d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 494 (763)
|+|..+ +|++||++.|+|..|..|. +|++|.+.. |.. ..|+|.+.++|.
T Consensus 574 D~D~~~--------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~--g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDSSS--------KNDFIGQSTIPWNSLKQGY---RHVHLLSKN--GDQHPSATLFVKISIQ 623 (624)
T ss_dssp ECCSSS--------CCEEEEEEEEEGGGBCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EcCCCC--------CCceeEEEEEEHHHcCCCc---EEEeCCCCC--cCCCCceEEEEEEEEE
Confidence 999876 8999999999999998873 599997643 332 357888877763
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=152.85 Aligned_cols=119 Identities=23% Similarity=0.387 Sum_probs=102.6
Q ss_pred ceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeeeCCC-CCCeeccEEEEEecCCCCceEEEEEEe
Q 004297 36 QMQYLYVRVVKAKDLPPKDV--TGSCDPYVEVKMGN-----YKGTTRHFEKK-TNPEWNQVFAFSKDRIQSSVLEVTVKD 107 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~~--~~~~dPyv~v~~~~-----~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~d 107 (763)
..+.|.|+|++|++|+..+. .+.+||||+|.+.+ .++||++++++ .||+|||+|.|.+..+....|.|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 45789999999999998873 68999999999954 57899999887 999999999999976556789999999
Q ss_pred CCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEc
Q 004297 108 KDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (763)
Q Consensus 108 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (763)
++.. ++++||++.++|..|..+ .+|++|.+..|+. ..|.|.+.+.+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9988 899999999999999754 3699999988775 457888887663
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=156.15 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=93.0
Q ss_pred CCcceEEEEEEEccCCCC---CccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeC-CCcEEEEEE
Q 004297 359 SSIGVLELGILNAQGLMP---MKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFD-PCTVITIGV 431 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~---~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~V 431 (763)
.+.|.|+|+|++|+||++ + |..|++||||++.+++ ..+||+++++++||+|||.|.|.+.+ ....|.|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~---D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFG---DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHH---HHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCcccc---CCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEE
Confidence 456999999999999997 5 4458899999999984 67999999999999999999999987 467999999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||+|.+ .|++||++.|+|.++..+.....|++|.
T Consensus 92 ~D~D~~---------~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 92 MDANYV---------MDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EECCSS---------SCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred EECCCC---------CCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 999886 3789999999999999888889999994
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=154.33 Aligned_cols=107 Identities=28% Similarity=0.481 Sum_probs=95.0
Q ss_pred CceeEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeC
Q 004297 35 EQMQYLYVRVVKAKDLPP---KDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDK 108 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~---~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~ 108 (763)
.+.+.|.|+|++|++|+. .|..|.+||||++++++ .++||++++++.||+|||+|.|.+.......|.|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 457899999999999998 77788999999999985 678999999999999999999999876678899999999
Q ss_pred CCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
|...|++||++.++|.++..+. ...+|++|...
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~-----~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTC-----CCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCC-----ceEEEEecCCC
Confidence 9877999999999999997553 25689999864
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-13 Score=147.81 Aligned_cols=100 Identities=21% Similarity=0.388 Sum_probs=13.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeeCCC---CCCeeccEEEEEecCCCCceEEEEEEeC-C--
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-KGTTRHFEKK---TNPEWNQVFAFSKDRIQSSVLEVTVKDK-D-- 109 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~kT~~~~~t---~nP~Wne~f~f~v~~~~~~~l~i~V~d~-~-- 109 (763)
.+.|+|+|++|++|+++| ||||+++++++ ..||+++++| .||+|||+|.|.+... ...|.|+|||. +
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCcc
Confidence 367999999999999876 99999999985 6799999998 9999999999996543 57899999994 4
Q ss_pred -CC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 110 -FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 110 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.. +|++||++.|++.++..+. ...+||+|....
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~ 118 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPT 118 (483)
T ss_dssp ----------------------------CCEECC------
T ss_pred ccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCC
Confidence 24 8999999999999998653 357899996543
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-11 Score=138.96 Aligned_cols=102 Identities=25% Similarity=0.441 Sum_probs=90.4
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCCCCCccccEEEEEeeC--CCcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFD--PCTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~V~d~ 434 (763)
+.|.|.|++|++|.++ |..|.+||||++.+ +....+|+++++++||+|||.|.|.+.. ....|.|+|||+
T Consensus 172 ~~L~V~v~~a~~L~~~---d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~ 248 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW 248 (674)
T ss_dssp SEEEEEEEEEESCCCC---STTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred ceeeeeeecccccCCC---CcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeec
Confidence 7899999999999988 66789999999988 4456899999999999999999999874 356799999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|..+ +|++||.+.++++++..+. ..+||+|..
T Consensus 249 d~~~--------~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 249 DLTS--------RNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp CSSS--------CCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred cccc--------ccccccccccchhhhccCC-cccceeecc
Confidence 9886 8999999999999998765 489999965
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.8e-11 Score=136.45 Aligned_cols=114 Identities=32% Similarity=0.580 Sum_probs=95.9
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeeCCCCCCeeccEEEEEecCC-CCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~ 99 (763)
++.+.+.+. .+.|.|+|++|++|..+|..|.+||||++++ ...+.+|+++++++||.|||+|.|.+... ...
T Consensus 162 ~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~ 239 (674)
T 3pfq_A 162 RIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDR 239 (674)
T ss_dssp EEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTC
T ss_pred cccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccc
Confidence 344444443 4689999999999999999999999999999 33578999999999999999999998532 345
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. +|++||++.+++.++.... ..+|+.|....
T Consensus 240 ~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~~ 282 (674)
T 3pfq_A 240 RLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 282 (674)
T ss_dssp EEEEEEEECCSSSCCEECCBCCCBTTHHHHCC------EEEEEECBCTT
T ss_pred eeeeEEeecccccccccccccccchhhhccCC------cccceeecccc
Confidence 699999999998 9999999999999987542 47899998764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-10 Score=130.76 Aligned_cols=111 Identities=19% Similarity=0.311 Sum_probs=93.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeeCC-CCCCeeccE-EEEE-ecCCCCceEEEEEEe
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-------YKGTTRHFEK-KTNPEWNQV-FAFS-KDRIQSSVLEVTVKD 107 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------~~~kT~~~~~-t~nP~Wne~-f~f~-v~~~~~~~l~i~V~d 107 (763)
+.|.|+|++|++|+.. .+||||+|.+.+ .+++|+++.+ +.||+|||+ |.|. +..+....|.|+|||
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 6899999999999753 589999999975 5679999975 699999998 9998 755555789999999
Q ss_pred CCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccc-eEEEEEEEEcc
Q 004297 108 KDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVR-GELMLAVWMGT 163 (763)
Q Consensus 108 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-G~i~l~~~~~~ 163 (763)
.+ +++||++.++|..|..+ -++++|.+..|+... +.|.+.+.+..
T Consensus 726 ~d---ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 726 EN---GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp TT---SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cC---CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 85 79999999999998854 357899998887644 88888887764
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=132.27 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=93.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeeCC-CCCCeecc-EEEEE-ecCCCCceEEEEEEeC
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHFEK-KTNPEWNQ-VFAFS-KDRIQSSVLEVTVKDK 108 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~-t~nP~Wne-~f~f~-v~~~~~~~l~i~V~d~ 108 (763)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++.+ +.||+||| +|.|. +..+....|.|+|||.
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 4799999999999853 589999999965 3579999975 69999999 69998 6555567899999998
Q ss_pred CCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEcc
Q 004297 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMGT 163 (763)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~ 163 (763)
+ +++||++.++|..|..+ -++++|.+..|+. ..|.|.+.+.+..
T Consensus 801 d---ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T---TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 89999999999998754 3578999988875 5689999988764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.07 E-value=7.4e-10 Score=129.39 Aligned_cols=110 Identities=21% Similarity=0.304 Sum_probs=89.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeee-eeC-CCCCCeecc-EEEE-EecCCCCceEEEEEE
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTR-HFE-KKTNPEWNQ-VFAF-SKDRIQSSVLEVTVK 106 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~-~~~-~t~nP~Wne-~f~f-~v~~~~~~~l~i~V~ 106 (763)
.+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ +++ ++.||+||| +|.| .+..+....|.|+||
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 4789999999999984 4689999999943 367899 885 469999999 7999 776555568999999
Q ss_pred eCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEE
Q 004297 107 DKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWM 161 (763)
Q Consensus 107 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~ 161 (763)
|++ +++||++.++|..|..+ .+|++|.+..|.. ..+.|.+.+.+
T Consensus 753 D~d---~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 753 EEG---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp ETT---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EeC---CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEE
Confidence 987 79999999999999754 3689999887764 34777777765
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.2e-10 Score=129.18 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=88.7
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC-------EEEeeeeecC-CCCCccccE-EEEE-eeCC-CcEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-------KWVRTRTIID-SPTPKWNEQ-YTWE-VFDP-CTVITI 429 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~-------~~~~T~~~~~-t~~P~wne~-~~~~-v~~~-~~~l~i 429 (763)
.+.|.|+|++|++|+. .++||||+|.+.+ +.+||+++++ ++||+|||. |.|. |..+ ...|.|
T Consensus 649 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf 721 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI 721 (816)
T ss_dssp CEEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEE
Confidence 4789999999999974 2689999999854 5789999987 599999998 9998 7655 468999
Q ss_pred EEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEEe
Q 004297 430 GVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (763)
Q Consensus 430 ~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 494 (763)
.|||+ .|++||++.|+|+.|..|- +++||.+.. |.. ..++|.+.+.+.
T Consensus 722 ~V~D~------------dddfiG~~~ipL~~L~~Gy---R~vpL~~~~--g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 722 IVSEE------------NGKFIGHRVMPLDGIKPGY---RHVPLRNES--NRPLGLASVFAHIVAK 770 (816)
T ss_dssp EEEET------------TSCEEEEEEEESTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EEEec------------CCCeeeEEEEEHHHcCCcc---eEEEEeCCC--CCCCCceEEEEEEEEE
Confidence 99997 3579999999999999873 478997643 332 237788777765
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=131.17 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=87.7
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------EEEeeeeecC-CCCCcccc-EEEEE-eeCC-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIID-SPTPKWNE-QYTWE-VFDP-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~------~~~~T~~~~~-t~~P~wne-~~~~~-v~~~-~~~l~i~V 431 (763)
..|.|+|++|++|+. .++||||+|.+.+ ..+||+++.+ ++||+||| .|.|. |..+ ...|.|+|
T Consensus 725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V 797 (885)
T 3ohm_B 725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797 (885)
T ss_dssp EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence 489999999999974 2689999999854 2479999987 59999999 69998 6654 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEEe
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRFT 494 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 494 (763)
||+| |++||++.|+|..|..|- +++||.+.. |.. ..|+|.+.+.+.
T Consensus 798 ~D~d------------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~--g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 798 FEEG------------GKFVGHRILPVSAIRSGY---HYVCLRNEA--NQPLCLPALLIYTEAS 844 (885)
T ss_dssp EETT------------TEEEEEEEEETTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EcCC------------ccEEeeEEEEHHHcCCCc---eEEEecCCC--CCccCceEEEEEEEEE
Confidence 9973 579999999999998873 468886643 332 358888888875
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=128.15 Aligned_cols=110 Identities=16% Similarity=0.306 Sum_probs=86.8
Q ss_pred CcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC------EEEeee-eecC-CCCCcccc-EEEE-EeeCC-CcEEE
Q 004297 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ------KWVRTR-TIID-SPTPKWNE-QYTW-EVFDP-CTVIT 428 (763)
Q Consensus 360 ~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~------~~~~T~-~~~~-t~~P~wne-~~~~-~v~~~-~~~l~ 428 (763)
..|.|.|.|++|++|+. +++||||+|.+.+ +++||+ ++++ ++||+||| .|.| .|..+ -..|.
