Citrus Sinensis ID: 004298
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 763 | 2.2.26 [Sep-21-2011] | |||||||
| O65418 | 777 | Anaphase-promoting comple | yes | no | 0.985 | 0.967 | 0.682 | 0.0 | |
| Q5RAQ5 | 817 | Anaphase-promoting comple | yes | no | 0.550 | 0.514 | 0.272 | 1e-39 | |
| Q9UJX5 | 808 | Anaphase-promoting comple | yes | no | 0.550 | 0.519 | 0.270 | 3e-39 | |
| Q91W96 | 807 | Anaphase-promoting comple | yes | no | 0.550 | 0.520 | 0.272 | 4e-39 | |
| Q54NI1 | 837 | Anaphase-promoting comple | yes | no | 0.547 | 0.499 | 0.217 | 4e-24 | |
| O42839 | 719 | Anaphase-promoting comple | yes | no | 0.539 | 0.573 | 0.207 | 1e-13 | |
| P34441 | 1027 | Abnormal embryogenesis pr | yes | no | 0.226 | 0.168 | 0.233 | 3e-07 | |
| Q6PBD6 | 305 | WD repeat-containing prot | no | no | 0.090 | 0.226 | 0.380 | 4e-05 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.103 | 0.062 | 0.298 | 6e-05 | |
| Q6GMD2 | 305 | WD repeat-containing prot | N/A | no | 0.090 | 0.226 | 0.366 | 8e-05 |
| >sp|O65418|APC4_ARATH Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/762 (68%), Positives = 620/762 (81%), Gaps = 10/762 (1%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
M +DE ++PFQLQFDKP+ QIKIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 4 MASDEEENIIPFQLQFDKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 63
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
GK VTSLCWRPDGKAIAVGLEDGTI+LHDVENGKLLR+LK H VAVVCLNWEED Q + +
Sbjct: 64 GKPVTSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRNLKPHDVAVVCLNWEEDGQSNTD 123
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
+ GN YEDRTSRFFPPAPR P+MPGLV+GD+ F DD EDS EL+N+S ++F+ILC+G
Sbjct: 124 ESGNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTG 183
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
D+DG+ICF+IFGIF IGKINIH+ + +P+ DE +C+L NASIYKVALSKDL L V+C
Sbjct: 184 DRDGNICFSIFGIFQIGKINIHELSLPVPHLDEHASCKLFNASIYKVALSKDLCRLVVMC 243
Query: 241 SGQLS-------QEELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
+G+L +E++ + GLHCL +DTSIF KRK EL+QVA QASNIEDLTEVIR
Sbjct: 244 TGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKYELHQVAQQASNIEDLTEVIRA 303
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VM KQW DA TF EKF SLSTLI+DNGL+SSPQEEFLSLLGGAR SP ++QFL NS
Sbjct: 304 SLSVMNKQWADAMKTFHEKFHSLSTLIIDNGLESSPQEEFLSLLGGARISPALNQFLVNS 363
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE GVKRV K+VCG GKELQ +VL+HLQPAAEIIGFR+GELRGLSRWRAR+ GIGLDE
Sbjct: 364 LGEVGVKRVLKSVCGTGKELQQVVLDHLQPAAEIIGFRIGELRGLSRWRARYQGIGLDEM 423
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
L+N ATEN+G+ LVQV+RFM VLSSVVQQFSNFFNWL++ IK LMQEP+DQL YNSEL+
Sbjct: 424 LLNEATENTGLLLVQVQRFMMVLSSVVQQFSNFFNWLVRSIKYLMQEPNDQLLSYNSELL 483
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
V+FLKFLYDQDPV+ LLE SE D+++DL+T+ RV++L+ FGGFS+C++L+RTL KEFQ
Sbjct: 484 VVFLKFLYDQDPVKDLLELSEAGDDIEIDLKTIGRVKELLQFGGFSECDFLQRTLAKEFQ 543
Query: 534 LLESSFKEAFLMPFTTISTKILCEDFLPLFP--LPSSPTSVFIPMSVSYYKGISQPHQAS 591
+ESSFK AF MPFTTIS KI C LPL P L ++ T IPMS+S+YK
Sbjct: 544 HMESSFKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNELSDDTPC 603
Query: 592 DHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVDL 651
+ DY+SFQVP+E F +I+NCIGI +G+ + ++ K GYTSLEAVLLSVP+GY CVDL
Sbjct: 604 QSGYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDL 663
Query: 652 SLYKEGQIVLLLNEACTSSD-SGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVFY 710
SLYK+ ++VLLLN+ T S+ SGEACMM+V+T DL F+S+S S L+ WEL LK S+
Sbjct: 664 SLYKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVN 723
Query: 711 LQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYIL 752
L+M N KVR +PHSV+APLAVSASRGVA V+A R+RALVYIL
Sbjct: 724 LEMENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYIL 765
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5RAQ5|APC4_PONAB Anaphase-promoting complex subunit 4 OS=Pongo abelii GN=ANAPC4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/466 (27%), Positives = 215/466 (46%), Gaps = 46/466 (9%)
Query: 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP----GKSVTS 66
F++ +K + +I W+P++DL+A+A ++LLHR ++ R+W+ P GK VT
Sbjct: 11 FRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTGKEVTC 70
Query: 67 LCWRPDGKAIAVGLED-GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK--NDFG 123
L WRPDGK +A L D I L DVE L S S V C++W E S F
Sbjct: 71 LAWRPDGKLLAFALADTKKIVLCDVEKPGSLHSF-SVEAPVSCMHWMEVTVESSVLTSFY 129
Query: 124 NIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKD 183
N ED ++ S F++++ D +L R +IL G
Sbjct: 130 NA---EDESNL--LLPKLPTLPKNYSSTSKIFSEENSDEIIKLLGDV--RLNILVLGGSS 182
Query: 184 GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243
G I +G+F I ++ GTC L LS DL L+V+
Sbjct: 183 GFIELYAYGMFKIARV-----------TGIAGTCLAL-------CLSSDLKSLSVVT--- 221
Query: 244 LSQEELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWT 303
E+ +G + L+T++ E+ ++A + ++I L + I SLT MC+ W
Sbjct: 222 ----EVSTNGASEVSYFQLETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWE 277
Query: 304 DATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVS 363
+ + L+ + + +S Q+EF+ LL + S + L N L G+K++
Sbjct: 278 EILMQMDSR---LTKFVQEKNTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLG 334
Query: 364 KAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSG 423
+++ + +Q +V++HLQ +E + + + EL+GL+ W+ ++ +GLD I A G
Sbjct: 335 QSIESSYSSIQKLVISHLQSGSESLLYHLSELKGLASWKQKYEPLGLDAAGIEEAITAVG 394
Query: 424 MFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F+++ ++V+ S ++ F FF WL + +L LP N
Sbjct: 395 SFILKANELLQVIDSSMKNFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Pongo abelii (taxid: 9601) |
| >sp|Q9UJX5|APC4_HUMAN Anaphase-promoting complex subunit 4 OS=Homo sapiens GN=ANAPC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 126/466 (27%), Positives = 218/466 (46%), Gaps = 46/466 (9%)
Query: 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP----GKSVTS 66
F++ +K + +I W+P++DL+A+A ++LLHR ++ R+W+ P GK VT
Sbjct: 11 FRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTGKEVTC 70
Query: 67 LCWRPDGKAIAVGLED-GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK--NDFG 123
L WRPDGK +A L D I L DVE + L S S V C++W E S F
Sbjct: 71 LAWRPDGKLLAFALADTKKIVLCDVEKPESLHSF-SVEAPVSCMHWMEVTVESSVLTSFY 129
Query: 124 NIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKD 183
N ED ++ + F++++ D +L R +IL G
Sbjct: 130 NA---EDESNL--LLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDV--RLNILVLGGSS 182
Query: 184 GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243
G I +G+F I ++ +A GTC L LS DL L+V+
Sbjct: 183 GFIELYAYGMFKIARVT----GIA-------GTCLAL-------CLSSDLKSLSVVT--- 221
Query: 244 LSQEELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWT 303
E+ +G + L+T++ E+ ++A + ++I L + I SLT MC+ W
Sbjct: 222 ----EVSTNGASEVSYFQLETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWE 277
Query: 304 DATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVS 363
+ + L+ + + +S Q+EF+ LL + S + L N L G+K++
Sbjct: 278 EILMQMDSR---LTKFVQEKNTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLG 334
Query: 364 KAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSG 423
+++ + +Q +V++HLQ +E + + + EL+G++ W+ ++ +GLD I A G
Sbjct: 335 QSIESSYSSIQKLVISHLQSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEEAITAVG 394
Query: 424 MFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F+++ ++V+ S ++ F FF WL + +L LP N
Sbjct: 395 SFILKANELLQVIDSSMKNFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Homo sapiens (taxid: 9606) |
| >sp|Q91W96|APC4_MOUSE Anaphase-promoting complex subunit 4 OS=Mus musculus GN=Anapc4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 127/466 (27%), Positives = 218/466 (46%), Gaps = 46/466 (9%)
Query: 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP----GKSVTS 66
F++ +K + +I W+P++DL+A+A ++LLHR ++ R+W+ P GK VT
Sbjct: 11 FRVVGEKQLPQEIIFLAWSPKRDLIALANTTGEVLLHRLASFHRVWSFPPNESTGKEVTC 70
Query: 67 LCWRPDGKAIAVGLED-GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK--NDFG 123
L WRPDGK +A L D I L DVE + L S S V C++W E S F
Sbjct: 71 LAWRPDGKLLAFALADTKKIILCDVEKPESLHSF-SVEAPVSCMHWTEVTVESSVLTSFY 129
Query: 124 NIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKD 183
N ED ++ S F++++ D +L R +IL G
Sbjct: 130 NA---EDESNL--LLPKLPTLPKNYNSTSKIFSEENSDEIIKLLGDV--RLNILVLGGSS 182
Query: 184 GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243
G I +G+F I ++ +A GTC L LS DL L+V+
Sbjct: 183 GFIELYAYGMFKIARVT----GIA-------GTCIAL-------CLSSDLKSLSVVT--- 221
Query: 244 LSQEELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWT 303
E+ G + L+T++ E+ ++A + ++I L + I SLT MC+ W
Sbjct: 222 ----EVSSGGESEVSYFQLETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWE 277
Query: 304 DATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVS 363
+ + L+ + + +S Q+EF+ LL + S + L N L G+K++
Sbjct: 278 EILMQMDSR---LTKFVQEKPTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLG 334
Query: 364 KAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSG 423
+++ + +Q +V++HLQ +E + + + EL+G++ W+ ++ +GLD I +A G
Sbjct: 335 QSIESSYSSIQKLVISHLQSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEDAITAVG 394
Query: 424 MFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F+++ ++V+ S ++ F FF WL + +L LP N
Sbjct: 395 SFILKANELLQVIDSSMKNFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Mus musculus (taxid: 10090) |
| >sp|Q54NI1|APC4_DICDI Anaphase-promoting complex subunit 4 OS=Dictyostelium discoideum GN=anapc4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 114/523 (21%), Positives = 221/523 (42%), Gaps = 105/523 (20%)
Query: 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----------- 59
F L DK + + +K DL+A+ T+D +I++HRF WQ+L+TI+
Sbjct: 4 FVLLNDKILPNDVKCYSCCTTMDLIALVTKDDQIVIHRFLTWQKLFTINHMSTTINDNNT 63
Query: 60 -----------------------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96
KS+ S+ W P+GK I++G EDG+I ++++EN KL+
Sbjct: 64 NNNNNNNNNNNNNNNDNNNDNDKSNKSIVSIQWSPNGKMISIGCEDGSIFIYNIENAKLI 123
Query: 97 RSLKSHTVAVVCLNWEEDAQPSK------------------------------------- 119
+H + L W ++ +
Sbjct: 124 NKSHNHKHPIHKLAWIKEVSQQRSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 183
Query: 120 --NDFGNIPTYEDRTSRFFPPA--PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR-F 174
N G+ + S PP +I Q L + + ++S++ L + R F
Sbjct: 184 QQNKNGSTKCNNNYVS---PPLFLSQIKQNMNLFPSISYYFENSKEENIYLGGDIYDRPF 240
Query: 175 SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNAS----IYKVALS 230
IL D G I FG+F I I++ +++ T L+ S I + L+
Sbjct: 241 DILICCDSIGVISLLAFGLFKIVTIDL----LSLLKQKYSNTHFLIKPSKSLKILDITLT 296
Query: 231 KDLFHLTVLCSGQLSQEELGGHGMHGLHCLV-LDTSIFSKRKDELYQVALQASNIEDLTE 289
+ L L+V+ +GL V +DTSI ++++E+++++LQ + L +
Sbjct: 297 ESLNKLSVMIETD-----------NGLFLSVTIDTSILLEKRNEIHEISLQYFLLFQLQQ 345
Query: 290 VIRESLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQF 349
+ + + ++W + K+ ++ D G SS ++E + LL SPP +QF
Sbjct: 346 SLDIHIKEITEKWKETQQQLSTKWVEFEKVLSDYGFSSSIEQELIDLLMCGVPSPPTNQF 405
Query: 350 LANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIG 409
+ N++ +K ++++ C + +E I++ ++ P+ I + L S + G+
Sbjct: 406 IVNNINIKKLK-LTESNCNSIRE---ILIKYILPSFLNIFHIITVLHNNSLENDGYKGL- 460
Query: 410 LDEKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLK 452
LD + N + G F ++++ ++ + +++FF+WL K
Sbjct: 461 LDTNTVKNILDYCGSFGMRLQSLETLICGIESHYTSFFSWLYK 503
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|O42839|APC4_SCHPO Anaphase-promoting complex subunit 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/462 (20%), Positives = 187/462 (40%), Gaps = 50/462 (10%)
Query: 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAV 78
V S +K P +L+A+ T + ++ R N QR+W + T LCW DG I V
Sbjct: 26 VGSGLKRVILCPSMELIAILTCSNHLICCRSNSQRIWDVDFHDLEATELCWNHDGNLIVV 85
Query: 79 GLEDGTITLHDVENGKLLRSL-KSHTVAVVCLNW---EEDAQPSKNDFGNIPTYEDRTSR 134
G ++G + + D G L+ S +AV+ + W E +NDF D T+
Sbjct: 86 GFKNGELKIIDSSTGHLVEQRPASRDLAVLMITWAMQETIVNEKRNDF-----LFDATAY 140
Query: 135 FFPPAPRIPQMPGLVSGDTGFTDDSEDSF---RELANSSHQRFSILCSGDKDGSICFNIF 191
P + +P + F+ + F R+ ++++ +L D+ G N+F
Sbjct: 141 M----PLLGTLPSSAKEERIFSSKAIAQFFEPRKREGENNKKVELLSILDERGIRYINMF 196
Query: 192 GIFPIGKINIHK--FHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEEL 249
+ IG+ + K ++ +P + +++ DL + ++C G
Sbjct: 197 SSYKIGESDSLKSALNLGVPISH---------------SITNDLAYHVLICKGG------ 235
Query: 250 GGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTD---AT 306
+ L+ +L + S + +A ++ ++ L + E L M +++ + +
Sbjct: 236 TNISLKTLYMPLLKNDLGS-----IVDIATMSTRMQHLVRYLEEVLNAMYEEFDNVFKSE 290
Query: 307 HTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAV 366
+F + FD+L + D S E + ++ G S + +++ +G+ +K +A+
Sbjct: 291 ASFIKTFDALVSKYSDTTFFSLQLELYQFIMNGI-PSDLLKEWINERVGDRVLKNWERAM 349
Query: 367 CGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFL 426
+ L + + PA E + + RG S W LD KL+ + G
Sbjct: 350 VNSYTSLIIFCQEFVIPACERLTVLLSSARGKSIWGHMKGNTLLDAKLVEDCLATLGYLQ 409
Query: 427 VQVERFMRVLSSVVQQFSNFFNWL-LKCIKLLMQEPSDQLPR 467
V F+ L + +F +WL ++ EPS P+
Sbjct: 410 NNVFSFLNCLFEEKKYMKHFISWLNYAIVEFNTSEPSSIPPQ 451
|
Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Has a role in promoting metaphase to anaphase transition via the ubiquitination of specific mitotic substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P34441|EMB30_CAEEL Abnormal embryogenesis protein 30 OS=Caenorhabditis elegans GN=emb-30 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPG------------KSVTSLCWRPDGKAI 76
++ + DL+A+ ++ +ILL R +W+ +W + SV++L + PDG+ +
Sbjct: 28 FSSQNDLIALGSKTGEILLKRTSWKMIWKTNINMIQAVGTECKLDSSVSALHFSPDGRFL 87
Query: 77 AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE-EDAQPSKNDFGNIPTYEDRTSRF 135
A G I L DVE GK+ S+K+ + + L+W +P ++ G T
Sbjct: 88 AAATSKGIIHLLDVETGKVRFSVKAASEKIAKLHWNCVREKPFISNLGEFTTRIKNVEAI 147
Query: 136 FPPAPRIPQMPGLVSGDTGFT----DDSEDSFR----------------ELANSSHQRFS 175
P + + F D+ SF+ E S Q
Sbjct: 148 EGAIELAETTPNISQEEIAFVYQRLDEDGSSFKHEDAHKESLERTLISTETFRESLQNTI 207
Query: 176 ILCSGDKDGSICFNIFGIFPIGKINI 201
+L + D D I + G+FP +I+I
Sbjct: 208 LLATDDMDSKIIVLVAGVFPYMEIDI 233
|
Required for the transition from metaphase to anaphase during meiosis and mitosis. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q6PBD6|WDR61_XENTR WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ--PS 118
GK + S+ + PDGK +A G DG I + D+ GKLL +L+ H + + L + D+Q +
Sbjct: 148 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 207
Query: 119 KNDFGNIPTYE 129
+D G I YE
Sbjct: 208 ASDDGYIKIYE 218
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 30 NPEKDLLAMATEDSKILLHRFNWQRLWTISPGKS----------VTSLCWRPDGKAIAVG 79
+P+ LA A+ DS + RLW IS G+ V ++ + P GK IA G
Sbjct: 987 SPDSQTLASASTDSSV--------RLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATG 1038
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
D T+ L ++ G+ L++L H+ ++ + W D Q
Sbjct: 1039 SADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQ 1075
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ--PS 118
GK + S+ + PDGK +A G DG I + D+ GKLL +L+ H + + L + D+Q +
Sbjct: 148 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSTDSQLLVT 207
Query: 119 KNDFGNIPTYE 129
+D G I Y+
Sbjct: 208 ASDDGYIKIYD 218
|
Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 763 | ||||||
| 302144194 | 771 | unnamed protein product [Vitis vinifera] | 0.996 | 0.985 | 0.758 | 0.0 | |
| 359495501 | 767 | PREDICTED: anaphase-promoting complex su | 0.994 | 0.989 | 0.758 | 0.0 | |
| 356521305 | 777 | PREDICTED: anaphase-promoting complex su | 1.0 | 0.981 | 0.719 | 0.0 | |
| 255567395 | 763 | Anaphase-promoting complex subunit, puta | 0.960 | 0.960 | 0.716 | 0.0 | |
| 357475883 | 835 | Anaphase promoting complex subunit [Medi | 0.993 | 0.907 | 0.658 | 0.0 | |
| 240256029 | 777 | anaphase-promoting complex subunit 4 [Ar | 0.985 | 0.967 | 0.682 | 0.0 | |
| 73745260 | 749 | anaphase promoting complex subunit 4 [Ar | 0.910 | 0.927 | 0.584 | 0.0 | |
| 224076802 | 476 | predicted protein [Populus trichocarpa] | 0.619 | 0.993 | 0.768 | 0.0 | |
| 242063296 | 744 | hypothetical protein SORBIDRAFT_04g03527 | 0.922 | 0.946 | 0.521 | 0.0 | |
| 302144192 | 592 | unnamed protein product [Vitis vinifera] | 0.650 | 0.837 | 0.722 | 0.0 |
| >gi|302144194|emb|CBI23321.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/774 (75%), Positives = 662/774 (85%), Gaps = 14/774 (1%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
METDE + LPFQLQFDKPV +QIKIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 1 METDEVEQGLPFQLQFDKPVPAQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 60
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
G+ +TSLCWRPDGKAIAVGLEDGT++LHDVENGKLLRS+KSHTVAVVCLNWEED Q
Sbjct: 61 GRCITSLCWRPDGKAIAVGLEDGTVSLHDVENGKLLRSMKSHTVAVVCLNWEEDGQ-LIG 119
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
D GNI YEDRTSRFFPPAPR+P+MPGLVSGDTGF DDSEDSF EL+NSSHQRF+ILCSG
Sbjct: 120 DSGNILAYEDRTSRFFPPAPRVPRMPGLVSGDTGFMDDSEDSFGELSNSSHQRFNILCSG 179
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDGSICF+IFG+FPIGKINIH+F V+ D Q T RLLNASI KVALSKDL HL V C
Sbjct: 180 DKDGSICFSIFGMFPIGKINIHEFSVSTLLMDNQVTYRLLNASICKVALSKDLCHLIVTC 239
Query: 241 SGQLSQEELG-------GHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
SG+L +E + GHG+ GLH LVLDTSIF KRK+EL+QVA QASNIEDLTEVIR
Sbjct: 240 SGELVEESVESRDRHIFGHGLLGLHSLVLDTSIFWKRKNELHQVAQQASNIEDLTEVIRA 299
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VMCKQW+DA H F EKFDSLS+LI+D+GLDSSPQEEFLSLL GARTSPP+HQFL +S
Sbjct: 300 SLSVMCKQWSDAMHMFHEKFDSLSSLIIDHGLDSSPQEEFLSLLCGARTSPPLHQFLVSS 359
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE G+KRVSKAV AGKELQ IVL+HLQPAAEIIGFRMGELRGLSRWR R+ IGLDE+
Sbjct: 360 LGEVGLKRVSKAVSNAGKELQFIVLDHLQPAAEIIGFRMGELRGLSRWRTRYKVIGLDER 419
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
LI+NATE +GM LVQVERFM +LSS VQQFSNFF+WLLKCIKLLM E SDQL +NSELV
Sbjct: 420 LIDNATEKAGMLLVQVERFMMILSSAVQQFSNFFSWLLKCIKLLMSETSDQLLPFNSELV 479
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
+IFL+FLYDQDPVRQLLE SEVDH+++++LETMQ++++LV GGFSD YL+RT+ KEFQ
Sbjct: 480 IIFLRFLYDQDPVRQLLELSEVDHNIEIELETMQKIKELVQLGGFSDSEYLQRTMAKEFQ 539
Query: 534 LLESSFKEAFLMPFTTISTKILCEDFLPLFPLPSSPTSVFIPMSVSYYKGISQP---HQA 590
+ESSFKEAF MPFTT+S KILCED LP+FP PSSP +V PMS+SYYK ISQ +Q
Sbjct: 540 QMESSFKEAFAMPFTTVSEKILCEDLLPMFPCPSSPFNV--PMSISYYKDISQAVSTYQT 597
Query: 591 SDHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVD 650
H FIDY++F+VP+E FSD+ANCIGI RGFMHD SS+KKGYTSLEAVLLSVP GYHCVD
Sbjct: 598 CQHRFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVD 657
Query: 651 LSLYKEGQIVLLLN-EACTSSDSGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVF 709
LSLYKE Q+VLLLN TS SG A M++V+ +DLPFVSV RS L++W+LH+LKDS+
Sbjct: 658 LSLYKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSIT 717
Query: 710 YLQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYILEEDEDEVSDTE 763
YLQM N KVR IPHS +APLAVSASRGVA V+A RKRALVYILEEDEDE +D E
Sbjct: 718 YLQMENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 771
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495501|ref|XP_002271089.2| PREDICTED: anaphase-promoting complex subunit 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/771 (75%), Positives = 661/771 (85%), Gaps = 12/771 (1%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
METDE + LPFQLQFDKPV +QIKIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 1 METDEVEQGLPFQLQFDKPVPAQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 60
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
G+ +TSLCWRPDGKAIAVGLEDGT++LHDVENGKLLRS+KSHTVAVVCLNWEED Q
Sbjct: 61 GRCITSLCWRPDGKAIAVGLEDGTVSLHDVENGKLLRSMKSHTVAVVCLNWEEDGQ-LIG 119
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
D GNI YEDRTSRFFPPAPR+P+MPGLVSGDTGF DDSEDSF EL+NSSHQRF+ILCSG
Sbjct: 120 DSGNILAYEDRTSRFFPPAPRVPRMPGLVSGDTGFMDDSEDSFGELSNSSHQRFNILCSG 179
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDGSICF+IFG+FPIGKINIH+F V+ D Q T RLLNASI KVALSKDL HL V C
Sbjct: 180 DKDGSICFSIFGMFPIGKINIHEFSVSTLLMDNQVTYRLLNASICKVALSKDLCHLIVTC 239
Query: 241 SGQLSQEELG-------GHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
SG+L +E + GHG+ GLH LVLDTSIF KRK+EL+QVA QASNIEDLTEVIR
Sbjct: 240 SGELVEESVESRDRHIFGHGLLGLHSLVLDTSIFWKRKNELHQVAQQASNIEDLTEVIRA 299
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VMCKQW+DA H F EKFDSLS+LI+D+GLDSSPQEEFLSLL GARTSPP+HQFL +S
Sbjct: 300 SLSVMCKQWSDAMHMFHEKFDSLSSLIIDHGLDSSPQEEFLSLLCGARTSPPLHQFLVSS 359
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE G+KRVSKAV AGKELQ IVL+HLQPAAEIIGFRMGELRGLSRWR R+ IGLDE+
Sbjct: 360 LGEVGLKRVSKAVSNAGKELQFIVLDHLQPAAEIIGFRMGELRGLSRWRTRYKVIGLDER 419
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
LI+NATE +GM LVQVERFM +LSS VQQFSNFF+WLLKCIKLLM E SDQL +NSELV
Sbjct: 420 LIDNATEKAGMLLVQVERFMMILSSAVQQFSNFFSWLLKCIKLLMSETSDQLLPFNSELV 479
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
+IFL+FLYDQDPVRQLLE SEVDH+++++LETMQ++++LV GGFSD YL+RT+ KEFQ
Sbjct: 480 IIFLRFLYDQDPVRQLLELSEVDHNIEIELETMQKIKELVQLGGFSDSEYLQRTMAKEFQ 539
Query: 534 LLESSFKEAFLMPFTTISTKILCEDFLPLFPLPSSPTSVFIPMSVSYYKGISQPHQASDH 593
+ESSFKEAF MPFTT+S KILCED LP+FP PSSP +V PMS+SYYK +S +Q H
Sbjct: 540 QMESSFKEAFAMPFTTVSEKILCEDLLPMFPCPSSPFNV--PMSISYYKAVST-YQTCQH 596
Query: 594 DFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVDLSL 653
FIDY++F+VP+E FSD+ANCIGI RGFMHD SS+KKGYTSLEAVLLSVP GYHCVDLSL
Sbjct: 597 RFIDYIAFKVPDESFSDVANCIGIARGFMHDSSSVKKGYTSLEAVLLSVPDGYHCVDLSL 656
Query: 654 YKEGQIVLLLN-EACTSSDSGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVFYLQ 712
YKE Q+VLLLN TS SG A M++V+ +DLPFVSV RS L++W+LH+LKDS+ YLQ
Sbjct: 657 YKESQMVLLLNETTSTSESSGSAHMLVVQVTDLPFVSVPRSTNLNYWKLHELKDSITYLQ 716
Query: 713 MGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYILEEDEDEVSDTE 763
M N KVR IPHS +APLAVSASRGVA V+A RKRALVYILEEDEDE +D E
Sbjct: 717 MENEKVRSIPHSAIAPLAVSASRGVACVFAARKRALVYILEEDEDEATDAE 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521305|ref|XP_003529297.1| PREDICTED: anaphase-promoting complex subunit 4 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/777 (71%), Positives = 654/777 (84%), Gaps = 14/777 (1%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
METDE+ RV+PFQLQFDKP+ASQIKIAEWNPEKDLLAM T+DSKILLHRFNWQRLWTI+P
Sbjct: 1 METDESSRVIPFQLQFDKPLASQIKIAEWNPEKDLLAMVTDDSKILLHRFNWQRLWTITP 60
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
G+ +TSLCWRPDGKAIAVGL+DGT++LHDVENGKLLRSLKSH A++CLNWEE++Q +
Sbjct: 61 GRCITSLCWRPDGKAIAVGLDDGTLSLHDVENGKLLRSLKSHCAAIICLNWEEESQLITD 120
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
DFG+ YEDRTSRFFPPAPR+P+MPGLVSGD GF DDSEDSF+EL+NSSHQRF+ILCS
Sbjct: 121 DFGHTSKYEDRTSRFFPPAPRVPRMPGLVSGDNGFMDDSEDSFQELSNSSHQRFNILCSA 180
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDG+ICF+IFGIFPIGK+NIH + + + NA I+KVALSKDL L V C
Sbjct: 181 DKDGNICFSIFGIFPIGKVNIHNLTFPTFCDGSEMSNGVSNALIHKVALSKDLCRLIVTC 240
Query: 241 SGQLSQ--EELG-----GHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
SG L + ++LG G+ HGLHCL L+T+IF RK+EL+QVA QASNIEDLTEV+R
Sbjct: 241 SGDLVKVGDDLGEIQMVGNNEHGLHCLALNTAIFWNRKNELHQVAQQASNIEDLTEVVRT 300
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VMC+QW+DA +TF+EKF SLSTLI+++GLDSSPQEEFLSLLGGARTSPP+HQFL N+
Sbjct: 301 SLSVMCRQWSDAMNTFQEKFRSLSTLIINHGLDSSPQEEFLSLLGGARTSPPVHQFLVNT 360
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE GVKR+SK + GAGKELQ IVL+HLQPA E+IGFR+GELRGLSRWRAR+HGIGLDE
Sbjct: 361 LGEVGVKRISKVLSGAGKELQRIVLDHLQPAVEVIGFRIGELRGLSRWRARYHGIGLDES 420
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
LINNATE +GM LVQVERFMRVLSSVVQQ+SNFFNWLLKCIKLLM EPSDQL YNSELV
Sbjct: 421 LINNATEKAGMLLVQVERFMRVLSSVVQQYSNFFNWLLKCIKLLMSEPSDQLLPYNSELV 480
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
++FLKFLY+QDPV+QLLE SE +++V++DLETMQRVR+LV FGGF+D YLRRTL+KEFQ
Sbjct: 481 IVFLKFLYEQDPVKQLLEVSETEYEVEIDLETMQRVRELVQFGGFADTEYLRRTLVKEFQ 540
Query: 534 LLESSFKEAFLMPFTTISTKILCEDF---LPLFPLPSSPTSVFIPMSVSYYKGISQ---P 587
L+E SFKEAF MPFTTIS KILCED PL LP S +S++IP SVSYY+ S+ P
Sbjct: 541 LMELSFKEAFEMPFTTISRKILCEDILPLFPLPSLPKSSSSMWIPTSVSYYEDPSRASVP 600
Query: 588 HQASDHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYH 647
+ + FIDY+SFQVP+E FSDI NCI I+RGFMHD +KKGY+SLEAVLL VP Y
Sbjct: 601 PYSCQNQFIDYISFQVPDECFSDIVNCICIVRGFMHDSDCLKKGYSSLEAVLLCVPVDYQ 660
Query: 648 CVDLSLYKEGQIVLLLNEACTSSDS-GEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKD 706
CVDLSLYK+ QIVLLLN+A +S+S G+ CMMI++ SDLP+VS+SRS +D W L +LKD
Sbjct: 661 CVDLSLYKDSQIVLLLNKATNTSESAGDGCMMILQVSDLPYVSMSRSACIDVWRLPELKD 720
Query: 707 SVFYLQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYILEEDEDEVSDTE 763
SV YL +G+ K R I HSV+APLAVSASRGVA V+A KRALVYILEEDEDEVSD E
Sbjct: 721 SVAYLNIGDEKSRTIRHSVIAPLAVSASRGVACVFAATKRALVYILEEDEDEVSDVE 777
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567395|ref|XP_002524677.1| Anaphase-promoting complex subunit, putative [Ricinus communis] gi|223536038|gb|EEF37696.1| Anaphase-promoting complex subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1112 bits (2877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/793 (71%), Positives = 644/793 (81%), Gaps = 60/793 (7%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
METD+ RVLPFQLQFDKPVASQIKIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 1 METDDEQRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 60
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
G +TSLCW PDGKAIAVGLEDGTI+LHDVENGKLLRSL+SHTVAVVCLNWEED +K+
Sbjct: 61 GGCITSLCWHPDGKAIAVGLEDGTISLHDVENGKLLRSLRSHTVAVVCLNWEEDGLVNKD 120
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
D N TYEDRTSRFFPPAP+ P+MPG+VSGDTGF D SEDS++EL++SS+QRF+ILCS
Sbjct: 121 DLCNYLTYEDRTSRFFPPAPKPPRMPGVVSGDTGFMDGSEDSYQELSSSSYQRFNILCSA 180
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDGSICF+IFGIFPIG+I VALSKDL HL V+C
Sbjct: 181 DKDGSICFSIFGIFPIGQI---------------------------VALSKDLCHLIVMC 213
Query: 241 SGQLSQE-------ELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
SG+ S+ ++ GHG H L VLDTSIF KRK+EL+Q+A QASNIE+LTEVIR
Sbjct: 214 SGEFSENMVESRESQMTGHGSHSL---VLDTSIFFKRKNELHQLAQQASNIEELTEVIRA 270
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNG-----------------LDSSPQEEFLSL 336
SL+VM KQW+DA F EKF SLSTLI D+G L+SSPQEEFLSL
Sbjct: 271 SLSVMSKQWSDAMRMFHEKFGSLSTLINDHGNCWSAVPFTGFYCFHIALESSPQEEFLSL 330
Query: 337 LGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELR 396
LGGARTSP IHQFL NSLGE GVKRVSK VCGAGKELQ IVL+H+QPAAEI+ FRMGELR
Sbjct: 331 LGGARTSPAIHQFLVNSLGELGVKRVSKVVCGAGKELQRIVLDHMQPAAEIVAFRMGELR 390
Query: 397 GLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKL 456
GLSRWRAR+ GIGLDE LI+NATE SGM LVQ+ERFMRVLSSV QQFSNFF+WLLKCIKL
Sbjct: 391 GLSRWRARYQGIGLDEMLIDNATEKSGMILVQIERFMRVLSSVEQQFSNFFSWLLKCIKL 450
Query: 457 LMQEPSDQLPRYNSELVVIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFG 516
LMQEPSDQL Y+SELVVIFLKFLYDQDPVRQLLE +EV HD++VDLETMQRV++LV FG
Sbjct: 451 LMQEPSDQLLPYSSELVVIFLKFLYDQDPVRQLLELTEVGHDIEVDLETMQRVKELVQFG 510
Query: 517 GFSDCNYLRRTLLKEFQLLESSFKEAFLMPFTTISTKILCEDFLPLFPLPSSP--TSVFI 574
GFSDC YL+RTL +EFQ +ESSFKEAF MPFTTIS KI+C D LPLFPL SSP T++ I
Sbjct: 511 GFSDCKYLQRTLAEEFQQMESSFKEAFQMPFTTISRKIICNDLLPLFPLSSSPASTAMKI 570
Query: 575 PMSVSYYKGISQP---HQASDHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKG 631
P+S+SYY+ +SQ HQ + +DY+ FQVP EP S+I+N IGI+RGFMHD+S+I+KG
Sbjct: 571 PLSISYYEEVSQSVSVHQTYEQSLVDYICFQVPKEPSSNISNHIGIMRGFMHDLSNIRKG 630
Query: 632 YTSLEAVLLSVPSGYHCVDLSLYKEGQIVLLLNEACTSSD-SGEACMMIVRTSDLPFVSV 690
YTSLEAVLLS+P+GY+CVDLSLYK+ QIVLLLN TSS+ SG+ACMM+V+ S+LPFVS+
Sbjct: 631 YTSLEAVLLSIPAGYNCVDLSLYKDSQIVLLLNAIATSSESSGDACMMVVQASELPFVSI 690
Query: 691 SRSPYLDHWELHQLKDSVFYLQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVY 750
SRS L+ W L QLKDS LQM N KVR IPHSV+APLAVSASRGVA V+ATRKRALVY
Sbjct: 691 SRSSSLNIWRLDQLKDSSVQLQMENEKVRCIPHSVIAPLAVSASRGVACVFATRKRALVY 750
Query: 751 ILEEDEDEVSDTE 763
ILEEDEDEV + E
Sbjct: 751 ILEEDEDEVPEIE 763
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475883|ref|XP_003608227.1| Anaphase promoting complex subunit [Medicago truncatula] gi|355509282|gb|AES90424.1| Anaphase promoting complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/829 (65%), Positives = 635/829 (76%), Gaps = 71/829 (8%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
ME DEA RVLPFQLQFDKP+ASQ+KIAEWNPEKDLLAM ++DSKILLHRFNWQRLWTI+P
Sbjct: 1 MEMDEACRVLPFQLQFDKPLASQVKIAEWNPEKDLLAMVSDDSKILLHRFNWQRLWTITP 60
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
GK VTSLCWRPDGKAIAVGL+DGT++L+DVENGKLLRSLKSH A++CLNWEED+ +
Sbjct: 61 GKCVTSLCWRPDGKAIAVGLDDGTLSLYDVENGKLLRSLKSHCAAIICLNWEEDSHLITD 120
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
D + YEDRTSRFFPPAP+IP+MPGLVSGD GF DD +DSF EL+NSSHQRF++LCSG
Sbjct: 121 DHYHTSKYEDRTSRFFPPAPKIPRMPGLVSGDNGFMDDGDDSFEELSNSSHQRFNVLCSG 180
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDG+ICF+IFGIFPIGK NIH + + + RLLNA I+KVALSKDL L V+C
Sbjct: 181 DKDGNICFSIFGIFPIGKTNIHNLTFPTSSDGAKSSKRLLNACIHKVALSKDLCRLIVMC 240
Query: 241 SGQLSQ--EELG-----GHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
SG L + ++LG GH +GLHCL L+T+IF RK+EL+QVA QASNIEDLTEV+R
Sbjct: 241 SGDLVEVVDDLGVIHMAGHNANGLHCLALNTAIFWNRKNELHQVAQQASNIEDLTEVVRA 300
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VM +QW+DA HTF+EKF+SLSTLI D+GLDSSPQEEFL LLGGARTSPP+HQFL ++
Sbjct: 301 SLSVMSRQWSDAMHTFKEKFNSLSTLITDHGLDSSPQEEFLGLLGGARTSPPVHQFLVST 360
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE GVKR+SK +CGAGKELQ IVL HLQPA E+IGFRMGELRGLSRWRAR+HGIGLDE
Sbjct: 361 LGEVGVKRISKVLCGAGKELQRIVLEHLQPAVEVIGFRMGELRGLSRWRARYHGIGLDEP 420
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
LI+NATE +GM LVQVERFMRVLSSV+QQ+SNFFNWLLKCIKLLM EPSDQL YNSELV
Sbjct: 421 LISNATEKAGMLLVQVERFMRVLSSVLQQYSNFFNWLLKCIKLLMSEPSDQLLPYNSELV 480
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDL------------------------------ 503
+IFLKFLY+QDPV+QLLE SE D+DV++D
Sbjct: 481 IIFLKFLYEQDPVKQLLEISETDYDVEIDFFGCFENLIGIIYINPLKFYYTNEKFHSGED 540
Query: 504 ETMQRVR---------------------------DLVNFGGFSDCNYLRRTLLKEFQLLE 536
QRV+ +LV FGGFSD YLRRTL KEFQ LE
Sbjct: 541 LNFQRVKKATQCHKSLTGAGSRVVDLLETAERIKELVQFGGFSDTEYLRRTLAKEFQQLE 600
Query: 537 SSFKEAFLMPFTTISTKILCED---FLPLFPLPSSPTSVFIPMSVSYYKGISQP---HQA 590
SFKEAF MPFTTIS KILCED PL LP++ + I S+SYY+ S+ H
Sbjct: 601 LSFKEAFQMPFTTISRKILCEDLLPLFPLPSLPNASSMTRISTSISYYEDSSRASSSHYT 660
Query: 591 SDHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVD 650
H IDY+SFQVP+E FSDI CI I+RGFMHD S+KKGY+SLEAVLL VP Y C+D
Sbjct: 661 GQHQVIDYISFQVPDESFSDIEKCICIVRGFMHDADSLKKGYSSLEAVLLRVPVDYQCID 720
Query: 651 LSLYKEGQIVLLLNEACTSSDS-GEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVF 709
LSLYK+ QIVLLLN+A +S+S G+ CM+I++ SDLP+VS+SRS Y+D W L +LKDS
Sbjct: 721 LSLYKDSQIVLLLNKATNTSESAGDGCMIILQASDLPYVSISRSAYIDVWRLQELKDSAA 780
Query: 710 YLQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYILEEDEDE 758
L +G+ K R IPH V+APLAVSASRGVA V+A RKRALVYILEEDEDE
Sbjct: 781 CLHIGDEKTRTIPHCVIAPLAVSASRGVACVFAARKRALVYILEEDEDE 829
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240256029|ref|NP_193884.6| anaphase-promoting complex subunit 4 [Arabidopsis thaliana] gi|302595935|sp|O65418.2|APC4_ARATH RecName: Full=Anaphase-promoting complex subunit 4; AltName: Full=Cyclosome subunit 4 gi|332659063|gb|AEE84463.1| anaphase-promoting complex subunit 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/762 (68%), Positives = 620/762 (81%), Gaps = 10/762 (1%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
M +DE ++PFQLQFDKP+ QIKIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 4 MASDEEENIIPFQLQFDKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 63
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
GK VTSLCWRPDGKAIAVGLEDGTI+LHDVENGKLLR+LK H VAVVCLNWEED Q + +
Sbjct: 64 GKPVTSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRNLKPHDVAVVCLNWEEDGQSNTD 123
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
+ GN YEDRTSRFFPPAPR P+MPGLV+GD+ F DD EDS EL+N+S ++F+ILC+G
Sbjct: 124 ESGNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTG 183
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
D+DG+ICF+IFGIF IGKINIH+ + +P+ DE +C+L NASIYKVALSKDL L V+C
Sbjct: 184 DRDGNICFSIFGIFQIGKINIHELSLPVPHLDEHASCKLFNASIYKVALSKDLCRLVVMC 243
Query: 241 SGQLS-------QEELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
+G+L +E++ + GLHCL +DTSIF KRK EL+QVA QASNIEDLTEVIR
Sbjct: 244 TGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKYELHQVAQQASNIEDLTEVIRA 303
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VM KQW DA TF EKF SLSTLI+DNGL+SSPQEEFLSLLGGAR SP ++QFL NS
Sbjct: 304 SLSVMNKQWADAMKTFHEKFHSLSTLIIDNGLESSPQEEFLSLLGGARISPALNQFLVNS 363
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE GVKRV K+VCG GKELQ +VL+HLQPAAEIIGFR+GELRGLSRWRAR+ GIGLDE
Sbjct: 364 LGEVGVKRVLKSVCGTGKELQQVVLDHLQPAAEIIGFRIGELRGLSRWRARYQGIGLDEM 423
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
L+N ATEN+G+ LVQV+RFM VLSSVVQQFSNFFNWL++ IK LMQEP+DQL YNSEL+
Sbjct: 424 LLNEATENTGLLLVQVQRFMMVLSSVVQQFSNFFNWLVRSIKYLMQEPNDQLLSYNSELL 483
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
V+FLKFLYDQDPV+ LLE SE D+++DL+T+ RV++L+ FGGFS+C++L+RTL KEFQ
Sbjct: 484 VVFLKFLYDQDPVKDLLELSEAGDDIEIDLKTIGRVKELLQFGGFSECDFLQRTLAKEFQ 543
Query: 534 LLESSFKEAFLMPFTTISTKILCEDFLPLFP--LPSSPTSVFIPMSVSYYKGISQPHQAS 591
+ESSFK AF MPFTTIS KI C LPL P L ++ T IPMS+S+YK
Sbjct: 544 HMESSFKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNELSDDTPC 603
Query: 592 DHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVDL 651
+ DY+SFQVP+E F +I+NCIGI +G+ + ++ K GYTSLEAVLLSVP+GY CVDL
Sbjct: 604 QSGYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDL 663
Query: 652 SLYKEGQIVLLLNEACTSSD-SGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVFY 710
SLYK+ ++VLLLN+ T S+ SGEACMM+V+T DL F+S+S S L+ WEL LK S+
Sbjct: 664 SLYKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVN 723
Query: 711 LQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYIL 752
L+M N KVR +PHSV+APLAVSASRGVA V+A R+RALVYIL
Sbjct: 724 LEMENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYIL 765