T Consensus 676 ~~~~L~V~Visa~~L~~-------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr 748 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 748 (799)
T ss_dssp TCEEEEEEEEEEESCCS-------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEE
T ss_pred eeeeEEEEEEeccccCc-------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEE
Confidence 45799999999999974 3699999998832 358999 8875 69999999 6999 78655 45899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEE
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 493 (763)
|.|||++ +++||.+.|+|+.|..| -+|++|.+.. |.. ..+.|.+.+++
T Consensus 749 ~~V~D~d------------~d~iG~~~ipl~~L~~G---~r~v~L~~~~--g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 749 VAVMEEG------------NKFLGHRIIPINALNSG---YHHLCLHSES--NMPLTMPALFIFLEM 797 (799)
T ss_dssp EEEEETT------------TEEEEEEEEEGGGBCCE---EEEEEEECTT--CCEEEEEEEEEEEEE
T ss_pred EEEEEeC------------CCccceEeeehhhcCCC---cEEEeccCCC--CCCCCceEEEEEEEE
Confidence 9999973 57999999999999887 3588996543 322 34777777765
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-08 Score=85.33 Aligned_cols=106 Identities=14% Similarity=0.289 Sum_probs=83.2
Q ss_pred ceEEEEEEEccC--CCCCccCCCCCCCCcEEEEEECCEE----Eee-eeecCCCCCccccEEEEEeeCCCcEEEEEEEeC
Q 004297 362 GVLELGILNAQG--LMPMKTKDGRGTTDAYCVAKYGQKW----VRT-RTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~--L~~~~~~~~~g~~Dpyv~v~~~~~~----~~T-~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~ 434 (763)
+.|+|.+.++.- |++ .....||||.|.+.... .+| .+.++|..|.||++|.-.|.+ ...|.|.||+.
T Consensus 6 ~flRi~~~~~~~~~~~~-----~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~ 79 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQA-----EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA 79 (126)
T ss_dssp CEEEEEEEEEECSSCCC-----SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEE
T ss_pred ccEEeeeccccccccCC-----ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcC
Confidence 577888766653 332 12359999999886543 255 778889999999999999887 67899999974
Q ss_pred CCCCCCCCCCCCCCCccEEEEEeccccc-----CCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
..++++.+.|.+.+|. .+....-|.+|. ..|+|++.+++
T Consensus 80 ------------a~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~ 123 (126)
T 1yrk_A 80 ------------AEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQY 123 (126)
T ss_dssp ------------TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred ------------CCCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEE
Confidence 2379999999999996 466789999993 47999998886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-08 Score=86.16 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=84.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEE----Eee-eeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW----VRT-RTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCH 436 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~----~~T-~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~ 436 (763)
+.|+|.+.++.-.+-+. -.....||||.|.+.... .+| .++++|..|.||+.|.-.|.+ ...|.|.||+.
T Consensus 10 ~flRi~l~~~~~~~~~~--~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~-- 84 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQS--CQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGK-- 84 (138)
T ss_dssp CCEEEEEEEEECCCCCC--SCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECS--
T ss_pred cceEEEeeccccCCCCC--cccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcC--
Confidence 67888887766432110 012369999999886542 577 777789999999999998877 67899999974
Q ss_pred CCCCCCCCCCCCCccEEEEEeccccc-----CCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 437 LHGGDKAGGARDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 437 ~~~~~~~~~~~d~~lG~v~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
..++++.+.|.+.+|. .+....-|++| +..|+|++.+++.
T Consensus 85 ----------a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdL--------eP~Gkl~v~i~~~ 129 (138)
T 2enj_A 85 ----------NVDLISETTVELYSLAERCRKNNGKTEIWLEL--------KPQGRMLMNARYF 129 (138)
T ss_dssp ----------SCSCCEEEEEESHHHHHHHHHTTTCEEEEEEC--------BSSCEEEEEEEEC
T ss_pred ----------CCCeeeEEEEEHHHHHhhhccCCCceEEEEec--------ccCcEEEEEEEEE
Confidence 2379999999999996 45678999999 3479999999883
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.4e-08 Score=84.40 Aligned_cols=114 Identities=16% Similarity=0.258 Sum_probs=85.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee----eee-eeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCC
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYK----GTT-RHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVK 112 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~----~kT-~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~ 112 (763)
..|+|.+.++.-=.-+......||||.|.+.... .+| ...++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 4788888777642222233468999999998632 355 677889999999999999886 6889999997654
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
+|++.|+|.+++|..+.........-|+.|++. |.|++.+.+.
T Consensus 82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~------Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ------AKVLMSVQYF 124 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS------CEEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhccCCCceEEEEecccC------cEEEEEEEEe
Confidence 999999999999995411112346789999973 8899887653
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-08 Score=85.10 Aligned_cols=114 Identities=17% Similarity=0.379 Sum_probs=86.7
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----eeee-eeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 38 QYLYVRVVKAKDLPPKD-VTGSCDPYVEVKMGNY----KGTT-RHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~-~~~~~dPyv~v~~~~~----~~kT-~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
..|+|.+.+..--+.+. .....||||.|.+... ..+| ...++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV- 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence 47888888776543322 1346899999999863 2566 666779999999999999876 6889999996554
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
+|++.|+|.+.+|..+.........-|+.|++. |.|++.+.+.
T Consensus 87 --~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~------Gkl~v~i~~~ 129 (138)
T 2enj_A 87 --DLISETTVELYSLAERCRKNNGKTEIWLELKPQ------GRMLMNARYF 129 (138)
T ss_dssp --SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS------CEEEEEEEEC
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEecccC------cEEEEEEEEE
Confidence 899999999999995411011346789999973 8899998775
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=89.51 E-value=0.92 Score=40.89 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=83.6
Q ss_pred cccCceeEEEEEEEEeecCCCC-CCCCCCCcE--EEEEECC-eeeeeeeeCCCCCCeeccEEEEEecC-------CCCce
Q 004297 32 DLVEQMQYLYVRVVKAKDLPPK-DVTGSCDPY--VEVKMGN-YKGTTRHFEKKTNPEWNQVFAFSKDR-------IQSSV 100 (763)
Q Consensus 32 ~~~~~~~~L~v~v~~a~~L~~~-~~~~~~dPy--v~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~-------~~~~~ 100 (763)
++.+.-+.+.|+|.++.--+.. ...+..+|. |.+.+-+ +.+.|.++. +.+|.+|-+-.|.+.. +.+..
T Consensus 12 ~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~ 90 (156)
T 2yrb_A 12 HLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNT 90 (156)
T ss_dssp SCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred hccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCC
Confidence 3445556888999998631110 001334675 4444445 455666665 8899999999998742 12467
Q ss_pred EEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEcc
Q 004297 101 LEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMGT 163 (763)
Q Consensus 101 l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~~ 163 (763)
+.++++......-..+|.+.|+|.++..+.. ....-.+|....|. ..-|.|...+.+..
T Consensus 91 l~lELhqa~g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 91 ITLEVHQAYSTEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEEECSSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 9999988755467899999999999986532 12344577776663 35688887776653
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=3.5 Score=48.69 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=69.3
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEe---cCCCCceE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK---DRIQSSVL 101 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v---~~~~~~~l 101 (763)
.++.+ .+.|+|.++.++... ...+-||.+.+ |++ ..+|..+....+|.|||.+.|++ +-+.+..|
T Consensus 213 ~~~~~---~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L 286 (940)
T 2wxf_A 213 WSLEQ---PFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARL 286 (940)
T ss_dssp TTCCS---EEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEE
T ss_pred hhcCC---ceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEE
Confidence 45543 799999999998754 34577877665 553 34566565577899999999987 33457899
Q ss_pred EEEEEeCCCC-------------CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 102 EVTVKDKDFV-------------KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 102 ~i~V~d~~~~-------------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
.|.||+.... .+..+|.++++|-+.. |.-.+|...+.+|-.
T Consensus 287 ~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~--------------------~~l~~G~~~l~lw~~ 340 (940)
T 2wxf_A 287 CFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK--------------------DQLKTGERCLYMWPS 340 (940)
T ss_dssp EEEEEEEC----------------CEEEEEEEEESBCTT--------------------SBBCCEEEEEECEEC
T ss_pred EEEEEEecCCccCccccccccccccceEEEEeeeEECCc--------------------CccccCCEEEEEeeC
Confidence 9999995321 1335666666555433 322358888888863
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=87.76 E-value=2.1 Score=38.56 Aligned_cols=126 Identities=13% Similarity=0.208 Sum_probs=80.5
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCc--EEEEEECCEEEeeeeecCCCCCccccEEEEEeeCC--------CcEEE
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDA--YCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDP--------CTVIT 428 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dp--yv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~--------~~~l~ 428 (763)
+.-+.++|+|.++. +.+. .....+..+| ||.+.+-+....+..+....+|.+|.+..|.|.-. ...+.
T Consensus 15 ~gEnlfEihi~~~~-~~~~-~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSE-VLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHH-HHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred CCCcEEEEEEeEEE-EcHH-HHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 44579999999987 4321 0000123455 45555545444444455589999999888887521 23688
Q ss_pred EEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc-CCCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 429 IGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 429 i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
|++..... +.-+.||+++|+|.++. ....+.+..+|.+... +....|.|+..+++..+
T Consensus 93 lELhqa~g---------~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g-~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 93 LEVHQAYS---------TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG-DIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEECS---------SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS-CCTTSEEEEEEEEEEEC
T ss_pred EEEEEeeC---------CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC-CcceEEEEEEEEEEecc
Confidence 88887532 14569999999999975 3344566678866432 21346999999988654
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=83.56 E-value=7.4 Score=46.34 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=70.2
Q ss_pred ecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeeCCCCCCeeccEEEEEe---cCCCCceE
Q 004297 31 YDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM--GNY----KGTTRHFEKKTNPEWNQVFAFSK---DRIQSSVL 101 (763)
Q Consensus 31 ~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v---~~~~~~~l 101 (763)
.++.+ .+.|+|.++.++.... ....+-||.+.+ |++ ..+|+.+. ..+|.|||.+.|++ +-+....|
T Consensus 351 w~~~~---~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL 425 (1091)
T 3hhm_A 351 WVINS---ALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARL 425 (1091)
T ss_dssp GGCCS---EEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEE
T ss_pred hhCCC---CEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEE
Confidence 45543 6899999999886433 334677888877 442 34455444 46788999999987 33457899
Q ss_pred EEEEEeCCCC-----CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEE
Q 004297 102 EVTVKDKDFV-----KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWM 161 (763)
Q Consensus 102 ~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 161 (763)
.|.||+.... ....+|-+++.|-+.. |.-.+|...+.+|-
T Consensus 426 ~~tl~~~~~~~~~~~~~~~lg~~n~~lfd~~--------------------~~L~~G~~~L~lW~ 470 (1091)
T 3hhm_A 426 CLSICSVKGRKGAKEEHCPLAWGNINLFDYT--------------------DTLVSGKMALNLWP 470 (1091)
T ss_dssp EEEECCCCCCC-------CCEEEEEESBCTT--------------------CBBCCEEEEEECEE
T ss_pred EEEEEEecCccCcccccceeEEeeeeeEccC--------------------CeEEcCCeEEEeec
Confidence 9999986642 2246777777666543 22224888888885
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=83.10 E-value=4.6 Score=47.67 Aligned_cols=94 Identities=12% Similarity=0.231 Sum_probs=62.9
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEEE
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIGV 431 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~V 431 (763)
..++|.|..+.++... ..++-||.+.+ |++. ..|..+....+|.|||-++|++. + | ...|.|.|
T Consensus 217 ~~f~i~i~~~~~~~~~------~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti 290 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD------ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL 290 (940)
T ss_dssp SEEEEEEEEEECCCC---------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CceEEEEEEecccCCC------CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence 6899999999999642 34678888755 7764 45555555778999999998877 3 3 77999999
Q ss_pred EeCCCCCCC---CC-CCCCCCCccEEEEEecccc
Q 004297 432 FDNCHLHGG---DK-AGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 432 ~d~~~~~~~---~~-~~~~~d~~lG~v~i~l~~l 461 (763)
|+......| .+ .....+..||.+.++|-+-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBCT
T ss_pred EEecCCccCccccccccccccceEEEEeeeEECC
Confidence 996431001 00 0111356999999999874
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.07 E-value=15 Score=35.03 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=47.6
Q ss_pred eeeeeeeCCCCCCeeccEEEEEec--CCCCceEEEEEEeCCCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCC
Q 004297 71 KGTTRHFEKKTNPEWNQVFAFSKD--RIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148 (763)
Q Consensus 71 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 148 (763)
..+|.+.+.+.+|.|+|++-+.+. .....-|.|++++...- +. .+ ..+.+..-.|++|....|
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~-~k-------------~d-k~E~pfg~a~lPL~~~dG 142 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQ-DS-------------KD-KSEKIFALAFVKLMRYDG 142 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCC-SS-------------CC-CCCCEEEEEEEESBCTTS
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEeccc-cc-------------cc-ccCCeeEEEEEEcccCCC
Confidence 457788888999999999988873 34567899999887653 10 00 111233445777776554
Q ss_pred Cc-cceEEEEEEE
Q 004297 149 DK-VRGELMLAVW 160 (763)
Q Consensus 149 ~~-~~G~i~l~~~ 160 (763)
.. ..|.-.|-++
T Consensus 143 ~~L~DG~H~L~vy 155 (220)
T 3l4c_A 143 TTLRDGEHDLIVY 155 (220)
T ss_dssp CBCCSEEEEEEEE
T ss_pred cEEccCCEEEEEE
Confidence 42 3466666554
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=81.74 E-value=4.4 Score=48.27 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=62.1
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCEE----EeeeeecCCCCCccccEEEEEee--C-C-CcEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIIDSPTPKWNEQYTWEVF--D-P-CTVITIG 430 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~ 430 (763)
...++|+|..+.++... .....+-||.+.+ |++. .+|+.+. ..+|.|||-++|++. + | ...|.|+
T Consensus 354 ~~~f~v~i~~~~~~n~~----~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~t 428 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVN----IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLS 428 (1091)
T ss_dssp CSEEEEEEEEESCCCCC----CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred CCCEEEEEEEecCCCCC----ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEE
Confidence 36899999999988642 2234678988866 6543 3444333 457889999888876 3 3 7899999
Q ss_pred EEeCCCCCCCCCCCCCCCCccEEEEEecccc
Q 004297 431 VFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461 (763)
Q Consensus 431 V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l 461 (763)
||+..... + +...+..||.+.++|-+-
T Consensus 429 l~~~~~~~-~---~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 429 ICSVKGRK-G---AKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp ECCCCCCC-----------CCEEEEEESBCT
T ss_pred EEEecCcc-C---cccccceeEEeeeeeEcc
Confidence 99975421 0 011456899999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 763 | ||||
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-25 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-14 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-09 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-23 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-10 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 4e-23 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-08 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-21 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-15 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-11 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-21 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-15 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-21 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-14 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-12 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-20 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-10 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 6e-07 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-19 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 9e-14 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 9e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 7e-19 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-19 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-12 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-16 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-09 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 8e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 7e-12 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 8e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-16 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-08 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-06 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-15 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-07 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-04 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-13 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-04 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-13 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 3e-05 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-13 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-11 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 9e-10 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-11 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 3e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 4e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 6e-08 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 4e-05 |
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 99.4 bits (247), Expect = 3e-25
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRI 96
M L V V KAK ++ + YV +K+ N K TT + + P W Q F F +R+
Sbjct: 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 97 QSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR---KGDKVRG 153
+ V V +K + D +G V L I + + +W L+ + ++ G
Sbjct: 57 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMADSEICG 112
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.2 bits (166), Expect = 2e-14
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L V V +A+ +K YV ++ N T R P W +D
Sbjct: 3 LLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA--VRGSQPSWEQD-FMFEINRL 56
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L + V ++ D ++G IPL+ R ++ W L+ ++ + T
Sbjct: 57 DLGLTVEVWNK-GLIWDTMVGTVWIPLR--TIRQSNEEGPGEWLTLDSQAIMADSEICGT 113
Query: 321 KFAS--RIHMRICLE 333
K + RI + E
Sbjct: 114 KDPTFHRILLDAHFE 128
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 21/145 (14%)
Query: 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEV 420
+ +L +G+ A+ + Y K T + P W + + +E+
Sbjct: 1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEI 53
Query: 421 FDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHSYPLLVLYP 478
+T+ V++ D+ +G V I L T+ + L
Sbjct: 54 NRLDLGLTVEVWNKGL---------IWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDS 101
Query: 479 NGVKKMGEIHLAVRFTCSSLLNMMH 503
+ EI T +L H
Sbjct: 102 QAIMADSEICGTKDPTFHRILLDAH 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.0 bits (233), Expect = 2e-23
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 40 LYVRVVKAKDLPP---KDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSK 93
V V++A + D+ + DPYVE+ + + + TRHF NP WN+ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 94 DRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRG 153
D Q +VLE+T+ D ++V D+ +G F ++ + + + +
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVLEM 119
Query: 154 EL 155
L
Sbjct: 120 SL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (153), Expect = 1e-12
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 20/142 (14%)
Query: 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIIDSPTPKWNEQY 416
S + +L A + D T D Y RTR + P WNE +
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 417 TWEVFDPCT-VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475
+ + V+ I + D ++ D +G +S+++ +
Sbjct: 61 EFILDPNQENVLEITLMDANYV---------MDETLGTATFTVSSMKVGEKKEVPFIF-- 109
Query: 476 LYPNGVKKMGEIHLAVRFTCSS 497
N V + + +++ SS
Sbjct: 110 ---NQVTE-MVLEMSLEV-ASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 3e-10
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 10/119 (8%)
Query: 202 LRVNVIEAQDLQPT---DKGRFPEVYVKAQLGNQAL--RTRVSASRTINPMWNEDLMFVA 256
V V+ A + D P+ YV+ + + + INP+WNE F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
E L +T+ D DE LG + + + + + E
Sbjct: 65 DPNQENVLEITLMDA-NYVMDETLGTATFTV----SSMKVGEKKEVPFIFNQVTEMVLE 118
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.3 bits (231), Expect = 4e-23
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSK 93
V+ + L V+V+KA DL D +G DP+ +++GN + T K NPEWN+VF F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 94 DRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KV 151
I + EVTV D+D DF+G+V L I P Y L+++ +
Sbjct: 62 KDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 152 RGELMLAV 159
+G + L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 1e-08
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 201 YLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPF 260
L+V V++A DL D + + +LGN L+T + +NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTV-YKNLNPEWNKVFTFPIKDIH 65
Query: 261 EEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDT 320
+ L +TV D + LGK IPL + + Y L+ K +
Sbjct: 66 -DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN------CYVLKN-------KDLEQ 111
Query: 321 KFASRIHMRI 330
F I++ +
Sbjct: 112 AFKGVIYLEM 121
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.0 bits (220), Expect = 1e-21
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKT---- 81
+ +D + L V ++ AKDLP ++ +PYV++ + KT
Sbjct: 4 SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 61
Query: 82 -NPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDS 134
P+WNQ F + + + +LE+T+ D+ V + +F+G +L +L
Sbjct: 62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LL 115
Query: 135 PLAPQWYRLE 144
P WY+L+
Sbjct: 116 DDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 2e-15
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 22/126 (17%)
Query: 198 KLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASRTINP 246
KLW+ L V ++ A+DL + GR YVK RT+ +T+ P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEP 64
Query: 247 MWNEDLMFVAAEPFEEH---LILTV--EDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNT 301
WN+ ++ E L +T+ + RV + E LG+ +I L+ +
Sbjct: 65 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-----P 119
Query: 302 RWYNLE 307
WY L+
Sbjct: 120 HWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (144), Expect = 2e-11
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPKWNEQY 416
L + IL A+ L + + Y + + RT+T+ + PKWN+ +
Sbjct: 14 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 70
Query: 417 TWEVFDPCT----VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYP 472
+ ++ I ++D + +G++ I L T D H Y
Sbjct: 71 IYSPVHRREFRERMLEITLWDQ------ARVREEESEFLGEILIELETALLDDE-PHWYK 123
Query: 473 L 473
L
Sbjct: 124 L 124
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 88.3 bits (218), Expect = 2e-21
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-TTRHFEKKTNPEWNQVFAFSKDRIQS 98
L V +V AK L D + DPYV++ + T PEWN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELML 157
+ L+ + DKD +DD +G L + + + P Y + K ++ +GE+ +
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFV----EGSIPPTAYNV--VKDEEYKGEIWV 124
Query: 158 AV 159
A+
Sbjct: 125 AL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.5 bits (177), Expect = 1e-15
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L V ++ A+ L+ D + YV+ Q ++ V+ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGE 315
L + D+ +D+ +G+ IPL+ V + YN+ K +GE
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKDEEYKGE 121
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.1 bits (176), Expect = 1e-15
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 15/138 (10%)
Query: 358 KSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQY 416
G LE+ +++A+GL D D Y + ++ TP+WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGLED---ADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 417 TWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476
+ V + T + +FD D +G+ I L + + + +V
Sbjct: 63 IFTVSEGTTELKAKIFDKDVGT--------EDDAVGEATIPLEPVFVEGSIPPTAYNVV- 113
Query: 477 YPNGVKKMGEIHLAVRFT 494
+ GEI +A+ F
Sbjct: 114 --KDEEYKGEIWVALSFK 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 88.2 bits (218), Expect = 2e-21
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-----TTRHFEKKTNPEWNQVFAFS 92
+ L V V AK+L P D G DPYV++K+ T+ + NPEWN+ F F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 93 -KDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147
K+ + L V + D D ++DFMG + F ++E+ K W++L ++
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.8 bits (165), Expect = 3e-14
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 190 RSKVYLSPKLW--YLRVNVIEAQDLQPTDKGRFPEVYVKAQL-----GNQALRTRVSASR 242
R ++Y+ + L V V +A++L P D + YVK +L +T+
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT-IKC 61
Query: 243 TINPMWNEDLMFVAAEPFEEH-LILTVEDRVAPNKDEVLGKCMIPLQYVDK-RLDHKPVN 300
++NP WNE F E ++ L + + D ++++ +G + + K +D
Sbjct: 62 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG---- 117
Query: 301 TRWYNLEKHIVVEGEK 316
W+ L EGE
Sbjct: 118 --WFKLLSQ--EEGEY 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.4 bits (151), Expect = 3e-12
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQY 416
VL + + +A+ L+PM D G +D Y K + +T+TI S P+WNE +
Sbjct: 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71
Query: 417 TWEVFDP--CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+++ + +++ ++D +R+ +G + +S L+ V + LL
Sbjct: 72 RFQLKESDKDRRLSVEIWDWDLT--------SRNDFMGSLSFGISELQKAGV-DGWFKLL 122
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.5 bits (213), Expect = 1e-20
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 28/144 (19%)
Query: 22 ITGD-KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM------------- 67
ITG+ +L YD + L + +++A++L P+D G DP+V+V +
Sbjct: 5 ITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 68 -GNYKGTTRHFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFD 122
YK T++ +K NPEWNQ + S +++ LEVTV D D +DF+G VL D
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120
Query: 123 LNEIPKRVPPDSPLAPQWYRLEDR 146
L+ P+WY L+++
Sbjct: 121 LSSTSHLDN-----TPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.8 bits (136), Expect = 3e-10
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 189 IRSKVYLSPKLWY----LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSAS--- 241
I ++ L + Y L +++++A++L P D + + +VK L + V +
Sbjct: 5 ITGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 242 ----------RTINPMWNEDLMFV---AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQ 288
+++NP WN+ +++ + ++ L +TV D + ++ LG+ +I L
Sbjct: 63 EYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
Query: 289 YVDKRLDHKPVNTRWYNLEKH 309
+ RWY L++
Sbjct: 123 STSHLDNT----PRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 6e-07
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 360 SIGVLELGILNAQGLMPMKTKDGRGTTDAYCV--------------AKYGQKWVRTRTII 405
+G L + IL A+ L+P D G +D + + RT+ +
Sbjct: 16 DLGNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 406 DSPTPKWNEQYTWEVFDPCT----VITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL 461
S P+WN+ ++ + + V+D + +G+V I LS+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS--------SNDFLGEVLIDLSST 124
Query: 462 ETDRVYTHSYPLL 474
YPL
Sbjct: 125 SHLDNTPRWYPLK 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 83.6 bits (206), Expect = 1e-19
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAF--S 92
L V V+KA+ LP DV+G DPYV+V + + K T + N +N++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 93 KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP--------PDSPLAPQWYRL 143
+ ++ +E V D + +++ +GR++ P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 144 ED 145
D
Sbjct: 136 CD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.7 bits (162), Expect = 9e-14
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 190 RSKVYLSPKLWY------LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA-----LRTRV 238
R ++ +S L Y L V V++A+ L +D + YVK L + +T V
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 58
Query: 239 SASRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDH 296