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|73745260|gb|AAZ81947.1| anaphase promoting complex subunit 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/794 (58%), Positives = 559/794 (70%), Gaps = 99/794 (12%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKI--------AEWNPEKDLLAMATEDSKILLHRFNW 52
M +DE ++PFQLQFDKP+ Q+ + AEWNPEKDLLAM TEDSKILLHRFNW
Sbjct: 1 MASDEEENIIPFQLQFDKPIPFQVLVLLLLKIKIAEWNPEKDLLAMVTEDSKILLHRFNW 60
Query: 53 QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE 112
QRLWTISPGK VTSLCWRPDGKAIAVGLEDGTI+LHDVE L
Sbjct: 61 QRLWTISPGKPVTSLCWRPDGKAIAVGLEDGTISLHDVEAKFGL---------------- 104
Query: 113 EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172
+++ GN YEDRTSRFFPPAPR P+MPGLV+GD+ F DD EDS EL+N+S +
Sbjct: 105 ------QDESGNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMDDGEDSLAELSNTSFR 158
Query: 173 RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD 232
+F+ILC+GD+DG+ICF+IFGIF IGKI VALSKD
Sbjct: 159 KFNILCTGDRDGNICFSIFGIFQIGKI---------------------------VALSKD 191
Query: 233 LFHLTVLCSGQLS-------QEELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIE 285
L L V+C+G+L +E++ + GLHCL +DTSIF KRK EL+QVA QASNIE
Sbjct: 192 LCRLVVMCTGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKYELHQVAQQASNIE 251
Query: 286 DLTEVIRESLTVMCKQWTDATHTFREKFDSLSTLIVDNG--------------LDSSPQE 331
DLTEVIR SL+VM KQW DA TF EKF SLSTLI+DNG L+SSPQE
Sbjct: 252 DLTEVIRASLSVMNKQWADAMKTFHEKFHSLSTLIIDNGICHYQFGFVAFLLGLESSPQE 311
Query: 332 EFLSLLGGARTSPPIHQFLANSLGEA----------GVKRVSKAVCGAGKELQLIVLNHL 381
EFLSLLGGAR SP ++QFL NSLGE GVKRV K+VCG GKELQ +VL+HL
Sbjct: 312 EFLSLLGGARISPALNQFLVNSLGEVVSFTCLIFFRGVKRVLKSVCGTGKELQQVVLDHL 371
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
QPAAEIIGFR+GELRGLSRWRAR+ GIGLDE L+N ATEN+G+ LVQV+RFM VLSSVVQ
Sbjct: 372 QPAAEIIGFRIGELRGLSRWRARYQGIGLDEMLLNEATENTGLLLVQVQRFMMVLSSVVQ 431
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYNSELVVIFLKFLYDQDPVRQLLEPSEVDHDVDV 501
QFSNFFNWL++ IK LMQEP+DQL YNSEL+V+FLKFLYDQDPV+ LLE SE D+++
Sbjct: 432 QFSNFFNWLVRSIKYLMQEPNDQLLSYNSELLVVFLKFLYDQDPVKDLLELSEAGDDIEI 491
Query: 502 DLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQLLESSFKEAFLMPFTTISTKILCEDFLP 561
DL+T+ RV++L+ FGGFS+C++L+RTL KEFQ +ESSFK A MPFTTIS KI C LP
Sbjct: 492 DLKTIGRVKELLQFGGFSECDFLQRTLAKEFQHMESSFKMALQMPFTTISRKISCMKLLP 551
Query: 562 LFP--LPSSPTSVFIPMSVSYYKGISQPHQASDHDFIDYVSFQVPNEPFSDIANCIGILR 619
L P L ++ T IPMS+S+YK + DY+SFQVP+E F +I+NCIGI +
Sbjct: 552 LCPLQLSTTQTPTTIPMSLSFYKNELSDDTPCQSGYTDYISFQVPDETFPEISNCIGIAK 611
Query: 620 GFMHDMSSIKKGYTSLEAVLLSVPSGYHCVDLSLYKEGQIVLLLNEACTSSD-SGEACMM 678
G M + Y L A L+ + C+ ++ ++VLLLN+ T S+ SGEACMM
Sbjct: 612 GKMVIILWKPFCYLYLMATLVLI-----CLS---TRDKELVLLLNKTNTDSEGSGEACMM 663
Query: 679 IVRTSDLPFVSVSRSPYLDHWELHQLKDSVFYLQMGNAKVRIIPHSVVAPLAVSASRGVA 738
+V+T DL F+S+S S L+ WEL LK S+ L+M N KVR +PHSV+APLAVSASRGVA
Sbjct: 664 VVQTGDLAFISISGSSSLNQWELEDLKGSIVNLEMENEKVRKVPHSVIAPLAVSASRGVA 723
Query: 739 SVYATRKRALVYIL 752
V+A R+RALVYIL
Sbjct: 724 CVFAERRRALVYIL 737
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224076802|ref|XP_002304999.1| predicted protein [Populus trichocarpa] gi|222847963|gb|EEE85510.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/506 (76%), Positives = 426/506 (84%), Gaps = 33/506 (6%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
METDE RVLPFQLQFDKPVASQ+KIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 1 METDETDRVLPFQLQFDKPVASQVKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 60
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
G+++TSLCWRPDGKAIAVGLEDGTI LHDVENGKLLRSLKSHTVAVVCLNWEE+ Q ++
Sbjct: 61 GRNITSLCWRPDGKAIAVGLEDGTIYLHDVENGKLLRSLKSHTVAVVCLNWEEEGQLIRD 120
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
D N +YEDRTSRFFPPAPR+P+MPG+VSGDTGF DDSEDS+REL+NSS+QRF+ILCSG
Sbjct: 121 DSKNSSSYEDRTSRFFPPAPRVPRMPGVVSGDTGFMDDSEDSYRELSNSSYQRFNILCSG 180
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDGSICF+IFGIFPIGKI V+LSKDL L V+C
Sbjct: 181 DKDGSICFSIFGIFPIGKI---------------------------VSLSKDLCRLIVMC 213
Query: 241 SGQLSQEELGGHGM---HGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTV 297
SG+L++ G+H LVLDTSIF KRK EL+Q+A QASNIEDLTEVIR SL+V
Sbjct: 214 SGELNENTESRESQMVKQGMHSLVLDTSIFWKRKSELHQLAQQASNIEDLTEVIRASLSV 273
Query: 298 MCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEA 357
MCKQW+DA HTF EKFDSLSTLI+D+ LDS+PQEEFLSLLGGARTS +HQFL NSLGE
Sbjct: 274 MCKQWSDAMHTFHEKFDSLSTLIIDHALDSTPQEEFLSLLGGARTSSAVHQFLVNSLGEV 333
Query: 358 GVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINN 417
GVKRV K +CG KELQ IVL+HLQPAAEIIGFRMGELRGLSRWRAR+HGIGLDE LINN
Sbjct: 334 GVKRVLKVICGTAKELQRIVLDHLQPAAEIIGFRMGELRGLSRWRARYHGIGLDEMLINN 393
Query: 418 ATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELVVIFL 477
ATE SGM LVQ+ERFMRVLSSV QQFSNFFNWLLKCIKLLMQEPSDQL YNSELVVIFL
Sbjct: 394 ATEKSGMILVQIERFMRVLSSVEQQFSNFFNWLLKCIKLLMQEPSDQLLPYNSELVVIFL 453
Query: 478 KFLYDQDPVRQLLEPSEVDHDVDVDL 503
KFLYDQDPV+QLL EVDHD++VDL
Sbjct: 454 KFLYDQDPVKQLL---EVDHDIEVDL 476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242063296|ref|XP_002452937.1| hypothetical protein SORBIDRAFT_04g035270 [Sorghum bicolor] gi|241932768|gb|EES05913.1| hypothetical protein SORBIDRAFT_04g035270 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/748 (52%), Positives = 530/748 (70%), Gaps = 44/748 (5%)
Query: 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRP 71
FQLQFDKP+ QIK+AEWNPEKDLLAM T+DSK++LHRFNWQRLWTISPGK +TS+CW P
Sbjct: 19 FQLQFDKPIPFQIKLAEWNPEKDLLAMVTDDSKVILHRFNWQRLWTISPGKCITSICWSP 78
Query: 72 DGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEED---AQPSKNDFGNIPTY 128
DGK IA+G EDG + LHDVENGK+LR+ KSH VA+VCLNW ED ++P K++F +Y
Sbjct: 79 DGKIIALGTEDGLVLLHDVENGKMLRTTKSHDVAIVCLNWAEDDPLSRPEKDEF---LSY 135
Query: 129 EDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF 188
EDRT+RFFPPAP +P++ GL SGDTG D++E++ E ++S QRF+ILCSG KDG +CF
Sbjct: 136 EDRTTRFFPPAPVMPRVGGLSSGDTGLADENEEAIPEFFSASCQRFNILCSGGKDGCVCF 195
Query: 189 NIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEE 248
+IFGIFP+GKINI K + + ++ + + +L +AS+ +V+LS++L L +LC G+L +
Sbjct: 196 SIFGIFPVGKINITKIPINVGSSGK--SYQLQDASVSEVSLSRNLQKLVLLCFGKLVDTD 253
Query: 249 LGGH--GMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDAT 306
H G GLHCL LDTSIF RK+EL+QV+ QAS+I+DL EV+R S++++ KQW++A
Sbjct: 254 NLSHSCGSSGLHCLYLDTSIFFNRKNELHQVSQQASSIQDLVEVVRASVSLISKQWSNAM 313
Query: 307 HTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAV 366
FR +F +L LI +G++S+ ++EFLSLL G RTSP +HQFLA+SLGEAG+KR++KAV
Sbjct: 314 GLFRVQFSALPNLISAHGVESTSEDEFLSLLFGTRTSPALHQFLASSLGEAGLKRIAKAV 373
Query: 367 CGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFL 426
AG++++ I+ HLQPA E+I FR+ ELRGL+RWR+RF IGLDEKLI+ TE+ GM +
Sbjct: 374 DSAGRDIRGIITEHLQPAVEMISFRLSELRGLARWRSRFQIIGLDEKLIDGVTESIGMLV 433
Query: 427 VQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELVVIFLKFLYDQDPV 486
VQVERF RV ++VV F NFF W+LK +K+L+ EP+DQ+P NSELVVIFLKFL D+DP+
Sbjct: 434 VQVERFSRVAATVVYLFQNFFAWVLKSVKILLNEPTDQVPAANSELVVIFLKFLLDKDPI 493
Query: 487 RQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQLLESSFKEAFLMP 546
+QLLE E+ ++ D++T + V LV FGGF+D +L ++L+K+F LE S KEAFLMP
Sbjct: 494 KQLLEADEI---IECDMDTARHVEQLVVFGGFTDTQFLEKSLVKQFNELEDSLKEAFLMP 550
Query: 547 FTTISTKILCEDFLPLFPLPSSP--TSVFIPMSVSYYKGISQPHQASDHDFIDYVSFQVP 604
FTTIS++I C+ LPL+P+ SS +S P S+S+YK PH S + DYV F++P
Sbjct: 551 FTTISSQIQCQGLLPLYPVTSSVNLSSSCTPTSISFYKDEDSPHGESSYSLTDYVCFKIP 610
Query: 605 NEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVDLSLYKEGQIVLLLN 664
+ + NCIG+++ + +++ SL LL +P Y CVDLSLYK
Sbjct: 611 DGSLNK-RNCIGVIKDSGNCCTAL--SMASLSGFLLHIPDEYECVDLSLYK--------- 658
Query: 665 EACTSSDSGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVFYLQMGNAKVRIIPHS 724
T + F+ +S + + + L +L L KVR IPH+
Sbjct: 659 -----------------TENFSFMPLSGTFPANIYSLQKLVALDLQLDADYGKVRSIPHT 701
Query: 725 VVAPLAVSASRGVASVYATRKRALVYIL 752
V PLAVSASRGVA V+++R+ ALVYIL
Sbjct: 702 VSTPLAVSASRGVACVFSSRRHALVYIL 729
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302144192|emb|CBI23319.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/529 (72%), Positives = 435/529 (82%), Gaps = 33/529 (6%)
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
G+ +TSLCWRPDGKAIAVGLEDGT++LHDVE L
Sbjct: 11 GRCITSLCWRPDGKAIAVGLEDGTVSLHDVEVSYL------------------------G 46
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
D GNI YEDRTSRFFPPAPR+P+MPGLVSGDTGF DDSEDSF EL+NSSHQRF+ILCSG
Sbjct: 47 DSGNILAYEDRTSRFFPPAPRVPRMPGLVSGDTGFMDDSEDSFGELSNSSHQRFNILCSG 106
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
DKDGSICF+IFGIFPIGKINIH+F V+ D Q T RLLNASI KVALSKDL HL V C
Sbjct: 107 DKDGSICFSIFGIFPIGKINIHEFSVSTLLMDNQVTYRLLNASICKVALSKDLCHLIVTC 166
Query: 241 SGQLSQE-------ELGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
SG+L ++ + GHG+ GLH LVL+TSIF KRK+EL+QVA QASNIEDLTEVIR
Sbjct: 167 SGELVEQSVESRDRHIFGHGLLGLHSLVLNTSIFWKRKNELHQVAQQASNIEDLTEVIRA 226
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VMCKQW+DA H F EKFDSLS+LI+D+GLDSSPQEEFLSLL GARTSPP+HQFL +S
Sbjct: 227 SLSVMCKQWSDAMHMFHEKFDSLSSLIIDHGLDSSPQEEFLSLLCGARTSPPLHQFLVSS 286
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE G+KRVSKAV AGKELQLIVL+HLQPAAEIIGFRMGELRGLSRWR R+ IGLDE+
Sbjct: 287 LGEVGLKRVSKAVSNAGKELQLIVLDHLQPAAEIIGFRMGELRGLSRWRTRYKVIGLDER 346
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
LI+NATE +GM LVQVERFM +LSS VQQFSNFF+WLLKCIKLLM E SDQL +NSELV
Sbjct: 347 LIDNATEKAGMLLVQVERFMMILSSAVQQFSNFFSWLLKCIKLLMSETSDQLLPFNSELV 406
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
+IFL+FLYDQDPVRQLLE SEVDH+++++LETMQ++++LV GGFSD YL+RT+ KEFQ
Sbjct: 407 IIFLRFLYDQDPVRQLLELSEVDHNIEIELETMQKIKELVQLGGFSDSEYLQRTMAKEFQ 466
Query: 534 LLESSFKEAFLMPFTTISTKILCEDFLPLFPLPSSPTSVFIPMSVSYYK 582
+ESSFKEAF MPFTT+S KILCED LP+FP PSSP +V PMS+SYYK
Sbjct: 467 QMESSFKEAFAMPFTTVSEKILCEDLLPMFPCPSSPFNV--PMSISYYK 513
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 763 | ||||||
| TAIR|locus:2119627 | 777 | APC4 "AT4G21530" [Arabidopsis | 0.997 | 0.979 | 0.669 | 5.4e-276 | |
| UNIPROTKB|F1NIB7 | 804 | ANAPC4 "Uncharacterized protei | 0.304 | 0.288 | 0.274 | 6.7e-40 | |
| MGI|MGI:1098673 | 807 | Anapc4 "anaphase promoting com | 0.263 | 0.249 | 0.264 | 8.2e-36 | |
| UNIPROTKB|Q5RAQ5 | 817 | ANAPC4 "Anaphase-promoting com | 0.263 | 0.246 | 0.269 | 1.7e-35 | |
| UNIPROTKB|E2R8L6 | 808 | ANAPC4 "Uncharacterized protei | 0.263 | 0.248 | 0.264 | 2.4e-35 | |
| UNIPROTKB|Q9UJX5 | 808 | ANAPC4 "Anaphase-promoting com | 0.263 | 0.248 | 0.264 | 2.7e-35 | |
| UNIPROTKB|E9PCR4 | 809 | ANAPC4 "Anaphase-promoting com | 0.263 | 0.248 | 0.264 | 2.7e-35 | |
| RGD|1306572 | 807 | Anapc4 "anaphase promoting com | 0.263 | 0.249 | 0.264 | 4.9e-35 | |
| UNIPROTKB|E1B945 | 808 | ANAPC4 "Uncharacterized protei | 0.263 | 0.248 | 0.264 | 5.3e-35 | |
| UNIPROTKB|I3LFB6 | 801 | ANAPC4 "Uncharacterized protei | 0.263 | 0.250 | 0.264 | 9.4e-35 |
| TAIR|locus:2119627 APC4 "AT4G21530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2653 (939.0 bits), Expect = 5.4e-276, P = 5.4e-276
Identities = 517/772 (66%), Positives = 613/772 (79%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP 60
M +DE ++PFQLQFDKP+ QIKIAEWNPEKDLLAM TEDSKILLHRFNWQRLWTISP
Sbjct: 4 MASDEEENIIPFQLQFDKPIPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISP 63
Query: 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120
GK VTSLCWRPDGKAIAVGLEDGTI+LHDVENGKLLR+LK H VAVVCLNWEED Q + +
Sbjct: 64 GKPVTSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRNLKPHDVAVVCLNWEEDGQSNTD 123
Query: 121 DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180
+ GN YEDRTSRFFPPAPR P+MPGLV+GD+ F DD EDS EL+N+S ++F+ILC+G
Sbjct: 124 ESGNFSVYEDRTSRFFPPAPRPPKMPGLVAGDSSFMDDGEDSLAELSNTSFRKFNILCTG 183
Query: 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240
D+DG+ICF+IFGIF IGKINIH+ + +P+ DE +C+L NASIYKVALSKDL L V+C
Sbjct: 184 DRDGNICFSIFGIFQIGKINIHELSLPVPHLDEHASCKLFNASIYKVALSKDLCRLVVMC 243
Query: 241 SGQLS-------QEEXXXXXXXXXXXXXXDTSIFSKRKDELYQVALQASNIEDLTEVIRE 293
+G+L +E+ DTSIF KRK EL+QVA QASNIEDLTEVIR
Sbjct: 244 TGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKYELHQVAQQASNIEDLTEVIRA 303
Query: 294 SLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANS 353
SL+VM KQW DA TF EKF SLSTLI+DNGL+SSPQEEFLSLLGGAR SP ++QFL NS
Sbjct: 304 SLSVMNKQWADAMKTFHEKFHSLSTLIIDNGLESSPQEEFLSLLGGARISPALNQFLVNS 363
Query: 354 LGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEK 413
LGE GVKRV K+VCG GKELQ +VL+HLQPAAEIIGFR+GELRGLSRWRAR+ GIGLDE
Sbjct: 364 LGEVGVKRVLKSVCGTGKELQQVVLDHLQPAAEIIGFRIGELRGLSRWRARYQGIGLDEM 423
Query: 414 LINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQLPRYNSELV 473
L+N ATEN+G+ LVQV+RFM VLSSVVQQFSNFFNWL++ IK LMQEP+DQL YNSEL+
Sbjct: 424 LLNEATENTGLLLVQVQRFMMVLSSVVQQFSNFFNWLVRSIKYLMQEPNDQLLSYNSELL 483
Query: 474 VIFLKFLYDQDPVRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSDCNYLRRTLLKEFQ 533
V+FLKFLYDQDPV+ LLE SE D+++DL+T+ RV++L+ FGGFS+C++L+RTL KEFQ
Sbjct: 484 VVFLKFLYDQDPVKDLLELSEAGDDIEIDLKTIGRVKELLQFGGFSECDFLQRTLAKEFQ 543
Query: 534 LLESSFKEAFLMPFTTISTKILCEDXXXX--XXXXXXXXXXXIPMSVSYYKGISQPHQAS 591
+ESSFK AF MPFTTIS KI C IPMS+S+YK
Sbjct: 544 HMESSFKMAFQMPFTTISRKISCMKLLPLCPLQLSTTQTPTTIPMSLSFYKNELSDDTPC 603
Query: 592 DHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMSSIKKGYTSLEAVLLSVPSGYHCVDL 651
+ DY+SFQVP+E F +I+NCIGI +G+ + ++ K GYTSLEAVLLSVP+GY CVDL
Sbjct: 604 QSGYTDYISFQVPDETFPEISNCIGIAKGYKQNSNNEKNGYTSLEAVLLSVPNGYTCVDL 663
Query: 652 SLYKEGQIVLLLNEACTSSD-SGEACMMIVRTSDLPFVSVSRSPYLDHWELHQLKDSVFY 710
SLYK+ ++VLLLN+ T S+ SGEACMM+V+T DL F+S+S S L+ WEL LK S+
Sbjct: 664 SLYKDKELVLLLNKTNTDSEGSGEACMMVVQTGDLAFISISGSSSLNQWELEDLKGSIVN 723
Query: 711 LQMGNAKVRIIPHSVVAPLAVSASRGVASVYATRKRALVYILEEDEDE-VSD 761
L+M N KVR +PHSV+APLAVSASRGVA V+A R+RALVYILEEDEDE +SD
Sbjct: 724 LEMENEKVRKVPHSVIAPLAVSASRGVACVFAERRRALVYILEEDEDEEISD 775
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| UNIPROTKB|F1NIB7 ANAPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 6.7e-40, Sum P(3) = 6.7e-40
Identities = 67/244 (27%), Positives = 123/244 (50%)
Query: 227 VALSKDLFHLTVLCSGQLSQEEXXXXXXXXXXXXXXDTSIFSKRKDELYQVALQASNIED 286
+ LS DL L+V+ Q S + DTS+ S E+ ++A + ++I
Sbjct: 206 LCLSSDLKSLSVITEIQDSPDSEAEITYFQL-----DTSLLSSYLPEVTRMARKFTHIST 260
Query: 287 LTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIVDNGLDSSPQEEFLSLLGGARTSPP 345
L + I+ SLT MC+ W + + DS L+ + + +S Q+EF+ LL + S
Sbjct: 261 LLQYIKLSLTCMCEAWEEILM----QMDSRLTKFVQEKNTTTSVQDEFMQLLLWGKASLE 316
Query: 346 IHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARF 405
+ L N L G+K++ +++ + +Q +V++HLQ +E + + + EL+G++ W+ ++
Sbjct: 317 LQALLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSEALLYYLSELKGMALWKQKY 376
Query: 406 HGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQL 465
+GLD I AT G F+++ ++V+ S ++ F FF WL + +L L
Sbjct: 377 ESLGLDASGIEEATTAVGSFILKANELLQVIDSSMKNFKAFFRWLY--VAMLRMSEDHVL 434
Query: 466 PRYN 469
P N
Sbjct: 435 PELN 438
|
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| MGI|MGI:1098673 Anapc4 "anaphase promoting complex subunit 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 8.2e-36, Sum P(3) = 8.2e-36
Identities = 55/208 (26%), Positives = 109/208 (52%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKPTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I +A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEDAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
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| UNIPROTKB|Q5RAQ5 ANAPC4 "Anaphase-promoting complex subunit 4" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 56/208 (26%), Positives = 108/208 (51%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKNTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+GL+ W+ ++ +GLD I A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGLASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
|
| UNIPROTKB|E2R8L6 ANAPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 2.4e-35, Sum P(4) = 2.4e-35
Identities = 55/208 (26%), Positives = 109/208 (52%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKSTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I +A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEDAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
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| UNIPROTKB|Q9UJX5 ANAPC4 "Anaphase-promoting complex subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 55/208 (26%), Positives = 108/208 (51%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKNTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
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| UNIPROTKB|E9PCR4 ANAPC4 "Anaphase-promoting complex subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 55/208 (26%), Positives = 108/208 (51%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKNTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
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| RGD|1306572 Anapc4 "anaphase promoting complex subunit 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 4.9e-35, Sum P(4) = 4.9e-35
Identities = 55/208 (26%), Positives = 109/208 (52%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLAEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKTTTTSVQDEFMHLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I +A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDASSIEDAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
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| UNIPROTKB|E1B945 ANAPC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 5.3e-35, Sum P(3) = 5.3e-35
Identities = 55/208 (26%), Positives = 109/208 (52%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKNTTTSVQDEFMDLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I +A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEDAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
|
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| UNIPROTKB|I3LFB6 ANAPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 9.4e-35, Sum P(4) = 9.4e-35
Identities = 55/208 (26%), Positives = 109/208 (52%)
Query: 263 DTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS-LSTLIV 321
+T++ E+ ++A + ++I L + I SLT MC+ W + + DS L+ +
Sbjct: 237 ETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILM----QMDSRLTKFVQ 292
Query: 322 DNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHL 381
+ +S Q+EF+ LL + S + L N L G+K++ +++ + +Q +V++HL
Sbjct: 293 EKNTTTSVQDEFMDLLLWGKASAELQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHL 352
Query: 382 QPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRVLSSVVQ 441
Q +E + + + EL+G++ W+ ++ +GLD I +A G F+++ ++V+ S ++
Sbjct: 353 QSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEDAITAVGSFILKANELLQVIDSSMK 412
Query: 442 QFSNFFNWLLKCIKLLMQEPSDQLPRYN 469
F FF WL + +L LP N
Sbjct: 413 NFKAFFRWLY--VAMLRMTEDHVLPELN 438
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65418 | APC4_ARATH | No assigned EC number | 0.6824 | 0.9855 | 0.9678 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT4G21530 | nucleotide binding; nucleotide binding; FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680); BEST Arabidopsis thaliana protein match is- SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (TAIR-AT4G21540.1); Has 1806 Blast hits to 1423 proteins in 191 species- Archae - 0; Bacteria - 606; Met [...] (777 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | FZR3 | FZR3 (FIZZY-RELATED 3); signal transducer; FIZZY-RELATED 3 (FZR3); FUNCTIONS IN- signal transdu [...] (481 aa) | • | 0.768 | |||||||
 | CDC20.1 | CDC20.1; signal transducer; putative cdc20 protein (CDC20.1) (457 aa) | • | • | 0.768 | ||||||
 | FZR2 | FZR2 (FIZZY-RELATED 2); signal transducer; FIZZY-RELATED 2 (FZR2); FUNCTIONS IN- signal transdu [...] (483 aa) | • | 0.768 | |||||||
 | CCS52A2 | CCS52A2; signal transducer; Encodes a putative activator of the anaphase-promoting complex/cycl [...] (475 aa) | • | 0.768 | |||||||
 | UVI4-LIKE | UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE); Plant specific-protein of unknown function, shares 62% hom [...] (243 aa) | • | 0.768 | |||||||
 | APC8 | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding; anaphase-promoting complex or cyclosome s [...] (579 aa) | • | 0.768 | |||||||
 | AT2G39090 | tetratricopeptide repeat (TPR)-containing protein; tetratricopeptide repeat (TPR)-containing pr [...] (558 aa) | • | 0.768 | |||||||
 | HBT | HBT (HOBBIT); binding; Required for cell division and cell differentiation in meristems. Encode [...] (744 aa) | • | 0.768 | |||||||
 | APC10 | anaphase-promoting complex, subunit 10 family / APC10 family; anaphase-promoting complex, subun [...] (192 aa) | • | 0.768 | |||||||
 | APC2 | APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase; a highly conserved ubiquitin [...] (865 aa) | • | 0.768 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 763 | |||
| pfam12896 | 208 | pfam12896, Apc4, Anaphase-promoting complex, cyclo | 2e-54 | |
| pfam12894 | 47 | pfam12894, Apc4_WD40, Anaphase-promoting complex s | 2e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.002 |
| >gnl|CDD|221838 pfam12896, Apc4, Anaphase-promoting complex, cyclosome, subunit 4 | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 2e-54
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Query: 256 GLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDS 315
L L LD + K K L +A ++S ++ L E I E+L ++ ++W A F K +
Sbjct: 1 QLQLLPLDLTFLQKSKRYLVLLARKSSQLQSLLEYINETLRLIKEEWKPALELFDRKLTN 60
Query: 316 LSTLIVDNGLDSSPQEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQL 375
L+ + D E LL SP + FL N LGE G+KR K+V A + L+
Sbjct: 61 LADELTDQV-GGDLVAELYDLLLTGIISPALKDFLLNQLGERGLKRWEKSVTSAYESLRK 119
Query: 376 IVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIGLDEKLINNATENSGMFLVQVERFMRV 435
+V HL PA E + + ELRGLS+W +GLD + + E+ G L++ + V
Sbjct: 120 LVFEHLIPALERLIVLLSELRGLSKWLKLLESLGLDSEELEELLESLGSLLLKAHELLWV 179
Query: 436 LSSVVQQFSNFFNWLLKCIKLLMQEPSDQ 464
++ ++QF F NWL I L EP Q
Sbjct: 180 INEELKQFKAFLNWLRYEIDRLADEPDSQ 208
|
Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. Results in C.elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. the APC/C is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism. Length = 208 |
| >gnl|CDD|205130 pfam12894, Apc4_WD40, Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-16
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 11 PFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT 57
F L +K + +++KI W P DL+A+ATED ++LLHR NWQR+WT
Sbjct: 1 DFTLLGEKNLPARVKILSWCPTMDLIALATEDGELLLHRLNWQRIWT 47
|
Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilise the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,. Length = 47 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK----------SVTSLCWRPDGKAIAV 78
++P+ +L+ ++ D I ++W + GK V S+ + PDG +A
Sbjct: 101 FSPDGRILSSSSRDKTI--------KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 79 GLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138
+DGTI L D+ GK + +L HT V + + P + + D T + +
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS----PDGEKL--LSSSSDGTIKLW-- 204
Query: 139 APRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF 188
+ G + G E+ +A S +L SG +DG+I
Sbjct: 205 DLSTGKCLGTLRGH-------ENGVNSVAFSPDGY--LLASGSEDGTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK----------SVTSLCWRPDGKAIAV 78
++P+ + L ++ D I +LW +S GK V S+ + PDG +A
Sbjct: 185 FSPDGEKLLSSSSDGTI--------KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 79 GLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
G EDGTI + D+ G+ +++L HT +V L W D +
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLC----------WRPDGKAIAV 78
++P+ LLA + D I ++W + G+ + +L DG +A
Sbjct: 17 FSPDGKLLATGSGDGTI--------KVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 79 GLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
G D TI L D+E G+ +R+L HT V + + D +
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111
VT + + PDGK +A G DGTI + D+E G+LLR+LK HT V +
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK----------SVTSLCWRPDGKAIAV 78
+ + LA + D I RLW + G+ V+S+ + PDG+ ++
Sbjct: 59 ASADGTYLASGSSDKTI--------RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110
Query: 79 GLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
D TI + DVE GK L +L+ HT V + + D
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (112), Expect = 2e-05
Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 13/214 (6%)
Query: 26 IAEWNPEKDLLAMATEDSKILLH--RFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLED 82
++ ++P+ LLA + D I L R + L T+ SV S+ + PDGK +A G D
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 83 GTITLHDVENGKL--LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140
GT+ L D+E GKL +LK H V L++ D +D T R +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD-----GSLLVSGGSDDGTIRLWDLRT 360
Query: 141 RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKIN 200
P + S D +++ S L + + ++
Sbjct: 361 GKPLKTLEGHSNVLSVSFSPDGRV-VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLD 419
Query: 201 IHKFHVAIPNADEQGTCRLLNAS--IYKVALSKD 232
++ + T RL + + V+ S D
Sbjct: 420 FSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 2e-04
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 25 KIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----PGKSVTSLCWRPDGKAIAVG 79
K+A +P+ + + +A+ + ++ + +SVTSL + PDGK +A G
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 80 -LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQP---SKNDFGNIPTYEDRTS 133
DGTI L D+ GK L +L HT V L + D S + G I ++ T
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPG--KSVTSLCWRPDGKAIAVGLEDGTI 85
++P+ LLA +ED I + G SVTSL W PDGK +A G DGTI
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 22 SQIKIAEWNPEKDLLAMA-TEDSKILLHRFNWQR-LWTISPGKSVTSLCWRPDGKAIAVG 79
+ ++P+ LL ++D I L + L T+ +V S+ + PDG+ ++ G
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQP--SKNDFGNIPTYEDRTSRF 135
DGT+ L D+ G LLR+L HT V L++ D + S + I ++ +TS
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 763 | |||
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 100.0 | |
| PF12896 | 210 | Apc4: Anaphase-promoting complex, cyclosome, subun | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.91 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.89 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.87 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.84 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.83 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.83 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.81 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.8 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.8 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.79 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.79 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.77 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.76 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.76 | |
| PTZ00421 | 493 | coronin; Provisional | 99.76 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.75 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.75 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.75 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.74 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.74 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.74 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.74 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.74 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.73 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.72 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.71 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.71 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.69 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.69 | |
| PTZ00420 | 568 | coronin; Provisional | 99.68 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.68 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.67 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.67 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.67 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.67 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.66 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.66 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.65 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.65 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.65 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.64 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.64 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.63 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.62 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.62 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.61 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.6 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.6 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.6 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.59 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.59 | |
| PTZ00421 | 493 | coronin; Provisional | 99.59 | |