T N ++NE +F E + V D +++EV+G+ ++ H
Sbjct: 59 K-KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGH 117
Query: 297 ---------KPVNTRWYNL 306
+ + +W+ L
Sbjct: 118 WKEICDFPRRQI-AKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 9e-06
Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 21/124 (16%)
Query: 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKW-----VRTRTIIDSPTPKWN 413
S+ L + +L A+ L D G +D Y +T +P +N
Sbjct: 12 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 68
Query: 414 EQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHS 470
E + +++ + V D+ R+ IG++ + + H
Sbjct: 69 ELFVFDIPCESLEEISVEFLVLDSERGS--------RNEVIGRLVLGAT--AEGSGGGHW 118
Query: 471 YPLL 474
+
Sbjct: 119 KEIC 122
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (200), Expect = 7e-19
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSS 99
L + V+ AK K PYVEV + T +P+W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 100 VLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE---DRKGDKVRGELM 156
V D +G D+ E K + L L+ D++ + G+L
Sbjct: 68 HFRVWSHQT-LKSDVLLGTAALDIYETLK--SNNMKLEEVVVTLQLGGDKEPTETIGDLS 124
Query: 157 LAV 159
+ +
Sbjct: 125 ICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 4e-12
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTINPMWNEDLMFVAAEPFE 261
L++ VI A+ + P YV+ + Q+ +T + T +P W + L + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIVTPVSK 66
Query: 262 EHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKHIVVEGEKKKDTK 321
H + + D +LG + + K + K + + + G+K+
Sbjct: 67 LHFRVWSHQTL--KSDVLLGTAALDIYETLKSNNMK-----LEEVVVTLQLGGDKEPTET 119
Query: 322 FASRIHMRICLEG 334
+ ICL+G
Sbjct: 120 ---IGDLSICLDG 129
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.7 bits (201), Expect = 7e-19
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM---GNYKGTTRHFEKKTN 82
+ + YD Q L V +++A +LP D+ G+ DPYV+V + K T+ K N
Sbjct: 24 QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 83 PEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQ 139
P +N+ F F + L + V D D F K D +G +N + + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-----DFGHVTEE 136
Query: 140 WYRLE 144
W L+
Sbjct: 137 WRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.1 bits (150), Expect = 4e-12
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSA 240
E L ++ + + L V +I+A +L D G + YVK L + T+V
Sbjct: 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-H 76
Query: 241 SRTINPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKP 298
+T+NP++NE F +E + L++ V D +K +++G+ +P+ +D
Sbjct: 77 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGH 132
Query: 299 VNTRWYNLE 307
V W +L+
Sbjct: 133 VTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.8 bits (139), Expect = 2e-10
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYC---VAKYGQKWVRTRTIIDSPTPKWNEQYTW 418
L +GI+ A L + D GT+D Y + +K T+ + P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 419 EVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+V + D ++ IG+ ++ ++T++ V L
Sbjct: 91 KVPYSELGGKT-----LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.4 bits (200), Expect = 1e-18
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 21/140 (15%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG-----TTRHFEKKTNPEWNQVFA 90
L V +++AK+L DV G DPYV++ + T + NP +N+ F+
Sbjct: 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82
Query: 91 F--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV--------PPDSPLAPQ 139
F ++IQ + VTV D D K+D +G+V N + P P+A Q
Sbjct: 83 FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-Q 141
Query: 140 WYRLEDRKGDKVRGELMLAV 159
W+ L+ + + MLAV
Sbjct: 142 WHTLQVEE----EVDAMLAV 157
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.1 bits (150), Expect = 7e-12
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 18/149 (12%)
Query: 183 IEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGN-----QALRTR 237
+E L +I + P L V ++EA++L+ D G + YVK L + +T
Sbjct: 8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 67
Query: 238 VSASRTINPMWNEDLMFVAAEPFEEH--LILTVEDRVAPNKDEVLGKCMIPLQYVDKRLD 295
+ T+NP +NE F + +++TV D K++ +GK + L
Sbjct: 68 IKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 126
Query: 296 H---------KPVNTRWYNLEKHIVVEGE 315
H +P+ +W+ L+ V+
Sbjct: 127 HWSDMLANPRRPI-AQWHTLQVEEEVDAM 154
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 8e-04
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 15/121 (12%)
Query: 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIIDSPTPKWN 413
+ G L + IL A+ L M D G +D Y Q K +T ++ P +N
Sbjct: 22 PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 414 EQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
E +++EV + D ++ IGKV + + T H +
Sbjct: 79 ESFSFEVPFEQI-----QKVQVVVTVLDYDKIGKNDAIGKVFVGYN--STGAELRHWSDM 131
Query: 474 L 474
L
Sbjct: 132 L 132
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.9 bits (178), Expect = 7e-16
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 36 QMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFA 90
L V ++KA +L D+TG DPYV+ + + K T + NP +N+
Sbjct: 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77
Query: 91 F--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRV---------PPDSPLAP 138
F + + +++ L + V D D ++ +G P P+
Sbjct: 78 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE- 136
Query: 139 QWYRLEDRK 147
W++L + K
Sbjct: 137 HWHQLVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 7e-09
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 197 PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTI----NPMWNEDL 252
P L V +I+A +L+ D F + YVKA L ++ R + + NP +NE L
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 76
Query: 253 MF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKR-LDH---------KPVN 300
+F L + V D +EV+G C + + D +H KPV
Sbjct: 77 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV- 135
Query: 301 TRWYNL 306
W+ L
Sbjct: 136 EHWHQL 141
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.6 bits (177), Expect = 8e-16
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAF--S 92
L V +++ L D G DP+V++ + K T+ +K NPE+N+ F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 93 KDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKV 151
+ L+++V D D +D++G ++ +R+ WY K K+
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL-------KHWYECLKNKDKKI 129
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.4 bits (148), Expect = 7e-12
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 190 RSKVYLS----PKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQALRTRVSASRTI- 244
R K+ +S + L V +I L D + + +VK L + ++
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 245 ---NPMWNEDLMF--VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPV 299
NP +NE+ + ++ ++ L ++V D ++ +G C + + +RL H
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH--- 117
Query: 300 NTRWYNLEKH 309
WY K+
Sbjct: 118 ---WYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 8e-04
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 357 WKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIIDSPTPK 411
+ + G L +GI+ L M D G +D + + +T+ + P+
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 412 WNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSY 471
+NE++ +++ + + D G + IG ++ H Y
Sbjct: 67 FNEEFFYDIKHS-----DLAKKSLDISVWDYDIGKSNDYIGGCQL--GISAKGERLKHWY 119
Query: 472 PLL 474
L
Sbjct: 120 ECL 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (177), Expect = 8e-16
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTG-SCDPYVEVKM---GNYKGTTR 75
G + + Y+ + + V + +A+ LP D + DPY+++ + +K TR
Sbjct: 9 GTL---FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR 63
Query: 76 HFEKKTNPEWNQVFAF---SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVP 131
K +P +++ F F +IQ L T+ D F +DD +G VL L+ I
Sbjct: 64 VLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI----- 118
Query: 132 PDSPLAPQWYRLEDRKG 148
+ E G
Sbjct: 119 -ELSEGKMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 2e-08
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 181 TGIEGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDK-GRFPEVYVKAQL---GNQALRT 236
+G GL + + + + VN+ EA+ L D+ + Y+K + ++T
Sbjct: 3 SGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKT 62
Query: 237 RVSASRTINPMWNEDLMFV---AAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKR 293
RV +T++P ++E F + E L T+ ++D+++G+ +IPL ++
Sbjct: 63 RV-LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE-- 119
Query: 294 LDHKPVNTRWYNLE 307
L + N E
Sbjct: 120 LSEGKM---LMNRE 130
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (105), Expect = 4e-06
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIIDSPTPKWNEQYTW 418
+ I A+GL M + T+D Y + V+TR + + P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMD--EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 419 EVFDP----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE 462
+ + RD IG+V I LS +E
Sbjct: 80 YGIPYTQIQELALHFTILSFDRFS--------RDDIIGEVLIPLSGIE 119
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.6 bits (169), Expect = 7e-15
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 20 GKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVE---VKMGNYKGTTRH 76
G+I Y L VR+++A DLP KD G DPYV+ + K T+
Sbjct: 5 GRI---SFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV 59
Query: 77 FEKKTNPEWNQVFAF--SKDRIQSSVLEVTVKDKD-FVKDDFMGRVLFDLNEIPKRVPPD 133
K NP +N+ F F + L +V D D F + D +G+V+ D PPD
Sbjct: 60 HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 119
Query: 134 SPLAPQWYRLED 145
PL W + +
Sbjct: 120 RPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.8 bits (115), Expect = 1e-07
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVKAQL---GNQALRTRVSASRTINPMWNEDLMFV--A 256
L V +++A DL D F + YVK L + +T+V +T+NP++NE F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPL 78
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEK 308
AE + L +V D ++ +++G+ ++ + + + P W ++ +
Sbjct: 79 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDN--LLELAEQPPDRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.0 bits (87), Expect = 7e-04
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTW 418
L + IL A L + + +K +T+ + P +NE + +
Sbjct: 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74
Query: 419 EVFDPCTVITIGVFDNCHLHG--GDKAGGARDSRIGKVRIRLSTLETDRVY--THSYPLL 474
V LH D +R IG+V + ++ +L
Sbjct: 75 SVPLA-------ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.3 bits (161), Expect = 1e-13
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 17/123 (13%)
Query: 38 QYLYVRVVKAKDLPP--KDVTGSCDPYVEVKMGNYKGTTRHFEKKT------NPEWNQVF 89
+ L VR++ + LP K+ DP V V++ T + NP W+ F
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 90 AFSKDRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKG 148
F +++ V+D D K+DF+G+ N + + + L + G
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNG 115
Query: 149 DKV 151
D+
Sbjct: 116 DQH 118
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.3 bits (148), Expect = 5e-12
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 202 LRVNVIEAQDLQPT--DKGRFPEVYVKAQ-----LGNQALRTRVSASRTINPMWNEDLMF 254
LRV +I Q L +K + V + + +T V + NP W+ + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 255 VAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTR 302
P + VED + +K++ +G+ IP + + H + ++
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSK 113
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 364 LELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSP-TPKWNEQYT 417
L + I++ Q L P K+ D + + +T I ++ P+W+ ++
Sbjct: 6 LRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 418 WEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474
+EV P D +++ IG+ I + + LL
Sbjct: 65 FEVTVPD-------LALVRFMVEDYDSSSKNDFIGQSTIP---WNSLKQGYRHVHLL 111
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.3 bits (161), Expect = 1e-13
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 17/122 (13%)
Query: 45 VKAKDL-PPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRIQS 98
+ +L + + P+ VKM T + PEW F +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR- 67
Query: 99 SVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLA 158
V+++ + D M V ++ + +R ++ A W L+ + ++++
Sbjct: 68 -VIQIVLMRAAE---DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMC 117
Query: 159 VW 160
V
Sbjct: 118 VQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.7 bits (97), Expect = 3e-05
Identities = 10/120 (8%), Positives = 30/120 (25%), Gaps = 21/120 (17%)
Query: 379 TKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFD 433
+ + +C K + + P+W + + VI I +
Sbjct: 17 LQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMR 75
Query: 434 NCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493
+ +G + + + L + ++ + V++
Sbjct: 76 AAEDPMSEV-------TVGVSVLAERCKKNNGKAEFWLDL--------QPQAKVLMCVQY 120
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 64.5 bits (156), Expect = 5e-13
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 22/135 (16%)
Query: 39 YLYVRVVKAKDLPPKD-----------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWN 86
L +++ +A L P T DPY+ + + + + G T +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 87 QVFAFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146
F + L V DDF+ E+ + S W LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN---GSRHFEDWIDLEP- 121
Query: 147 KGDKVRGELMLAVWM 161
G++ + + +
Sbjct: 122 -----EGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 58.7 bits (141), Expect = 5e-11
Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 29/145 (20%)
Query: 201 YLRVNVIEAQDLQPTDKGR-----------FPEVYVKAQLGNQALRTRVSASRTINPMWN 249
L++ + EA L+PT + Y+ + + + + +T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 250 EDLMFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHKPVNTRWYNLEKH 309
++ + + L + + + D+ + C I + + + W +LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPI--GYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 310 IVVEGEKKKDTKFASRIHMRICLEG 334
++++ I L G
Sbjct: 123 --------------GKVYVIIDLSG 133
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 55.3 bits (132), Expect = 9e-10
Identities = 24/147 (16%), Positives = 51/147 (34%), Gaps = 28/147 (19%)
Query: 362 GVLELGILNAQGLMPMKT--------KDGRGTTDAYCVAKYG-QKWVRTRTIIDSPTPKW 412
G+L++ I A L P + D Y + +T T + +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 413 NEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL--ETDRVYTHS 470
++++ +V + I + VF + + D + I+ L R +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIGYDD--------FVANCTIQFEELLQNGSRHFEDW 116
Query: 471 YPLLVLYPNGVKKMGEIHLAVRFTCSS 497
L + G++++ + + SS
Sbjct: 117 IDL--------EPEGKVYVIIDLSGSS 135
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 1e-11
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKG----TTRHFEKKT 81
YD Q L+V ++A + G CD YV+ + N G T +++
Sbjct: 16 HYCLDYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQL 70
Query: 82 NPEWNQVFAFSKDRIQSSVLEVTVKDKDFVK---DDFMGRVLFDLNEIPKRVPPDSPLAP 138
+ W + + +T+ + + G + L+ +
Sbjct: 71 HTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA----- 125
Query: 139 QWYRLEDRK 147
QW L+
Sbjct: 126 QWGELKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 17/116 (14%), Positives = 26/116 (22%), Gaps = 15/116 (12%)
Query: 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY----GQKWVRTRTIIDSPTPKWNEQYT 417
L + L A + G D Y G +T W E
Sbjct: 26 AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79
Query: 418 WEVFDPCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473
+ + L +R S G++R+ L L
Sbjct: 80 LPLAEEELPTAT-----LTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 4e-05
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 14/132 (10%)
Query: 184 EGLANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRFPEVYVKAQLGNQA----LRTRVS 239
+ + + L V +EA + + YV+ + N+ +T +
Sbjct: 10 NQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTAL- 65
Query: 240 ASRTINPMWNEDL--MFVAAEPFEEHLILTVEDRVAPNKDEVLGKCMIPLQYVDKRLDHK 297
R ++ W E L E L LT+ ++ V G+ + L
Sbjct: 66 KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL----DGTSVP 121
Query: 298 PVNTRWYNLEKH 309
+W L+
Sbjct: 122 LGAAQWGELKTS 133
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 6e-08
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 25/121 (20%)
Query: 40 LYVRVVKAKDLPPKDVTGSCDPYVEVKM------GNYKGTTRHFEKKT--NPEWNQ--VF 89
L + V+ + L + V YVEV++ + T+ NP W +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 90 AFSKDRIQSSVLEVTVKDKDFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD 149
+ + L V V ++ + F+G + +N + L
Sbjct: 59 FEKILMPELASLRVAVMEEG---NKFLGHRIIPINAL--------NSGYHHLCLHSESNM 107
Query: 150 K 150
Sbjct: 108 P 108
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 4e-05
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 202 LRVNVIEAQDLQPTDKGRFPEVYVK---AQLGNQALRTRVSASRTINPMWNEDLMF--VA 256
L + VI Q L + EV + + ++ +INP+W E+
Sbjct: 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62
Query: 257 AEPFEEHLILTVEDRVAPNKDEVLGKCMIPL 287
P L + V + ++ LG +IP+
Sbjct: 63 LMPELASLRVAVME----EGNKFLGHRIIPI 89
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 763 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.82 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.8 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.79 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.78 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.78 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.74 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.74 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.74 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.74 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.73 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.72 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.71 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.7 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.69 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.69 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.67 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.66 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.64 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.64 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.62 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.61 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.59 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.57 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.54 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.53 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.37 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.29 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.99 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 92.67 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-22 Score=181.66 Aligned_cols=123 Identities=25% Similarity=0.458 Sum_probs=109.0
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLH 438 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~ 438 (763)
.++|.|+|+|++|+||+++ +..|++||||++.++++.++|+++.++.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCC---CCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 4579999999999999987 5668999999999999999999999999999999999999998899999999998876
Q ss_pred CCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEee
Q 004297 439 GGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTC 495 (763)
Q Consensus 439 ~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 495 (763)
+|++||++.|+|+++..+. .+||.|......+. ..|+|+|++++.+
T Consensus 80 --------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 --------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp --------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred --------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEEE
Confidence 7899999999999998876 58999976555443 4599999998854
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.7e-21 Score=170.98 Aligned_cols=121 Identities=36% Similarity=0.570 Sum_probs=106.8
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 34 VEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 34 ~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
.+++|.|+|+|++|++|+..+..|.+||||++++++++++|+++++|.||.|||+|.|.+.+. ...|.|+|||++.. +
T Consensus 2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~ 80 (126)
T d2ep6a1 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP 80 (126)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred CCccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence 367899999999999999999999999999999999999999999999999999999999865 47899999999988 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCC-ccceEEEEEEEEc
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGD-KVRGELMLAVWMG 162 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~~ 162 (763)
|++||++.++|.++..+ ..+|+.|....++ ...|+|++++.+.
T Consensus 81 d~~lG~~~i~l~~l~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 81 PDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred cceEEEEEEEHHHCCCC-------CceEEEccccCCCCceeEEEEEEEEEE
Confidence 89999999999998754 3579988776533 4579999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=2.2e-20 Score=169.56 Aligned_cols=123 Identities=24% Similarity=0.351 Sum_probs=106.7
Q ss_pred CCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeec-CCCCCccccEEEEEeeCCCcEEEEEEEeCCCC
Q 004297 359 SSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTII-DSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (763)
Q Consensus 359 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~ 437 (763)
.+.|.|+|+|++|+||+++ +..|++||||++.++++..+|++++ ++.||.|||.|.|.+.++...|+|+|||++.+
T Consensus 7 ~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~ 83 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEEeeCCCCC---CCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence 4569999999999999987 6678999999999999999999987 58999999999999998888899999999987
Q ss_pred CCCCCCCCCCCCccEEEEEecccccC-CCeEeeeEeeeeeCCCCcccceEEEEEEEEeec
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLET-DRVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCS 496 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 496 (763)
+ +|++||++.|+|.++.. +.....||+|.. ..+..|+|++++.|.+.
T Consensus 84 ~--------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 84 T--------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T--------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred C--------CCCEEEEEEEEhHHhcccCCcCcEEEEecC----CCccCEEEEEEEEEEeC
Confidence 6 88999999999999744 455578999854 22456999999999764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.2e-20 Score=163.51 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=101.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC---EEEeeeeecCCCCCccccEEEEEeeCC-CcEEEEEEEeCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIIDSPTPKWNEQYTWEVFDP-CTVITIGVFDNCHL 437 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~V~d~~~~ 437 (763)
+.|+|+|++|+||+.....|..|++||||++.+++ +..||+++.++.||.|||.|.|.+.++ ...|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 68999999999998754335568899999999976 568999999999999999999999876 56899999999864
Q ss_pred CCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEEe
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRFT 494 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 494 (763)
+|++||++.|+|++|..+.....||+|.. ...|+|++++++.
T Consensus 83 ---------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~------~~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 ---------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEVA 124 (126)
T ss_dssp ---------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEECC
T ss_pred ---------CCCeEEEEEEEHHHccCCCeEEEEEEccC------CCeEEEEEEEEEE
Confidence 57899999999999999999999999943 2358888888764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=2e-19 Score=163.22 Aligned_cols=124 Identities=26% Similarity=0.400 Sum_probs=106.3
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeC-CCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-C
Q 004297 35 EQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFE-KKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-K 112 (763)
Q Consensus 35 ~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~ 112 (763)
.+.|.|+|+|++|++|+..+..|.+||||++++++++.+|++++ ++.||.|||+|.|.+.+. ...|.|+|||++.. +
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~ 85 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCCC
Confidence 56799999999999999999999999999999999999999886 589999999999999864 46699999999998 8
Q ss_pred CeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcccC
Q 004297 113 DDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGTQA 165 (763)
Q Consensus 113 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~ 165 (763)
|++||++.|+|.++.... ....+|+.|... .+..|+|++++.|.+.+
T Consensus 86 d~~iG~~~i~L~~l~~~~----~~~~~~~~l~~~--~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 86 DDAVGEATIPLEPVFVEG----SIPPTAYNVVKD--EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TCCSEEEEEESHHHHHHS----EEEEEEEEEEET--TEEEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEhHHhcccC----CcCcEEEEecCC--CccCEEEEEEEEEEeCC
Confidence 999999999999986432 234679998753 35679999999987643
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.78 E-value=7.6e-19 Score=158.81 Aligned_cols=120 Identities=20% Similarity=0.323 Sum_probs=101.5
Q ss_pred cceEEEEEEEccCCCCCcc--------CCCCCCCCcEEEEEECCEE-EeeeeecCCCCCccccEEEEEeeCCCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKT--------KDGRGTTDAYCVAKYGQKW-VRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~--------~~~~g~~Dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V 431 (763)
.|.|+|+|++|+||++++. ....+.+||||++.++++. .+|+++.++.||.|||.|.|++.+ ...|+|+|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V 83 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence 3899999999999998531 1246779999999999976 589999999999999999999976 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCC--CeEeeeEeeeeeCCCCcccceEEEEEEEEeecc
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETD--RVYTHSYPLLVLYPNGVKKMGEIHLAVRFTCSS 497 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 497 (763)
||++.++ +|++||++.|+|+++..+ .....|++|. .+|+|++++++++++
T Consensus 84 ~d~~~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 84 FHDAPIG--------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp EECCSSS--------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEEE
T ss_pred EEecCCC--------CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeCC
Confidence 9999876 899999999999998544 4567899994 359999999998754
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=6.2e-19 Score=158.92 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=90.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCCCCCccccEEEEEeeCC--CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFDP--CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~V~d~ 434 (763)
+.|.|.|++|+||+++ +..|.+||||++.+ +...++|+++.+|.||+|||.|.|.+.++ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~---d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCC---CCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 6899999999999987 56689999999998 45578999999999999999999998864 45899999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeee
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLV 475 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~ 475 (763)
|.++ +|++||.+.|+|.++..+. ..+||+|.+
T Consensus 92 d~~~--------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 92 DLTS--------RNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp CSSS--------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCC--------CCcEeEEEEEeHHHcCCCC-CCeEEECCC
Confidence 9876 8899999999999997654 589999965
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-18 Score=154.92 Aligned_cols=116 Identities=27% Similarity=0.450 Sum_probs=99.3
Q ss_pred eEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC
Q 004297 38 QYLYVRVVKAKDLPPK---DVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV 111 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~ 111 (763)
+.|+|+|++|+||+.. |..|.+||||++.+++ ++++|+++.++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 5899999999999864 3357899999999976 678999999999999999999999877778899999999988
Q ss_pred CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 112 KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 112 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
+|++||++.++|.++..+. ....||+|.... .|+|.+++.+.
T Consensus 83 ~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~~----~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 MDETLGTATFTVSSMKVGE-----KKEVPFIFNQVT----EMVLEMSLEVA 124 (126)
T ss_dssp CCEEEEEEEEEGGGSCTTC-----EEEEEEEETTTE----EEEEEEEEECC
T ss_pred CCCeEEEEEEEHHHccCCC-----eEEEEEEccCCC----eEEEEEEEEEE
Confidence 9999999999999997653 356899997642 48888877654
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.6e-18 Score=156.99 Aligned_cols=119 Identities=21% Similarity=0.303 Sum_probs=102.0
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCE
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQK 397 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~ 397 (763)
...|+|++++.+. +..+.|.|+|++|+||+++ +..|.+||||++.+ +.+
T Consensus 18 ~~~G~l~~sl~y~-------------------------~~~~~L~V~V~~a~~L~~~---~~~g~~dpyV~v~l~~~~~~ 69 (143)
T d1rsya_ 18 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCS
T ss_pred hcceEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCC---CCCCCCCeEEEEEEcCCCCe
Confidence 3469998888762 2237999999999999986 55689999999988 556
Q ss_pred EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
.++|++++++.||.|||.|.|.+.. ....|.|+|||++..+ ++++||.+.|+|.++..++...+||+|.
T Consensus 70 ~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS--------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC--------CCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 6899999999999999999998864 3568999999999876 7889999999999999888889999995
Q ss_pred e
Q 004297 475 V 475 (763)
Q Consensus 475 ~ 475 (763)
.
T Consensus 142 s 142 (143)
T d1rsya_ 142 S 142 (143)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.9e-18 Score=152.37 Aligned_cols=114 Identities=32% Similarity=0.574 Sum_probs=95.7
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeeCCCCCCeeccEEEEEecCC-CCc
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKM-----GNYKGTTRHFEKKTNPEWNQVFAFSKDRI-QSS 99 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~ 99 (763)
++.+++.+.. +.|.|+|++|+||+.++..|.+||||++++ +..+++|+++.+|.||+|||+|.|.+... ...