| PTZ00420 | 568 | coronin; Provisional | 99.58 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.58 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.57 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.57 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.56 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.55 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.54 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.54 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.53 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.53 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.53 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.52 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.52 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.51 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.47 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.47 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.47 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.47 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.46 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.45 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.45 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.44 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.44 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.44 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.44 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.43 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.43 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.43 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.43 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.42 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.42 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.41 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.38 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.38 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.38 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.37 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.37 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.36 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.35 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.34 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.33 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.32 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.32 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.31 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.31 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.3 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.3 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.28 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.28 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.28 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.28 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.28 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.28 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.27 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.26 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.25 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.25 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.24 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.24 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.23 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.23 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.23 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.21 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.2 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.2 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.19 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.19 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.17 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.16 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.16 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.16 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.15 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.12 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.12 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.11 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.11 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.07 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.05 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.05 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.05 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.03 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.03 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.03 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.02 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.02 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.02 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.0 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.99 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.97 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.94 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.92 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 98.91 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.87 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.87 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.85 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 98.81 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 98.81 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.81 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.76 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.76 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.75 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.73 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.72 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.7 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.67 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.67 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.65 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.65 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.64 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.62 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.6 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.56 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.5 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.49 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.49 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.49 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.47 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.46 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.46 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.46 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.41 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.4 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.38 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.36 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.35 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.34 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.33 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.32 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.29 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.26 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.26 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.25 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.24 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.22 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.19 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.18 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.16 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.13 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.1 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.09 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.06 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.01 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.01 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.0 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.0 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.99 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.98 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.98 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.95 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.92 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.91 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.89 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.86 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.86 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.85 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.79 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.77 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.75 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.69 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.67 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.66 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.63 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.47 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.45 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.41 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.35 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.33 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.29 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.26 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.19 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.18 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.18 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.16 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.15 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.07 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.02 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.87 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.83 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.83 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 96.66 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.62 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.6 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.58 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.55 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.53 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.47 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 96.46 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.43 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.39 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.39 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.36 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.31 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.28 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.21 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.17 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.07 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.05 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.96 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.82 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.79 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.71 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.64 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.56 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.53 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.53 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.49 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.41 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 95.15 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.02 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.99 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.96 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 94.91 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.87 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.73 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.53 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.45 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.39 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.13 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 94.1 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.56 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 93.54 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 93.03 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 93.03 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.83 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.8 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.43 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.92 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 91.82 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 91.71 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 91.56 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 91.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.23 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 91.16 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.96 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 90.07 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 89.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.34 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 89.24 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 89.23 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 88.88 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.43 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 87.98 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 87.81 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.76 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.03 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 85.18 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 84.64 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 84.48 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 84.42 | |
| PRK10115 | 686 | protease 2; Provisional | 84.06 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 83.52 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 82.81 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 82.52 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 82.09 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.42 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 81.21 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 80.98 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 80.37 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 80.29 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 80.04 |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=518.73 Aligned_cols=602 Identities=25% Similarity=0.293 Sum_probs=444.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEE-EEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVT-SLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~-~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
....+|..|.-+.|||.++++|+++.+|.|.++|++|||+|+++ |+..++ +++|+|||+.||+|..||+|+|.|+++|
T Consensus 15 ~~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 15 GVMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred hhhccccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44567788999999999999999999999999999999999999 998888 9999999999999999999999999999
Q ss_pred eEEEEe-cccCCceeEEEeecCCCceeccC-CCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec-cc
Q 004298 94 KLLRSL-KSHTVAVVCLNWEEDAQPSKNDF-GNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN-SS 170 (763)
Q Consensus 94 ~~~~~l-~~h~~~V~~l~ws~~~~~l~s~s-~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~-~~ 170 (763)
..++.. ......|+++.|.+.-...-..- +......|..-++++..+...+ ....++..-.......... ..
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~~~v~~e~n~~d~~~na~del~rll~~L~t~~r-----n~~~~sk~~sq~~~pk~~~l~~ 169 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDRIEVRVEENNRDFACNAIDELPRLLPKLPTSKR-----NIVPCSKIFSQFRGPKIDDLDS 169 (665)
T ss_pred CceeccccccccchheeecccceeeccccccchhhhhHhHHHHHhccCCCCcc-----cCCcccchhhhhhCCccccccc
Confidence 988872 23367899999974211100000 0001112222334433332111 1111111000111111111 11
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccC
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELG 250 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~ 250 (763)
+-..++++.+++-|...+..+..+.++...--..+.. -.. .+. -.-.|+.+.++.+.++
T Consensus 170 n~kl~Vlm~~ge~g~~~I~~~~~~~i~~~~~i~~~~~------~~~------~~s--~~k~d~~~~~~~~~g~------- 228 (665)
T KOG4640|consen 170 NLKLDVLMVFGERGNDKITAFFNGKIAVFLSILHILN------EDV------LIS--IIKVDGFYQVAYEDGG------- 228 (665)
T ss_pred cceeEEEEeeccccceEeeeccccchhhhccccchhh------ccc------hhh--hhhccceeEEEeccCC-------
Confidence 2334788888888999999877777665431110000 000 011 1112555555554433
Q ss_pred CCCCCcEEEEEeeccccccCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhCCC-CCCh
Q 004298 251 GHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDSLSTLIVDNGL-DSSP 329 (763)
Q Consensus 251 ~~~~~~l~~~~ld~~~l~~~~~~l~~la~~~s~i~~ll~~~~~~~~~m~~~W~~~~~~~~~~l~~~~~~l~~~~~-~~~~ 329 (763)
..+.+..+-.+.+.........+|.+.++|+.|.+|+..++.||.++|+++...+++++..+. ++. -+++
T Consensus 229 ----~e~l~~~l~~~LL~~~l~~~~~lat~~t~i~~L~~Yi~d~l~cm~e~~e~vfl~~~s~l~~~~-----~~~t~~~l 299 (665)
T KOG4640|consen 229 ----VETLLKTLLGPLLQSDLKSSVNLATYITHIKELIGYINDHLECMYEEWETVFLDMDSRLTDEA-----YLYTFGSL 299 (665)
T ss_pred ----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh-----hcccchhH
Confidence 234444566778888888999999999999999999999999999999999999999987653 333 3689
Q ss_pred HHHHHHhhhcccCChhHHHHHHhhhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhccccccccccccC
Q 004298 330 QEEFLSLLGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWRARFHGIG 409 (763)
Q Consensus 330 ~~~l~~ll~tG~~s~~l~~fL~~~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~~~~~~lg 409 (763)
+.+|.+|.++|.+|-.+++||.++++|||+|||+++|+.+|.+++++|.+||+||+||++|+|++|||+|+|.+.|+.+|
T Consensus 300 q~e~~~L~l~G~~S~~lee~l~~~v~~kg~Kr~~~sv~~Sysslqqlv~~~l~pA~E~i~~~l~elrG~s~w~~~~~~l~ 379 (665)
T KOG4640|consen 300 QSELEALFLFGEASCELEEWLCESVGEKGFKRWKYSVCESYSSLQQLVTLHLQPACERIIYYLSELRGISRWIHNKESLG 379 (665)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCC----ChHHHHHHHHhhcCCC
Q 004298 410 LDEKLINNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQ-EPSDQLPRY----NSELVVIFLKFLYDQD 484 (763)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~~-e~~~~~~~~----d~~~v~~fl~~~~~~~ 484 (763)
||+..+++|++++|.|+++++++++++.++.++|++||+||.+.|.++++ ||..+.+.. +..+|++|....+.++
T Consensus 380 lD~~lveeal~a~G~ll~kv~~~l~~L~s~~k~fk~Ff~Wl~~ai~~l~~ed~~l~~~~~i~e~~~~~l~~~~~~~~~~~ 459 (665)
T KOG4640|consen 380 LDATLVEEALKASGKLLLKVLEFLIVLDSDEKLFKKFFIWLNDAILELLDEDPVLKELFEIDEYDGYFLLEYFDRDFSKK 459 (665)
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhHHHHhHHHHHHhhhchhhc
Confidence 99999999999999999999999999999999999999999999999994 555444443 5556777766666544
Q ss_pred h--------------hhhccCCCCCCCccccchhHHHHHHHhhhcCCCCC---hhhhhHhHHHHHHHHHHHHHHHhcCch
Q 004298 485 P--------------VRQLLEPSEVDHDVDVDLETMQRVRDLVNFGGFSD---CNYLRRTLLKEFQLLESSFKEAFLMPF 547 (763)
Q Consensus 485 ~--------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~l~~~~~~~f~~~~ 547 (763)
+ ++||+++...+.+.+.+. .+.|-+-+....+.+. +..+..+|+.+...+...+..++++|.
T Consensus 460 ~~e~~~~~~~~~l~~v~qyl~d~~~d~~~p~~~-~~~~~~~v~~~~~l~~~~lp~s~~~sl~~~k~~~~n~id~~~~k~~ 538 (665)
T KOG4640|consen 460 LTELSSIGDVFNLRDVGQYLSDMEKDIAQPNVN-HIQWHILVDLKTDLFAQKLPSSQINSLDAIKLPMHNYIDYLIQKPK 538 (665)
T ss_pred cchhhhcCCccchhhhhhhhhhhhhhccCCCCC-chhHHHHhhhhhhhhcCcCCcchhhhHHHHhcchhhHHHHHhhcch
Confidence 3 999999887776666664 4444333322222221 355688999999999999999999999
Q ss_pred hhhcccceeccccCCCCCCCCCC-CcccccccccccccCCCCCCCCCCcceEEEEecCCCCCcCCcceEEEEeccccCCC
Q 004298 548 TTISTKILCEDFLPLFPLPSSPT-SVFIPMSVSYYKGISQPHQASDHDFIDYVSFQVPNEPFSDIANCIGILRGFMHDMS 626 (763)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~~~~~~ 626 (763)
..|++.-....+.++.+...+.. .-+..+.-++|+++ ..+.+|.++++.. +.-+|+|.......
T Consensus 539 ~~i~ke~~~~~~~~l~~~~~~ed~~~r~l~~~t~~~~~--------a~~~~~~~~ti~~-------~~~~il~~~~~~~~ 603 (665)
T KOG4640|consen 539 HNIAKEPFSEICKKLLYIGTLEDENLRIISKESSVKNP--------ASFKSYLLSTIRF-------VVHSILRDIGLSDS 603 (665)
T ss_pred hhcccCcchhhhccccCCCCcchhhhhhhhccceeccc--------cchhhhhhHHhhc-------chhheeeccccccc
Confidence 99998888888889888777663 33455555779986 7788999988863 26677887555555
Q ss_pred ccccCcccc---eEEEEEecCC--eeEeeeeeeccCeEEEEeecccc
Q 004298 627 SIKKGYTSL---EAVLLSVPSG--YHCVDLSLYKEGQIVLLLNEACT 668 (763)
Q Consensus 627 ~~~~~~~~~---~~~~l~~~~~--~~~~d~~~y~d~~l~~l~~~~~~ 668 (763)
+.+.+..-. +-+...-+++ ++++|.+||+|+.+.++.+...+
T Consensus 604 n~~s~~It~~~ge~~~~~ee~~~~~~~~d~q~~nd~~~ai~~k~~v~ 650 (665)
T KOG4640|consen 604 NVHSSHITDYRGEFTENEEEDGTIPAYIDEQFYNDDFIACTAKVSVD 650 (665)
T ss_pred cccceeeeeccccceeeehhhchhHHHHHHhhcccchheeeeecccC
Confidence 555322100 1111111111 78999999999999999988544
|
|
| >PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=353.49 Aligned_cols=208 Identities=37% Similarity=0.633 Sum_probs=202.4
Q ss_pred EEEEEeeccccccCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhCCCCCChHHHHHHh
Q 004298 257 LHCLVLDTSIFSKRKDELYQVALQASNIEDLTEVIRESLTVMCKQWTDATHTFREKFDSLSTLIVDNGLDSSPQEEFLSL 336 (763)
Q Consensus 257 l~~~~ld~~~l~~~~~~l~~la~~~s~i~~ll~~~~~~~~~m~~~W~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~l 336 (763)
++++++|++++..++++++.+|.++++++.+++|+++++.+|.++|++++..+++||.++.+.+.+++.+.++.++|+++
T Consensus 2 l~~~~~d~~~l~~~~~~l~~la~~~~~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~~~~~~~~~el~~l 81 (210)
T PF12896_consen 2 LHLLTLDLTFLSSSSRELVELARKSSQIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEKGGEGSLQDELLDL 81 (210)
T ss_pred eeEEEEeCchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999998888889999999999
Q ss_pred hhcccCChhHHHHHHhhhchhhHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHHHHhhhcccccc-ccccccCCCHHHH
Q 004298 337 LGGARTSPPIHQFLANSLGEAGVKRVSKAVCGAGKELQLIVLNHLQPAAEIIGFRMGELRGLSRWR-ARFHGIGLDEKLI 415 (763)
Q Consensus 337 l~tG~~s~~l~~fL~~~l~erglKr~~k~v~~~~~~i~~l~~~~l~pa~er~~~~l~~L~Gla~~~-~~~~~lgl~~~~~ 415 (763)
|+||+++|++++||+|+|||||+|||+|+++++|++++++++++|+||+|||+++|++|+|+++|+ .+++.+||+++.+
T Consensus 82 LltG~~s~~l~~fL~~~l~erglKr~~k~~~~~y~~i~~l~~~~l~pa~erl~~~l~~L~Gl~~~~~~~~~~lgl~~~~~ 161 (210)
T PF12896_consen 82 LLTGHASPALKQFLVNQLGERGLKRWEKAVDSAYSSIRKLLFEHLIPALERLIVLLSELRGLSRWSQDRFSGLGLDESQL 161 (210)
T ss_pred HHhcCCCHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 4777899999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 004298 416 NNATENSGMFLVQVERFMRVLSSVVQQFSNFFNWLLKCIKLLMQEPSDQ 464 (763)
Q Consensus 416 ~~~~~~~~~~~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~l~~e~~~~ 464 (763)
++|++.++++++++++++++|+++.++|++||+||+.+|+++++||.+|
T Consensus 162 ~~~~~~~~~l~~~~~~l~~~i~~~~~~f~~F~~WL~~~i~~~~~e~~~~ 210 (210)
T PF12896_consen 162 EELLDAAQSLLLKAHELLQVINRELKQFKAFFSWLRYVIDRLADEPSSQ 210 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999987654
|
The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=212.71 Aligned_cols=214 Identities=21% Similarity=0.262 Sum_probs=164.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE-EE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL-RS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~-~~ 98 (763)
..|.+++|+|+|..||+|+.|.++++|++ +..++++.+ |...|.|++|+|||+.||+|+.||+|++||.++|+.+ +.
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 45999999999999999999999999999 556777776 8899999999999999999999999999999988765 66
Q ss_pred ecccCCceeEEEeec-----CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 99 LKSHTVAVVCLNWEE-----DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 99 l~~h~~~V~~l~ws~-----~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+++|...|++++|.| .++.+++++ .|+++++||.... ......++|+..+ .++. + ..
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~s------kDg~vrIWd~~~~--~~~~~lsgHT~~V-------TCvr--w-GG 257 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSS------KDGSVRIWDTKLG--TCVRTLSGHTASV-------TCVR--W-GG 257 (480)
T ss_pred ccCcccceeEEeecccccCCCccceeccc------CCCCEEEEEccCc--eEEEEeccCccce-------EEEE--E-cC
Confidence 999999999999987 357888888 8999999998752 2222334555544 2222 2 33
Q ss_pred eeEEEEEcCCCcEEEEEcCc------e------------------eeeeeeecccc-----------------------c
Q 004298 174 FSILCSGDKDGSICFNIFGI------F------------------PIGKINIHKFH-----------------------V 206 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~------~------------------~ig~~~i~~~~-----------------------~ 206 (763)
..+|.+|+.|++|++|.... + ..|.++-.... .
T Consensus 258 ~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 258 EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 46999999999999995322 0 11111111110 0
Q ss_pred ccccCCCCCceeeec---------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 207 AIPNADEQGTCRLLN---------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 207 ~~~s~~~~~~~~l~~---------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
...+++.+.++.+|+ .-|.++.||||+++++.++-|+ .+.++..++.
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk------------SVkLW~g~tG 399 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK------------SVKLWDGRTG 399 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc------------ceeeeeCCCc
Confidence 123677888888997 3488999999999999998876 6677766553
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=203.74 Aligned_cols=236 Identities=21% Similarity=0.264 Sum_probs=165.6
Q ss_pred ccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc-----CCCEEEEE
Q 004298 8 RVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP-----DGKAIAVG 79 (763)
Q Consensus 8 ~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp-----DG~~Lasg 79 (763)
++..|+....++ .|.+++|+|||..||+|+.||+|.+|+. +|+.+-..- |.+.|++++|.| .+++||++
T Consensus 147 eTp~~t~KgH~~---WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~ 223 (480)
T KOG0271|consen 147 ETPLFTCKGHKN---WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS 223 (480)
T ss_pred CCcceeecCCcc---EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc
Confidence 344555544444 7999999999999999999999999998 666665543 778999999986 67899999
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCccccc
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTD 157 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~ 157 (763)
+.||+|+|||+.-+.++..+.+|+.+|+|+.|..+| +++++| .|++|++|+.... ...+.+|........-
T Consensus 224 skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS------~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS------QDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred cCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC------CCceEEEEEccchhHHHhhcccchheeeeec
Confidence 999999999999999999999999999999998665 678888 8999999987752 2333333222111110
Q ss_pred C------------Cccccc-----------ceecccCCCeeEEEEEcCCCcEEEEEcCc--eeeeeeeeccc--------
Q 004298 158 D------------SEDSFR-----------ELANSSHQRFSILCSGDKDGSICFNIFGI--FPIGKINIHKF-------- 204 (763)
Q Consensus 158 ~------------~~~~~~-----------~~~~~~~~~~~~L~sgs~DG~I~lw~~~~--~~ig~~~i~~~-------- 204 (763)
. ...... .......+.+..|++|+.|+++.+|.-.. .++.+..-|+.
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 0 000100 01111223456899999999999995221 12222211111
Q ss_pred --ccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 205 --HVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 205 --~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.--+.+++-|+++++|+ ++|++++||.|.+.|+.++.|. +++++.+.+.
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs------------TLKvw~V~tk 441 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS------------TLKVWDVRTK 441 (480)
T ss_pred CCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCc------------eEEEEEeeee
Confidence 11234778899999998 5799999999966555555444 6666665543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-22 Score=204.06 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=167.3
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEccC-ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPE--KDLLAMATEDSKILLHRFNW-QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~-~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|.++.|+|. +.-+|+|+.||+|++|.+++ ..+-.+. |..+|..++|+|+|++|++++-|.+-++||++++..+.
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 45999999997 45899999999999999965 5666665 78899999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
...+|...|.+++|.+||..+++|+ .|...++||+++....+ ...+|...+ +...++|+|-.|
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGG------lD~~~RvWDlRtgr~im--~L~gH~k~I---------~~V~fsPNGy~l 360 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGG------LDSLGRVWDLRTGRCIM--FLAGHIKEI---------LSVAFSPNGYHL 360 (459)
T ss_pred hhcccccccceeEecCCCceeeccC------ccchhheeecccCcEEE--Eecccccce---------eeEeECCCceEE
Confidence 9999999999999999999999999 89999999999743332 223444433 456678999999
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeecccc-----c------ccccCCCCCceeeec--------------cceeeEEecC
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKFH-----V------AIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~~-----~------~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
++|+.|++++||+.+.- ....++.|... . -..+++.|.++++|. +.|.++..|+
T Consensus 361 ATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 361 ATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred eecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc
Confidence 99999999999997764 23333333221 1 124778899999987 4688999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
|+..++.++.|.
T Consensus 441 d~~~i~t~s~DR 452 (459)
T KOG0272|consen 441 DSQAIATSSFDR 452 (459)
T ss_pred CCceEEEeccCc
Confidence 999888887664
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=205.87 Aligned_cols=191 Identities=21% Similarity=0.278 Sum_probs=160.3
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
..|..| |..+.|+|+.++|++++.|++|++|.+ ++..+...+ |..+|..+.|+|-|-+||+|+.|++-++|...
T Consensus 448 ~GH~GP----Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 448 YGHSGP----VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred ecCCCc----eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 346666 999999999999999999999999999 666666665 77899999999999999999999999999999
Q ss_pred CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+.++.+.+|.+.|.|+.|+|+..++++|| .|+++|+||..+... ...+.||.+.+ ....++
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS------sD~tVRlWDv~~G~~--VRiF~GH~~~V---------~al~~S 586 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGS------SDRTVRLWDVSTGNS--VRIFTGHKGPV---------TALAFS 586 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCC------CCceEEEEEcCCCcE--EEEecCCCCce---------EEEEEc
Confidence 9999999999999999999999999999999 899999999987422 23345666655 345567
Q ss_pred CCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 172 QRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.+|++|+.||.|.+|+++.- .+..+ +-+.+.|.+++||.||..|++++.|.
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l------------------~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQL------------------KGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhh------------------hcccCceeEEEEecCCCEEEecCCCC
Confidence 89999999999999999997652 22222 12234688999999999999887765
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=189.42 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=165.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|..+.||++++.||+|+.+|.++||.. +.+.+.++. |...|.++.|+|. +..+|+|+.||+|++|++++...+..+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh
Confidence 999999999999999999999999998 666676665 8899999999995 679999999999999999998999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|..++|+|+|+++.+++ .|.+-++||+.++..-+. ..||..-+ +..+++++|.++++
T Consensus 258 ~gH~~RVs~VafHPsG~~L~Tas------fD~tWRlWD~~tk~ElL~--QEGHs~~v---------~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTAS------FDSTWRLWDLETKSELLL--QEGHSKGV---------FSIAFQPDGSLAAT 320 (459)
T ss_pred hcchhhheeeeecCCCceeeecc------cccchhhcccccchhhHh--hccccccc---------ceeEecCCCceeec
Confidence 99999999999999999999999 899999999998632222 12333222 33457789999999
Q ss_pred EcCCCcEEEEEcCce-----------eeeeeeecccccccccCCCCCceeeec--------------cceeeEEecCC-C
Q 004298 180 GDKDGSICFNIFGIF-----------PIGKINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKD-L 233 (763)
Q Consensus 180 gs~DG~I~lw~~~~~-----------~ig~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD-g 233 (763)
|+-|..-++|+.+.- ++-.+.....-.+..+++.|+++++|+ .-|++|+|+|+ |
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 999999999987652 233334444455667999999999998 34788999994 5
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
.+|+.++.|.
T Consensus 401 ~fL~TasyD~ 410 (459)
T KOG0272|consen 401 YFLVTASYDN 410 (459)
T ss_pred eEEEEcccCc
Confidence 5555555554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=174.00 Aligned_cols=203 Identities=16% Similarity=0.132 Sum_probs=153.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|..+..+++|++..+++.|+.+++|++ .|+....+. |+.-|.+++|+||.+.|++|+.|.+|++|++- |.+..++.
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 4999999999999999999999999999 556555554 88999999999999999999999999999987 56666655
Q ss_pred cc--CCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 101 SH--TVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 101 ~h--~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+ .+.|+|+.|+|+ ...+++++ +|+++++||..+. ++....-++++.. .....++++.+
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s------~DktvKvWnl~~~--~l~~~~~gh~~~v---------~t~~vSpDGsl 206 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSAS------WDKTVKVWNLRNC--QLRTTFIGHSGYV---------NTVTVSPDGSL 206 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEcc------CCceEEEEccCCc--chhhccccccccE---------EEEEECCCCCE
Confidence 43 689999999998 67889998 9999999999873 2223333455444 23456799999
Q ss_pred EEEEcCCCcEEEEEcCceee-----eeeeeccccccc----ccCCCCCceeeec-----------------------cce
Q 004298 177 LCSGDKDGSICFNIFGIFPI-----GKINIHKFHVAI----PNADEQGTCRLLN-----------------------ASI 224 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~i-----g~~~i~~~~~~~----~s~~~~~~~~l~~-----------------------~~I 224 (763)
.++|+.||.+.+|+...-.. +...++.....+ .......++++|+ ..+
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 99999999999998654221 011111111110 1223445688887 125
Q ss_pred eeEEecCCCCEEEEEeecC
Q 004298 225 YKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 225 ~~v~~SpDg~~Llv~~~d~ 243 (763)
.+++||+||..|+.+-+++
T Consensus 287 lslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred EEEEEcCCCcEEEeeecCC
Confidence 6789999999999987766
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=169.12 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=124.9
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-
Q 004298 21 ASQIKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN- 92 (763)
Q Consensus 21 ~~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~- 92 (763)
+++|..++|+|. |.+||+++.|..|++|...+..-|... |.+.|++++|+|.|++||+|+-|.++.||.=+.
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 347999999998 899999999999999999754446554 788999999999999999999999999998664
Q ss_pred -CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceeccc
Q 004298 93 -GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 93 -g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.+++.++.+|.+.|.|++|+++|.++++++ .|+.+=+|..... -....+...+|+.- ++. ..+
T Consensus 94 efecv~~lEGHEnEVK~Vaws~sG~~LATCS------RDKSVWiWe~deddEfec~aVL~~HtqD-------VK~--V~W 158 (312)
T KOG0645|consen 94 EFECVATLEGHENEVKCVAWSASGNYLATCS------RDKSVWIWEIDEDDEFECIAVLQEHTQD-------VKH--VIW 158 (312)
T ss_pred ceeEEeeeeccccceeEEEEcCCCCEEEEee------CCCeEEEEEecCCCcEEEEeeecccccc-------ccE--EEE
Confidence 478899999999999999999999999999 9999999976631 00000111122211 111 235
Q ss_pred CCCeeEEEEEcCCCcEEEEEc
Q 004298 171 HQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~ 191 (763)
+|...+|++++.|.+|++|..
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred cCCcceeEEeccCCeEEEEee
Confidence 688889999999999999963
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=182.80 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=159.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+|++++|+.+|++||+|+.||.+++|+.+|..+.++. |.++|.++.|+.+|.+|++|+-||++.+||..+|.....+.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 57999999999999999999999999999999998886 88999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
-|..+-..+.|..+..+. +++ .|+.++++.+..+.+. ....+|.+-+ ..+ .+++.+.+|+++
T Consensus 316 ~~s~~~lDVdW~~~~~F~-ts~------td~~i~V~kv~~~~P~--~t~~GH~g~V-------~al--k~n~tg~LLaS~ 377 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFA-TSS------TDGCIHVCKVGEDRPV--KTFIGHHGEV-------NAL--KWNPTGSLLASC 377 (524)
T ss_pred eccCCccceEEecCceEe-ecC------CCceEEEEEecCCCcc--eeeecccCce-------EEE--EECCCCceEEEe
Confidence 998887889999876654 444 6899999866543222 2233444433 223 356888999999
Q ss_pred cCCCcEEEEEcCce-eeeeeeecc-------------c------ccccccCCCCCceeeec--------------cceee
Q 004298 181 DKDGSICFNIFGIF-PIGKINIHK-------------F------HVAIPNADEQGTCRLLN--------------ASIYK 226 (763)
Q Consensus 181 s~DG~I~lw~~~~~-~ig~~~i~~-------------~------~~~~~s~~~~~~~~l~~--------------~~I~~ 226 (763)
+.|+++++|..+.- ..+.+..|. . .....+++.+.++++|+ .+|++
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 99999999953211 111111111 0 11234667888999998 48999
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
++|||||++++.+..|+
T Consensus 458 vafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDG 474 (524)
T ss_pred EEecCCCcEEEecCCCC
Confidence 99999999999988776
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=178.66 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=153.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.+.|..|||||+++++|+.||.|-||+. +|+.-..++ +...|.|++|+.|..++|+|+.||.|++|.+++
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 3889999999999999999999999998 454333332 457899999999999999999999999999999
Q ss_pred CeEEEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
|.+++.+. .|...|+|+.|+.|+..+.+++ .|.++|+--... .++.....||.++++ ...+.