T Consensus 5 ~i~l~~~~~~--~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~ 82 (132)
T d1a25a_ 5 RIYIQAHIDR--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDR 82 (132)
T ss_dssp EEEEEEEESS--SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGC
T ss_pred EEEEEEEecC--CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCC
Confidence 4555555543 689999999999999999999999999999 33578999999999999999999998543 245
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
.|.|+|||++.. +|++||++.|+|.++..+ ...+||+|.+.+
T Consensus 83 ~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~------~~~~W~~L~~~~ 125 (132)
T d1a25a_ 83 RLSVEIWDWDLTSRNDFMGSLSFGISELQKA------GVDGWFKLLSQE 125 (132)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEHHHHTTC------CEEEEEECBCHH
T ss_pred EEeEEEEecCCCCCCcEeEEEEEeHHHcCCC------CCCeEEECCCCC
Confidence 799999999998 899999999999998643 156899998743
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.5e-18 Score=151.47 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=96.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCC-CCeee
Q 004297 38 QYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFV-KDDFM 116 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~-~d~~l 116 (763)
++|.|+|++|++++..+..+.+||||+++++++.++|++++++.||.|||.|.|.+.+ .+.|.|+|||++.+ +|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 6899999999999988888899999999999999999999999999999999999975 46899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC-CCccceEEEEEEE
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK-GDKVRGELMLAVW 160 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~i~l~~~ 160 (763)
|++.++|.++.............|+.|.... +....|+|.+.+.
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence 9999999988643221111223344555443 3456799888764
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=9.7e-18 Score=150.71 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=95.3
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
+.|+|+|++|++|+.. +..+++||||++.+|++.++|++++++.||.|||.|.|++.+ ++.|+|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS---
T ss_pred eEEEEEEEEeECCCcC---CCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC---
Confidence 7899999999999876 445789999999999999999999999999999999999865 678999999999887
Q ss_pred CCCCCCCCccEEEEEeccccc---CCCeEeeeEeeeee-CCCCcccceEEEEEEEE
Q 004297 442 KAGGARDSRIGKVRIRLSTLE---TDRVYTHSYPLLVL-YPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~---~~~~~~~~~~L~~~-~~~g~~~~G~i~l~~~~ 493 (763)
+|++||++.|+|.++. .+.....+++|... ..++.+..|+|.+.+..
T Consensus 79 -----~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 -----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp -----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred -----CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 8999999999999973 23322334444322 23444456888876653
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=7.2e-18 Score=154.02 Aligned_cols=114 Identities=29% Similarity=0.468 Sum_probs=96.9
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEec--CCCCc
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~ 99 (763)
..+++.|+. ..+.|.|+|++|+||+..+..+.+||||++++. .++.+|++++++.||.|||+|.|.+. +....
T Consensus 23 l~~sl~y~~--~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~ 100 (143)
T d1rsya_ 23 LQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK 100 (143)
T ss_dssp EEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTC
T ss_pred EEEEEEEeC--CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCc
Confidence 456666665 456999999999999999989999999999993 36789999999999999999999874 33467
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeec
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLED 145 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 145 (763)
.|.|+|||++.. ++++||++.|+|+++..+. ...+||+|+.
T Consensus 101 ~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s 142 (143)
T d1rsya_ 101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred eEEEEEEEcCCCCCCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence 899999999988 8899999999999997653 2578999975
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1.3e-17 Score=149.79 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=92.1
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCC-CCCccccEEEEEeeCC-CcEEEEEEEeC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDS-PTPKWNEQYTWEVFDP-CTVITIGVFDN 434 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t-~~P~wne~~~~~v~~~-~~~l~i~V~d~ 434 (763)
..|+|+|++|+||+..+. +..|++||||++.+ +.+..+|++++++ +||.|||.|+|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 479999999999975432 56788999999988 3467999988765 7999999999988765 56799999999
Q ss_pred CCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 435 CHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 435 ~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
|..+ +|++||++.|+|+++..| .+|++|.+..+... ..|+|.+.+++
T Consensus 83 d~~~--------~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS--------KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-PSATLFVKISI 129 (131)
T ss_dssp CTTT--------CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred cCCC--------CCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-CCCEEEEEEEE
Confidence 9876 789999999999999876 46899965432221 34677776665
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=8.4e-18 Score=150.82 Aligned_cols=118 Identities=30% Similarity=0.456 Sum_probs=94.5
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeeCCCCCCeeccEEEEEec--CCCCce
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN---YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSSV 100 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~ 100 (763)
++.+...+....+.|.|+|++|+||+..+..+.+||||++++.+ ++++|++++++.||.|||+|.|.+. +.....
T Consensus 6 ~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~ 85 (130)
T d1dqva1 6 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK 85 (130)
T ss_dssp EEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred EEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCe
Confidence 34444444566789999999999999999899999999999953 5689999999999999999999974 334677
Q ss_pred EEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecC
Q 004297 101 LEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 101 l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 146 (763)
|.|+|||++.+ +|++||++.|++.......+. ....|++|.+.
T Consensus 86 L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~---~~~~W~~L~~~ 129 (130)
T d1dqva1 86 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP---DRPLWRDILEG 129 (130)
T ss_dssp CEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS---SCCCCEECBCC
T ss_pred EEEEEEEcCCCCCCceEEEEEECchhhhhcCCC---CCcEEEecccC
Confidence 99999999988 899999999986544333222 24569999863
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.73 E-value=1.4e-17 Score=150.46 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=99.1
Q ss_pred ceeEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCee-eeeeeeCCCCCCeeccEEEEEecCCCCceEEE
Q 004297 36 QMQYLYVRVVKAKDLPPKD-----------VTGSCDPYVEVKMGNYK-GTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEV 103 (763)
Q Consensus 36 ~~~~L~v~v~~a~~L~~~~-----------~~~~~dPyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i 103 (763)
..|.|+|+|++|++|++.+ ..+.+||||+++++++. .+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i 81 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEE
Confidence 3589999999999998743 35689999999999865 689999999999999999999975 468999
Q ss_pred EEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEcc
Q 004297 104 TVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMGT 163 (763)
Q Consensus 104 ~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 163 (763)
+|||++.. +|++||.+.|+|.++..+.. .....|++|++ .|+|++.+.+.+
T Consensus 82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~---~~~~~w~~L~p------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 82 AVFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS------SCEEEEEEEEEE
T ss_pred EEEEecCCCCceeEEEEEEEHHHhhhcCC---cceeEEEeCCC------CcEEEEEEEEEe
Confidence 99999998 89999999999999986642 23568999974 388998887754
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.5e-17 Score=147.37 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=85.8
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCEEEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCCCCCC
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGD 441 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~ 441 (763)
+.|.|+|.+|++|.+. +++||||++++++...+|.+++ +.||.|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred eEEEEEEEEEECCCCC------CCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence 6899999999999875 4689999999999999999886 5699999999999999989999999999865
Q ss_pred CCCCCCCCccEEEEEecccccC--CCeEeeeEeeee
Q 004297 442 KAGGARDSRIGKVRIRLSTLET--DRVYTHSYPLLV 475 (763)
Q Consensus 442 ~~~~~~d~~lG~v~i~l~~l~~--~~~~~~~~~L~~ 475 (763)
+|++||++.|+|+++.. +.....||+|..
T Consensus 71 -----~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 71 -----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp -----CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred -----CCcceEEEEEEehhhccCCCCCCCeeEECCc
Confidence 68899999999999853 234578999954
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=1.3e-18 Score=159.18 Aligned_cols=104 Identities=25% Similarity=0.364 Sum_probs=89.5
Q ss_pred ceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC--------------EEEeeeeecCCCCCccccEEEEEeeC----C
Q 004297 362 GVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ--------------KWVRTRTIIDSPTPKWNEQYTWEVFD----P 423 (763)
Q Consensus 362 g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~--------------~~~~T~~~~~t~~P~wne~~~~~v~~----~ 423 (763)
|.|.|.|++|+||+++ +..|.+||||++.+.+ ...||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~---d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEeECCCCc---CCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence 7899999999999987 5668999999998832 12589999999999999999998543 3
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeee
Q 004297 424 CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVL 476 (763)
Q Consensus 424 ~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~ 476 (763)
...|.|.|||++.++ +|++||++.|+|.++..+....+||+|...
T Consensus 95 ~~~L~i~V~d~d~~~--------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS--------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS--------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEEecCCC--------CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 668999999999876 789999999999999888778899999753
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.7e-18 Score=157.01 Aligned_cols=114 Identities=36% Similarity=0.674 Sum_probs=95.7
Q ss_pred ceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeeeeeeCCCCCCeeccEEE
Q 004297 25 DKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN--------------YKGTTRHFEKKTNPEWNQVFA 90 (763)
Q Consensus 25 ~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--------------~~~kT~~~~~t~nP~Wne~f~ 90 (763)
..+++.|+ .+.|.|+|++|+||+.++..|.+||||++++.+ ++++|++++++.||.|||+|.
T Consensus 9 l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~ 84 (142)
T d1rh8a_ 9 IQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVI 84 (142)
T ss_dssp EEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEE
T ss_pred EEEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEE
Confidence 35666664 478999999999999999999999999999943 235799999999999999999
Q ss_pred EEe---cCCCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 91 FSK---DRIQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 91 f~v---~~~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
|.. .++....|.|+|||++.. ++++||++.|+|.++.... ...+||+|.+++
T Consensus 85 f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 85 YKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp ECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC-----CceEEEECcCcC
Confidence 974 233467899999999988 8899999999999997653 257999999875
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=1.5e-17 Score=149.16 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=95.7
Q ss_pred eeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCEE
Q 004297 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKW 398 (763)
Q Consensus 322 ~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~~ 398 (763)
..|+|.+++++. +..+.|.|.|++|+||+++ +..|.+||||++.+ +.+.
T Consensus 3 p~G~l~~sl~y~-------------------------~~~~~L~V~V~~a~~L~~~---~~~g~~dpyv~v~l~~~~~~~ 54 (130)
T d1dqva1 3 PCGRISFALRYL-------------------------YGSDQLVVRILQALDLPAK---DSNGFSDPYVKIYLLPDRKKK 54 (130)
T ss_dssp SSCEEEEEEECC-------------------------SSSCEEEEEEEEEECCCCC---STTSCCCEEEEEECTTSTTSC
T ss_pred CcEEEEEEEEEE-------------------------CCCCEEEEEEEeeeCCccc---cCCCCcceEEEEEEccCCCce
Confidence 368998888762 3348999999999999986 56689999999998 3456
Q ss_pred EeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc-cC-CCeEeeeEee
Q 004297 399 VRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL-ET-DRVYTHSYPL 473 (763)
Q Consensus 399 ~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l-~~-~~~~~~~~~L 473 (763)
++|++++++.||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|++... .. ......||+|
T Consensus 55 ~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~--------~d~~iG~~~i~~~~~l~~~~~~~~~W~~L 126 (130)
T d1dqva1 55 FQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS--------RHDLIGQVVLDNLLELAEQPPDRPLWRDI 126 (130)
T ss_dssp EECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS--------CCCEEEEEECCCTTGGGSSCSSCCCCEEC
T ss_pred EeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCC--------CCceEEEEEECchhhhhcCCCCCcEEEec
Confidence 8999999999999999999998753 467999999999876 889999999986543 22 2233579999
Q ss_pred ee
Q 004297 474 LV 475 (763)
Q Consensus 474 ~~ 475 (763)
..
T Consensus 127 ~~ 128 (130)
T d1dqva1 127 LE 128 (130)
T ss_dssp BC
T ss_pred cc
Confidence 64
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=6.8e-17 Score=143.07 Aligned_cols=103 Identities=30% Similarity=0.446 Sum_probs=87.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCCeee
Q 004297 37 MQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKDDFM 116 (763)
Q Consensus 37 ~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d~~l 116 (763)
|+.|.|+|++|++|.+.+ .+||||++++++++.+|++++ +.||.|||+|.|.+.++ ...|.|+|||.+..+|++|
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence 578999999999999866 579999999999999999886 55999999999999876 5789999999988899999
Q ss_pred EEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 117 GRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 117 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
|++.|+|+++..... ....+||+|..+.
T Consensus 76 G~~~I~L~~l~~~~~---~~~~~W~~L~~~~ 103 (128)
T d2cjta1 76 GTVWIPLRTIRQSNE---EGPGEWLTLDSQA 103 (128)
T ss_dssp EEEEEEGGGSCBCSS---CCCCEEEECBC--
T ss_pred EEEEEEehhhccCCC---CCCCeeEECCccc
Confidence 999999999975432 2356899997653
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.5e-17 Score=146.68 Aligned_cols=112 Identities=29% Similarity=0.557 Sum_probs=88.9
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeeCCCCCCeeccEEEEE-ec--CCCC
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG-----NYKGTTRHFEKKTNPEWNQVFAFS-KD--RIQS 98 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~~ 98 (763)
+.+.+.+....+.|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||+|.|. +. +...
T Consensus 3 l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~ 82 (125)
T d2bwqa1 3 LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRE 82 (125)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGG
T ss_pred EEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCC
Confidence 334444445667999999999999999888999999999993 256899999999999999999996 32 3345
Q ss_pred ceEEEEEEeCCCC---CCeeeEEEEEEccccCCCCCCCCCCcCeEEEee
Q 004297 99 SVLEVTVKDKDFV---KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLE 144 (763)
Q Consensus 99 ~~l~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 144 (763)
..|.|+|||.+.. ++++||++.|+|+++..+. ..+||+|+
T Consensus 83 ~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~ 125 (125)
T d2bwqa1 83 RMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125 (125)
T ss_dssp CEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred CEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence 6899999999975 5679999999999987653 35899985
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.2e-16 Score=143.18 Aligned_cols=117 Identities=24% Similarity=0.411 Sum_probs=93.8
Q ss_pred eEEEEEEEEeecCCC--CCCCCCCCcEEEEEEC-----CeeeeeeeeCCC-CCCeeccEEEEEecCCCCceEEEEEEeCC
Q 004297 38 QYLYVRVVKAKDLPP--KDVTGSCDPYVEVKMG-----NYKGTTRHFEKK-TNPEWNQVFAFSKDRIQSSVLEVTVKDKD 109 (763)
Q Consensus 38 ~~L~v~v~~a~~L~~--~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~d~~ 109 (763)
..|.|+|++|++|+. .+..+.+||||++++. .++++|++++++ .||.|||+|.|.+.......|.|+|||++
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 479999999999975 4556789999999994 367889988654 79999999999987666788999999999
Q ss_pred CC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEEc
Q 004297 110 FV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWMG 162 (763)
Q Consensus 110 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~ 162 (763)
.. +|++||++.++|..+..+ .+|++|.+..|+. ..+.|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 98 899999999999998643 3699999888765 346777777653
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.2e-16 Score=144.78 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=98.3
Q ss_pred ceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECC----
Q 004297 321 KFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQ---- 396 (763)
Q Consensus 321 ~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~---- 396 (763)
...++|++.+.+. ...+.|.|+|++|+||.. .|.+||||++.+.+
T Consensus 10 ~~~~~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~ 58 (138)
T d1wfma_ 10 NQAPKLHYCLDYD-------------------------CQKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEE
T ss_pred CcCCEEEEEEEEC-------------------------CCCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCc
Confidence 3468888888763 233799999999999943 36799999998832
Q ss_pred EEEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 397 KWVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 397 ~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
...+|++++++.||.|||.|.|.+.. ....|.|.|||++.++ ++++||++.|+|.++..+....+||+|
T Consensus 59 ~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~W~~L 130 (138)
T d1wfma_ 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS--------RHSVAGELRLGLDGTSVPLGAAQWGEL 130 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC--------TTSCSEEEEEESSSSSSCTTCCEEEEC
T ss_pred cceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccc--------cceeeeEEEEEhHHccCCCCceEeEeC
Confidence 35889999999999999999999874 2568999999999876 889999999999999877777899999
Q ss_pred eeeC
Q 004297 474 LVLY 477 (763)
Q Consensus 474 ~~~~ 477 (763)
....
T Consensus 131 ~~~~ 134 (138)
T d1wfma_ 131 KTSG 134 (138)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7643
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.9e-17 Score=144.23 Aligned_cols=104 Identities=22% Similarity=0.365 Sum_probs=81.7
Q ss_pred cceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCEEEeeeeecCCCCCccccEEEEEeeC----CCcEEEEEE
Q 004297 361 IGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIIDSPTPKWNEQYTWEVFD----PCTVITIGV 431 (763)
Q Consensus 361 ~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~V 431 (763)
.+.|.|+|++|+||++. +..+.+||||++.+ +....+|++++++.||.|||.|.|.... ....|.|.|
T Consensus 13 ~~~L~V~V~~a~~L~~~---~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v 89 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 89 (125)
T ss_dssp TTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEeECCCCc---CCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence 37999999999999986 55689999999988 2346899999999999999999997432 245899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
||.+..+ .+++++||++.|+|+++..+.. .+||+|.
T Consensus 90 ~d~~~~~------~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 90 WDQARVR------EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEC-------------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EECCCCC------CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9998753 1256799999999999875543 6899983
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=2.8e-16 Score=142.36 Aligned_cols=115 Identities=20% Similarity=0.316 Sum_probs=92.8
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-----CCE
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-----GQK 397 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-----~~~ 397 (763)
+|+|.+.+++. +..+.|.|.|++|+||++. +..+.+||||++.+ ...
T Consensus 1 rG~l~l~l~Y~-------------------------~~~~~L~V~v~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~~ 52 (137)
T d2cm5a1 1 RGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKA 52 (137)
T ss_dssp CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---CC
T ss_pred CcEEEEEEEEE-------------------------CCCCEEEEEEEEEECCCCC---CCCCCcCeEEEEEEEcCCccce
Confidence 48888888873 3348999999999999876 55688999999987 224
Q ss_pred EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeee
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLL 474 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~ 474 (763)
..+|++++++.||.|||.|.|.+... ...|.|.|||++.++ +|++||++.|++..+..+ ..+||+|.
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~--------~~~~iG~~~i~l~~~~~~--~~~W~~l~ 122 (137)
T d2cm5a1 53 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK--------SNDYIGGCQLGISAKGER--LKHWYECL 122 (137)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCEEEEEEEEETTCCHHH--HHHHHHHH
T ss_pred eecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCC--------CCCEEEEEEeCccccCcc--hhhhhhHh
Confidence 57999999999999999999998743 568999999998876 889999999999876432 24566654
Q ss_pred e
Q 004297 475 V 475 (763)
Q Consensus 475 ~ 475 (763)
.
T Consensus 123 ~ 123 (137)
T d2cm5a1 123 K 123 (137)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.6e-16 Score=141.45 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=97.5
Q ss_pred cCceeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeeCCCCCCeeccEEEEEec--CC
Q 004297 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN----YKGTTRHFEKKTNPEWNQVFAFSKD--RI 96 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~--~~ 96 (763)
...++.+..++..+.+.|.|+|++|++|.. .+.+||||++++.+ ..++|++++++.||+|||+|.|.+. ++
T Consensus 11 ~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l 87 (138)
T d1wfma_ 11 QAPKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87 (138)
T ss_dssp SCCEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSS
T ss_pred cCCEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhc
Confidence 345677776666777899999999999953 46789999999954 3578999999999999999999984 44
Q ss_pred CCceEEEEEEeCCCC-CCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCC
Q 004297 97 QSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRK 147 (763)
Q Consensus 97 ~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 147 (763)
....|.|+|||.+.. ++++||++.|+|.++.... ....|+.|.+..
T Consensus 88 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 134 (138)
T d1wfma_ 88 PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSG 134 (138)
T ss_dssp TTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCS
T ss_pred cceEEEEEEeeecccccceeeeEEEEEhHHccCCC-----CceEeEeCCCCC
Confidence 578899999999988 8999999999999987543 257899998864
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.9e-16 Score=143.42 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=90.0
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCE---
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQK--- 397 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~--- 397 (763)
+|+|++++++. +..+.|.|.|++|+||+++ +..+.+||||++.+ ++.
T Consensus 1 rG~l~~sl~Y~-------------------------~~~~~L~V~v~~a~~L~~~---~~~~~~dpyvkv~l~~~~~~~~ 52 (138)
T d1w15a_ 1 RGELLVSLCYQ-------------------------STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRIS 52 (138)
T ss_dssp CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEEc-------------------------CCCCEEEEEEEEeECCCCC---CCCCCcCEEEEEEEeCCcccCc
Confidence 48888888873 3347999999999999987 55688999999987 333
Q ss_pred EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEeccccc------------
Q 004297 398 WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLE------------ 462 (763)
Q Consensus 398 ~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~------------ 462 (763)
..+|++++++.||.|||.|.|.+... ...|.|.|||++..+ ++++||++.|++....
T Consensus 53 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~--------~~~~iG~~~i~l~~~~~~~~hW~~ll~~ 124 (138)
T d1w15a_ 53 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS--------RNEVIGRLVLGATAEGSGGGHWKEICDF 124 (138)
T ss_dssp EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTS--------CCEEEEEEEESTTCCSHHHHHHHHHHHS
T ss_pred cccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCC--------CCCEEEEEEEcchhCCchHHHHHHHHhC
Confidence 46899999999999999999998642 447999999999876 8899999999998642
Q ss_pred CCCeEeeeEeee
Q 004297 463 TDRVYTHSYPLL 474 (763)
Q Consensus 463 ~~~~~~~~~~L~ 474 (763)
+++.+.+||+|.
T Consensus 125 ~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 125 PRRQIAKWHMLC 136 (138)
T ss_dssp TTCCEEEEEECB
T ss_pred CCCeeeECeEcc
Confidence 345666777774
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=5.5e-16 Score=143.60 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=98.8
Q ss_pred CceeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE--CCE
Q 004297 320 TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY--GQK 397 (763)
Q Consensus 320 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~--~~~ 397 (763)
.+..|+|.+.+++. +..+.|.|.|++|+||++. +..+.+||||++.+ ++.
T Consensus 8 ~~~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~---~~~~~~dpyV~v~l~~~~~ 59 (157)
T d1uowa_ 8 LEKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGK 59 (157)
T ss_dssp GGCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTE
T ss_pred ceeeeEEEEEEEEc-------------------------CCCCEEEEEEEEEEEcccc---cCCCCCCeeEEEEEecCCc
Confidence 34589999998873 3348999999999999876 55689999999987 332
Q ss_pred ---EEeeeeecCCCCCccccEEEEEeeCC---CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccc----------
Q 004297 398 ---WVRTRTIIDSPTPKWNEQYTWEVFDP---CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTL---------- 461 (763)
Q Consensus 398 ---~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l---------- 461 (763)
..+|++++++.||+|||.|.|.+... ...|.|.|||++.++ ++++||++.|++...
T Consensus 60 ~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~--------~~~~iG~~~i~l~~~~~~~~hW~~~ 131 (157)
T d1uowa_ 60 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDM 131 (157)
T ss_dssp EEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS--------CCCEEEEEEEETTCCHHHHHHHHHH
T ss_pred cccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCC--------CCceeEEEEEecccCChhHHHHHHH
Confidence 35899999999999999999998753 458999999999886 889999999999764
Q ss_pred --cCCCeEeeeEeeee
Q 004297 462 --ETDRVYTHSYPLLV 475 (763)
Q Consensus 462 --~~~~~~~~~~~L~~ 475 (763)
..++.+.+||+|..
T Consensus 132 ~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 132 LANPRRPIAQWHTLQV 147 (157)
T ss_dssp HHSTTCCEEEEEECBC
T ss_pred HhCCCCceeEeEeCCC
Confidence 23566789999954
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.1e-15 Score=138.30 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=92.9
Q ss_pred eceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEE---CCEEE
Q 004297 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKY---GQKWV 399 (763)
Q Consensus 323 ~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~---~~~~~ 399 (763)
-|+|.+++++.. ..+.|.|+|++|+||+.++. ..+.+||||++.+ +...+
T Consensus 8 ~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~d~--~~~~~dpyV~v~l~~~~~~~~ 60 (138)
T d1ugka_ 8 LGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDE--QSMTSDPYIKMTILPEKKHKV 60 (138)
T ss_dssp CCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBT--TTTBCEEEEEEEEETTTCSEE
T ss_pred CEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCC--CCCccceEEEEEEcCCCCEeE
Confidence 699999998732 23689999999999998632 2345899999998 55678
Q ss_pred eeeeecCCCCCccccEEEEEeeCC----CcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccC-CCeEeeeEeee
Q 004297 400 RTRTIIDSPTPKWNEQYTWEVFDP----CTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLET-DRVYTHSYPLL 474 (763)
Q Consensus 400 ~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~-~~~~~~~~~L~ 474 (763)
+|++++++.||.|||.|.|..... ...|+|+|||++.++ +|++||.+.|+|+++.. ......|+.+.