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s------fD~tvRiHGlKS--GK~LKEfrGHsSyvn---------~a~ft 357 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSAS------FDQTVRIHGLKS--GKCLKEFRGHSSYVN---------EATFT 357 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhccc------ccceEEEecccc--chhHHHhcCcccccc---------ceEEc
Confidence 99999987 8999999999999999999998 899999987654 233334556766662 22356
Q ss_pred CCeeEEEEEcCCCcEEEEEcCc------ee-------eee-eeecccccccccCCCCCceeeec----------------
Q 004298 172 QRFSILCSGDKDGSICFNIFGI------FP-------IGK-INIHKFHVAIPNADEQGTCRLLN---------------- 221 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~------~~-------ig~-~~i~~~~~~~~s~~~~~~~~l~~---------------- 221 (763)
++++.+++++.||+|++|.... |. +.+ +.+...+.++..+....++-+-+
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 8889999999999999995332 21 111 12223333333222222222211
Q ss_pred cceeeEEecCCCCEEEEEeecC
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+...++++||.|..++.+++|+
T Consensus 438 GdFi~~~lSpkGewiYcigED~ 459 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDG 459 (508)
T ss_pred CceEEEEecCCCcEEEEEccCc
Confidence 3345678999999999999887
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=166.97 Aligned_cols=204 Identities=14% Similarity=0.197 Sum_probs=152.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC---CeEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN---GKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~---g~~~ 96 (763)
|..++|+|.|++||+++.|.++.||.-. .+.+-.+. |..+|.|++|+++|.+||+++.|+.|.||.+.. -+++
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 9999999999999999999999999983 34555554 888999999999999999999999999999874 3577
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC-CCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP-RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~-~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
..+..|...|..+.|+|...+++++| .|.+|++|...+ .--.+.....++...+ ....+++.++
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~S------YDnTIk~~~~~~dddW~c~~tl~g~~~TV---------W~~~F~~~G~ 208 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCS------YDNTIKVYRDEDDDDWECVQTLDGHENTV---------WSLAFDNIGS 208 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEec------cCCeEEEEeecCCCCeeEEEEecCccceE---------EEEEecCCCc
Confidence 88999999999999999999999999 899999997652 1111122223333222 3345678889
Q ss_pred EEEEEcCCCcEEEEE--cCceeeeeeeecccc---cccccCCCCCceeeec---------------------cceeeEEe
Q 004298 176 ILCSGDKDGSICFNI--FGIFPIGKINIHKFH---VAIPNADEQGTCRLLN---------------------ASIYKVAL 229 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~--~~~~~ig~~~i~~~~---~~~~s~~~~~~~~l~~---------------------~~I~~v~~ 229 (763)
.|++++.|+++++|. .+....++-.+-..+ ..+.+++.+..++++. ..|.+++|
T Consensus 209 rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 999999999999997 333333322222222 2345777777777753 35889999
Q ss_pred cCCCCEEEEEeec
Q 004298 230 SKDLFHLTVLCSG 242 (763)
Q Consensus 230 SpDg~~Llv~~~d 242 (763)
.|.+..+++.+.|
T Consensus 289 ~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 289 NPKVSNRLASGGD 301 (312)
T ss_pred cCCCCCceeecCC
Confidence 9965555555443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=165.85 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|..+.|+-+|++..+++.|.+|++|+. .|..+.+.. ||.+|..++-+.|...||+|+.|..|.+||+++|+.++++
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 45999999999999999999999999998 788888887 9999999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
++|.+.|+.+.|+.+...+++|+ .|.++++||.+............. .+.+..+ .-....+++
T Consensus 98 rgH~aqVNtV~fNeesSVv~Sgs------fD~s~r~wDCRS~s~ePiQildea-------~D~V~Si----~v~~heIva 160 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGS------FDSSVRLWDCRSRSFEPIQILDEA-------KDGVSSI----DVAEHEIVA 160 (307)
T ss_pred ccccceeeEEEecCcceEEEecc------ccceeEEEEcccCCCCccchhhhh-------cCceeEE----EecccEEEe
Confidence 99999999999999999999999 899999999987432221111110 1111111 223457899
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+.||+++.|+++ .|+... .. ...+|++++||+||+..++.+-++
T Consensus 161 GS~DGtvRtydiR---~G~l~s----------Dy------~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 161 GSVDGTVRTYDIR---KGTLSS----------DY------FGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred eccCCcEEEEEee---cceeeh----------hh------cCCcceeEEecCCCCEEEEeeccc
Confidence 9999999999843 444311 00 124799999999999999998776
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=183.34 Aligned_cols=207 Identities=16% Similarity=0.223 Sum_probs=164.8
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
|+.+ |.++.|++++..+++|+.+|.|++|..+.+.+..+. |...|++++|+|+...|+++++||+|+|||....
T Consensus 137 HDs~----Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 137 HDSP----VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred hccc----ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 6666 999999999999999999999999999877666554 5689999999999899999999999999999988
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+.-+.+++|...|+|+.|+|....+++++ .|..+++||.++...- ....+|...+ +...+.++
T Consensus 213 kee~vL~GHgwdVksvdWHP~kgLiasgs------kDnlVKlWDprSg~cl--~tlh~HKntV---------l~~~f~~n 275 (464)
T KOG0284|consen 213 KEERVLRGHGWDVKSVDWHPTKGLIASGS------KDNLVKLWDPRSGSCL--ATLHGHKNTV---------LAVKFNPN 275 (464)
T ss_pred chhheeccCCCCcceeccCCccceeEEcc------CCceeEeecCCCcchh--hhhhhccceE---------EEEEEcCC
Confidence 88889999999999999999999999999 8999999999874211 1122333333 34456678
Q ss_pred eeEEEEEcCCCcEEEEEcCc------eeeeeeeecccccc------cccCCCCCceeeec---------------cceee
Q 004298 174 FSILCSGDKDGSICFNIFGI------FPIGKINIHKFHVA------IPNADEQGTCRLLN---------------ASIYK 226 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~------~~ig~~~i~~~~~~------~~s~~~~~~~~l~~---------------~~I~~ 226 (763)
+++|++++.|..+++++.++ +.-++-.+.....+ +.+++.++.+..|. ..|.+
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 89999999999999998772 22233233222222 34777888888765 57999
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
++|.|=|..|+.++.|.
T Consensus 356 l~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDR 372 (464)
T ss_pred eeccccceeEeecCCCc
Confidence 99999988877766554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.9e-18 Score=166.61 Aligned_cols=208 Identities=21% Similarity=0.257 Sum_probs=163.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-- 93 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-- 93 (763)
|...++|.++.|+++.+++++++.||.+.||+. +.+++.-++ +...|...+|+|.|+++|+|+-|+...||++.+.
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 444567999999999999999999999999998 888888877 7789999999999999999999999999999754
Q ss_pred ----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 94 ----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+..+.+.+|.+.+.|+.|-+|++ ++++| .|.+.-+||+.+.. ....+.+|.+-+ +...
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~S------GD~TCalWDie~g~--~~~~f~GH~gDV---------~sls 193 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGS------GDMTCALWDIETGQ--QTQVFHGHTGDV---------MSLS 193 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCc-eEecC------CCceEEEEEcccce--EEEEecCCcccE---------EEEe
Confidence 45567899999999999998665 55665 69999999998732 222344555433 3333
Q ss_pred cCC-CeeEEEEEcCCCcEEEEEcCc------eeeeeeeec-----ccccccccCCCCCceeeec----------------
Q 004298 170 SHQ-RFSILCSGDKDGSICFNIFGI------FPIGKINIH-----KFHVAIPNADEQGTCRLLN---------------- 221 (763)
Q Consensus 170 ~~~-~~~~L~sgs~DG~I~lw~~~~------~~ig~~~i~-----~~~~~~~s~~~~~~~~l~~---------------- 221 (763)
..| +++.+++|+.|+..++|+.+. |+-+.-++. .....+.+++.++++|+++
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 444 789999999999999998664 333332222 2223356888999999987
Q ss_pred cceeeEEecCCCCEEEEEeecC
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|.+++||..|+.|+++..|.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred CCceeEEEcccccEEEeeecCC
Confidence 4689999999999998876554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=185.95 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=147.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-CeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATED-SKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D-g~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+|..++|+.+|+.||.|+.. |++.||.. ...-|.+.. |-..+++++++|||+++|+|++||+|+|||...|-|+.+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT 387 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT 387 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE
Confidence 459999999999999998766 89999998 434444444 778999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+..|++.|+.+.|+..|+.+.+.+ -||++|.||+..... ..+ |... ..++..+.+.++.+.+++
T Consensus 388 FteHts~Vt~v~f~~~g~~llssS------LDGtVRAwDlkRYrN--fRT------ft~P--~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSS------LDGTVRAWDLKRYRN--FRT------FTSP--EPIQFSCVAVDPSGELVC 451 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEee------cCCeEEeeeecccce--eee------ecCC--CceeeeEEEEcCCCCEEE
Confidence 999999999999999999999998 899999999865210 000 0000 011111223345556666
Q ss_pred EEcCCC-cEEEEEcCcee------eeeeeec-----ccccccccCCCCCceeeec--------------cceeeEEecCC
Q 004298 179 SGDKDG-SICFNIFGIFP------IGKINIH-----KFHVAIPNADEQGTCRLLN--------------ASIYKVALSKD 232 (763)
Q Consensus 179 sgs~DG-~I~lw~~~~~~------ig~~~i~-----~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD 232 (763)
.|+.|. .|++|.+..-. -+.-+++ .......+++.|+++|+|+ .-+..++|+||
T Consensus 452 AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 666554 46666432211 0111111 1111234566677777776 34788999999
Q ss_pred CCEEEEEeecC
Q 004298 233 LFHLTVLCSGQ 243 (763)
Q Consensus 233 g~~Llv~~~d~ 243 (763)
|+.+++++.++
T Consensus 532 G~elaVaTldg 542 (893)
T KOG0291|consen 532 GKELAVATLDG 542 (893)
T ss_pred CCeEEEEEecc
Confidence 99999999886
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=165.95 Aligned_cols=221 Identities=14% Similarity=0.184 Sum_probs=164.7
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc------eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 18 KPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ------RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~------~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+..++.|+.++..+.+ +.+.+++.|.++.+|+++.. .+..+. |...|..+..++||++..+++.||++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 3446789999999974 88999999999999999432 233333 778899999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+++|+..+.|.+|...|.++++++|++.+++|+ .|+++++|+....... ..+..++... +.++.+.
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS------rDkTiklwnt~g~ck~-t~~~~~~~~W-------Vscvrfs 157 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS------RDKTIKLWNTLGVCKY-TIHEDSHREW-------VSCVRFS 157 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCceeecCC------CcceeeeeeecccEEE-EEecCCCcCc-------EEEEEEc
Confidence 999999999999999999999999999999999 9999999998763110 0000111222 2344555
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeee-eecccccc----------cccCCCCCceeeec-------------ccee
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKI-NIHKFHVA----------IPNADEQGTCRLLN-------------ASIY 225 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~-~i~~~~~~----------~~s~~~~~~~~l~~-------------~~I~ 225 (763)
+.....++++++.|+++++|+.+.+....- .-++...+ ..+++.++..-+|+ ..|.
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 555578999999999999999877644321 11111111 23677788888887 4789
Q ss_pred eEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 226 KVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
+++|||+.-.|..++. . .|..+.++..
T Consensus 238 sl~fspnrywL~~at~-~------------sIkIwdl~~~ 264 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAATA-T------------SIKIWDLESK 264 (315)
T ss_pred eEEecCCceeEeeccC-C------------ceEEEeccch
Confidence 9999998555544432 2 5666666654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=186.62 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=151.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc--eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc-cCCeE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQ--RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV-ENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~--~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv-e~g~~ 95 (763)
...|.++.|+|+|+.+++++.++.+++|.. .+. ....+ .|...|.+++|+|||+++++|+.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 345999999999999999999999999999 333 23332 37778999999999999999999999999999 56799
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
++++++|...|++++|+|+++.+++|+ .|+++++||... ........+|...+ ...++.++++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs------~D~tvriWd~~~--~~~~~~l~~hs~~i---------s~~~f~~d~~ 301 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGS------DDGTVRIWDVRT--GECVRKLKGHSDGI---------SGLAFSPDGN 301 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEec------CCCcEEEEeccC--CeEEEeeeccCCce---------EEEEECCCCC
Confidence 999999999999999999999999999 899999999987 22222333443333 2335678889
Q ss_pred EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeecc-ceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNA-SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~-~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+|++++.||.|++|+......... ..+ ..... . ++..++|||+|+++++++.|.
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~--~~~-----~~~~~-------~~~~~~~~fsp~~~~ll~~~~d~ 356 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCL--KLL-----SGAEN-------SAPVTSVQFSPNGKYLLSASLDR 356 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeee--ecc-----cCCCC-------CCceeEEEECCCCcEEEEecCCC
Confidence 999999999999999776653300 000 00000 1 378899999999999998876
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=182.72 Aligned_cols=216 Identities=18% Similarity=0.165 Sum_probs=154.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL---- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~---- 95 (763)
..+.+++++|||+++|+|+.||.|+||+. .|-++.++. |...|+++.|+.+|+.+.+++-||+|+.||+...+.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 35999999999999999999999999999 677787776 888999999999999999999999888776654443
Q ss_pred ----------------------------------------EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceee
Q 004298 96 ----------------------------------------LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRF 135 (763)
Q Consensus 96 ----------------------------------------~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~ 135 (763)
+..+.+|+++|.+++|+|.+..++++| +|+++|+
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S------WDkTVRi 504 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS------WDKTVRI 504 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc------ccceEEE
Confidence 334448999999999999999999999 9999999
Q ss_pred cCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC-ceeeeeeeecccccccccCCCC
Q 004298 136 FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG-IFPIGKINIHKFHVAIPNADEQ 214 (763)
Q Consensus 136 wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~-~~~ig~~~i~~~~~~~~s~~~~ 214 (763)
|++-......... +..-..+...+.|+++-+++++-||.|.+|+.. ....|+++...-... .....+
T Consensus 505 W~if~s~~~vEtl-----------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~-gR~~~D 572 (893)
T KOG0291|consen 505 WDIFSSSGTVETL-----------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG-GRKETD 572 (893)
T ss_pred EEeeccCceeeeE-----------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc-cccccc
Confidence 9986532111100 011122445677899999999999999999743 334544432111000 000000
Q ss_pred Ccee---eeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 215 GTCR---LLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 215 ~~~~---l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
.... --....+.+++|+||+.+++++... .++++.+....+
T Consensus 573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn------------~iCiY~v~~~vl 616 (893)
T KOG0291|consen 573 RITAENSAKGKTFTTICYSADGKCILAGGESN------------SICIYDVPEGVL 616 (893)
T ss_pred eeehhhcccCCceEEEEEcCCCCEEEecCCcc------------cEEEEECchhhe
Confidence 0000 0013578999999999999886644 677776665543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=188.30 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=149.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe---------------------------------cCCCcEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI---------------------------------SPGKSVTSLC 68 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~---------------------------------~~~~~V~~l~ 68 (763)
..|+|..|++++.++|.|..|..|++|.++..++..+ .|.++|....
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 4599999999999999999999999999963221111 1567899999
Q ss_pred EccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 69 WRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 69 wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
|+||.++|++++.|++||+|++.+..++-.+++|..+|+++.|+|.|.+++|+| .|++.++|......+. ..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas------~D~tArLWs~d~~~Pl--Ri 530 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS------HDQTARLWSTDHNKPL--RI 530 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC------CCceeeeeecccCCch--hh
Confidence 999999999999999999999999999999999999999999999999999999 8999999976642111 11
Q ss_pred ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceee---ecccee
Q 004298 149 VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRL---LNASIY 225 (763)
Q Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l---~~~~I~ 225 (763)
..+|.+-+ -+..++|+.+++++||.|.+|++|+...-. .+|+ +.++|.
T Consensus 531 faghlsDV---------~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--------------------~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 531 FAGHLSDV---------DCVSFHPNSNYVATGSSDRTVRLWDVSTGN--------------------SVRIFTGHKGPVT 581 (707)
T ss_pred hccccccc---------ceEEECCcccccccCCCCceEEEEEcCCCc--------------------EEEEecCCCCceE
Confidence 22222211 123578999999999999999999843211 1232 336899
Q ss_pred eEEecCCCCEEEEEeecCc
Q 004298 226 KVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d~l 244 (763)
+++|||+|++|+.+..+++
T Consensus 582 al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred EEEEcCCCceEeecccCCc
Confidence 9999999999999988873
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=160.29 Aligned_cols=242 Identities=17% Similarity=0.245 Sum_probs=165.1
Q ss_pred ecCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc--cCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 15 QFDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRF--NWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l--~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+...|..+.|.+++|||.. .+++.++.||+|++|.+ +|+.+-+. .+.++|.+++|+.||..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 3445555779999999954 66778999999999999 34544433 3788999999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCC--ceeccCCCCCcccCCceeecCCCCCCCC----CCCccc-------------
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQ--PSKNDFGNIPTYEDRTSRFFPPAPRIPQ----MPGLVS------------- 150 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~--~l~s~s~~~~~~~d~~i~~wd~~~~~~~----l~~~~s------------- 150 (763)
+.+++ +.++..|.++|.++.|-+... .+++|| +|+++++||.+...+. +|...-
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS------WDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGS------WDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVAT 173 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecc------cccceeecccCCCCeeeeeeccceeeehhccCceeEEEe
Confidence 99995 456778999999999987654 789999 9999999999863211 111000
Q ss_pred CCccc-c--------------cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc----------------------
Q 004298 151 GDTGF-T--------------DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI---------------------- 193 (763)
Q Consensus 151 ~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~---------------------- 193 (763)
+.... + ......+.++.. ..+.+-.+.|+-.|.+.+-..+.
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~--f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVAC--FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEE--EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 00000 0 000111222222 23333458899999988763322
Q ss_pred eeeeeeeecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCcccc--ccCCCCCCcE
Q 004298 194 FPIGKINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQE--ELGGHGMHGL 257 (763)
Q Consensus 194 ~~ig~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~--~~~~~~~~~l 257 (763)
+.+..+..|.....+.+.|.||++..|+ .+|++.+|+.+|+.++.+..-+.... .+.+...+.|
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~~~~~I 331 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQYKPQI 331 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCCCCCeE
Confidence 2333444555566677899999999998 58999999999999988776443211 1111222356
Q ss_pred EEEEeecc
Q 004298 258 HCLVLDTS 265 (763)
Q Consensus 258 ~~~~ld~~ 265 (763)
.+.+..+.
T Consensus 332 ~l~~~~~~ 339 (347)
T KOG0647|consen 332 FLHPVSTE 339 (347)
T ss_pred EEeecccc
Confidence 66655544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=180.27 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=135.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCc--------eEEEec-CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQ--------RLWTIS-PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~--------~v~~~~-~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdv 90 (763)
+.|.+++|+| ++++||+|+.|++|++|++... .+..+. |...|.+++|+|++ ++|++|+.|++|+|||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 4599999999 8899999999999999999432 233443 77899999999986 69999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
++++.+..+.+|...|.+++|+|++..+++++ .|+++++||.+... ......++.... .....|
T Consensus 156 ~tg~~~~~l~~h~~~V~sla~spdG~lLatgs------~Dg~IrIwD~rsg~--~v~tl~~H~~~~------~~~~~w-- 219 (493)
T PTZ00421 156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS------KDKKLNIIDPRDGT--IVSSVEAHASAK------SQRCLW-- 219 (493)
T ss_pred CCCeEEEEEcCCCCceEEEEEECCCCEEEEec------CCCEEEEEECCCCc--EEEEEecCCCCc------ceEEEE--
Confidence 99999999999999999999999999999998 89999999988631 111112222111 111222
Q ss_pred CCCeeEEEE-E---cCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 171 HQRFSILCS-G---DKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 171 ~~~~~~L~s-g---s~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.++.+.+++ | +.||.|++|+.+... .....++. . ..+....|++|++.+++++.
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~----------~-------~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ----------S-------SALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC----------C-------CceEEEEEcCCCCEEEEEEe
Confidence 233334444 4 358999999976432 11111000 0 12445678999998888765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-17 Score=156.87 Aligned_cols=200 Identities=21% Similarity=0.179 Sum_probs=149.4
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe--EEEEecccCCceeEE
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK--LLRSLKSHTVAVVCL 109 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~--~~~~l~~h~~~V~~l 109 (763)
-+||+++.|.+|++|.. +|....++.| ...|+.+...||++.||+|+ ...||+||+.+++ .+.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 57899999999999999 8999999985 46899999999999999887 4679999998764 688999999999999
Q ss_pred EeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEE
Q 004298 110 NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF 188 (763)
Q Consensus 110 ~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~l 188 (763)
.|..+|+..++|+ +||++|+||++.. .++...+.+... ....+++..-|++|+.+|.|++
T Consensus 90 gF~~dgrWMyTgs------eDgt~kIWdlR~~~~qR~~~~~spVn-------------~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 90 GFQCDGRWMYTGS------EDGTVKIWDLRSLSCQRNYQHNSPVN-------------TVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred EEeecCeEEEecC------CCceEEEEeccCcccchhccCCCCcc-------------eEEecCCcceEEeecCCCcEEE
Confidence 9999999999999 9999999999873 222222222222 2235677778999999999999
Q ss_pred EEcCceeeeeeeeccc-------c-----cccccCCCCCceeeec--------------------cceeeEEecCCCCEE
Q 004298 189 NIFGIFPIGKINIHKF-------H-----VAIPNADEQGTCRLLN--------------------ASIYKVALSKDLFHL 236 (763)
Q Consensus 189 w~~~~~~ig~~~i~~~-------~-----~~~~s~~~~~~~~l~~--------------------~~I~~v~~SpDg~~L 236 (763)
|+.+.-......+... . .-.......|.+-.|+ +-|.++-+|||+++|
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 9876532221111110 0 0011222445555554 458889999999999
Q ss_pred EEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 237 TVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 237 lv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
+.++.|+ +++++..|.-
T Consensus 231 at~ssdk------------tv~iwn~~~~ 247 (311)
T KOG0315|consen 231 ATCSSDK------------TVKIWNTDDF 247 (311)
T ss_pred EeecCCc------------eEEEEecCCc
Confidence 9998877 6666665544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-17 Score=156.69 Aligned_cols=214 Identities=20% Similarity=0.228 Sum_probs=157.9
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCc
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGT 84 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~ 84 (763)
....+++|.. +.|..+...|++..||+++. ..|++|+++ .+++.++. |.+.|+++.|..||+.+.+|++||+
T Consensus 31 ~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 31 ICSRTIQHPD---SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred eEEEEEecCc---cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 3445555543 35999999999999998774 569999993 34677776 7789999999999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
++|||+++-.+-+.+ .|.++|+++..+|+...+++|. .+|.|++||+........ .+.+.+..++
T Consensus 107 ~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~d------qsg~irvWDl~~~~c~~~--------liPe~~~~i~ 171 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGD------QSGNIRVWDLGENSCTHE--------LIPEDDTSIQ 171 (311)
T ss_pred EEEEeccCcccchhc-cCCCCcceEEecCCcceEEeec------CCCcEEEEEccCCccccc--------cCCCCCccee
Confidence 999999986666666 4679999999999999999987 899999999886421100 1111122233
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCc-------eeeeeeeecccc----------cccccCCCCCceeeec------
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGI-------FPIGKINIHKFH----------VAIPNADEQGTCRLLN------ 221 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-------~~ig~~~i~~~~----------~~~~s~~~~~~~~l~~------ 221 (763)
.+ ...+++.+|+.+...|+.++|..-. .++.+++.+... ..+.+++.+.++++|+
T Consensus 172 sl--~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 172 SL--TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eE--EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 33 2457778888888889998885321 234444433321 1234677888888886
Q ss_pred ---------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ---------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ---------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+..++||.||.+|+.+.+|.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 3688999999999999988775
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=181.15 Aligned_cols=194 Identities=20% Similarity=0.230 Sum_probs=150.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cC-ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NW-QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~-~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|..++|+|++.++++++.|++|+||++ .. ..+..+. |...|++++|+|+|+.+++|+.|++|+|||+++++++..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 34999999999999999999999999999 43 3455554 888999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...|++++|++++..+++++ .|+.+++||.......+.....++.. .. ......+++++.+++
T Consensus 284 l~~hs~~is~~~f~~d~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~------~~-~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDGNLLVSAS------YDGTIRVWDLETGSKLCLKLLSGAEN------SA-PVTSVQFSPNGKYLL 350 (456)
T ss_pred eeccCCceEEEEECCCCCEEEEcC------CCccEEEEECCCCceeeeecccCCCC------CC-ceeEEEECCCCcEEE
Confidence 999999999999999999999998 79999999998743110011111111 10 112345678999999
Q ss_pred EEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 179 SGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.|+.+++|++... ..+.+..+... . ..+.+..++++|+.++.+..+.
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNL-----------V----RCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCc-----------c----eeEecccccCCCCeEEEEeCCc
Confidence 9999999999997743 33443322210 0 1244556688889888888766
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-17 Score=160.46 Aligned_cols=205 Identities=19% Similarity=0.226 Sum_probs=152.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++.|..+.|+|+|..+|+|+.|..|.+|+.. -+..|.++ |.+.|..+.|.+||..|.+++.|.+|+.||+++|+.++
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 4679999999999999999999999999983 45677776 88899999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
++++|..-|+.+.-+.-|. .+.+++ +|+++++||.+.+-.... + +..++...+.+.+...-
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~Sgs------dD~t~kl~D~R~k~~~~t--------~----~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGS------DDGTLKLWDIRKKEAIKT--------F----ENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred hhccccceeeecCccccCCeEEEecC------CCceEEEEeecccchhhc--------c----ccceeEEEEEecccccc
Confidence 9999999999998555554 556777 899999999996421100 0 11223344456677778
Q ss_pred EEEEcCCCcEEEEEcCce---ee--e------eeeecccccccccCCCCCceeeecc----------------------c
Q 004298 177 LCSGDKDGSICFNIFGIF---PI--G------KINIHKFHVAIPNADEQGTCRLLNA----------------------S 223 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~---~i--g------~~~i~~~~~~~~s~~~~~~~~l~~~----------------------~ 223 (763)
..+|+-|+.|++|+...- .+ | .+.+........+.+-+.++++|+- .
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 889999999999986321 10 0 0111111112234456777888771 2
Q ss_pred eeeEEecCCCCEEEEEeecC
Q 004298 224 IYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 224 I~~v~~SpDg~~Llv~~~d~ 243 (763)
-..++|||+++.+-++..|.
T Consensus 269 lL~cswsp~~~~i~ags~dr 288 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADR 288 (338)
T ss_pred cceeeccCCCCccccccccc
Confidence 35689999999988887766
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=157.11 Aligned_cols=203 Identities=14% Similarity=0.135 Sum_probs=153.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc------eEEEe-c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ------RLWTI-S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~------~v~~~-~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
..|..++|+|.|+++|.|+-|+...||+++.. ++... . |...+.|..|-+|+ .|++|+.|.+..+||+++|
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG 176 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc
Confidence 47999999999999999999999999999532 33322 2 77889999998865 6889999999999999999
Q ss_pred eEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+.+..|.+|.+.|.+++.+| +++.+++|+ -|+..++||++... ....+.+|.+- ++. ..+.|
T Consensus 177 ~~~~~f~GH~gDV~slsl~p~~~ntFvSg~------cD~~aklWD~R~~~--c~qtF~ghesD-------INs--v~ffP 239 (343)
T KOG0286|consen 177 QQTQVFHGHTGDVMSLSLSPSDGNTFVSGG------CDKSAKLWDVRSGQ--CVQTFEGHESD-------INS--VRFFP 239 (343)
T ss_pred eEEEEecCCcccEEEEecCCCCCCeEEecc------cccceeeeeccCcc--eeEeecccccc-------cce--EEEcc
Confidence 99999999999999999999 889999998 89999999999742 12222333222 222 34668
Q ss_pred CeeEEEEEcCCCcEEEEEcCce-eeeeeee-------ccc----cccc-ccCCCCCceeeec--------------ccee
Q 004298 173 RFSILCSGDKDGSICFNIFGIF-PIGKINI-------HKF----HVAI-PNADEQGTCRLLN--------------ASIY 225 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i-------~~~----~~~~-~s~~~~~~~~l~~--------------~~I~ 225 (763)
++.-+++|+.|++.++|+++.- .+..+.- ... .+.. ..+..+..+.+|+ ..|.
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS 319 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS 319 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence 8889999999999999987652 1221110 000 0111 1334667777887 5799
Q ss_pred eEEecCCCCEEEEEeec
Q 004298 226 KVALSKDLFHLTVLCSG 242 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d 242 (763)
++..+|||..+..++=|
T Consensus 320 cl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 320 CLGVSPDGMAVATGSWD 336 (343)
T ss_pred EEEECCCCcEEEecchh
Confidence 99999999887765443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=155.34 Aligned_cols=223 Identities=19% Similarity=0.166 Sum_probs=159.5
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
..|++| ++.+.++.+|++|.+++.|.+..||.. ||+++-++. |.+.|.|+..+-+.+.+++|+.|.+++|||++
T Consensus 7 ~GHERp----lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 7 QGHERP----LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccCccc----cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 458888 999999999999999999999999998 999999997 88999999999999999999999999999999
Q ss_pred CCeEEEEecc-----------------------------------------------------cCCceeEEEeecCCCce
Q 004298 92 NGKLLRSLKS-----------------------------------------------------HTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 92 ~g~~~~~l~~-----------------------------------------------------h~~~V~~l~ws~~~~~l 118 (763)
+|+.+.+++. +.+.++.+.|.|-+..+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9998877752 22445555566666666
Q ss_pred eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK 198 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~ 198 (763)
++|. ++|.|..||.++...... ....| ...+..++ ++++..++++|+.|.+-++|+...+.+-+
T Consensus 163 i~Gh------e~G~is~~da~~g~~~v~-s~~~h-------~~~Ind~q--~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 163 IAGH------EDGSISIYDARTGKELVD-SDEEH-------SSKINDLQ--FSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred EEec------CCCcEEEEEcccCceeee-chhhh-------cccccccc--ccCCcceEEecccCccceeeeccceeeEE
Confidence 6655 677777777765211110 00111 11233333 45677899999999999999987765433
Q ss_pred eeecccccccc-----------cCC---------------------------CCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 199 INIHKFHVAIP-----------NAD---------------------------EQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 199 ~~i~~~~~~~~-----------s~~---------------------------~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
--....|.+.. -++ ..+.++-+.++|.+++|+|||+....+.
T Consensus 227 ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 227 TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 22222211110 000 1233444558999999999999888777
Q ss_pred ecCccccccCCCCCCcEEEEEeeccccc
Q 004298 241 SGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 241 ~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
+|+ .+.+..+|.+++.
T Consensus 307 EDG------------~VR~h~Fd~~YF~ 322 (327)
T KOG0643|consen 307 EDG------------YVRLHHFDSNYFD 322 (327)
T ss_pred CCc------------eEEEEEeccchhh
Confidence 665 6667777776653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=184.61 Aligned_cols=221 Identities=16% Similarity=0.252 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC---c------------eEEE----e-cCCCcEEEEEEccCCCEEEEEEcC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW---Q------------RLWT----I-SPGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~------------~v~~----~-~~~~~V~~l~wspDG~~Lasg~~D 82 (763)
.|.|+.|+|||.+||+|++|+.|.||...+ + .-|+ + .|...|..++|+||+.+||+++.|
T Consensus 71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence 399999999999999999999999999862 1 1121 1 277789999999999999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CC-CCCCcccCCcccccCCc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IP-QMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~-~l~~~~s~~~~~~~~~~ 160 (763)
++|.||+..+.+.+..+++|.+.|..+.|.|-|+++++-+ +|+++++|....- +. .+..++.. ...+
T Consensus 151 nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs------dDrtikvwrt~dw~i~k~It~pf~~-----~~~~ 219 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS------DDRTLKVWRTSDWGIEKSITKPFEE-----SPLT 219 (942)
T ss_pred ceEEEEccccceeeeeeecccccccceEECCccCeeeeec------CCceEEEEEcccceeeEeeccchhh-----CCCc
Confidence 9999999999999999999999999999999999999998 8999999985430 00 00000000 0011
Q ss_pred ccccceecccCCCeeEEEEEcC----CCcEEEEEcCcee-----ee--------eee----------eccccc-----cc
Q 004298 161 DSFRELANSSHQRFSILCSGDK----DGSICFNIFGIFP-----IG--------KIN----------IHKFHV-----AI 208 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~----DG~I~lw~~~~~~-----ig--------~~~----------i~~~~~-----~~ 208 (763)
..+.++.| +|++.+|++... -.++.|..-+.+. +| +++ -..... -.
T Consensus 220 T~f~RlSW--SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 220 TFFLRLSW--SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred ceeeeccc--CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 22223333 345555555431 1122222111111 00 000 000000 12
Q ss_pred ccCCCCCceeeec---------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccc
Q 004298 209 PNADEQGTCRLLN---------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 209 ~s~~~~~~~~l~~---------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
++++.|+++.+|. .+|.+++|||||..|++++.|+ +++++.++-..|-
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG------------tV~~i~Fee~ElG 360 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG------------TVALIHFEEKELG 360 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC------------eEEEEEcchHHhC
Confidence 3556677777775 5899999999999999998887 8889988876554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=168.33 Aligned_cols=185 Identities=16% Similarity=0.216 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce--------------------------------EEEec----------C
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQR--------------------------------LWTIS----------P 60 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~--------------------------------v~~~~----------~ 60 (763)
|.++.|+.+|++|++++.|+++.+|+. .|+. +..+. |
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence 999999999999999999999999998 3321 11110 3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCC---------ceeccCCCCCcccCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ---------PSKNDFGNIPTYEDR 131 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~---------~l~s~s~~~~~~~d~ 131 (763)
..+|.++.|+|.|++|+++++|++++||+...+...+.+..|...|..+.|+|+|. .+++++ .|.
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas------~ds 432 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS------FDS 432 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee------cCC
Confidence 45799999999999999999999999999999999999999999999999999763 355665 799
Q ss_pred ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccC
Q 004298 132 TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNA 211 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~ 211 (763)
++++||.....+. .....|...+ ...++++++.++++|+.||.|++|......+-.- .
T Consensus 433 tV~lwdv~~gv~i--~~f~kH~~pV---------ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s-----------~ 490 (524)
T KOG0273|consen 433 TVKLWDVESGVPI--HTLMKHQEPV---------YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS-----------Y 490 (524)
T ss_pred eEEEEEccCCcee--EeeccCCCce---------EEEEecCCCcEEEecCCCCeeEeccccchheeEe-----------e
Confidence 9999998763221 1122233222 3445778999999999999999997444322111 0
Q ss_pred CCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 212 DEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 212 ~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.. ++.|..++|+.+|..+.+..+++
T Consensus 491 ~~-------~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 491 QG-------TGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred cC-------CCeEEEEEEcCCCCEEEEEecCC
Confidence 01 12478999999999999888776
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-16 Score=164.91 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
-|.++.|+|||.++|+++.||+|.+|+- +|+++..+. |.+.|.+++|+||++.+++++.|.+++|||+.++++++
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 3999999999999999999999999998 899998885 78899999999999999999999999999999887766
Q ss_pred Eec-------------------------------------------ccCCceeEEEeecCCCceeccCCCCCcccCCcee
Q 004298 98 SLK-------------------------------------------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 98 ~l~-------------------------------------------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~ 134 (763)
++. +|...|++++.++++.++.+|+ .||.|.
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs------yDG~I~ 345 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS------YDGHIN 345 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec------cCceEE
Confidence 553 6889999999999999999998 788888
Q ss_pred ecCCCC
Q 004298 135 FFPPAP 140 (763)
Q Consensus 135 ~wd~~~ 140 (763)
-|+...
T Consensus 346 ~W~~~~ 351 (603)
T KOG0318|consen 346 SWDSGS 351 (603)
T ss_pred EEecCC
Confidence 887643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=165.39 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=149.7
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc------eEEEe-----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ------RLWTI-----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~------~v~~~-----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+.|.++++|..+ ..+++++.|+++++|.+... .+... .|++.|+|++.+|+.++||+|+.|++.+||+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 458999998766 78999999999999999541 12211 2889999999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
++.+....++.+|...|+|+.|+++.+.++++| .|+++++|.+... .......||++.+ +...
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S------gD~TvKIW~is~f--SClkT~eGH~~aV---------lra~ 554 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS------GDKTVKIWSISTF--SCLKTFEGHTSAV---------LRAS 554 (775)
T ss_pred ccCceEEEEeeCCccceEEEEeccccceeEecc------CCceEEEEEeccc--eeeeeecCcccee---------Eeee
Confidence 999999999999999999999999999999999 8999999988762 2334456676655 4455
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+-.++..|++++.||-|++|....-.+- .++-.++..|..++-+|++..++.++.|+
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~-----------------~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECE-----------------MTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhh-----------------hhhhhccceeEEEeecCccceeEecCCCe
Confidence 6678889999999999999985543221 11122334677888999988666665554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=186.71 Aligned_cols=206 Identities=13% Similarity=0.182 Sum_probs=152.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---------eEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEc
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---------RLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---------~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdv 90 (763)
.+.|.+++|+|+++++|+|+.|+.|+||+++.. .+..+.+...|.+++|+| ++++||+|+.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 456999999999999999999999999997421 223334556799999998 5789999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
++++.+..+.+|...|+++.|+| ++..+++|+ .|+++++||...... ......+ ..+..+.+
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs------~Dg~v~iWd~~~~~~--~~~~~~~--------~~v~~v~~- 625 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS------DDGSVKLWSINQGVS--IGTIKTK--------ANICCVQF- 625 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc------CCCEEEEEECCCCcE--EEEEecC--------CCeEEEEE-
Confidence 99999999999999999999997 678899998 899999999875311 1111111 01112222
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCcee--eeeeeeccc---------ccccccCCCCCceeeecc----------------
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFP--IGKINIHKF---------HVAIPNADEQGTCRLLNA---------------- 222 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~--ig~~~i~~~---------~~~~~s~~~~~~~~l~~~---------------- 222 (763)
..+++.+|++|+.||.|++|+..... ...+..|.. ...+.+++.|+.+++|+.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 13567899999999999999876432 111111111 112347778999999962
Q ss_pred ----ceeeEEecCCCCEEEEEeecC
Q 004298 223 ----SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 ----~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+..++|+|++.++++++.|+
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 245688999999888887766
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=170.20 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=125.6
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEc--cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRF--NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|+++.|.| .+.||++++.|+.|+||++ .+..+.++. |...|.+++|+++|..|.+++-|+.+++||+|+|+++.
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 3499999999 8899999999999999999 466777765 88899999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+.. ...++|+.|.|++ ..+.+|+ .|+.|+.||++.. .+......+.+.+ ....+-+.+..
T Consensus 295 ~f~~-~~~~~cvkf~pd~~n~fl~G~------sd~ki~~wDiRs~--kvvqeYd~hLg~i---------~~i~F~~~g~r 356 (503)
T KOG0282|consen 295 RFHL-DKVPTCVKFHPDNQNIFLVGG------SDKKIRQWDIRSG--KVVQEYDRHLGAI---------LDITFVDEGRR 356 (503)
T ss_pred EEec-CCCceeeecCCCCCcEEEEec------CCCcEEEEeccch--HHHHHHHhhhhhe---------eeeEEccCCce
Confidence 9865 5688999999998 5666676 7999999999873 1111111222211 12234477789
Q ss_pred EEEEcCCCcEEEEEcCce
Q 004298 177 LCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~ 194 (763)
+++.+.|+++++|.++..
T Consensus 357 FissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIP 374 (503)
T ss_pred EeeeccCccEEEEEcCCC
Confidence 999999999999987754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=175.15 Aligned_cols=216 Identities=15% Similarity=0.124 Sum_probs=155.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE------------------------------------------
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLW------------------------------------------ 56 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~------------------------------------------ 56 (763)
+.-+.|+++.|||||++||+|+.|+.|+||.+....+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 34466999999999999999999999999998430000
Q ss_pred -----------Eec---------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeec-CC
Q 004298 57 -----------TIS---------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE-DA 115 (763)
Q Consensus 57 -----------~~~---------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~-~~ 115 (763)
.+. |...|..|.||.++ +|.+++.|.+||||++...++++.| .|.+-|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCC
Confidence 000 22348999999875 9999999999999999999999999 6999999999999 55
Q ss_pred CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee
Q 004298 116 QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 116 ~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
+++++|+ -|+.+|+|++....-. .-.+....+.. .++.|+|+..++|+.+|.+++|......
T Consensus 423 ryFiSGS------LD~KvRiWsI~d~~Vv----------~W~Dl~~lITA--vcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 423 RYFISGS------LDGKVRLWSISDKKVV----------DWNDLRDLITA--VCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred CcEeecc------cccceEEeecCcCeeE----------eehhhhhhhee--EEeccCCceEEEEEeccEEEEEEccCCe
Confidence 8999999 8999999998753110 00111222222 3456778999999999999999644321
Q ss_pred e-eeeee-------------cccccc------cccCCCCCceeeecc----------------ceeeEEecCCCCEEEEE
Q 004298 196 I-GKINI-------------HKFHVA------IPNADEQGTCRLLNA----------------SIYKVALSKDLFHLTVL 239 (763)
Q Consensus 196 i-g~~~i-------------~~~~~~------~~s~~~~~~~~l~~~----------------~I~~v~~SpDg~~Llv~ 239 (763)
. -...+ +.+... ....++|..+|++++ +-...+|+.||++++.+
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 1 11111 111000 112346778888873 33567999999999999
Q ss_pred eecCccccccCCCCCCcEEEEEeeccc
Q 004298 240 CSGQLSQEELGGHGMHGLHCLVLDTSI 266 (763)
Q Consensus 240 ~~d~l~~~~~~~~~~~~l~~~~ld~~~ 266 (763)
+.|. .+|++.++..-
T Consensus 565 seDs------------~VYiW~~~~~~ 579 (712)
T KOG0283|consen 565 SEDS------------WVYIWKNDSFN 579 (712)
T ss_pred ecCc------------eEEEEeCCCCc
Confidence 8766 89999887553
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=158.32 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=129.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
-+.|.++++.|-...+++|+.|++|.||++ +|+...++. |...|..+++|+--.|+++++.|+.|+-||++..+.++.
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 378999999999999999999999999999 777666776 778999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|-+.|.|++..|.-..+++|+ .|.++|+||++.+.+.. ...||...+ ..+. +.+....++
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~g------rDst~RvWDiRtr~~V~--~l~GH~~~V-------~~V~--~~~~dpqvi 293 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGG------RDSTIRVWDIRTRASVH--VLSGHTNPV-------ASVM--CQPTDPQVI 293 (460)
T ss_pred hccccceeEEEeccccceeEEecC------CcceEEEeeecccceEE--EecCCCCcc-------eeEE--eecCCCceE
Confidence 999999999999999999999998 89999999999863321 123444433 1111 112223589
Q ss_pred EEcCCCcEEEEEcC
Q 004298 179 SGDKDGSICFNIFG 192 (763)
Q Consensus 179 sgs~DG~I~lw~~~ 192 (763)
+|+.|++|++|+..
T Consensus 294 t~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLR 307 (460)
T ss_pred EecCCceEEEeeec
Confidence 99999999999743
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=182.65 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=151.4
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|.+++|+|. +.++|+++.||+|++|++ +++.+..+. |.+.|++++|+| +|.+|++|+.||+|++||+.++..+.
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 35889999984 789999999999999999 566666664 788999999997 89999999999999999999999998
Q ss_pred EecccCCceeEEEee-cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWE-EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws-~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+..+ ..|.++.|. +++..+++|+ .|+.+++||.+...... ....+|... +..+.+ . ++..
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs------~dg~I~iwD~~~~~~~~-~~~~~h~~~-------V~~v~f--~-~~~~ 674 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGS------ADHKVYYYDLRNPKLPL-CTMIGHSKT-------VSYVRF--V-DSST 674 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEe------CCCeEEEEECCCCCccc-eEecCCCCC-------EEEEEE--e-CCCE
Confidence 88754 689999995 5688999998 89999999987532111 111223221 222333 2 3467
Q ss_pred EEEEcCCCcEEEEEcCce-------eeeeeeeccc----------ccccccCCCCCceeeecc-----------------
Q 004298 177 LCSGDKDGSICFNIFGIF-------PIGKINIHKF----------HVAIPNADEQGTCRLLNA----------------- 222 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~-------~ig~~~i~~~----------~~~~~s~~~~~~~~l~~~----------------- 222 (763)
|++|+.||+|++|+.... ++..+..+.. ...+.+++.++.+++|+.
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 999999999999987531 2222222111 112346677888888862
Q ss_pred ----------ceeeEEecCCCCEEEEEeecC
Q 004298 223 ----------SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 ----------~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.|.+++|+|++..+++++.++
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 278999999999999887765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-15 Score=169.24 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=117.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-Cc--------eEEEe-cCCCcEEEEEEccCCCE-EEEEEcCCcEEEE
Q 004298 21 ASQIKIAEWNPE-KDLLAMATEDSKILLHRFN-WQ--------RLWTI-SPGKSVTSLCWRPDGKA-IAVGLEDGTITLH 88 (763)
Q Consensus 21 ~~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-~~--------~v~~~-~~~~~V~~l~wspDG~~-Lasg~~Dg~V~lw 88 (763)
.+.|.+++|+|+ +++||+|+.|++|+||++. +. .+..+ .|...|.+++|+|++.. |++|+.||+|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 345999999997 7899999999999999994 22 12223 27788999999999975 5789999999999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee-
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA- 167 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~- 167 (763)
|+++++.+..+. |...|.++.|+|+|..+++++ .|+.+++||++... ......+|.+.. ....+.
T Consensus 154 Dl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s------~D~~IrIwD~Rsg~--~i~tl~gH~g~~-----~s~~v~~ 219 (568)
T PTZ00420 154 DIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC------VGKHMHIIDPRKQE--IASSFHIHDGGK-----NTKNIWI 219 (568)
T ss_pred ECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe------cCCEEEEEECCCCc--EEEEEecccCCc-----eeEEEEe
Confidence 999998887775 567899999999999999887 79999999998631 111222333211 000011
Q ss_pred cccCCCeeEEEEEcCCC----cEEEEEcCc
Q 004298 168 NSSHQRFSILCSGDKDG----SICFNIFGI 193 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG----~I~lw~~~~ 193 (763)
..+.++.+++++++.|+ +|++|+.+.
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 11235556777766554 799999764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=175.03 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=168.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+++|..++|+|....+.++-..|.|.+|+. -+..+-.+. |.++|++++|+|++.++++|++|.+|++|+..+.+++.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 457999999999999999999999999998 444555554 899999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|-+-|..+.|++.-..+.|+| +|.+|++|+..+. +......||.-++ ++..++|..+.++
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSAS------DDQTIrIWNwqsr--~~iavltGHnHYV---------McAqFhptEDlIV 151 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSAS------DDQTIRIWNWQSR--KCIAVLTGHNHYV---------MCAQFHPTEDLIV 151 (1202)
T ss_pred hccccceeEEeeccCCCceEEEcc------CCCeEEEEeccCC--ceEEEEecCceEE---------EeeccCCccceEE
Confidence 999999999999999999999999 9999999998763 2223344666655 6667889889999
Q ss_pred EEcCCCcEEEEEcCceeeeeeee------------------------------c----------ccccccccCCCCCcee
Q 004298 179 SGDKDGSICFNIFGIFPIGKINI------------------------------H----------KFHVAIPNADEQGTCR 218 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~ig~~~i------------------------------~----------~~~~~~~s~~~~~~~~ 218 (763)
++|-|.+|++|+......+.... | ..-.-+.+++.|..++
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 99999999999865432211110 0 0001123788899999
Q ss_pred eec----------------cceeeEEecCCCCEEEEEeecCcc
Q 004298 219 LLN----------------ASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 219 l~~----------------~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
+|. ..|.++-|.|.-..++..++|+.+
T Consensus 232 lWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred EEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccE
Confidence 986 578999999988888888888754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=167.70 Aligned_cols=217 Identities=17% Similarity=0.265 Sum_probs=158.7
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+|+.| |..++|+|++.++++|++|-.|+||+.. ...++++. |-+-|+.+.|++.-..|.++++|.+|+||+..+
T Consensus 49 eHdGp----VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 49 EHDGP----VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred ccCCc----cceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 36666 9999999999999999999999999994 44566665 778999999999999999999999999999999
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCC----cccCCcc---cc-------
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPG----LVSGDTG---FT------- 156 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~----~~s~~~~---~~------- 156 (763)
++++..+++|...|.|..|+|....++|+| -|.++|+||+..- ....++ ...+... ..
T Consensus 125 r~~iavltGHnHYVMcAqFhptEDlIVSaS------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTEDLIVSAS------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccceEEEec------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 999999999999999999999999999999 8999999997541 111111 0011110 00
Q ss_pred ----cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce---eee----------eeeecccccccccCCCCCceee
Q 004298 157 ----DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF---PIG----------KINIHKFHVAIPNADEQGTCRL 219 (763)
Q Consensus 157 ----~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~---~ig----------~~~i~~~~~~~~s~~~~~~~~l 219 (763)
.+.+-.++. .++++...++++|+.|..|++|-+... ... ..-.|...-.+.+.+.|+++|+
T Consensus 199 K~VLEGHDRGVNw--aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNW--AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eeeecccccccce--EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 111222222 245788889999999999999954332 111 1111222223458899999999
Q ss_pred ec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 220 LN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 220 ~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+ .....++-.|.++.++++...+
T Consensus 277 wDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 277 WDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred EecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 98 2345566677766555554444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=163.07 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=130.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
++-|.+++.+|+..++.++++|-.|++|+. .|.....+. |..-|.+++|+| |.+.+|+++-|++|++|.+....+.
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence 667999999999999999999999999997 344444444 778899999999 8889999999999999999999999
Q ss_pred EEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
.++.+|...|+|+.+-+-| .++++|+ +|.++++||..++. ...+..||+.-+ -..+++|..
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsga------DD~tiKvWDyQtk~--CV~TLeGHt~Nv---------s~v~fhp~l 239 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGA------DDLTIKVWDYQTKS--CVQTLEGHTNNV---------SFVFFHPEL 239 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecC------CCceEEEeecchHH--HHHHhhcccccc---------eEEEecCCC
Confidence 9999999999999997654 6899998 89999999998752 112233444333 223578999
Q ss_pred eEEEEEcCCCcEEEEEcCcee
Q 004298 175 SILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~ 195 (763)
.++++|++||++++|...+|.
T Consensus 240 piiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred cEEEEecCCccEEEecCccee
Confidence 999999999999999766553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=177.00 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=144.2
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEEccC----ce---------EEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 23 QIKIAEWNPEKDLLAMAT--EDSKILLHRFNW----QR---------LWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~----~~---------v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.|.+++.+|+|..+|+|+ .||.+.||+... .. +.+. .|.++|+|+.|+|||++||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 399999999999999999 899998999721 11 1111 2778999999999999999999999999
Q ss_pred EEEccC------------------CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 87 LHDVEN------------------GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 87 lwdve~------------------g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
||.-.. .+++..+.+|.+.|..+.|+|++.++++++ .|+++.+|+..+- .....
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s------~DnsViiwn~~tF--~~~~v 166 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS------LDNSVIIWNAKTF--ELLKV 166 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec------ccceEEEEccccc--eeeee
Confidence 998662 135677889999999999999999999999 8999999998763 33333
Q ss_pred ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEE
Q 004298 149 VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVA 228 (763)
Q Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~ 228 (763)
..+|.+++ -...++|-+++|++-+.|++|++|....|.+...- ..++.... -.+ -+.+++
T Consensus 167 l~~H~s~V---------KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I----t~pf~~~~-~~T------~f~RlS 226 (942)
T KOG0973|consen 167 LRGHQSLV---------KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI----TKPFEESP-LTT------FFLRLS 226 (942)
T ss_pred eecccccc---------cceEECCccCeeeeecCCceEEEEEcccceeeEee----ccchhhCC-Ccc------eeeecc
Confidence 44555555 22346788999999999999999986666544321 11111111 111 267899
Q ss_pred ecCCCCEEEEEe
Q 004298 229 LSKDLFHLTVLC 240 (763)
Q Consensus 229 ~SpDg~~Llv~~ 240 (763)
|||||++|++..
T Consensus 227 WSPDG~~las~n 238 (942)
T KOG0973|consen 227 WSPDGHHLASPN 238 (942)
T ss_pred cCCCcCeecchh
Confidence 999999998754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=160.63 Aligned_cols=187 Identities=15% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|..+.|.|+|+.|++|+..|.+.+|+...-..-.+ .|...|+++.|+++|.++++|..+|.|++|+.. -..++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHh
Confidence 4588999999999999999999999999732111111 288999999999999999999999999999965 3444555
Q ss_pred cccC-CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
..|. ..|++++|+|+...++++| +|+++++||........ ..+||.--+ -+..+++...+++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~S------dDg~ikiWdf~~~kee~--vL~GHgwdV---------ksvdWHP~kgLia 238 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCS------DDGTIKIWDFRMPKEER--VLRGHGWDV---------KSVDWHPTKGLIA 238 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEec------CCCeEEEEeccCCchhh--eeccCCCCc---------ceeccCCccceeE
Confidence 5554 8999999999999999998 99999999987643221 112332222 2344677888999
Q ss_pred EEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 179 SGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+|+.|..|++|+-.+-. .-.++..+...|..+.|++++++|+.++.|.
T Consensus 239 sgskDnlVKlWDprSg~-----------------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGS-----------------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EccCCceeEeecCCCcc-----------------hhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 99999999999844321 1112222335689999999999999998776
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-15 Score=151.67 Aligned_cols=187 Identities=22% Similarity=0.267 Sum_probs=141.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|+++++++++.||.|.+|++. ++....+. |...+.++.|+|+++++++++.||.|++|++++++.+..+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 349999999999999999999999999994 44444443 6678889999999999999999999999999998888899
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..|...|.++.|++++..+++++ .++.+++|+....... .....+. ..+..+. ++++..++++
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~--~~~~~~~-------~~i~~~~--~~~~~~~l~~ 152 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSS------RDKTIKVWDVETGKCL--TTLRGHT-------DWVNSVA--FSPDGTFVAS 152 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEec------CCCeEEEEECCCcEEE--EEeccCC-------CcEEEEE--EcCcCCEEEE
Confidence 99999999999999988888886 6999999998732100 0011111 1122233 3455678888
Q ss_pred EcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++.||.|++|+..... ...+. .....+.+++|+|+++.+++++.++
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLT------------------GHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EcCCCcEEEEEccccccceeEe------------------cCccccceEEECCCcCEEEEecCCC
Confidence 8889999999865321 11111 1123578999999998888887654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=146.81 Aligned_cols=192 Identities=17% Similarity=0.145 Sum_probs=149.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC-CcEEEEEEccCCCEEEEEEc--CCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG-KSVTSLCWRPDGKAIAVGLE--DGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~--Dg~V~lwdve~g~~~ 96 (763)
.++|.++.|+++|+++++++.|.++++|+. ++.++.++... -.|..++|-.....+..++. |.+|+..++.+.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 456999999999999999999999999999 77788777643 35777888776666666664 999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+.+.+|...|+.+..+|-+..+.+++ .|+++++||++.+...-.-...+ . ...+++|.+-+
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S------~D~tvrLWDlR~~~cqg~l~~~~-~------------pi~AfDp~GLi 154 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSS------LDKTVRLWDLRVKKCQGLLNLSG-R------------PIAAFDPEGLI 154 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecc------cCCeEEeeEecCCCCceEEecCC-C------------cceeECCCCcE
Confidence 99999999999999999999999998 89999999999532221111111 1 11356799999
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+|+|...+.|++|+.++|.-|.+....... +. ......+.|||||+++++.+..+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--------~~----~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITD--------ND----EAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCC--------CC----ccceeeeEEcCCCCEEEEEeCCC
Confidence 999998889999999988666554322110 11 12356899999999999998766
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-16 Score=156.26 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=160.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l 99 (763)
.|+.+-|+|+-.++|+++.|++|++|+. +|+....+. |.+.|..|+|+..|+++|+++.|-.+++||.++ .++++.+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~ 189 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL 189 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh
Confidence 4999999999999999999999999999 888766665 777899999999999999999999999999986 5677778
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+|...|.++.|-|.|.++++++ .|.+++.|+..+. ...+++ +..++ -......++.++
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~s------rD~tik~We~~tg~cv~t~~~----h~ewv---------r~v~v~~DGti~ 250 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCS------RDNTIKAWECDTGYCVKTFPG----HSEWV---------RMVRVNQDGTII 250 (406)
T ss_pred cCcccceeeEEEEecCCeeeecc------cccceeEEecccceeEEeccC----chHhE---------EEEEecCCeeEE
Confidence 89999999999999999999998 9999999998864 222222 22222 122356889999
Q ss_pred EEEcCCCcEEEEEcCce------eeeeeeec--------------cccc------ccccCCCCCceeeec----------
Q 004298 178 CSGDKDGSICFNIFGIF------PIGKINIH--------------KFHV------AIPNADEQGTCRLLN---------- 221 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~------~ig~~~i~--------------~~~~------~~~s~~~~~~~~l~~---------- 221 (763)
++++.|.++++|..... ..+..++. ...+ ...+++.|+++|+|+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 99999999999975543 11111110 0000 123566789999998
Q ss_pred ----cceeeEEecCCCCEEEEEeecC
Q 004298 222 ----ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ----~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|..++|+|-|++|+.++.|+
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCC
Confidence 4689999999999999998887
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=159.30 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=141.8
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc----eEEEec--CC--CcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 16 FDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ----RLWTIS--PG--KSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~----~v~~~~--~~--~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
..|..-+.+++-+|+|.. ..+.+++.||++++|+++.. .|.... .+ -.++..+|+|||+.||.|+.||.|.
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 334444669999999966 67889999999999999432 233322 22 2578999999999999999999999
Q ss_pred EEEccCCe---EEEEecccCC--ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 87 LHDVENGK---LLRSLKSHTV--AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 87 lwdve~g~---~~~~l~~h~~--~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
+|+..+.. ..+.-+.|.. .|+||.|+++|+++++-+ .|.++++||++.....+.... +...
T Consensus 343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLKvWDLrq~kkpL~~~t--------gL~t 408 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLKVWDLRQFKKPLNVRT--------GLPT 408 (641)
T ss_pred eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCceeeeeccccccchhhhc--------CCCc
Confidence 99975321 2233346766 899999999999999988 899999999987533332111 1112
Q ss_pred cccceecccCCCeeEEEEEc------CCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCC
Q 004298 162 SFRELANSSHQRFSILCSGD------KDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLF 234 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs------~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~ 234 (763)
.+....++++|+..++++|+ ..|++.+|+.-.|. +.++.+. +++|..+.|.|-.+
T Consensus 409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------------------~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------------------TASVVRCLWHPKLN 470 (641)
T ss_pred cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC------------------CceEEEEeecchhh
Confidence 23344567788989999997 34666766644442 2233221 35688999999999
Q ss_pred EEEEEeecCcc
Q 004298 235 HLTVLCSGQLS 245 (763)
Q Consensus 235 ~Llv~~~d~l~ 245 (763)
++++++.++..
T Consensus 471 Qi~~gsgdG~~ 481 (641)
T KOG0772|consen 471 QIFAGSGDGTA 481 (641)
T ss_pred heeeecCCCce
Confidence 99999888744
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-15 Score=162.07 Aligned_cols=214 Identities=20% Similarity=0.287 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
...|+++.|+|+|..||+|..+|.|.||+. +-.++-.+. |...|-+++|+ +..+.+|+.||.|..+|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 345999999999999999999999999998 334444443 67899999998 6789999999999999999876655
Q ss_pred E-ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 S-LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~-l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
. +.+|...|..+.|++++.++++|+ .|+.+.+||.....+. .....| .+.+..+.|++... ++
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGg------nDN~~~Iwd~~~~~p~--~~~~~H-------~aAVKA~awcP~q~-~l 358 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGG------NDNVVFIWDGLSPEPK--FTFTEH-------TAAVKALAWCPWQS-GL 358 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCC------CccceEeccCCCcccc--EEEecc-------ceeeeEeeeCCCcc-Cc
Confidence 4 889999999999999999999999 8999999998542222 122233 34456677887666 58
Q ss_pred EEEEc--CCCcEEEEEcCc-eeeeeeeecc----cccc-----c--ccCCCCCceeeec--------------cceeeEE
Q 004298 177 LCSGD--KDGSICFNIFGI-FPIGKINIHK----FHVA-----I--PNADEQGTCRLLN--------------ASIYKVA 228 (763)
Q Consensus 177 L~sgs--~DG~I~lw~~~~-~~ig~~~i~~----~~~~-----~--~s~~~~~~~~l~~--------------~~I~~v~ 228 (763)
||+|+ .|++|++|+... -.+..++... +... + ..+-.+..+.+|. ..|..++
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA 438 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence 88875 799999997432 1222221110 1000 1 1233455677776 4689999
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
+||||..+++++.|. +++++.+-.
T Consensus 439 ~SPdg~~i~t~a~DE------------Tlrfw~~f~ 462 (484)
T KOG0305|consen 439 LSPDGETIVTGAADE------------TLRFWNLFD 462 (484)
T ss_pred ECCCCCEEEEecccC------------cEEeccccC
Confidence 999999999998876 666765443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=148.47 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=144.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+..+.|+|+++++++++.+|.|.+|++.. +.+..+. +...|.++.|+|+++++++++.||.|++||+++++....+.
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 478999999999999999999999999954 5555554 56689999999999999999989999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.|...|.++.|+|++.++++++ .++.+++||...... ......+. ..+..+ .+.++++.++++
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~d~~~~~~--~~~~~~~~-------~~i~~~--~~~~~~~~l~~~ 195 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSS------QDGTIKLWDLRTGKC--VATLTGHT-------GEVNSV--AFSPDGEKLLSS 195 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEc------CCCcEEEEEcccccc--ceeEecCc-------cccceE--EECCCcCEEEEe
Confidence 9999999999999988888886 699999999874211 11111111 112223 344666778888
Q ss_pred cCCCcEEEEEcCce-eeeeeeeccc----------ccccccCCCCCceeeec--------------cceeeEEecCCCCE
Q 004298 181 DKDGSICFNIFGIF-PIGKINIHKF----------HVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFH 235 (763)
Q Consensus 181 s~DG~I~lw~~~~~-~ig~~~i~~~----------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~ 235 (763)
+.+|.|++|+.... ....+..+.. ..-..+++.++.+++|+ ..|.+++|+|+++.
T Consensus 196 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (289)
T cd00200 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275 (289)
T ss_pred cCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCE
Confidence 88999999987642 1122211110 00111222355566655 24666777777777
Q ss_pred EEEEeecC
Q 004298 236 LTVLCSGQ 243 (763)
Q Consensus 236 Llv~~~d~ 243 (763)
+++++.++
T Consensus 276 l~~~~~d~ 283 (289)
T cd00200 276 LASGSADG 283 (289)
T ss_pred EEEecCCC
Confidence 66665543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-14 Score=143.10 Aligned_cols=239 Identities=17% Similarity=0.244 Sum_probs=161.9
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.+.|....|..+.|+|.++.|++++.||++++|+...+ ....++++.++.+.+|.++ ..+++|+.||.|+.+|+.++
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC
Confidence 344555577999999999998889999999999999554 3345679999999999984 57899999999999999977
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc---------ccCCccccc-------
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL---------VSGDTGFTD------- 157 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~---------~s~~~~~~~------- 157 (763)
+.. .+-.|..+|.||...+....+++|+ +|+++++||.+.+....... ..++.-.+.
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~~vIsgs------WD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVGCVISGS------WDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVL 158 (323)
T ss_pred cce-eeccCCCceEEEEeeccCCeEEEcc------cCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEE
Confidence 654 4557999999999998878888998 99999999998531111000 000000000
Q ss_pred --------------CC--cccccceecccCCCeeEEEEEcCCCcEEEEEcCc------------------------eeee
Q 004298 158 --------------DS--EDSFRELANSSHQRFSILCSGDKDGSICFNIFGI------------------------FPIG 197 (763)
Q Consensus 158 --------------~~--~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~------------------------~~ig 197 (763)
.+ ...+.++.. -|++.=.++++-||.|.+=.++. +++.
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~--~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN 236 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVAL--VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN 236 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEE--ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence 00 001111221 23333466667777776542221 2344
Q ss_pred eeeecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 198 KINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 198 ~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
.+..|.....+.+++.||.+-+|+ .+|.+++||.||..|+++++-.--....+......+++..+.
T Consensus 237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~ 316 (323)
T KOG1036|consen 237 AIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLT 316 (323)
T ss_pred eeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecc
Confidence 455555555567999999999998 469999999999999998774322222223334456655543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-16 Score=162.06 Aligned_cols=199 Identities=19% Similarity=0.211 Sum_probs=150.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g 93 (763)
|.++ |..++|+++|..+.+++.|+.|++|+. +|+.+..+..+..++|+.|+||+ +.+++|+.|+.|+.||+++|
T Consensus 257 H~k~----Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 257 HRKP----VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred chhh----hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 5566 999999999999999999999999999 89999999999999999999998 89999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC----------CCC---CcccCCcccccCCc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP----------QMP---GLVSGDTGFTDDSE 160 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~----------~l~---~~~s~~~~~~~~~~ 160 (763)
++++.+..|-+.|..+.|-++|+.+++.+ +|+++++|+...+.+ .+| .+..+..-......
T Consensus 333 kvvqeYd~hLg~i~~i~F~~~g~rFissS------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 333 KVVQEYDRHLGAILDITFVDEGRRFISSS------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred HHHHHHHhhhhheeeeEEccCCceEeeec------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 99999999999999999999999999998 899999997653211 011 00000000000000
Q ss_pred ------------------------ccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCc
Q 004298 161 ------------------------DSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGT 216 (763)
Q Consensus 161 ------------------------~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~ 216 (763)
..=..+...+++++.+|++|+.||.+.+|++..-..- +.
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~-----------------~~ 469 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV-----------------SK 469 (503)
T ss_pred ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh-----------------hc
Confidence 0011244567899999999999999999996653221 11
Q ss_pred eeeeccceeeEEecCCCCEEEEEee
Q 004298 217 CRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 217 ~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++.+++++..+.|.|-...-++.|.
T Consensus 470 lkah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred cccCCcceEEEEecCCCcceeEecc
Confidence 2223356777888887666555543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=146.53 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=137.6
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc--cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF--NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.+..++||+.. +.+++++.||++++|++ ...++..++ |..+|.++.|++ +++.+.+++.||+|+||+..-++.+
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 458899999965 77888999999999997 445666665 889999999999 7778888999999999999989999
Q ss_pred EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.++.+|.+.|....|+|.. ..++++| .|++.++||.+.+-..+. ...|. ..+.+..|+. -+.+
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~S------gd~~l~lwdvr~~gk~~~--i~ah~-------~Eil~cdw~k-y~~~ 204 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASAS------GDGTLRLWDVRSPGKFMS--IEAHN-------SEILCCDWSK-YNHN 204 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEcc------CCceEEEEEecCCCceeE--EEecc-------ceeEeecccc-cCCc
Confidence 9999999999999999965 5778887 899999999876421111 11111 1122222322 3457
Q ss_pred EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 176 ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++|+.|+.|+.|+.......-..+.. + .-.|..+.|||--..+++.++
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL~g---h-------------~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFELNG---H-------------GLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred EEEecCCCceEEEEehhhccccceeecC---C-------------ceEEEEEecCcchhhHhhhcc
Confidence 9999999999999998876533222111 0 124667777776555555443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-15 Score=151.25 Aligned_cols=215 Identities=17% Similarity=0.164 Sum_probs=152.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---EEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---LWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.++|+-+.|||+|++||+++.|.+..+|.. .-.+ ..++ .|..+|..+.||||.++|++++.|..+++||+.+|..
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence 367999999999999999999999999998 3222 1222 2778999999999999999999999999999999999
Q ss_pred EEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC---------CCCC---cccCCcccc---c--
Q 004298 96 LRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP---------QMPG---LVSGDTGFT---D-- 157 (763)
Q Consensus 96 ~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~---------~l~~---~~s~~~~~~---~-- 157 (763)
.+.+.. |...+.+++|.|||..+++|+ .|+++..||...... ++.. +..|..... +
T Consensus 304 ~~~y~~~~~~S~~sc~W~pDg~~~V~Gs------~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 304 RHLYPSGLGFSVSSCAWCPDGFRFVTGS------PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred hhhcccCcCCCcceeEEccCCceeEecC------CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 988753 357899999999999999998 789999998764210 0000 001110000 0
Q ss_pred ---------------CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce---------eeeeeeeccc-----cccc
Q 004298 158 ---------------DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF---------PIGKINIHKF-----HVAI 208 (763)
Q Consensus 158 ---------------~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~---------~ig~~~i~~~-----~~~~ 208 (763)
..+..+ ...+.+.++++.++.-.+..|++|++.-. .-+.+-++.. ..-+
T Consensus 378 i~l~~~e~~~dr~lise~~~i--ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPI--TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred eeeechhhhhhhccccccCce--eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 001111 22334567778888888999999976431 1122222211 1123
Q ss_pred ccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 209 PNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 209 ~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|+.|+.+.+|| ..|.+++|+|...++++.++|+
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 5788889999998 4688999999888888877654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=145.91 Aligned_cols=215 Identities=17% Similarity=0.300 Sum_probs=159.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|+++.||-+|.+||+|..+|.|.||.. ++...|.+. ....+.=++|+|-+.+|+.|+.||.|..|.+.++...+.+.
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 4999999999999999999999999999 777888886 66778889999999999999999999999999988889999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC--CCC--------C---cccCCccccc----------
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMP--------G---LVSGDTGFTD---------- 157 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~--------~---~~s~~~~~~~---------- 157 (763)
+|+.+++|=.|.|+|+.+.++. .|+++++|+..+..+ ++. . ...+.+.+..
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGY------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred CCCCCcccccccCCCceEEEEe------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 9999999999999999999996 899999999865211 110 0 0001000000
Q ss_pred -------------------CCccccccee-cccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeeccc---------cccc
Q 004298 158 -------------------DSEDSFRELA-NSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKF---------HVAI 208 (763)
Q Consensus 158 -------------------~~~~~~~~~~-~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~---------~~~~ 208 (763)
+.+....++. ..++....+.++|+-||+|.||++.......+-.+.. ....