T Consensus 61 kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~--------~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 61 KTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS--------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp ECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC--------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred eCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC--------CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 999999999999999999974432 458999999999876 78999999999999853 33445555553
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=7e-16 Score=139.69 Aligned_cols=101 Identities=23% Similarity=0.376 Sum_probs=85.3
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~ 99 (763)
+.+...+.+..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+. ++...
T Consensus 4 l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 83 (137)
T d2cm5a1 4 ILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 83 (137)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGC
T ss_pred EEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHcccc
Confidence 4444444466689999999999999988889999999999832 4678999999999999999999984 33467
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIP 127 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~ 127 (763)
.|.|.|||.+.. ++++||++.+++..+.
T Consensus 84 ~l~v~v~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 84 SLDISVWDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred EEEEEeeeCCCCCCCCEEEEEEeCccccC
Confidence 899999999988 8999999999997643
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=4.7e-16 Score=140.82 Aligned_cols=100 Identities=27% Similarity=0.407 Sum_probs=78.4
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeeCCCCCCeeccEEEEEec--CCCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMG--N---YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~ 99 (763)
+.+...+.+..+.|.|+|++|+||+..+..+.+||||++++. + .+++|++++++.||.|||+|.|.+. +....
T Consensus 4 l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~ 83 (138)
T d1w15a_ 4 LLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEI 83 (138)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTE
T ss_pred EEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCcc
Confidence 444444445667999999999999999988999999999983 2 3568999999999999999999974 33456
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEcccc
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEI 126 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l 126 (763)
.|.|.|||++.. ++++||++.|++...
T Consensus 84 ~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 84 SVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred EEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 799999999988 899999999998754
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.6e-15 Score=135.74 Aligned_cols=105 Identities=27% Similarity=0.427 Sum_probs=86.4
Q ss_pred cCceeeeeecccCceeEEEEEEEEeecCCCCCCCC-CCCcEEEEEEC---CeeeeeeeeCCCCCCeeccEEEEEe-c--C
Q 004297 23 TGDKLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTG-SCDPYVEVKMG---NYKGTTRHFEKKTNPEWNQVFAFSK-D--R 95 (763)
Q Consensus 23 ~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~-~~dPyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v-~--~ 95 (763)
|...+++.|+ .+.+.|.|+|++|+||+.++..+ .+||||++.+. .++++|++++++.||.|||+|.|.. . +
T Consensus 9 G~l~~sl~Y~--~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 86 (138)
T d1ugka_ 9 GTLFFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ 86 (138)
T ss_dssp CEEEEEEEEE--GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHH
Confidence 3345555555 55679999999999999887655 47999999993 4678999999999999999999973 2 2
Q ss_pred CCCceEEEEEEeCCCC-CCeeeEEEEEEccccCCC
Q 004297 96 IQSSVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR 129 (763)
Q Consensus 96 ~~~~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 129 (763)
.....|.|+|||.+.+ ++++||++.|+|.++...
T Consensus 87 l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred cccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 3356899999999988 899999999999998644
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.3e-15 Score=141.09 Aligned_cols=120 Identities=30% Similarity=0.417 Sum_probs=93.7
Q ss_pred eeeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEecC--CCC
Q 004297 26 KLTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKDR--IQS 98 (763)
Q Consensus 26 ~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~ 98 (763)
++.+...+.+..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+.. ...
T Consensus 13 ~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~ 92 (157)
T d1uowa_ 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK 92 (157)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCc
Confidence 34444444456679999999999999988889999999999853 34689999999999999999999853 345
Q ss_pred ceEEEEEEeCCCC-CCeeeEEEEEEccccCCC--------CCCCCCCcCeEEEeecC
Q 004297 99 SVLEVTVKDKDFV-KDDFMGRVLFDLNEIPKR--------VPPDSPLAPQWYRLEDR 146 (763)
Q Consensus 99 ~~l~i~V~d~~~~-~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 146 (763)
..|.|+|||++.+ ++++||++.|++.....+ ..+ .....+|++|+++
T Consensus 93 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~-~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 93 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (157)
T ss_dssp CEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred cEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC-CCceeEeEeCCCC
Confidence 6899999999998 899999999998753211 001 1234689998764
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=2.7e-16 Score=143.84 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=92.2
Q ss_pred eeceEEEEEEEccCccccCCCcccCCCCCcchhhhccCCcceEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE----
Q 004297 322 FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK---- 397 (763)
Q Consensus 322 ~~G~l~l~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~---- 397 (763)
..|+|++++++. +..|.|.|.|++|+||++. +..|.+||||++.+.+.
T Consensus 5 ~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~ 56 (145)
T d1dqva2 5 DLGELNFSLCYL-------------------------PTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRL 56 (145)
T ss_dssp CCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTT
T ss_pred cceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCc---CCCCCcCceEEEEEccCCccc
Confidence 479999999873 3448999999999999876 55688999999988432
Q ss_pred -EEeeeeecCCCCCccccEEEEEeeC---CCcEEEEEEEeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEee
Q 004297 398 -WVRTRTIIDSPTPKWNEQYTWEVFD---PCTVITIGVFDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPL 473 (763)
Q Consensus 398 -~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L 473 (763)
..+|++++++.||.|||.|.|.+.. ....|.|.|||++.++ +|++||.+.|++..+.... ..+|++|
T Consensus 57 ~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~--------~~~~iG~~~i~l~~~~~~~-~~~W~~l 127 (145)
T d1dqva2 57 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG--------HNEVIGVCRVGPEAADPHG-REHWAEM 127 (145)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSS--------CCEEEEECCCSSCTTCHHH-HHHHHTS
T ss_pred eeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCC--------CCcEEEEEEECchHcCchh-hHHHHHH
Confidence 4689999999999999999998763 2567999999998876 7899999999998763211 2345554
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=3.9e-16 Score=142.70 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=85.3
Q ss_pred eeeeecccCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeeCCCCCCeeccEEEEEec--CCCCc
Q 004297 27 LTSTYDLVEQMQYLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN-----YKGTTRHFEKKTNPEWNQVFAFSKD--RIQSS 99 (763)
Q Consensus 27 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~ 99 (763)
+.+...|.+..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+. ++...
T Consensus 9 l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~ 88 (145)
T d1dqva2 9 LNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENV 88 (145)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSC
T ss_pred EEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCC
Confidence 4444444466789999999999999988889999999999965 2578999999999999999999874 33457
Q ss_pred eEEEEEEeCCCC-CCeeeEEEEEEccccC
Q 004297 100 VLEVTVKDKDFV-KDDFMGRVLFDLNEIP 127 (763)
Q Consensus 100 ~l~i~V~d~~~~-~d~~lG~~~i~l~~l~ 127 (763)
.|.|.|||.+.. ++++||++.|++..+.
T Consensus 89 ~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 89 GLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp CCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred EEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 799999999988 8999999999997763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.3e-14 Score=127.70 Aligned_cols=105 Identities=12% Similarity=0.270 Sum_probs=85.5
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEECCE-----EEeeeeecCCCCCccccEEEEEeeCCCcEEEEEEEeCCCC
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIIDSPTPKWNEQYTWEVFDPCTVITIGVFDNCHL 437 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~V~d~~~~ 437 (763)
.+.|.++.+..+++ ..|.+||||+|.+++. ..+|+++++|+||+|||+|+|.+.+ ...|.|.|||+
T Consensus 6 ~~~~~~~~~~~~~~-----~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~--- 76 (123)
T d1bdya_ 6 RISFNSYELGSLQA-----EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA--- 76 (123)
T ss_dssp EEEEEEEECCTTCC-----CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEE---
T ss_pred EEEEEEeecccCCC-----CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEc---
Confidence 45566666666653 4678999999999553 3578899999999999999999976 57899999996
Q ss_pred CCCCCCCCCCCCccEEEEEeccccc-----CCCeEeeeEeeeeeCCCCcccceEEEEEEEE
Q 004297 438 HGGDKAGGARDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLYPNGVKKMGEIHLAVRF 493 (763)
Q Consensus 438 ~~~~~~~~~~d~~lG~v~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 493 (763)
.|+++|.+.|++.+|. .+.....|++|. +.|+|++.++|
T Consensus 77 ---------dd~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~ 120 (123)
T d1bdya_ 77 ---------AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQY 120 (123)
T ss_dssp ---------TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred ---------cccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEE
Confidence 3579999999999983 466788999993 46999999987
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=9e-15 Score=128.63 Aligned_cols=113 Identities=17% Similarity=0.277 Sum_probs=87.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeeCCCCCCeeccEEEEEecCCCCceEEEEEEeCCCCCC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGNY-----KGTTRHFEKKTNPEWNQVFAFSKDRIQSSVLEVTVKDKDFVKD 113 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~l~i~V~d~~~~~d 113 (763)
.|+|+|....--......+.+||||+|++++. +.+|+++++|+||+|||+|.|.+.+ ...|.|.|||++ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d 78 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---E 78 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---T
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---c
Confidence 45555555433344555789999999999662 4679999999999999999999976 467999999975 7
Q ss_pred eeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCccceEEEEEEEEc
Q 004297 114 DFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKVRGELMLAVWMG 162 (763)
Q Consensus 114 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 162 (763)
+++|.+.+.+.++.............|++|+. .|+|++++.|.
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~------~Gkl~l~v~~f 121 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMCVQYF 121 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCC------CEEEEEEEEEe
Confidence 89999999999886543222345678999974 48999998764
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.8e-12 Score=110.61 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=81.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeee--CCCCCCeeccE-EEE-EecCCCCceEEEEEEeC
Q 004297 39 YLYVRVVKAKDLPPKDVTGSCDPYVEVKMGN------YKGTTRHF--EKKTNPEWNQV-FAF-SKDRIQSSVLEVTVKDK 108 (763)
Q Consensus 39 ~L~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~~~--~~t~nP~Wne~-f~f-~v~~~~~~~l~i~V~d~ 108 (763)
+|.|+|++|++|+.. ..||||+|++-+ .+.+|+++ .++.||.|||+ |.| .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999754 479999999832 33444443 67899999976 444 35555567899999998
Q ss_pred CCCCCeeeEEEEEEccccCCCCCCCCCCcCeEEEeecCCCCc-cceEEEEEEEE
Q 004297 109 DFVKDDFMGRVLFDLNEIPKRVPPDSPLAPQWYRLEDRKGDK-VRGELMLAVWM 161 (763)
Q Consensus 109 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~ 161 (763)
+ |++||++.++|..+..+ .++++|.+..|+. ..+.|.+.+.+
T Consensus 78 d---~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C---CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 5 79999999999998754 4788999988764 34556555543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-11 Score=108.22 Aligned_cols=107 Identities=18% Similarity=0.379 Sum_probs=76.8
Q ss_pred eEEEEEEEccCCCCCccCCCCCCCCcEEEEEE-C-----CEEEeeeee--cCCCCCccccE-EEE-EeeCC-CcEEEEEE
Q 004297 363 VLELGILNAQGLMPMKTKDGRGTTDAYCVAKY-G-----QKWVRTRTI--IDSPTPKWNEQ-YTW-EVFDP-CTVITIGV 431 (763)
Q Consensus 363 ~l~v~v~~a~~L~~~~~~~~~g~~Dpyv~v~~-~-----~~~~~T~~~--~~t~~P~wne~-~~~-~v~~~-~~~l~i~V 431 (763)
.|.|+|+.|++|+.. +.||||+|++ | ....+|+++ .+++||.|||. +.| .+..+ ...|.|.|
T Consensus 2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred EEEEEEEEeeCCCCC-------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE
Confidence 589999999999752 5899999988 2 233555553 46899999976 444 34444 45899999
Q ss_pred EeCCCCCCCCCCCCCCCCccEEEEEecccccCCCeEeeeEeeeeeCCCCcc-cceEEEEEEEE
Q 004297 432 FDNCHLHGGDKAGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLYPNGVK-KMGEIHLAVRF 493 (763)
Q Consensus 432 ~d~~~~~~~~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 493 (763)
||+ .|++||++.|+|+.+..| -++.||.+.. |.. ..+.|.+.+++
T Consensus 75 ~D~------------d~~~lG~~~ipl~~l~~G---yR~vpL~~~~--g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 75 MEE------------GNKFLGHRIIPINALNSG---YHHLCLHSES--NMPLTMPALFIFLEM 120 (122)
T ss_dssp EET------------TTEEEEEEEEEGGGBCCE---EEEEEEECTT--CCEEEEEEEEEEEEE
T ss_pred ECC------------CCCEEEEEEEEcccCcCC---ceEEEccCCC--cCCCCCceEEEEEEE
Confidence 996 367999999999999888 4678996533 322 23555555543
|