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l 341 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYL 341 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchh
Confidence 0001111111 1123456789999999999999876653322221111 1223
Q ss_pred ccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 209 PNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 209 ~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.++..++.++.|+ ..|.+++++||.+.++.++.|.
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred eeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 4667788999998 3699999999988888776554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-14 Score=142.59 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=125.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++.+|+.+++|+|+.|..-.+|++ +|..+..+. |+..|+++.|+.||.+||+|..+|.|+||.+.+|.....+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 34999999999999999999999999999 666555554 8999999999999999999999999999999999999888
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
...-..|.=+.|+|.+..++.|+ .||.+-+|.+..+ ......+|+.... ..-.+.|+++.+++
T Consensus 145 ~~e~~dieWl~WHp~a~illAG~------~DGsvWmw~ip~~--~~~kv~~Gh~~~c---------t~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHPRAHILLAGS------TDGSVWMWQIPSQ--ALCKVMSGHNSPC---------TCGEFIPDGKRILT 207 (399)
T ss_pred ecccCceEEEEecccccEEEeec------CCCcEEEEECCCc--ceeeEecCCCCCc---------ccccccCCCceEEE
Confidence 75557788899999999999998 8999999988763 1112233443332 22234577999999
Q ss_pred EcCCCcEEEEE
Q 004298 180 GDKDGSICFNI 190 (763)
Q Consensus 180 gs~DG~I~lw~ 190 (763)
|..||+|++|+
T Consensus 208 gy~dgti~~Wn 218 (399)
T KOG0296|consen 208 GYDDGTIIVWN 218 (399)
T ss_pred EecCceEEEEe
Confidence 99999999995
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=140.09 Aligned_cols=220 Identities=15% Similarity=0.182 Sum_probs=145.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEe---cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTI---SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~---~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+|.+++|+.+|..+|+|+.|+++.+|++...+. ... .|+..|-.++|+| ....+|+++.|.+|++||++.+++++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 499999999999999999999999999954432 222 2677899999998 66799999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-----------ccCCccccc-C-------
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-----------VSGDTGFTD-D------- 158 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-----------~s~~~~~~~-~------- 158 (763)
.+.. ...-.-+.|+|+|.+++.++ .|..+.+.|.+......... .+.+--|.+ +
T Consensus 102 ~i~~-~~eni~i~wsp~g~~~~~~~------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL 174 (313)
T KOG1407|consen 102 RIET-KGENINITWSPDGEYIAVGN------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL 174 (313)
T ss_pred Eeec-cCcceEEEEcCCCCEEEEec------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence 8865 34445688999999999988 78888888776521100000 000000000 0
Q ss_pred -----------CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeE
Q 004298 159 -----------SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKV 227 (763)
Q Consensus 159 -----------~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v 227 (763)
..-..++++..++|.++++++|+.|..+.+|+.+-..+-+. +.-.+-+|..+
T Consensus 175 sypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~-----------------isRldwpVRTl 237 (313)
T KOG1407|consen 175 SYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC-----------------ISRLDWPVRTL 237 (313)
T ss_pred eccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee-----------------eccccCceEEE
Confidence 00112234444556666666666666666665443221110 11112478999
Q ss_pred EecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 228 ALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 228 ~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
+||.||++|+.+++|..++- .....+..++-++.+.+.+
T Consensus 238 SFS~dg~~lASaSEDh~IDI-A~vetGd~~~eI~~~~~t~ 276 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDI-AEVETGDRVWEIPCEGPTF 276 (313)
T ss_pred EeccCcceeeccCccceEEe-EecccCCeEEEeeccCCce
Confidence 99999999999998876532 1233455677776665544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=153.73 Aligned_cols=205 Identities=13% Similarity=0.168 Sum_probs=144.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEE-Ee-cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLW-TI-SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~-~~-~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.++.|..||.++|.|...|.|+||+.+...+. .+ .|..+|..+.|+| |++.+++|++|+.+++||+.++.....+
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 3999999999999999999999999996543222 22 2778999999999 5668888889999999999998886689
Q ss_pred cccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
.+|++.|.|.+|+|... .++||+ .|++||+||.+...........+. .+..+. +-+.+..++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGs------YDg~vrl~DtR~~~~~v~elnhg~---------pVe~vl--~lpsgs~ia 212 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGS------YDGKVRLWDTRSLTSRVVELNHGC---------PVESVL--ALPSGSLIA 212 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecC------CCceEEEEEeccCCceeEEecCCC---------ceeeEE--EcCCCCEEE
Confidence 99999999999999765 678888 899999999986422221111111 111121 224555666
Q ss_pred EEcCCCcEEEEEcCc--ee----------eeeeeecccccccccCCCCCceeeec-------------cceeeEEecCCC
Q 004298 179 SGDKDGSICFNIFGI--FP----------IGKINIHKFHVAIPNADEQGTCRLLN-------------ASIYKVALSKDL 233 (763)
Q Consensus 179 sgs~DG~I~lw~~~~--~~----------ig~~~i~~~~~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg 233 (763)
+++ ...|++|+.-. .. +-+..+........+++-|+.+++++ ++|.+++.|||+
T Consensus 213 sAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 213 SAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDD 291 (487)
T ss_pred EcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCC
Confidence 655 45677776331 11 11111111112234566666666654 689999999999
Q ss_pred CEEEEEeecCcc
Q 004298 234 FHLTVLCSGQLS 245 (763)
Q Consensus 234 ~~Llv~~~d~l~ 245 (763)
+.++++.+++++
T Consensus 292 ~t~viGmsnGlv 303 (487)
T KOG0310|consen 292 QTVVIGMSNGLV 303 (487)
T ss_pred ceEEEeccccee
Confidence 999999888754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=146.23 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=145.1
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc------------------eE-EEe-cCCCcEEEEEEccCC
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ------------------RL-WTI-SPGKSVTSLCWRPDG 73 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~------------------~v-~~~-~~~~~V~~l~wspDG 73 (763)
..|..+ +.+.+|||||.++|+|+.|..|+|.+...- ++ .++ .|.++|+++.|+|..
T Consensus 109 t~HK~~----cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 109 TSHKSP----CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eecccc----eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345555 999999999999999999999999997410 11 121 266789999999999
Q ss_pred CEEEEEEcCCcEEEEEccCCeEEEEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCC-ccc
Q 004298 74 KAIAVGLEDGTITLHDVENGKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-LVS 150 (763)
Q Consensus 74 ~~Lasg~~Dg~V~lwdve~g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-~~s 150 (763)
+.|++|+.|++|+++|.......+.++ ....+|.+++|+|.|.++..|. +-.++++||+.+...-... ...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT------dHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT------DHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec------CCCceeEEeccceeEeeecCccc
Confidence 999999999999999987543332222 2346899999999999999987 6788999998863211111 112
Q ss_pred CCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEe
Q 004298 151 GDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVAL 229 (763)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~ 229 (763)
+++..+ .+...++.+++.++|+.||.|++|+--+-.+ .++. -..++ +.|.+..|
T Consensus 259 qht~ai---------~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------~AH~g---------sevcSa~F 313 (430)
T KOG0640|consen 259 QHTGAI---------TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-------NAHGG---------SEVCSAVF 313 (430)
T ss_pred ccccce---------eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-------hhcCC---------ceeeeEEE
Confidence 333322 2334568889999999999999997221111 1110 00111 35788999
Q ss_pred cCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 230 SKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 230 SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
+.||++++..+.|. .+++|.+-++
T Consensus 314 tkn~kyiLsSG~DS------------~vkLWEi~t~ 337 (430)
T KOG0640|consen 314 TKNGKYILSSGKDS------------TVKLWEISTG 337 (430)
T ss_pred ccCCeEEeecCCcc------------eeeeeeecCC
Confidence 99999999887766 6677776654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=148.80 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=130.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.++.|=|.|+.+++++.|.+|+.|++ +|-.+.++. |.+.|..++.+.||..+|+++.|.+|++|-+.++++...++
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 3999999999999999999999999999 788888886 77899999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCC---------------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 101 SHTVAVVCLNWEEDA---------------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~---------------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
.|+-+|.|++|.|.. +++.+++ .|++|++||+... .+.-...+|...+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S------rDktIk~wdv~tg--~cL~tL~ghdnwV--------- 337 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS------RDKTIKIWDVSTG--MCLFTLVGHDNWV--------- 337 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeec------ccceEEEEeccCC--eEEEEEeccccee---------
Confidence 999999999999853 2344444 8999999999864 2222233444443
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCcee
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
-...+++.|++|+++..|+++++|++....
T Consensus 338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred eeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 223467899999999999999999976543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=162.24 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=128.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
|+|. |.+++.+|+..++|+|+.|.+.+||++. .+..-.+. |...|.|+.|+|..+.+|+++.|++|+||.+++.
T Consensus 462 HdKd----IN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 462 HDKD----INCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred hccc----ccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence 7777 9999999999999999999999999995 44444554 8889999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.++.++.+|+..|..+.|-.++..++|++ .||.+++|+..+.-. ......|.. .+..+. ..+.
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~------adGliKlWnikt~eC--~~tlD~H~D-------rvWaL~--~~~~ 600 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAG------ADGLIKLWNIKTNEC--EMTLDAHND-------RVWALS--VSPL 600 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEecc------CCCcEEEEeccchhh--hhhhhhccc-------eeEEEe--ecCc
Confidence 99999999999999999999999999988 899999999987421 112222222 222222 3466
Q ss_pred eeEEEEEcCCCcEEEEE
Q 004298 174 FSILCSGDKDGSICFNI 190 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~ 190 (763)
.+.+++|+.||.|.+|-
T Consensus 601 ~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEecCCCeEEEEee
Confidence 67899999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=152.65 Aligned_cols=207 Identities=11% Similarity=0.135 Sum_probs=166.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+.+|+++.++|+...+.++-.+|.|.||+.+.|. +..+. ...+|++..|-+--+.+++|++|..|++|+..+++-++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~ 92 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT 92 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE
Confidence 4579999999999999999999999999996554 44454 567889999999889999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-CeeEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L 177 (763)
+..|.+-|.|++.+|...++.++| +|-++++|+-.... .+...+.||..++ ++.+++| +.+.+
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsS------DDm~iKlW~we~~w-a~~qtfeGH~HyV---------Mqv~fnPkD~ntF 156 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSS------DDMTIKLWDWENEW-ACEQTFEGHEHYV---------MQVAFNPKDPNTF 156 (794)
T ss_pred eeccccceeeeeecCCCCeEEecC------CccEEEEeeccCce-eeeeEEcCcceEE---------EEEEecCCCccce
Confidence 999999999999999999999999 89999999987642 2334456676665 4444443 44789
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeeccc------------ccccccCCCCCceeeec--------------cceeeEEec
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKF------------HVAIPNADEQGTCRLLN--------------ASIYKVALS 230 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~------------~~~~~s~~~~~~~~l~~--------------~~I~~v~~S 230 (763)
++++-|++|++|.++.. +.-++.-|.. .+...+++.|.++++|+ ..|..++|.
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence 99999999999988764 2222222211 12235788889999998 468889999
Q ss_pred CCCCEEEEEeecC
Q 004298 231 KDLFHLTVLCSGQ 243 (763)
Q Consensus 231 pDg~~Llv~~~d~ 243 (763)
|....++.+++|+
T Consensus 237 p~lpiiisgsEDG 249 (794)
T KOG0276|consen 237 PELPIIISGSEDG 249 (794)
T ss_pred CCCcEEEEecCCc
Confidence 9988888888877
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=155.91 Aligned_cols=199 Identities=15% Similarity=0.177 Sum_probs=153.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc------C--ceEEEecC------CCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN------W--QRLWTISP------GKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~------~--~~v~~~~~------~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.+.|+.++.+||+..+++|+.|.+|++|++. | .++..+.| ...|.|+.+||||++||+|--|++|+
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 3459999999999999999999999999972 2 23344443 35799999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+|-+.+-+..-++-+|.-||.||..+||+..+++|| .|+++++|-..- .. .|.++. ..++++..+
T Consensus 534 VyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS------ADKnVKiWGLdF--GD------CHKS~f-AHdDSvm~V 598 (888)
T KOG0306|consen 534 VYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS------ADKNVKIWGLDF--GD------CHKSFF-AHDDSVMSV 598 (888)
T ss_pred EEEecceeeeeeecccccceeEEeccCCcCeEEecc------CCCceEEecccc--ch------hhhhhh-cccCceeEE
Confidence 999999999999999999999999999999999999 899999996642 11 122222 112233333
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccc
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
. +-|+...+.+++.||.|+-|+-..|..-.. +.-++..|++++.+|+|.+++.++.|.
T Consensus 599 ~--F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-----------------L~~H~~ev~cLav~~~G~~vvs~shD~--- 656 (888)
T KOG0306|consen 599 Q--FLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-----------------LDGHHSEVWCLAVSPNGSFVVSSSHDK--- 656 (888)
T ss_pred E--EcccceeEEEecCcceEEeechhhhhhhee-----------------eccchheeeeeEEcCCCCeEEeccCCc---
Confidence 3 345667899999999999998776643221 112235688999999999999887766
Q ss_pred cccCCCCCCcEEEEEeecc
Q 004298 247 EELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld~~ 265 (763)
.|.++..+-.
T Consensus 657 ---------sIRlwE~tde 666 (888)
T KOG0306|consen 657 ---------SIRLWERTDE 666 (888)
T ss_pred ---------eeEeeeccCc
Confidence 6777765543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=160.15 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=120.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|.+++|+|++ ++||+++.|++|+||++ +++.+..+. |...|.+++|+|||++|++|+.||+|+|||+++++.+..
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 459999999986 79999999999999999 566666665 778899999999999999999999999999999999999
Q ss_pred ecccCCc-eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVA-VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~-V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|.+. +..+.|.+++..+++++.+ ...|+.+++||.+........ ...+... ......+++++++|
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~Dr~VklWDlr~~~~p~~~-~~~d~~~--------~~~~~~~d~d~~~L 274 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCS--KSQQRQIMLWDTRKMASPYST-VDLDQSS--------ALFIPFFDEDTNLL 274 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecC--CCCCCeEEEEeCCCCCCceeE-eccCCCC--------ceEEEEEcCCCCEE
Confidence 9888764 4577899987777654311 125899999998753211110 0001000 01122345667778
Q ss_pred EEEc-CCCcEEEEEcCc
Q 004298 178 CSGD-KDGSICFNIFGI 193 (763)
Q Consensus 178 ~sgs-~DG~I~lw~~~~ 193 (763)
++|+ .||+|++|++..
T Consensus 275 ~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEEeCCCeEEEEEeeC
Confidence 8777 599999998654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-14 Score=158.32 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=118.5
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDL-LAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++.. +|+++.|++|+||++ +++.+..+.+...|.+++|+|||++|++++.|+.|+|||+++++.+.++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 45999999999865 578999999999999 6777777777788999999999999999999999999999999999999
Q ss_pred cccCCceeEE-----EeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc-cCCC
Q 004298 100 KSHTVAVVCL-----NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS-SHQR 173 (763)
Q Consensus 100 ~~h~~~V~~l-----~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~-~~~~ 173 (763)
.+|.+.+.+. .|++++.++++++.+- ..++++++||.+.....+. ....+. ....+... ..+.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--~~~R~VkLWDlr~~~~pl~-~~~ld~--------~~~~L~p~~D~~t 274 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSK--NNMREMKLWDLKNTTSALV-TMSIDN--------ASAPLIPHYDEST 274 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCC--CCccEEEEEECCCCCCceE-EEEecC--------CccceEEeeeCCC
Confidence 9998765433 3457888887765110 0235899999885222111 001010 00111111 2355
Q ss_pred eeEEEEEcCCCcEEEEEcCc
Q 004298 174 FSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~ 193 (763)
+.++++|+.|++|++|.+..
T Consensus 275 g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCEEEEEECCCeEEEEEccC
Confidence 77899999999999998653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=136.84 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=139.6
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEccCceEEEe-----cCCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFNWQRLWTI-----SPGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~~~~v~~~-----~~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~ 92 (763)
++|..++|-. -|.+||+++.||.|.||+-.++ -|+- .|...|++++|.|. |-.||+|++||.|.|.+..+
T Consensus 57 GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 57 GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred CCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 4499999964 6899999999999999998544 3332 27789999999994 56899999999999999864
Q ss_pred C-e-E-EEEecccCCceeEEEeecC---C-----------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 93 G-K-L-LRSLKSHTVAVVCLNWEED---A-----------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 93 g-~-~-~~~l~~h~~~V~~l~ws~~---~-----------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
. . . .+....|.-.|++++|.|. | +.+++|+ -|..+++|......-.+.....+|+.+
T Consensus 136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG------cDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG------CDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC------CccceeeeecCCcchhhhhhhhhcchh
Confidence 3 2 2 2335679999999999996 3 3477777 799999998776433333335566666
Q ss_pred ccCCcccccceecccCC--CeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 156 TDDSEDSFRELANSSHQ--RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~--~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
+ +.+.|++.. ....|++++.||++.||..+ ...+.... ..+.-+...+.+++||..|
T Consensus 210 V-------RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e~wk~-------------tll~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 210 V-------RDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYEPWKK-------------TLLEEFPDVVWRVSWSLSG 268 (299)
T ss_pred h-------hhhhhccccCCCceeeEEecCCCcEEEEEec-CccCcccc-------------cccccCCcceEEEEEeccc
Confidence 6 234444432 23689999999999999755 22222211 0111123458899999999
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
+.|.+.+.+.
T Consensus 269 n~LaVs~GdN 278 (299)
T KOG1332|consen 269 NILAVSGGDN 278 (299)
T ss_pred cEEEEecCCc
Confidence 9999887654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=146.84 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=131.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|.+.|.|+++.|-.++|++|+.|++++|||+.+|++..++.+|-..|..+++++...++.+++ +|+.++.||+.
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g------edk~VKCwDLe 223 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG------EDKQVKCWDLE 223 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec------CCCeeEEEech
Confidence 668999999999999999999999999999999999999999999999999999999999998 99999999987
Q ss_pred CCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeec----------cccccc
Q 004298 140 PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIH----------KFHVAI 208 (763)
Q Consensus 140 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~----------~~~~~~ 208 (763)
.. +...+..||-+-+ .+...+|..++|++|+.|.++++|+.+.. .+....-| ...+..
T Consensus 224 ~n--kvIR~YhGHlS~V---------~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 224 YN--KVIRHYHGHLSGV---------YCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred hh--hhHHHhcccccee---------EEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 63 2222233333322 23446788899999999999999987753 23332222 223345
Q ss_pred ccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 209 PNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 209 ~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+++-|+++++|+ .++.++++.|....++.++.|.
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN 341 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc
Confidence 6888999999998 3677888888766666655554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=138.07 Aligned_cols=195 Identities=13% Similarity=0.057 Sum_probs=150.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-C--------------------------------------
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-P-------------------------------------- 60 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~-------------------------------------- 60 (763)
.+.|..+.|.++++.+++++.|.+|..|+. +|+++.+.+ |
T Consensus 90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred cceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 355999999999999999999999999999 776554432 1
Q ss_pred ----CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 61 ----GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 61 ----~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
.-++++++|..++..+.+|+-|+.|++||++.+...+.+++|.++|+.+..+++|.++.+-+ .|.++++|
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns------Md~tvrvw 243 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS------MDNTVRVW 243 (338)
T ss_pred ccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc------ccceEEEE
Confidence 11378999999999999999999999999999999999999999999999999999988887 89999999
Q ss_pred CCCCCCCCCC--CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCC
Q 004298 137 PPAPRIPQMP--GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQ 214 (763)
Q Consensus 137 d~~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~ 214 (763)
|.++..+.-. ..+.++. .....+.+.++++++...+..|+.|..+++|+.....+- +.+ |+
T Consensus 244 d~rp~~p~~R~v~if~g~~-----hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l-ykl---pG-------- 306 (338)
T KOG0265|consen 244 DVRPFAPSQRCVKIFQGHI-----HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL-YKL---PG-------- 306 (338)
T ss_pred EecccCCCCceEEEeecch-----hhhhhhcceeeccCCCCccccccccceEEEeecccccEE-EEc---CC--------
Confidence 9998543322 1111211 123344566677888889999999999999984432111 111 11
Q ss_pred CceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 215 GTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 215 ~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.++|..+.|+|.-..++.+.+|+
T Consensus 307 -----h~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 307 -----HYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred -----cceeEEEeeecCCCcEEEEeccCc
Confidence 125688999999988888777765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-14 Score=139.33 Aligned_cols=191 Identities=17% Similarity=0.261 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
-.++.||+-|+++|+|..||.|.||++...++..+- |-.+|++++||+||++|.+++.|..|.+||+..|.+++.++-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 578999999999999999999999999655555443 778999999999999999999999999999999999999875
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC-CCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA-PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~-~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.++|+...|+|..+..+... ..+....+.+.. ++...++....++...+ .-...++..++++++|
T Consensus 106 -~spv~~~q~hp~k~n~~va~-----~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s--------as~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVAT-----IMEESPVVIDFSDPKHSVLPKDDDGDLNSS--------ASHGVFDRRGKYIITG 171 (405)
T ss_pred -cCccceeeeccccCCeEEEE-----EecCCcEEEEecCCceeeccCCCccccccc--------cccccccCCCCEEEEe
Confidence 78999999999764322221 011111221111 11111221111111111 0011356889999999
Q ss_pred cCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCcc
Q 004298 181 DKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 181 s~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
+..|.+.+++..++.+ +++.+.. -..|.++-++..|..+++-++|.++
T Consensus 172 tsKGkllv~~a~t~e~vas~rits-----------------~~~IK~I~~s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITS-----------------VQAIKQIIVSRKGRFLIINTSDRVI 220 (405)
T ss_pred cCcceEEEEecchheeeeeeeech-----------------heeeeEEEEeccCcEEEEecCCceE
Confidence 9999999999887743 2222211 0357789999999999999887733
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=138.08 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=150.2
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 11 PFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
++.++|..- |.+++|+.|.+.|.+|+.+..++||+++.. +...+. |.+.|..+-|....+.|.++..|++||+
T Consensus 94 lhsf~hkhi----vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 94 LHSFEHKHI----VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred hhhhhhhhe----eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 444555433 999999999999999999999999998532 223332 6778999999998899999999999999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
||..+|+.++++.. ..+|+++..+++|+++..+ ..+.++|||...- ..+...... .+.-+
T Consensus 170 WD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf-~~lKs~k~P-----------~nV~S 229 (334)
T KOG0278|consen 170 WDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSF-GLLKSYKMP-----------CNVES 229 (334)
T ss_pred EEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-------cCceeEEeccccc-cceeeccCc-----------ccccc
Confidence 99999999999864 7899999999999988776 4788999998751 111110000 00111
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccc
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
.+.+|+..++++|++|+.++.|+|..- .++.+ .+-.+++|+++.|||||...+.+++|+
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-----------------nkgh~gpVhcVrFSPdGE~yAsGSEDG--- 289 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-----------------NKGHFGPVHCVRFSPDGELYASGSEDG--- 289 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeec-----------------ccCCCCceEEEEECCCCceeeccCCCc---
Confidence 234566689999999999999986652 33332 133447899999999999888887776
Q ss_pred cccCCCCCCcEEEEEeec
Q 004298 247 EELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld~ 264 (763)
+|.++++..
T Consensus 290 ---------TirlWQt~~ 298 (334)
T KOG0278|consen 290 ---------TIRLWQTTP 298 (334)
T ss_pred ---------eEEEEEecC
Confidence 777777654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-14 Score=147.22 Aligned_cols=208 Identities=14% Similarity=0.118 Sum_probs=147.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE----E-Eec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL----W-TIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v----~-~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.++++.|.|-.+++|+.|-.|++|++.|--. + .+. .+..|+++.|+|.|..|.+.+.....+|+|- .|.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~ 246 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGF 246 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCc
Confidence 3599999999999999999999999999965421 1 122 3567999999999999999999999999994 454
Q ss_pred EEEE-------------ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCc
Q 004298 95 LLRS-------------LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 95 ~~~~-------------l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~ 160 (763)
.+.. -++|...++|-+|+|..+ .+.+++ .|+++|+|+.......+.-. . ......
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s------~DgtlRiWdv~~~k~q~qVi-k----~k~~~g 315 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS------YDGTLRIWDVNNTKSQLQVI-K----TKPAGG 315 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec------CCCcEEEEecCCchhheeEE-e----eccCCC
Confidence 3322 247889999999999874 567777 89999999987643221100 0 000111
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEEcCceeee-eeeeccc---------------ccccccCCCCCceeeec---
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIG-KINIHKF---------------HVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig-~~~i~~~---------------~~~~~s~~~~~~~~l~~--- 221 (763)
..+....+.++++++.+++|..||.|.+|+++..... .+.+.+. .....+.+.|.++++|+
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 2233355667889999999999999999997654221 1111111 11123667889999998
Q ss_pred --------------cceeeEEecCCCCEEEEEee
Q 004298 222 --------------ASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 222 --------------~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+-..++||||-+.++.+++
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 24567999999877776654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9e-15 Score=146.58 Aligned_cols=112 Identities=22% Similarity=0.331 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.|+.||.|...+|+|+.||.|+||++ +|+.+..+. |.+.|+|+.|+.|+..+.+++.|.+|+|..+.+|+++..+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 3999999999999999999999999999 899887775 8889999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++|.+-|+...|+++|..+++++ .|+++++|+..+
T Consensus 345 rGHsSyvn~a~ft~dG~~iisaS------sDgtvkvW~~Kt 379 (508)
T KOG0275|consen 345 RGHSSYVNEATFTDDGHHIISAS------SDGTVKVWHGKT 379 (508)
T ss_pred cCccccccceEEcCCCCeEEEec------CCccEEEecCcc
Confidence 99999999999999999999998 899999998654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-14 Score=146.79 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=153.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++.||||++||+|+.|..|.||+. +.+.+..+. |.+.|.+++|.-....+.+++.|++|++|+++....+.++
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 45999999999999999999999999999 677777755 7789999999999999999999999999999988888889
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
-+|++.|..|.-..-.+.+..|+ .|+++++|.+.....-+ +.++ ..+++++.+ -+..-+++
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGg------rDrT~rlwKi~eesqli---frg~-------~~sidcv~~---In~~Hfvs 343 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGG------RDRTVRLWKIPEESQLI---FRGG-------EGSIDCVAF---INDEHFVS 343 (479)
T ss_pred hCCccceeeechhcccceEEecc------ccceeEEEeccccceee---eeCC-------CCCeeeEEE---ecccceee
Confidence 99999999998887778777777 89999999984321111 1112 122233332 23356999
Q ss_pred EcCCCcEEEEEcCc-eeeeeeeeccc----------------------ccccccCCCCCceeeec---------------
Q 004298 180 GDKDGSICFNIFGI-FPIGKINIHKF----------------------HVAIPNADEQGTCRLLN--------------- 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~-~~ig~~~i~~~----------------------~~~~~s~~~~~~~~l~~--------------- 221 (763)
|+.||.|.+|.+-. .++...++... .--..+++.++.+|+|.
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence 99999999995432 22222222110 00123677889999996
Q ss_pred --cceeeEEecCCCCEEEEEeec
Q 004298 222 --ASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 222 --~~I~~v~~SpDg~~Llv~~~d 242 (763)
+-|.+++|+++|+.+++++..
T Consensus 424 ~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccEEEEEEEccCCCEEEEeccc
Confidence 468999999999988887653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=149.58 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=155.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE---EEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL---WTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++|..+.|-++.+.||+|+.|..|.+|+..+.+. .++. ..+.|+++.|.++++.+++++.|+.+++|++.+.+..+
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~ 255 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH 255 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh
Confidence 5699999999999999999999999999977762 1221 34679999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
++.+|...|+++.|......+++|+ .|++++.||+......- +.+. ......+.. ....+
T Consensus 256 TLsGHtdkVt~ak~~~~~~~vVsgs------~DRtiK~WDl~k~~C~k-------t~l~---~S~cnDI~~----~~~~~ 315 (459)
T KOG0288|consen 256 TLSGHTDKVTAAKFKLSHSRVVSGS------ADRTIKLWDLQKAYCSK-------TVLP---GSQCNDIVC----SISDV 315 (459)
T ss_pred hhcccccceeeehhhccccceeecc------ccchhhhhhhhhhheec-------cccc---cccccceEe----cceee
Confidence 9999999999999987776688998 89999999998631110 0111 000111111 14568
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeeccc---------ccccccCCCCCceeeec------------------cceeeEEe
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKF---------HVAIPNADEQGTCRLLN------------------ASIYKVAL 229 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~---------~~~~~s~~~~~~~~l~~------------------~~I~~v~~ 229 (763)
++|..|++|++|+...- ..-.++.+.. -....+++.+..+.+.+ .-.+.+.|
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 88999999999985443 2222222221 11122334444444443 12567899
Q ss_pred cCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccc
Q 004298 230 SKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 230 SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
|||+.++++++.++ .+|++.+.+.-+.
T Consensus 396 Spd~~YvaAGS~dg------------sv~iW~v~tgKlE 422 (459)
T KOG0288|consen 396 SPDGSYVAAGSADG------------SVYIWSVFTGKLE 422 (459)
T ss_pred CCCCceeeeccCCC------------cEEEEEccCceEE
Confidence 99999999988776 7888877765443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-13 Score=135.88 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=116.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c--------------------------------------eEEEec-
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q--------------------------------------RLWTIS- 59 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~--------------------------------------~v~~~~- 59 (763)
..+.|++++|+.+|+.||+++.|++|++|++.. . +++...
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 345699999999999999999999999999721 1 111110
Q ss_pred ---------------------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 60 ---------------------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 60 ---------------------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
|.-.|..+.....+++|++++.|.+|.||++. |+.+.++......-+..+.+|+|+++
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEE
Confidence 00125567777789999999999999999998 99999998877888889999999999
Q ss_pred eccCCCCCcccCCceeecCCCCC----CCCCC--CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPR----IPQMP--GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~----~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
++++ ...-+++|.+--. ..... ....||.+.+ ...+++++...+++.+.||++++|+.+
T Consensus 244 a~~g------FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 244 AVSG------FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------LAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEec------CCCCceEEEEEeccCcchhhhhhhheeccchhhe---------eeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9988 5667888864210 11100 0112333333 345577888899999999999999876
Q ss_pred c
Q 004298 193 I 193 (763)
Q Consensus 193 ~ 193 (763)
.
T Consensus 309 V 309 (420)
T KOG2096|consen 309 V 309 (420)
T ss_pred c
Confidence 5
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=159.22 Aligned_cols=186 Identities=18% Similarity=0.194 Sum_probs=146.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|.++.|++...+||.|+.+|+|++||+...+ +.++. |...+.++.|+|-|.+.|.|+.|+.+++||++...+.+.+.
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 39999999999999999999999999995444 34433 55678899999999999999999999999999888999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
+|...|.++.|+|+|+++++++ +|.++++||... .++...+.++.+-+ ....+++..-++++|
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~------ed~tvki~d~~a--gk~~~ef~~~e~~v---------~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGG------EDNTVKIWDLTA--GKLSKEFKSHEGKV---------QSLEFHPLEVLLAPG 214 (825)
T ss_pred CCcceeEEEeecCCCceeeccC------Ccceeeeecccc--cccccccccccccc---------cccccCchhhhhccC
Confidence 9999999999999999999998 799999999864 22222233333322 223356666789999
Q ss_pred cCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 181 DKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 181 s~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.|+++++|+...|.+ ++.... -..|.+.+|+|||+.++.+.+..
T Consensus 215 s~d~tv~f~dletfe~I~s~~~~------------------~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEVISSGKPE------------------TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCCceeeeeccceeEEeeccCCc------------------cCCceeeeecCCceeeecCchhh
Confidence 9999999999887643 332100 12477899999999888765543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=139.90 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=123.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...|.|+.+. ...+++|..|++|+||+.+.- .+..+. |.+.|.|+.| |.+.|++|++|.+|++||+++|+++.+
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 3458888885 567899999999999998543 333332 7788988887 567999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-----CCCCcccCCcc-------cccCC-cc----
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-----QMPGLVSGDTG-------FTDDS-ED---- 161 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-----~l~~~~s~~~~-------~~~~~-~~---- 161 (763)
+-.|...|..+.|+. .++++++ .|+++.+||+..+.. .+.++.+.... .+..+ +-
T Consensus 273 lihHceaVLhlrf~n--g~mvtcS------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 344 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEec------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEE
Confidence 989999999998874 4667776 777777777654210 11111111000 00000 00
Q ss_pred ------c-ccce------ecccCCCeeEEEEEcCCCcEEEEEcCceee-----------eeeeecccccccccCCCCCce
Q 004298 162 ------S-FREL------ANSSHQRFSILCSGDKDGSICFNIFGIFPI-----------GKINIHKFHVAIPNADEQGTC 217 (763)
Q Consensus 162 ------~-~~~~------~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-----------g~~~i~~~~~~~~s~~~~~~~ 217 (763)
. +..+ -.+..-++.++++|++|.+|++|+...-.+ ..+... ...+.+++.||.+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred EeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 0 0000 011234678999999999999998543211 111111 1234588899999
Q ss_pred eeec
Q 004298 218 RLLN 221 (763)
Q Consensus 218 ~l~~ 221 (763)
++|+
T Consensus 423 kvWd 426 (499)
T KOG0281|consen 423 KVWD 426 (499)
T ss_pred EEEe
Confidence 9998
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=144.08 Aligned_cols=197 Identities=16% Similarity=0.243 Sum_probs=146.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec---CCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS---PGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~---~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~ 94 (763)
.++-..+||.|-++|+|...|+|+||+... ..+.+-. -.++|..|.|++|++.|++.++. |.+.+|| +|.
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~ 138 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGN 138 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCC
Confidence 489999999999999999999999999954 4443322 34689999999999998877643 3455565 678
Q ss_pred EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+..+.+|...|.++.|-|.-. .+++|+ +|+++.||+-.|- +.......|..|+ -+..++|+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~s------dDn~v~ffeGPPF--KFk~s~r~HskFV---------~~VRysPD 201 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGS------DDNTVAFFEGPPF--KFKSSFREHSKFV---------NCVRYSPD 201 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEecc------CCCeEEEeeCCCe--eeeecccccccce---------eeEEECCC
Confidence 8888999999999999998765 578888 8999999986652 2233344566666 23346788
Q ss_pred eeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCC
Q 004298 174 FSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGH 252 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~ 252 (763)
+..+++.+.||+|.+|+-.. -.+|.+.- . .-+.++|..++||||+++++.++.|.
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~-----------~----~aHkGsIfalsWsPDs~~~~T~SaDk--------- 257 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELED-----------S----DAHKGSIFALSWSPDSTQFLTVSADK--------- 257 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecC-----------C----CCccccEEEEEECCCCceEEEecCCc---------
Confidence 99999999999999997222 12333310 0 12336799999999999999998876
Q ss_pred CCCcEEEEEeecc
Q 004298 253 GMHGLHCLVLDTS 265 (763)
Q Consensus 253 ~~~~l~~~~ld~~ 265 (763)
.++++.+.++
T Consensus 258 ---t~KIWdVs~~ 267 (603)
T KOG0318|consen 258 ---TIKIWDVSTN 267 (603)
T ss_pred ---eEEEEEeecc
Confidence 5666665554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=147.46 Aligned_cols=204 Identities=19% Similarity=0.231 Sum_probs=145.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|||...+=...+..-.|.+|..... .+.++. -.+.|.+++|+.||++||+|...|.|+|+|..+..+++.+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 45999999997744333334566888887333 333233 4567999999999999999999999999997776788899
Q ss_pred cccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
.+|+.+|..+.|+|++ ..+++|+ +|+.+++||..+..- ....++|+..+ .+..+. +.+..+++
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s~a~v--~~~l~~htDYV-------R~g~~~-~~~~hivv 170 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLSTAYV--QAELSGHTDYV-------RCGDIS-PANDHIVV 170 (487)
T ss_pred hhccCceeEEEecccCCeEEEecC------CCceEEEEEcCCcEE--EEEecCCccee-------Eeeccc-cCCCeEEE
Confidence 9999999999999976 5667787 899999999887431 11233444433 333332 34557999
Q ss_pred EEcCCCcEEEEEcCcee--eeeeeeccccc---------c-cccCCCCCceeeec---------------cceeeEEecC
Q 004298 179 SGDKDGSICFNIFGIFP--IGKINIHKFHV---------A-IPNADEQGTCRLLN---------------ASIYKVALSK 231 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~--ig~~~i~~~~~---------~-~~s~~~~~~~~l~~---------------~~I~~v~~Sp 231 (763)
+|+.||+|++|+..+.. +-+++ |..+. . +.++ .-..+++|| ..|+|+.+..
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasA-gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASA-GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEc-CCCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999999999977652 22221 11111 1 1122 235678887 4799999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
|++.|+.++-|+
T Consensus 249 ~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 249 DSTRLLSGSLDR 260 (487)
T ss_pred CCceEeeccccc
Confidence 999999988776
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-13 Score=140.73 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC---CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG---KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~---~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
.+|+.+..+|+|++|.++++|++....++ .|..+-...+. -.+++.+|+|||-.|++|..||.|+|||+.++..+.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc
Confidence 34999999999999999999999999998 56555555543 358999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.|.+|.++|+.|.|+.||.+++++. +|+.+++||++.-. ..+. ..- .........++++.+.+|
T Consensus 384 ~Fpght~~vk~i~FsENGY~Lat~a------dd~~V~lwDLRKl~-n~kt-~~l--------~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENGYWLATAA------DDGSVKLWDLRKLK-NFKT-IQL--------DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred cCCCCCCceeEEEeccCceEEEEEe------cCCeEEEEEehhhc-ccce-eec--------cccccceeEEEcCCCCeE
Confidence 9999999999999999999999998 88999999998621 1111 000 011111234567888899
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
+.++.|=+|+++.
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9997665555443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-14 Score=156.25 Aligned_cols=203 Identities=14% Similarity=0.145 Sum_probs=153.1
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEccC---ceE-EEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 24 IKIAEWNP-EKDLLAMATEDSKILLHRFNW---QRL-WTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~---~~v-~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+..++|+. ..++||+++..|.|.+|+++. ++. ..+. |...|++++|++ ...+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 55688984 348999999999999999964 332 2333 888999999999 5678999999999999999998888
Q ss_pred EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.++.+....|..+.|+|.. ..++++. +.|.+..||++.+.... .....|.+++ ++..++|+..
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~------dsG~lqlWDlRqp~r~~-~k~~AH~GpV---------~c~nwhPnr~ 233 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIH------DSGYLQLWDLRQPDRCE-KKLTAHNGPV---------LCLNWHPNRE 233 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEec------CCceEEEeeccCchhHH-HHhhcccCce---------EEEeecCCCc
Confidence 8888878899999999854 4666765 89999999999752221 1234677776 5666788999
Q ss_pred EEEEEcCCCcEEEEEcCce---eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCC
Q 004298 176 ILCSGDKDGSICFNIFGIF---PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGH 252 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~---~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~ 252 (763)
+||+|+.|+.|+||+.+.- +..+++.. +++.++.|-|+.++.+..|+-.
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------------------apv~rVkWRP~~~~hLAtcsmv--------- 285 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTINTI-------------------APVGRVKWRPARSYHLATCSMV--------- 285 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEeec-------------------ceeeeeeeccCccchhhhhhcc---------
Confidence 9999999999999987642 33333210 3577888998888777766521
Q ss_pred CCCcEEEEEeeccccccC
Q 004298 253 GMHGLHCLVLDTSIFSKR 270 (763)
Q Consensus 253 ~~~~l~~~~ld~~~l~~~ 270 (763)
....++++.+.-++|+..
T Consensus 286 ~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred ccceEEEEeeccccccce
Confidence 123677777777766543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=134.90 Aligned_cols=154 Identities=20% Similarity=0.281 Sum_probs=121.8
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC-CeEEE
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN-GKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~-g~~~~ 97 (763)
+|.++.|++.. +.+++++.|++|++|+.+ .+-+.++. |..+|....|+| .+..+++++.||+.++||++. |+.+.
T Consensus 106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 49999999965 667788999999999994 45566665 778999999999 888999999999999999985 55555
Q ss_pred EecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 SLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+..|...|.|+.|+.-. ..+++|+ .|+.++.||++....++... .+| +..+..+.++++. .++
T Consensus 186 -i~ah~~Eil~cdw~ky~~~vl~Tg~------vd~~vr~wDir~~r~pl~eL-~gh-------~~AVRkvk~Sph~-~~l 249 (311)
T KOG0277|consen 186 -IEAHNSEILCCDWSKYNHNVLATGG------VDNLVRGWDIRNLRTPLFEL-NGH-------GLAVRKVKFSPHH-ASL 249 (311)
T ss_pred -EEeccceeEeecccccCCcEEEecC------CCceEEEEehhhccccceee-cCC-------ceEEEEEecCcch-hhH
Confidence 88999999999999755 5677887 89999999998643332211 222 3345556665543 479
Q ss_pred EEEEcCCCcEEEEEcC
Q 004298 177 LCSGDKDGSICFNIFG 192 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~ 192 (763)
|++++.|=++++|++.
T Consensus 250 LaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPE 265 (311)
T ss_pred hhhccccceEEecccc
Confidence 9999999999999855
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=142.72 Aligned_cols=206 Identities=17% Similarity=0.118 Sum_probs=141.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc-----
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE----- 91 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----- 91 (763)
-+|+.|.+++-+|.|.+++.|+..|.|++|.++ |..+..+. |-..|+|+.|+-||.+|++|+.||.|.+|++.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 356789999999999999999999999999994 44443333 77899999999999999999999999999864
Q ss_pred ----CCeEEEEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 92 ----NGKLLRSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 92 ----~g~~~~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
+-+.++.+..|.-+|+.+...+-| ..+++.| .|+++++||+... .+.....-. ..+.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS------~D~t~k~wdlS~g--~LLlti~fp--------~si~- 221 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS------EDRTIKLWDLSLG--VLLLTITFP--------SSIK- 221 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEec------CCceEEEEEeccc--eeeEEEecC--------Ccce-
Confidence 346788999999999999887643 5677887 8999999998652 111100000 0111
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeec--cceeeEEecCCCCEEEEEeecC
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLN--ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~--~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+...++....+.+|+++|+|.+..+-..+--+-.+.....+. .......+.-.. .+|++++.|-||+.|+.+..|+
T Consensus 222 -av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~-~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg 299 (476)
T KOG0646|consen 222 -AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE-ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG 299 (476)
T ss_pred -eEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc-ccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence 123456677899999999998776443331111111000000 000000011111 3799999999999998887765
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=150.92 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=130.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+++.|.|+++||||.+||++--|.+|+||-++.-+.+-- -|.-+|.|+..+||++.+++|+.|..|++|.+.-|.|-
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh
Confidence 3456799999999999999999999999999966544332 37789999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC--CCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP--RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~--~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+++-+|++.|.++.|.|....+.+++ .|+.++.||-.. .+..+++|.....+ .+..++|
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~g------KD~kvKqWDg~kFe~iq~L~~H~~ev~c-------------Lav~~~G 646 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCG------KDGKVKQWDGEKFEEIQKLDGHHSEVWC-------------LAVSPNG 646 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEec------CcceEEeechhhhhhheeeccchheeee-------------eEEcCCC
Confidence 99999999999999999998888888 999999998764 34555554433222 2245888
Q ss_pred eEEEEEcCCCcEEEEEc
Q 004298 175 SILCSGDKDGSICFNIF 191 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~ 191 (763)
.++++++.|.+|++|.-
T Consensus 647 ~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 647 SFVVSSSHDKSIRLWER 663 (888)
T ss_pred CeEEeccCCceeEeeec
Confidence 99999999999999953
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-12 Score=121.26 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=139.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce------EEEec-CCCcEEEEEEccC----CCEEEEEE-cCCc
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR------LWTIS-PGKSVTSLCWRPD----GKAIAVGL-EDGT 84 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~------v~~~~-~~~~V~~l~wspD----G~~Lasg~-~Dg~ 84 (763)
.|+.-+.|.|.+|||.|.++|+|++|.+|++.++|... -..++ |.+.|..++|-.| |..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 34445669999999999999999999999998884321 11222 7788999999643 55777776 6788
Q ss_pred EEEEEccCCeEEEEecccCCceeEE-EeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCL-NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l-~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~ 163 (763)
|++-|-.+|+..+.+.+|.+.|.++ .|+ +-.+++|+ .|+++||||++-+...-. -.+.+-+..-.+.
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn--~~m~~sgs------qdktirfwdlrv~~~v~~----l~~~~~~~gless 232 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWN--GAMFASGS------QDKTIRFWDLRVNSCVNT----LDNDFHDGGLESS 232 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEec--CcEEEccC------CCceEEEEeeeccceeee----ccCcccCCCcccc
Confidence 8888888999999999999999877 454 77899998 899999999885421100 0111111111111
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.....+.+|.+.+|++|..|....+|+++.- .+.++..| .+.|.++.|||...+|+.++.|
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph------------------sadir~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH------------------SADIRCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC------------------ccceeEEEeCCCceEEEEeccc
Confidence 1233456788999999999999999985432 33333211 1357899999998888887766
Q ss_pred C
Q 004298 243 Q 243 (763)
Q Consensus 243 ~ 243 (763)
.
T Consensus 295 ~ 295 (350)
T KOG0641|consen 295 M 295 (350)
T ss_pred c
Confidence 4
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=134.97 Aligned_cols=183 Identities=17% Similarity=0.240 Sum_probs=142.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW--QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|..+.++|+.+.+++++.|..|+||...- .+.....|..+|+.+..+|.|.||.+++.||+....|+++|..+....
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS 342 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe
Confidence 499999999999999999999999999832 233344588999999999999999999999999999999999887664
Q ss_pred c--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 101 S--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 101 ~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
. ..-.+++..|+|||..+.+|. .|+.+++||...+ ..+.+ +|++.+ .. ..++.+|-+
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt------~d~~vkiwdlks~~~~a~Fp----ght~~v-------k~--i~FsENGY~ 403 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGT------PDGVVKIWDLKSQTNVAKFP----GHTGPV-------KA--ISFSENGYW 403 (506)
T ss_pred eccccceeEEeeEcCCceEEeccC------CCceEEEEEcCCccccccCC----CCCCce-------eE--EEeccCceE
Confidence 3 234689999999999999998 8999999998764 22333 343333 22 346688999
Q ss_pred EEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 177 LCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
|+++..||.|++|+.+... .-++.+.. ...+.+++|...|++|.+.++
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~~l~~-----------------~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTIQLDE-----------------KKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred EEEEecCCeEEEEEehhhcccceeeccc-----------------cccceeEEEcCCCCeEEeecc
Confidence 9999999999999977543 11221111 024678999999999988744
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=149.47 Aligned_cols=161 Identities=13% Similarity=0.197 Sum_probs=122.9
Q ss_pred ecCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCce--EEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEc
Q 004298 15 QFDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQR--LWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~--v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdv 90 (763)
+|++. |+++.|++.. .+|++|+.||.|++|++...+ .-.....+.|+.+.|+| .+..|+++.+.|.+.+||+
T Consensus 131 EH~Rs----~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 131 EHERS----ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred hhccc----eeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeec
Confidence 46666 9999999976 788899999999999993322 22223557899999999 8889999999999999999
Q ss_pred cC-CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 91 EN-GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 91 e~-g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+. .++..++..|.++|.|+.|+|++.++|+|+ .|+.+++|+.............. ...+.++.|-
T Consensus 207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG------RDK~vkiWd~t~~~~~~~~tInT--------iapv~rVkWR 272 (839)
T KOG0269|consen 207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG------RDKMVKIWDMTDSRAKPKHTINT--------IAPVGRVKWR 272 (839)
T ss_pred cCchhHHHHhhcccCceEEEeecCCCceeeecC------CCccEEEEeccCCCccceeEEee--------cceeeeeeec
Confidence 84 456778899999999999999999999999 99999999988532221111111 1233455555
Q ss_pred cCCCeeEEEEEc--CCCcEEEEEcCce
Q 004298 170 SHQRFSILCSGD--KDGSICFNIFGIF 194 (763)
Q Consensus 170 ~~~~~~~L~sgs--~DG~I~lw~~~~~ 194 (763)
+... ..|++++ .|-.|++|+....
T Consensus 273 P~~~-~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 273 PARS-YHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred cCcc-chhhhhhccccceEEEEeeccc
Confidence 5333 5677776 6889999987653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=131.80 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=167.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE------ccC-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD------VEN- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd------ve~- 92 (763)
++|+.++-......+++++.|.+-.||.+ .|..+.++. |.+.|++|+|+|.|.++++++.|++-.||. +..
T Consensus 149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~ 228 (481)
T KOG0300|consen 149 DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN 228 (481)
T ss_pred cceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence 46999998888889999999999999999 788888876 889999999999999999999999999994 110
Q ss_pred -----------------------------C----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 93 -----------------------------G----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 93 -----------------------------g----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
| -++..+++|.+.|.+..|-..|+.+++++ +|++..+||..
T Consensus 229 ~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS------WDRTAnlwDVE 302 (481)
T KOG0300|consen 229 NAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS------WDRTANLWDVE 302 (481)
T ss_pred CCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee------ccccceeeeec
Confidence 1 12345778999999999999999999998 99999999998
Q ss_pred CC--CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccc------------
Q 004298 140 PR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFH------------ 205 (763)
Q Consensus 140 ~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~------------ 205 (763)
+. ...+. ||..-. ..++.++...++++.+.|.+.++|+|. ..|..+.+.+..
T Consensus 303 tge~v~~Lt----GHd~EL---------tHcstHptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 303 TGEVVNILT----GHDSEL---------THCSTHPTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred cCceecccc----Ccchhc---------cccccCCcceEEEEeccCceeEeccch-hhcceeeeecccccceeEEEEecC
Confidence 74 22333 332211 123456888999999999999999987 334444433321
Q ss_pred cccccCCCCCceeeec-----cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccccCc
Q 004298 206 VAIPNADEQGTCRLLN-----ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFSKRK 271 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~-----~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~~~ 271 (763)
....+++.|.++++|+ .++-.+..+.--+.+.+...+.++. .+.++..+.++.|+..-+.+-+
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA---iPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA---IPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEE---eccCCceEEEEecCCCccccCC
Confidence 1234788899999998 3444455554455555554443332 3556678888888877666554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=124.27 Aligned_cols=195 Identities=20% Similarity=0.258 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|..++|+|.. +++|+++.|.+|++|+. .++++..+.....-.-+.|+|+|+++++|..|..|...|.++.+..+..
T Consensus 65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh
Confidence 458889999855 89999999999999999 7888888876665567999999999999999999999999998888776
Q ss_pred cccCCceeEEEeecCCC-ceeccCCCCCcccCCceee--cCCCCCCCCCCCcccCCcc---------cccCCccc-----
Q 004298 100 KSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRF--FPPAPRIPQMPGLVSGDTG---------FTDDSEDS----- 162 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~--wd~~~~~~~l~~~~s~~~~---------~~~~~~~~----- 162 (763)
+. .-.+.-+.|+-++. ++.+.+ .|.+.+ |+.+.+...+..|.+.-.+ |..++.+.
T Consensus 145 ~~-~~e~ne~~w~~~nd~Fflt~G-------lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 145 QF-KFEVNEISWNNSNDLFFLTNG-------LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred cc-cceeeeeeecCCCCEEEEecC-------CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 43 45667777875554 444443 677776 4444444444444321110 11111110
Q ss_pred ----------ccc-----eecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceee
Q 004298 163 ----------FRE-----LANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYK 226 (763)
Q Consensus 163 ----------~~~-----~~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~ 226 (763)
+.+ -..+++.++.+|++|++|-.|-|-.... -.+..++ ..++-..
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-------------------~~~~t~t 277 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-------------------CEGPTFT 277 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-------------------ccCCcee
Confidence 111 1134567888999999998876653221 0111111 1245678
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
++|.|....|+.++.++
T Consensus 278 VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 278 VAWHPKRPLLAYACDDK 294 (313)
T ss_pred EEecCCCceeeEEecCC
Confidence 99999988888888876
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=133.41 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=140.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC------c--------------------eEEEec-CCCcEEEEEEccCCCE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW------Q--------------------RLWTIS-PGKSVTSLCWRPDGKA 75 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~------~--------------------~v~~~~-~~~~V~~l~wspDG~~ 75 (763)
.|.+++..+++..+++|+.|..|.||+... + ++-.+. |..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 499999999999999999999999999311 0 122222 667899999998 668
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCC-cccCCcc
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-LVSGDTG 154 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-~~s~~~~ 154 (763)
+.+++.|.+|+.||+++|..+.++.+ ...+.|+..+|...++++|+ .|+.+++||++.+-..+.. ...+|..
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs------sdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS------SDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC------CCCceeecCCCCCCCceeEEeeecchh
Confidence 99999999999999999999988876 67899999999999999998 8999999999986444332 3456666
Q ss_pred cccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCC
Q 004298 155 FTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLF 234 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~ 234 (763)
++ ..+.|++. +-..|++|+.||++++|+.++..-.-++++. ++..|.++.|+. +.
T Consensus 347 wV-------ssvkwsp~-~~~~~~S~S~D~t~klWDvRS~k~plydI~~----------------h~DKvl~vdW~~-~~ 401 (423)
T KOG0313|consen 347 WV-------SSVKWSPT-NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG----------------HNDKVLSVDWNE-GG 401 (423)
T ss_pred hh-------hheecCCC-CceEEEEEecCCeEEEEEeccCCCcceeecc----------------CCceEEEEeccC-Cc
Confidence 65 23445443 3468999999999999998764322232221 123467777765 34
Q ss_pred EEEEEeecC
Q 004298 235 HLTVLCSGQ 243 (763)
Q Consensus 235 ~Llv~~~d~ 243 (763)
.++.++.|.
T Consensus 402 ~IvSGGaD~ 410 (423)
T KOG0313|consen 402 LIVSGGADN 410 (423)
T ss_pred eEEeccCcc
Confidence 555554443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=148.94 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=101.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|..+.||. .++|.+++.|.+|++|++ ..+.+..+.|..-|+|++|+| |.+||++|+-||.|+||++...+++.-
T Consensus 369 t~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 369 TADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred chhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 35699999995 567789999999999999 667889999999999999999 999999999999999999998888877
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
...+ .-|+++++.|+|+..+.|+ .+|.++||++..
T Consensus 448 ~Dl~-~lITAvcy~PdGk~avIGt------~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 448 NDLR-DLITAVCYSPDGKGAVIGT------FNGYCRFYDTEG 482 (712)
T ss_pred hhhh-hhheeEEeccCCceEEEEE------eccEEEEEEccC
Confidence 7664 7899999999999999998 899999998765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=135.89 Aligned_cols=179 Identities=18% Similarity=0.250 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---EEEe----------------cCCCcEEEEEEccCCCEEEEEEcCC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---LWTI----------------SPGKSVTSLCWRPDGKAIAVGLEDG 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---v~~~----------------~~~~~V~~l~wspDG~~Lasg~~Dg 83 (763)
|.+++.+|+..+..+++.+++|.-|+. .|.. +|.- .|.+.+.+++.+|||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 999999999999999999999999998 5542 2322 1345689999999999999999999
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcc
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~ 161 (763)
.|.||+.++.+.++.+++|.+.|.+++|-.....+.+++ .|+++++|+.... ...+.+|.++..+
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s------~Drsvkvw~~~~~s~vetlyGHqd~v~~------- 291 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS------ADRSVKVWSIDQLSYVETLYGHQDGVLG------- 291 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeee------cCCceEEEehhHhHHHHHHhCCccceee-------
Confidence 999999999999999999999999999988777777877 8999999988752 3334433332222
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEEcCc-----ee--eeeeeecc--cccccccCCCCCceeeec
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNIFGI-----FP--IGKINIHK--FHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-----~~--ig~~~i~~--~~~~~~s~~~~~~~~l~~ 221 (763)
...-.....+.+|+.|+++++|.... |. .+.++.-. ...++.+++.+|.+-||.
T Consensus 292 ------IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 292 ------IDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred ------echhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 12234567788888999999996422 11 11111111 124667899999999997
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=135.79 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=149.4
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCce---------EEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEcc-
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQR---------LWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVE- 91 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~---------v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve- 91 (763)
-..++|++.. -.+++++.|++|.+|+++... .+.-.|...|..++|+| +...|++.++|+.+.|||++
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 5669999966 567889999999999994321 12223778899999999 67789999999999999999
Q ss_pred -CCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 92 -NGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 92 -~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+.+..+...+|.+.|.|++|+|-+ ..+|+|| .|+++.+||.+.-..++. ...+|. ..+-.+.|+
T Consensus 260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------~D~tV~LwDlRnL~~~lh-~~e~H~-------dev~~V~WS 325 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------ADKTVALWDLRNLNKPLH-TFEGHE-------DEVFQVEWS 325 (422)
T ss_pred CCCCCcccccccCCceeEEEeCCCCCceEEecc------CCCcEEEeechhcccCce-eccCCC-------cceEEEEeC
Confidence 567777888999999999999966 5678888 899999999997433222 223332 333345665
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeee---ccceeeEEecCCCCEEEEEeecCccc
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLL---NASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~---~~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
++.. .+|++++.||.+.+|++.. +|..... .....+....+.++ .+.|...+|.|+-...++...++
T Consensus 326 Ph~e-tvLASSg~D~rl~vWDls~--ig~eq~~----eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD--- 395 (422)
T KOG0264|consen 326 PHNE-TVLASSGTDRRLNVWDLSR--IGEEQSP----EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED--- 395 (422)
T ss_pred CCCC-ceeEecccCCcEEEEeccc--cccccCh----hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC---
Confidence 5433 6999999999999998654 3332110 01111122222222 24688999999988888776543
Q ss_pred cccCCCCCCcEEEEEeecccc
Q 004298 247 EELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld~~~l 267 (763)
..++++.+.-++.
T Consensus 396 --------N~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 396 --------NILQIWQMAENIY 408 (422)
T ss_pred --------ceEEEeecccccc
Confidence 3677777765544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-13 Score=139.42 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=146.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEE-e-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWT-I-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~-~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+-|.++...|||+-|++|+.-.++.||++. .-+|.. + ..+....+++.+||.+..++++.||.|.|||+.+...++
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 458899999999999999999999999992 222221 1 133467889999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+++|.+.+.||..+++|..+-+|+ -|.++|.||.+........ ++..+-++...+++++.+
T Consensus 546 qfqGhtDGascIdis~dGtklWTGG------lDntvRcWDlregrqlqqh------------dF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGG------LDNTVRCWDLREGRQLQQH------------DFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCC------Cccceeehhhhhhhhhhhh------------hhhhhheecccCCCccce
Confidence 9999999999999999999999998 8999999999864322111 111222445567889999
Q ss_pred EEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCcc
Q 004298 178 CSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
++|..++.+.+--.... .++ .+.++...|.++.|++-|+.++..+.|.++
T Consensus 608 avGMens~vevlh~skp--~ky----------------qlhlheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP--EKY----------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred eeecccCcEEEEecCCc--cce----------------eecccccEEEEEEecccCceeeecCchhhh
Confidence 99999999876532211 111 223344568899999999999998888765
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-13 Score=134.23 Aligned_cols=147 Identities=17% Similarity=0.282 Sum_probs=111.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce-------------------------------EEEec----------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR-------------------------------LWTIS---------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~-------------------------------v~~~~---------- 59 (763)
+.|.|+.|+. .++++|+.|.+|+||+. +|+. +|...
T Consensus 238 GSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 238 GSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred CcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 4599999874 48999999999999999 5542 33322
Q ss_pred ---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 60 ---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 60 ---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
|-..|+.+.| |.++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+ .|.+|++|
T Consensus 316 LvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS------SDntIRlw 385 (499)
T KOG0281|consen 316 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS------SDNTIRLW 385 (499)
T ss_pred Hhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC------CCceEEEE
Confidence 1123667766 56799999999999999999999999999999999998764 78999998 89999999
Q ss_pred CCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 137 PPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 137 d~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
|.... .+.....||...+ .++.+ +.+.+++|..||+|++|++..
T Consensus 386 di~~G--~cLRvLeGHEeLv-------RciRF----d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 386 DIECG--ACLRVLEGHEELV-------RCIRF----DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred ecccc--HHHHHHhchHHhh-------hheee----cCceeeeccccceEEEEeccc
Confidence 98763 1112223443332 22222 235799999999999998554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-12 Score=127.32 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=97.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEe-cCCCcEEEEEEccCCC--EEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTI-SPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~-~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+.+++++.+ +.++|+|+.|.+|.||++.. ..+-.+ .|.+.|+++.|.|+-. .|.+|++||.|.+|++...+++
T Consensus 43 ~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 43 AGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 3459999986 89999999999999999943 233333 4889999999999775 8999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+++++|.+.|+.++.+|.+++..+.+ .|+.++.|++..
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg------~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVG------GDQVLRTWNLVR 158 (362)
T ss_pred eeecccccccceeEecCCCceEEEEc------CCceeeeehhhc
Confidence 99999999999999999999877776 799999998754
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=134.26 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=116.8
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc--------eEEEec-CCCcEEEEEEccC-CCEEEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ--------RLWTIS-PGKSVTSLCWRPD-GKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~--------~v~~~~-~~~~V~~l~wspD-G~~Lasg~~Dg~V~lwdv 90 (763)
+.|..++|||-. +.||+|++|.+|.||.+..+ .+..+. |..+|--+.|+|. .+.|++++.|++|.||++
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 349999999955 67999999999999998332 222222 7788999999995 468999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.+|+.+-++. |...|.+++|+.+|..+++.+ .|+.+|+||.+... +.....+|.+.. . ....+
T Consensus 162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~--~v~e~~~heG~k-----~---~Raif 224 (472)
T KOG0303|consen 162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGT--VVSEGVAHEGAK-----P---ARAIF 224 (472)
T ss_pred cCCceeeecC-CCCeEEEEEeccCCceeeeec------ccceeEEEcCCCCc--EeeecccccCCC-----c---ceeEE
Confidence 9999998887 999999999999999999988 99999999998631 111112333322 0 11112
Q ss_pred CCCeeEEEEEc---CCCcEEEEEcCc
Q 004298 171 HQRFSILCSGD---KDGSICFNIFGI 193 (763)
Q Consensus 171 ~~~~~~L~sgs---~DG~I~lw~~~~ 193 (763)
-.+++++.+|. ++..+.+|+-..
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eccCceeeeccccccccceeccCccc
Confidence 24555666665 677888997443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-13 Score=144.06 Aligned_cols=210 Identities=15% Similarity=0.181 Sum_probs=151.0
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEccC--c----e-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e
Q 004298 26 IAEWN-PEKDLLAMATEDSKILLHRFNW--Q----R-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K 94 (763)
Q Consensus 26 ~l~~s-P~~~lLA~~s~Dg~V~v~~l~~--~----~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~ 94 (763)
.+.-+ |.+++|.+|+.||.|++|..+. + + +.++. |...|+.+....+|+.|++++.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 4567799999999999999832 1 1 22332 7788999999999999999999999999999876 6
Q ss_pred EEEEecccCCceeEEEe-ecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc--ccccCCcccccceecccC
Q 004298 95 LLRSLKSHTVAVVCLNW-EEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT--GFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~w-s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~--~~~~~~~~~~~~~~~~~~ 171 (763)
++.+++.|...|.|++. .++...+++|+ -|+.|.+||+......+.......+ ....+...++ .+.+.+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgG------LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si--YSLA~N 180 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGG------LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI--YSLAMN 180 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecC------CCccEEEEEccCcchhhhhhccccccccCCCCCccce--eeeecC
Confidence 77889999999999999 78888999998 8999999998854322222211111 1111111222 334456
Q ss_pred CCeeEEEEEcCCCcEEEEEcCce-eeeeeee----------cccccccccCCCCCceeeec--------------cceee
Q 004298 172 QRFSILCSGDKDGSICFNIFGIF-PIGKINI----------HKFHVAIPNADEQGTCRLLN--------------ASIYK 226 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i----------~~~~~~~~s~~~~~~~~l~~--------------~~I~~ 226 (763)
+.+.++++|+..+.+++|+...- .+-++.. .+-.....+++.|+++++|+ ..|.+
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 77789999999999999975542 2222221 12223345888999999998 34778
Q ss_pred EEecCCCCEEEEEeecC
Q 004298 227 VALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~ 243 (763)
+..+|+.++++.+..++
T Consensus 261 L~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDG 277 (735)
T ss_pred EeeCCCcceEEecCCCC
Confidence 88889999999887766
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=136.82 Aligned_cols=162 Identities=16% Similarity=0.262 Sum_probs=119.0
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc--CceEEEe--cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC-Ce
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN--WQRLWTI--SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN-GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~--~~~v~~~--~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~-g~ 94 (763)
+.|..++|+|. .++++++++|+.+.||++. ..+.... .|...|+|++|+| ++..||+|+.|++|+|||+++ .+
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 34999999995 5899999999999999994 2222221 2788999999999 778999999999999999987 56
Q ss_pred EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcc--cc-cCCcccccceec
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTG--FT-DDSEDSFRELAN 168 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~--~~-~~~~~~~~~~~~ 168 (763)
.++++.+|...|.++.|+|... .+++++ .|+.+.+||+..--.... ....+... |+ .+....+..+.|
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSG------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecc------cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence 8899999999999999999875 566666 899999999865211110 00000000 11 112234455666
Q ss_pred ccCCCeeEEEEEcCCCcEEEEE
Q 004298 169 SSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
.++.. -++++.+.|+.++||.
T Consensus 382 np~eP-W~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 382 NPNEP-WTIASVAEDNILQIWQ 402 (422)
T ss_pred CCCCC-eEEEEecCCceEEEee
Confidence 55433 4889999999999996
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=127.79 Aligned_cols=156 Identities=16% Similarity=0.257 Sum_probs=121.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEE-ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWT-ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~-~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++|.++.|+|....|++++.|++|++|++... +-++ +.....|.+|.|+|.|.+|++|..-.++++||+++-++..
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 45999999999999999999999999998332 2222 2345689999999999999999999999999999988765
Q ss_pred Ee---cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCcccccceecccCC
Q 004298 98 SL---KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 98 ~l---~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
.- ..|.+.|+++.+++.++..++++ .||.|++||-.... .... ..|.+ ..+ .+..+..
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaS------kDG~IklwDGVS~rCv~t~~---~AH~g------sev--cSa~Ftk 315 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTAS------KDGAIKLWDGVSNRCVRTIG---NAHGG------SEV--CSAVFTK 315 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEec------cCCcEEeeccccHHHHHHHH---hhcCC------cee--eeEEEcc
Confidence 53 36889999999999999999999 99999999965421 1111 11111 111 1223557
Q ss_pred CeeEEEEEcCCCcEEEEEcCce
Q 004298 173 RFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+++++++.+.|..+++|.++.-
T Consensus 316 n~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CCeEEeecCCcceeeeeeecCC
Confidence 8899999999999999976543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=134.02 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=122.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e-EEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K-LLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~-~~~~ 98 (763)
.|.++.|++ ...+.+++.|++|+.|++ .++.+-++..++..+|+..+|..++||+|+.|..+++||.+++ . ..++
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 399999998 667789999999999999 7888888888999999999999999999999999999999864 3 4567
Q ss_pred ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|.+.|.++.|+|... .+++++ .|+++++||.+....++... .+|. +.+-.+.| .++..+
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S------~D~t~klWDvRS~k~plydI-~~h~-------DKvl~vdW---~~~~~I 403 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGS------YDNTVKLWDVRSTKAPLYDI-AGHN-------DKVLSVDW---NEGGLI 403 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEe------cCCeEEEEEeccCCCcceee-ccCC-------ceEEEEec---cCCceE
Confidence 899999999999999875 567887 89999999999865444321 2221 11212222 455689
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
++|+.|.+|+++-
T Consensus 404 vSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 404 VSGGADNKLRIFK 416 (423)
T ss_pred EeccCcceEEEec
Confidence 9999999999875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=141.34 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=143.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
.-++|+ .++.+|+|. ...|++|+.....+..+. +...|+++.|+++|++||+|..+|.|.|||.++.+.++.+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 357899 567777765 457999999444444433 268899999999999999999999999999999999999998
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
|...|.+++|. +..+.+|+ .++.|..+|.+....... ...+|..- +..+ .++++++.+++|+
T Consensus 259 h~~rvg~laW~--~~~lssGs------r~~~I~~~dvR~~~~~~~-~~~~H~qe-------VCgL--kws~d~~~lASGg 320 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGS------RDGKILNHDVRISQHVVS-TLQGHRQE-------VCGL--KWSPDGNQLASGG 320 (484)
T ss_pred cCceeEEEecc--CceEEEec------CCCcEEEEEEecchhhhh-hhhcccce-------eeee--EECCCCCeeccCC
Confidence 99999999999 55677777 899999999886422211 12223222 2223 3457788999999
Q ss_pred CCCcEEEEEcCc-eeeeeeeecccc-----cc--------cccCCCCCceeeec-------------cceeeEEecCCCC
Q 004298 182 KDGSICFNIFGI-FPIGKINIHKFH-----VA--------IPNADEQGTCRLLN-------------ASIYKVALSKDLF 234 (763)
Q Consensus 182 ~DG~I~lw~~~~-~~ig~~~i~~~~-----~~--------~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~ 234 (763)
.|+.+.||+... -+...+.-|... .. .+.+..|+++++|+ +-|..+.||+..+
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence 999999998732 233333322221 11 12445789999998 4588999999998
Q ss_pred EEEEEee
Q 004298 235 HLTVLCS 241 (763)
Q Consensus 235 ~Llv~~~ 241 (763)
.+++...
T Consensus 401 Ei~sthG 407 (484)
T KOG0305|consen 401 ELLSTHG 407 (484)
T ss_pred EEEEecC
Confidence 8887643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=117.46 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=128.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc-------C-----ce-EEEe----cCCCcEEEEEEccCCCEEEEEEcCCcE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN-------W-----QR-LWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTI 85 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-------~-----~~-v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V 85 (763)
.|.+++|+|.|.+.|+|++..+.+|.... + ++ .... .|.+.|.|.+|+|+|++||+|+.|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 49999999999999999999998776531 0 11 1111 266789999999999999999999999
Q ss_pred EEEEccC--CeEE---EEecccCCceeEEEeecC----CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccc
Q 004298 86 TLHDVEN--GKLL---RSLKSHTVAVVCLNWEED----AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFT 156 (763)
Q Consensus 86 ~lwdve~--g~~~---~~l~~h~~~V~~l~ws~~----~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~ 156 (763)
++.-... .... ..+..|.+.|..++|..+ +..+++++ -.|..|.+-|... .......++|++.+
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-----agdc~iy~tdc~~--g~~~~a~sghtghi 186 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-----AGDCKIYITDCGR--GQGFHALSGHTGHI 186 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-----CCcceEEEeecCC--CCcceeecCCcccE
Confidence 9987653 2222 246779999999999754 34666665 1355555545433 22233456677655
Q ss_pred cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEE
Q 004298 157 DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHL 236 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~L 236 (763)
+. ...-++-++++|+.|.+|++|+.+....-..- .. .+..++ +-...|..++..|.|+.|
T Consensus 187 ---------la-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l--~~--~~~~~g------lessavaav~vdpsgrll 246 (350)
T KOG0641|consen 187 ---------LA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTL--DN--DFHDGG------LESSAVAAVAVDPSGRLL 246 (350)
T ss_pred ---------EE-EEEecCcEEEccCCCceEEEEeeeccceeeec--cC--cccCCC------cccceeEEEEECCCccee
Confidence 11 12234568999999999999997654322211 10 011111 111357889999999888
Q ss_pred EEEeecC
Q 004298 237 TVLCSGQ 243 (763)
Q Consensus 237 lv~~~d~ 243 (763)
+....|.
T Consensus 247 ~sg~~ds 253 (350)
T KOG0641|consen 247 ASGHADS 253 (350)
T ss_pred eeccCCC
Confidence 7766554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=133.17 Aligned_cols=109 Identities=24% Similarity=0.481 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--------C-----ceEEEec-----CCCcEEEEEEccCCCEEEEEEcCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN--------W-----QRLWTIS-----PGKSVTSLCWRPDGKAIAVGLEDG 83 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--------~-----~~v~~~~-----~~~~V~~l~wspDG~~Lasg~~Dg 83 (763)
..|+++.|+|+|+++|+|+++|.|.+|... . ...|... |.+.|..++|+||+.++++|+.|+
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN 145 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc
Confidence 349999999999999999999999999975 2 2234332 778899999999999999999999
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
++++||+..|.....+..|...|..++|.|-++++++-+ .|+..+.+
T Consensus 146 s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s------~dr~~~~~ 192 (434)
T KOG1009|consen 146 SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS------SDRHPEGF 192 (434)
T ss_pred eEEEEEeccceeEeeccccccccceeecchhhhhhhhhc------cCccccee
Confidence 999999999999999999999999999999999999877 55544444
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.8e-12 Score=131.13 Aligned_cols=215 Identities=16% Similarity=0.151 Sum_probs=152.7
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecC-----CCcEEEEEEccCCCEEEEEEcC
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISP-----GKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~-----~~~V~~l~wspDG~~Lasg~~D 82 (763)
.++..+.+++- +|.+.+|.|+|. .+++++.....+.|++...++-.+.+ ...+.....+||+++||..+..
T Consensus 248 ~~lqS~~l~~f---Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~ 324 (514)
T KOG2055|consen 248 PKLQSIHLEKF---PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN 324 (514)
T ss_pred hhheeeeeccC---ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC
Confidence 34444445443 399999999998 88889999999999996666666652 2357788999999999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
|.|.|....+++.+.+++. .+.|..+.|+.+++.+..++ .+|.+.+||++.... .. .|++ +.+
T Consensus 325 G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~------~~GeV~v~nl~~~~~--~~------rf~D--~G~ 387 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASG------GTGEVYVWNLRQNSC--LH------RFVD--DGS 387 (514)
T ss_pred ceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEc------CCceEEEEecCCcce--EE------EEee--cCc
Confidence 9999999999999999875 78999999999998776665 699999999987411 11 1111 111
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee-------ee-----eccccc-------ccccCCCCCceeeec--
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK-------IN-----IHKFHV-------AIPNADEQGTCRLLN-- 221 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-------~~-----i~~~~~-------~~~s~~~~~~~~l~~-- 221 (763)
+.....+.+.++.+||+|+..|.|.||+.......+ +. +..+.. .+.+...+..+||-|
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 222344566788899999999999999854421111 10 000000 011333445555544
Q ss_pred ---------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ---------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ---------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.+++++|||.|.+|+++..++
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 4589999999999999886655
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-13 Score=134.42 Aligned_cols=152 Identities=20% Similarity=0.271 Sum_probs=122.6
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEe
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l 99 (763)
.|.++.|+|.. ++||+++.|+.|.+|++ .++++.++.-+..-+.|+|+|.+-.|.+|..|..++.+|+++ ...+..+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence 48899999966 78889999999999999 777888877777888999999888999999999999999986 5677888
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|.+.|..+.|+|.|+-+++|| .|++|++|+.....+.-.-+.... . ..++..++-+..++++
T Consensus 269 ~dhvsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~SRdiYhtkRM-q---------~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 269 KDHVSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGHSRDIYHTKRM-Q---------HVFCVKYSMDSKYIIS 332 (433)
T ss_pred cccceeEEEeccCCCcchhcccc------ccceEEEeecCCCcchhhhhHhhh-h---------eeeEEEEeccccEEEe
Confidence 89999999999999999999999 899999998875322111110000 0 0133345566678999
Q ss_pred EcCCCcEEEEE
Q 004298 180 GDKDGSICFNI 190 (763)
Q Consensus 180 gs~DG~I~lw~ 190 (763)
||.||+|++|-
T Consensus 333 GSdd~nvRlWk 343 (433)
T KOG0268|consen 333 GSDDGNVRLWK 343 (433)
T ss_pred cCCCcceeeee
Confidence 99999999995
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-12 Score=130.79 Aligned_cols=150 Identities=18% Similarity=0.109 Sum_probs=115.4
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC---CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN---GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~---g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
|..+|.-+.||++|++||+|+.|.+..||.+.. -+..+++.+|..+|..+.|+||.+++.+|+ .+..+++|
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg------~~e~~~lw 296 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG------FDEVLSLW 296 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC------chHheeec
Confidence 778999999999999999999999999999753 345788899999999999999999999998 67779999
Q ss_pred CCCCCC-CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCC
Q 004298 137 PPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQG 215 (763)
Q Consensus 137 d~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~ 215 (763)
|..+.- ..... ++ .+ .+. .++++.|++..+++|+.|++|..|+.+.-..+.....
T Consensus 297 Dv~tgd~~~~y~--~~-~~------~S~--~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv------------- 352 (519)
T KOG0293|consen 297 DVDTGDLRHLYP--SG-LG------FSV--SSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV------------- 352 (519)
T ss_pred cCCcchhhhhcc--cC-cC------CCc--ceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-------------
Confidence 987631 11111 11 11 122 2334557777899999999999998776554443211
Q ss_pred ceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 216 TCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 216 ~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+ +..|+++++++||++++.++.|+
T Consensus 353 --r--~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 353 --R--DPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred --c--cceeEEEEEcCCCcEEEEEeccc
Confidence 1 02478999999999999999887
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-11 Score=131.02 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=160.6
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc--eEEEecCCCcEEEEEEccCCCEEEEEEcCCc
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQ--RLWTISPGKSVTSLCWRPDGKAIAVGLEDGT 84 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~--~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~ 84 (763)
.+++.-+|-.-.|.+|.++|++.+.+.||++-.+|.|-+|++ +|- ++........|.+++|+ +|..|++.+.+|.
T Consensus 13 m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 13 MQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGS 91 (691)
T ss_pred eEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCce
Confidence 345555555555788999999999999999999999999999 443 23333356789999999 5567888999999
Q ss_pred EEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
|.-||+.+++.+..+....+.|++|+.+|.+..++.|+ +||.+.+++..+..-.... .+. ...-.
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc------ddGvl~~~s~~p~~I~~~r------~l~---rq~sR 156 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC------DDGVLYDFSIGPDKITYKR------SLM---RQKSR 156 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeec------CCceEEEEecCCceEEEEe------ecc---cccce
Confidence 99999999999999988889999999999998888887 7887777776653111110 111 11112
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCcee---eeeeeeccc---------------ccccccCCCCCceeeec-----
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFP---IGKINIHKF---------------HVAIPNADEQGTCRLLN----- 221 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~---ig~~~i~~~---------------~~~~~s~~~~~~~~l~~----- 221 (763)
.++..+++++..+++|+.||.|++|+...-. +.+..+..+ ...+.++...|.++.||
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 3556677888889999999999999754421 111111111 12234777889999998
Q ss_pred ---------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ---------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ---------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+-|.+++-++++.++++++-|+
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence 4588888899988888887765
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=138.90 Aligned_cols=178 Identities=21% Similarity=0.215 Sum_probs=138.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|+++++.--++++.+|+.|.+++||+. +|+....+. |...|.++...+ ..+.+|+.|.+|++|+++++..++.+
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEe
Confidence 45999999887899999999999999999 888888887 778888887644 57888999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|.++|.++..+ +..+++|+ .|+++++|++.+ .++.....+|+..+ ..+ ...+. +.+++
T Consensus 328 ~~h~~~V~~v~~~--~~~lvsgs------~d~~v~VW~~~~--~~cl~sl~gH~~~V-------~sl--~~~~~-~~~~S 387 (537)
T KOG0274|consen 328 RGHTGPVNCVQLD--EPLLVSGS------YDGTVKVWDPRT--GKCLKSLSGHTGRV-------YSL--IVDSE-NRLLS 387 (537)
T ss_pred ccccccEEEEEec--CCEEEEEe------cCceEEEEEhhh--ceeeeeecCCcceE-------EEE--EecCc-ceEEe
Confidence 9999999999988 77888888 899999999984 23333344555544 112 22232 78999
Q ss_pred EcCCCcEEEEEcCce--eeeeeeecccc--------cccccCCCCCceeeec
Q 004298 180 GDKDGSICFNIFGIF--PIGKINIHKFH--------VAIPNADEQGTCRLLN 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~~--~ig~~~i~~~~--------~~~~s~~~~~~~~l~~ 221 (763)
|+.|++|++|++... .+..+..+... ....+++.++.+++|+
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEee
Confidence 999999999998776 22222222211 1224677899999997
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-12 Score=140.37 Aligned_cols=113 Identities=32% Similarity=0.514 Sum_probs=98.9
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceE--------EEe-cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEcc
Q 004298 23 QIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRL--------WTI-SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v--------~~~-~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve 91 (763)
-|+.+.|+| |...||++++||.|.+|++..+-+ ..+ .|+.+|+++.|+| -...||+++.|-+|+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 488999999 668999999999999999932211 111 2788999999999 56799999999999999999
Q ss_pred CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
+++...++.+|++.|..++|+|+|+.+++.+ .|++++++..+..
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc------KDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVC------KDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeee------cCceEEEeCCCCC
Confidence 9999999999999999999999999999988 8999999998764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=129.83 Aligned_cols=115 Identities=18% Similarity=0.379 Sum_probs=96.8
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCc---eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 16 FDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQ---RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~---~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
|.+. |-.++|||+. ..+|+|+.||+|+||++ .+. .+..-.|+.-|+.|.|+-+-.+||+|++||+++|||+
T Consensus 256 H~~S----VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 256 HTKS----VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred cccc----hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 5555 8999999976 78999999999999999 442 3444458889999999998889999999999999999
Q ss_pred cC---CeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCC
Q 004298 91 EN---GKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~---g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++ ++.+.+++.|..+|+++.|+|... .+++++ .|..+.+||+.-
T Consensus 332 R~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg------~D~QitiWDlsv 379 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG------EDNQITIWDLSV 379 (440)
T ss_pred hhccCCCcceeEEeccCCeeEEEeccccCceEEecc------CCCcEEEEEeec
Confidence 74 678899999999999999999653 445555 799999998753
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=126.87 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=132.7
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEEccC-----------------ceEEEec-CCCcEEEEEEccC-CCEEEEEEc
Q 004298 23 QIKIAEWNPE--KDLLAMATEDSKILLHRFNW-----------------QRLWTIS-PGKSVTSLCWRPD-GKAIAVGLE 81 (763)
Q Consensus 23 ~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~-----------------~~v~~~~-~~~~V~~l~wspD-G~~Lasg~~ 81 (763)
.|..+.-+|- ..+.|+-+..|.|.||++.. .+++++. |+..=.+|+|||- .-.|++|.-
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 3555665554 46778888999999999732 2455554 6777899999992 225788888
Q ss_pred CCcEEEEEccCCeEE---EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 82 DGTITLHDVENGKLL---RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 82 Dg~V~lwdve~g~~~---~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
-+.|++|...+|... ..+.+|+..|-.+.|+|... .+++|| -|++|++||++....+..-....+
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS------~DgsIrIWDiRs~~~~~~~~~kAh----- 301 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS------CDGSIRIWDIRSGPKKAAVSTKAH----- 301 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee------cCceEEEEEecCCCccceeEeecc-----
Confidence 889999999887654 33668999999999999764 678888 899999999987422211111111
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
...++.++| +.+..+|++|+.||+++||+++.|..++. -..++-+.++|+++.|+|.-...+
T Consensus 302 --~sDVNVISW--nr~~~lLasG~DdGt~~iwDLR~~~~~~p--------------VA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 302 --NSDVNVISW--NRREPLLASGGDDGTLSIWDLRQFKSGQP--------------VATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred --CCceeeEEc--cCCcceeeecCCCceEEEEEhhhccCCCc--------------ceeEEeccCCeeEEEeccccCceE
Confidence 122334444 34555899999999999999988876621 123445557899999998655544
Q ss_pred EEe
Q 004298 238 VLC 240 (763)
Q Consensus 238 v~~ 240 (763)
.++
T Consensus 364 aas 366 (440)
T KOG0302|consen 364 AAS 366 (440)
T ss_pred Eec
Confidence 443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.5e-12 Score=129.17 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=133.8
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcc----Cc---eEEEe----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFN----WQ---RLWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~----~~---~v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
|..+.|.++.. .+|+|+.|..|++|.++ ++ .+--. .|...|+++.|+|+|..||+|+++|.|.+|-..
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 99999999775 99999999999999982 33 23222 278899999999999999999999999999765
Q ss_pred --------C--------CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 92 --------N--------GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 92 --------~--------g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
+ ......+++|...|..++|+|++.++++++ .|.++++||.... .+......|...
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s------~dns~~l~Dv~~G--~l~~~~~dh~~y 167 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS------VDNSVRLWDVHAG--QLLAILDDHEHY 167 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee------ccceEEEEEeccc--eeEeeccccccc
Confidence 2 224456788999999999999999999998 8999999998763 121222233322
Q ss_pred ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeee-cccccccccCCCCCceeeecc-----ceeeEEe
Q 004298 156 TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINI-HKFHVAIPNADEQGTCRLLNA-----SIYKVAL 229 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i-~~~~~~~~s~~~~~~~~l~~~-----~I~~v~~ 229 (763)
+ ...++++-..++++-+.|...+.+.......+..-- ..++...........+|+++. -...++|
T Consensus 168 v---------qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 168 V---------QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred c---------ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 2 112334445567776767655554433322221100 011111112223345666652 3567899
Q ss_pred cCCCCEEEEE
Q 004298 230 SKDLFHLTVL 239 (763)
Q Consensus 230 SpDg~~Llv~ 239 (763)
+|||..|+.-
T Consensus 239 TPdG~llvtP 248 (434)
T KOG1009|consen 239 TPDGSLLVTP 248 (434)
T ss_pred CCCCcEEEcc
Confidence 9999877653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=126.28 Aligned_cols=162 Identities=18% Similarity=0.255 Sum_probs=125.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceE---------------------------------------EEec-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRL---------------------------------------WTIS- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v---------------------------------------~~~~- 59 (763)
+.|.+++|+|.+.++++++.|++-.||+. +|..- ..+.
T Consensus 191 GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg 270 (481)
T KOG0300|consen 191 GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG 270 (481)
T ss_pred cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec
Confidence 45999999999999999999999999994 33210 0010
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|...|.+..|-..|+.+++++.|.+-.+||+++|+.++.+.+|....+.++-+|+.+++++.+ .|.+.++||.+
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS------rDtTFRLWDFR 344 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS------RDTTFRLWDFR 344 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec------cCceeEeccch
Confidence 223478888999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce--eeeeee
Q 004298 140 PRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF--PIGKIN 200 (763)
Q Consensus 140 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~--~ig~~~ 200 (763)
+.++.. ..+.||+..+ .... + ...+.+++|+.|.+|++|++... ++.++.
T Consensus 345 eaI~sV-~VFQGHtdtV-------TS~v--F-~~dd~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 345 EAIQSV-AVFQGHTDTV-------TSVV--F-NTDDRVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred hhccee-eeecccccce-------eEEE--E-ecCCceeecCCCceEEEeeeccccCcceeee
Confidence 754332 2234554433 1111 2 23356899999999999986643 444443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=126.26 Aligned_cols=201 Identities=9% Similarity=0.116 Sum_probs=138.7
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
++|.+++=+|.. ..+|+|+.||.|.+|++ .-..++.+. |.+.|.+|++.. ..++++++|.+|+.|.++ |..+++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~t 143 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHT 143 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCccee
Confidence 569999999987 89999999999999999 556677776 778999999987 678888999999999854 233333
Q ss_pred ec---------------------------------------ccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCC
Q 004298 99 LK---------------------------------------SHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 99 l~---------------------------------------~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+. .....|.++.|+|... .+++++ .|+.+.++|.
T Consensus 144 ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~------sDrsIvLyD~ 217 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA------SDRSIVLYDL 217 (433)
T ss_pred eeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeec------cCCceEEEec
Confidence 32 1123345555555443 445555 7999999999
Q ss_pred CCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee--e----------eeeeeccccc
Q 004298 139 APRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP--I----------GKINIHKFHV 206 (763)
Q Consensus 139 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~--i----------g~~~i~~~~~ 206 (763)
+...+ +....- ....+.++ ++|....+++|++|.+++.++..... . -.++......
T Consensus 218 R~~~P-l~KVi~---------~mRTN~Is--wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 218 RQASP-LKKVIL---------TMRTNTIC--WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred ccCCc-cceeee---------ecccccee--cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence 86322 111110 11112234 44577789999999999988754321 1 1222223333
Q ss_pred ccccCCCCCceeeec---------------cceeeEEecCCCCEEEEEeecC
Q 004298 207 AIPNADEQGTCRLLN---------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 207 ~~~s~~~~~~~~l~~---------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+++.|+++|++. ..|.++.||.|.++++.++.+.
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 456888999999986 4689999999999888776554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=122.81 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=133.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC--CCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC-C---e
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP--GKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN-G---K 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~-g---~ 94 (763)
..+..++|+|.-..+|+++.|..|++|+-+....-.+++ ...|+|++|+| .++-|++|+..| |+||.... + .
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 347889999988899999999999999987665555553 46799999999 567889998766 78998652 2 2
Q ss_pred EE----------EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CCCCCcccCCcccccCCcccc
Q 004298 95 LL----------RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 95 ~~----------~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~ 163 (763)
.+ .+.++| .+|++|.|++||..+++++ +.+..+++||..+.. .+++. .+-.++.
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS-----~gsssi~iWdpdtg~~~pL~~--~glgg~s------- 242 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTAS-----FGSSSIMIWDPDTGQKIPLIP--KGLGGFS------- 242 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecc-----cCcceEEEEcCCCCCcccccc--cCCCcee-------
Confidence 11 112234 6899999999999999988 679999999987642 12220 1111221
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEE-EcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFN-IFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw-~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
-+ .++|++++|..++-|+..++| ...+...-+.... .+.|...+|||+|+.|++++.+
T Consensus 243 -lL--kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg------------------sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 243 -LL--KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG------------------SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred -eE--EEcCCCCEEEEecccceeeeehhcccceecceecc------------------CCceeeeeecCCCCEEEEEEcC
Confidence 12 356888999999999999999 4444333332111 1357789999999999999987
Q ss_pred C
Q 004298 243 Q 243 (763)
Q Consensus 243 ~ 243 (763)
.
T Consensus 302 s 302 (445)
T KOG2139|consen 302 S 302 (445)
T ss_pred C
Confidence 5
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=122.38 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=139.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc-cCCeE-
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV-ENGKL- 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv-e~g~~- 95 (763)
.|++.+|++++..+|++.+...|.||+..++..|... |...|++|+|+|.+..|++++.|..-++|.. ..|+.
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 4999999999999999999999999999766666543 7789999999999999999999999999998 44443
Q ss_pred -EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCC
Q 004298 96 -LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 96 -~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
.-.+..++...+|+.|+|....+++|+ .-+.+-+|-......= .......+.+.+ .+.++++
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgS------gar~isVcy~E~ENdWWVsKhikkPirStv---------~sldWhp 156 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGS------GARLISVCYYEQENDWWVSKHIKKPIRSTV---------TSLDWHP 156 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEecc------CccEEEEEEEecccceehhhhhCCccccce---------eeeeccC
Confidence 334556788999999999999999998 5666666543321000 000000111111 3345667
Q ss_pred CeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCce----eeeccceeeEEecCCCCEEEEEeecCcc
Q 004298 173 RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTC----RLLNASIYKVALSKDLFHLTVLCSGQLS 245 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~----~l~~~~I~~v~~SpDg~~Llv~~~d~l~ 245 (763)
+.-+|+.|+.|++.+++-.-...+..- ..+.+-.+.-..|.+ ..-.+.++.+.|||+|..|..+..|+.+
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdek---pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEK---PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccC---CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 878999999999999873111111111 111110000000000 0112568899999999999999988754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-11 Score=115.88 Aligned_cols=190 Identities=13% Similarity=0.142 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC--CeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN--GKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~--g~~~ 96 (763)
..+|..++.+-|...+++|+.|..|.+|+. +|+.+..+. |...|+.++|+.+...+++|+-|.++++||-++ -+++
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc
Confidence 446999999999999999999999999999 677677775 889999999999999999999999999999764 3344
Q ss_pred EEeccc--------------------------------------CCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 97 RSLKSH--------------------------------------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 97 ~~l~~h--------------------------------------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+.+... ..+|+|+.|+++++....++ .|+++++.|.
T Consensus 139 Qildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~------l~stlrLlDk 212 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS------LDSTLRLLDK 212 (307)
T ss_pred chhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee------ccceeeeccc
Confidence 333321 24677777777777665555 6777777765
Q ss_pred CCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCce
Q 004298 139 APRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTC 217 (763)
Q Consensus 139 ~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~ 217 (763)
.+ .++.....||.... ..+.++.......+++|++||.|++|+.-.- .+-+...+. .
T Consensus 213 ~t--GklL~sYkGhkn~e-------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-----------~-- 270 (307)
T KOG0316|consen 213 ET--GKLLKSYKGHKNME-------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-----------T-- 270 (307)
T ss_pred ch--hHHHHHhcccccce-------eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-----------c--
Confidence 54 22222222332211 1133445566678999999999999984322 222221111 0
Q ss_pred eeeccceeeEEecCCCCEEEEEeec
Q 004298 218 RLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 218 ~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.-+.++++.|....+++++.+
T Consensus 271 ----v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 271 ----VIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred ----eeEEeeecccCccceeEecCC
Confidence 016678888887777776543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=120.49 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=97.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecC---------------------------------------
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP--------------------------------------- 60 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--------------------------------------- 60 (763)
.+.|++++.+-+.+.+++|+.|.++++|+. +|+.+...+.
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 355999999999999999999999999999 7765544321
Q ss_pred ---------------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-eEEEEecccCCceeEEEeecCCCceeccCCC
Q 004298 61 ---------------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGN 124 (763)
Q Consensus 61 ---------------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~ 124 (763)
...++..-|.|-|++|++|..||.|.+||+++| +.+.+.+.|...|+.|.++++..++++++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-- 209 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-- 209 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc--
Confidence 123788899999999999999999999999998 55666788999999999999999999999
Q ss_pred CCcccCCceeecCCCC
Q 004298 125 IPTYEDRTSRFFPPAP 140 (763)
Q Consensus 125 ~~~~~d~~i~~wd~~~ 140 (763)
.|.+.++||.+.
T Consensus 210 ----~Dttakl~D~~t 221 (327)
T KOG0643|consen 210 ----KDTTAKLVDVRT 221 (327)
T ss_pred ----cCccceeeeccc
Confidence 899999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=127.15 Aligned_cols=194 Identities=18% Similarity=0.203 Sum_probs=134.1
Q ss_pred eecCCCCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEEccCc----eEEEe-------------------cCCCc
Q 004298 14 LQFDKPVASQIKIAEWNP-------EKDLLAMATEDSKILLHRFNWQ----RLWTI-------------------SPGKS 63 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP-------~~~lLA~~s~Dg~V~v~~l~~~----~v~~~-------------------~~~~~ 63 (763)
.+|+--+|..-.|++|-. .|+++|+|+.|..|.||++.-. +...+ .|...
T Consensus 166 vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda 245 (463)
T KOG0270|consen 166 VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA 245 (463)
T ss_pred EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHH
Confidence 445555566667888843 3689999999999999998311 00111 13345
Q ss_pred EEEEEEccCC-CEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCC
Q 004298 64 VTSLCWRPDG-KAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 64 V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
|.++.|+-+- ..||+|+.|.+|++||+.+|++..++..|...|.++.|+|.. ..+.+|+ .|+++++.|.+..
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs------~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS------YDGTVALKDCRDP 319 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc------ccceEEeeeccCc
Confidence 6788888754 489999999999999999999999999999999999999865 5778888 8999999999851
Q ss_pred CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeec
Q 004298 142 IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 142 ~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
.. ......+ ...+..+.|.++.. +.+++++.||+++-++.+... ..--+++.++
T Consensus 320 -~~----s~~~wk~----~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~----------------~~vwt~~AHd 373 (463)
T KOG0270|consen 320 -SN----SGKEWKF----DGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPG----------------KPVWTLKAHD 373 (463)
T ss_pred -cc----cCceEEe----ccceEEEEecCCCc-eeEEEecCCceEEeeecCCCC----------------CceeEEEecc
Confidence 11 1111111 12334455655443 578888999999988765431 0112344455
Q ss_pred cceeeEEecCCCCEEEEE
Q 004298 222 ASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~ 239 (763)
++|..+++++.-..+++.
T Consensus 374 ~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST 391 (463)
T ss_pred CCcceEEecCCCCcceee
Confidence 667777777665555544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-11 Score=118.76 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCC----CEEEEEeCCCeEEEEEc-cCceEEEe-cCCCcEEEEEEccC-CCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEK----DLLAMATEDSKILLHRF-NWQRLWTI-SPGKSVTSLCWRPD-GKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~----~lLA~~s~Dg~V~v~~l-~~~~v~~~-~~~~~V~~l~wspD-G~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..-..++|+-+. .++|+++.-|.|+|.+. .++....+ .||..|+.|.+.|+ .+++.+|+.|.+|++|++++..
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 335678887754 47888999999999999 45544444 39999999999995 5799999999999999999999
Q ss_pred EEEEec---ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 95 LLRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 95 ~~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
++..+- +|.+.|.++.|+++|.++++++ .|.++++|++.
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG------mDhslk~W~l~ 211 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCG------MDHSLKLWRLN 211 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccC------CcceEEEEecC
Confidence 988864 6899999999999999999999 89999999876
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-11 Score=118.36 Aligned_cols=163 Identities=16% Similarity=0.217 Sum_probs=115.1
Q ss_pred CCeEEEEEcCCCC--EEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKD--LLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~--lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|+++.|.|.-. .|.+|++||.|.+||. .|..+-.++ |.+.|+.++.+|.|++-.+.+.|+.+++|++-+|+...
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 5699999998764 7889999999999999 888887776 77789999999999999999999999999999888765
Q ss_pred EecccCCceeEEEeecCCCceeccCCC---------------------------------CCcccCCceeecCCCCCCCC
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGN---------------------------------IPTYEDRTSRFFPPAPRIPQ 144 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~---------------------------------~~~~~d~~i~~wd~~~~~~~ 144 (763)
.++- ...-+.+.|+|.|.+++.++.+ ..+.+|+.+++||.....+
T Consensus 164 v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~- 241 (362)
T KOG0294|consen 164 VLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTP- 241 (362)
T ss_pred eecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCcc-
Confidence 5543 2233448888888755443211 0111345555555543110
Q ss_pred CCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 145 MPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 145 l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+....+ .++.+..+.....+...+|+++++||.|++|+.++-
T Consensus 242 -~~~~~A-------H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 -LTEFLA-------HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -ceeeec-------chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 000111 122333444444566789999999999999998765
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=120.02 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=122.0
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccC---CCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPD---GKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspD---G~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
-..|..+-|-| |.-.+.+++.|.+++||+. +-|....++-.+.|.+-+|+|= -.++|+|..|-.|++.|+.+|..
T Consensus 101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 35699999999 4467788999999999999 6677888888889999999993 44889999999999999999999
Q ss_pred EEEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCC---CCCCcccCCcccc----cCCccccccee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIP---QMPGLVSGDTGFT----DDSEDSFRELA 167 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~---~l~~~~s~~~~~~----~~~~~~~~~~~ 167 (763)
-|++.+|...|.++.|+|...+ +++|+ -|+.+|+||++.... .+..+. +....+ ......+ ..
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRrasgcf~~lD~hn-~k~~p~~~~n~ah~gkv--ng 251 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRASGCFRVLDQHN-TKRPPILKTNTAHYGKV--NG 251 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecC------CCceEEEEEeecccceeEEeeccc-CccCcccccccccccee--ee
Confidence 9999999999999999998875 56777 899999999875311 111110 000000 0001112 22
Q ss_pred cccCCCeeEEEEEcCCCcEEEEE
Q 004298 168 NSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
.++..++.++++++.|.++++|.
T Consensus 252 la~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eeecccchhhhhccCccceEEee
Confidence 33456777899999999999996
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=126.33 Aligned_cols=203 Identities=15% Similarity=0.217 Sum_probs=140.8
Q ss_pred ccccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC------------------------
Q 004298 6 AMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG------------------------ 61 (763)
Q Consensus 6 ~~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~------------------------ 61 (763)
.++.+..++...|. .|.+++|+.+|.++|+|+.|..|.+|...-+-+...+|+
T Consensus 41 ndG~llqtLKgHKD---tVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFg 117 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKD---TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFG 117 (1081)
T ss_pred CCcccccccccccc---eEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcc
Confidence 44555556654444 499999999999999999999999999743333333222
Q ss_pred ---------------CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec---ccCCceeEEEeecCCC-----ce
Q 004298 62 ---------------KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK---SHTVAVVCLNWEEDAQ-----PS 118 (763)
Q Consensus 62 ---------------~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~---~h~~~V~~l~ws~~~~-----~l 118 (763)
.+|.+.+|..||+++|.|-.||+|.|-+ .+|+..-.+. +.+++|++++|+|+.. .+
T Consensus 118 lWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 118 LWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred ccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 2378889999999999999999999986 3455444443 3568999999999753 22
Q ss_pred eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK 198 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~ 198 (763)
+... +..++.|+....+. -+. +..-.++..+....+++.+++.|+.||.++++.-+....|+
T Consensus 197 aV~D------W~qTLSFy~LsG~~-------Igk-----~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGT 258 (1081)
T KOG1538|consen 197 AVAD------WGQTLSFYQLSGKQ-------IGK-----DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGT 258 (1081)
T ss_pred EEEe------ccceeEEEEeccee-------ecc-----cccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEee
Confidence 2222 45555555444321 000 01112333444556889999999999999999766666666
Q ss_pred eeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccc
Q 004298 199 INIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEE 248 (763)
Q Consensus 199 ~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~ 248 (763)
+- . .+..|.+++..|++++..++|.|+.+.|.
T Consensus 259 vg-----------~-------~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 259 VG-----------E-------QDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred cc-----------c-------cceeEEEEEEccCCceEEEEEccCeeehh
Confidence 51 1 23468899999999999999999855443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=131.54 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=130.1
Q ss_pred CEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEee
Q 004298 34 DLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws 112 (763)
+.++.++.||.+.+.+-++..-..+. |...+.|-+|+|||.-|.+++.||.|++|. ++|-...++-....+|.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 68889999999887776665444444 778899999999999999999999999998 5666555555556799999999
Q ss_pred cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 113 EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 113 ~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
|+...+..+. .+.+.+=++.+.... -....|.+.+ ++..+++..+++++|++|-+.++|+--
T Consensus 155 p~S~~vl~c~-------g~h~~IKpL~~n~k~--i~WkAHDGii---------L~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 155 PNSNSIVFCQ-------GGHISIKPLAANSKI--IRWRAHDGLV---------LSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred CCCCceEEec-------CCeEEEeecccccce--eEEeccCcEE---------EEeecCccccceeecCCceeEEeeccc
Confidence 9987666553 344444333322111 1123455655 566677888999999999999999732
Q ss_pred ceeeeeeeecccccccccCCCCCceeeec-----------cceeeEEecCCCCEEEEEeecC
Q 004298 193 IFPIGKINIHKFHVAIPNADEQGTCRLLN-----------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 193 ~~~ig~~~i~~~~~~~~s~~~~~~~~l~~-----------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.-+.-+-..+..+....+-..+..+-+|. ++|..++||+||+++.+++..+
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred CcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCc
Confidence 22221111222222211122222233332 7899999999999999988765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=127.10 Aligned_cols=191 Identities=16% Similarity=0.105 Sum_probs=143.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.++|+++.|.-....+++|+.|.+|++|++ +.....++.++..+..|+.+ +..+++|..|++|+.||++++.+....
T Consensus 261 tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv 338 (459)
T KOG0288|consen 261 TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV 338 (459)
T ss_pred ccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe
Confidence 467999999877766999999999999999 65566667788888888887 578999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..+ +.|+++..++++..+.+++ .|.++++.|.+..--.. ..+ ..++.. ..+.....++|++.++++
T Consensus 339 ~~g-g~vtSl~ls~~g~~lLsss------RDdtl~viDlRt~eI~~--~~s-A~g~k~----asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 339 PLG-GRVTSLDLSMDGLELLSSS------RDDTLKVIDLRTKEIRQ--TFS-AEGFKC----ASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred ecC-cceeeEeeccCCeEEeeec------CCCceeeeecccccEEE--Eee-cccccc----ccccceeEECCCCceeee
Confidence 876 5999999999999888887 89999999988741111 111 111111 111223446788999999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
|+.||.|+||....-++-..--. .+. +..|.+++|+|.|.+|+.+..+
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~--------s~s-------~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSL--------STS-------NAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ccCCCcEEEEEccCceEEEEecc--------CCC-------CcceEEEEEcCCCchhhcccCC
Confidence 99999999998655444333100 000 1248899999999999877543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-11 Score=117.29 Aligned_cols=207 Identities=15% Similarity=0.116 Sum_probs=143.2
Q ss_pred cCCCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc-cCc------eEEE------ec----CCCcEEEEEEcc-CCCEE
Q 004298 16 FDKPVASQIKIAEWNP-EKDLLAMATEDSKILLHRF-NWQ------RLWT------IS----PGKSVTSLCWRP-DGKAI 76 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~------~v~~------~~----~~~~V~~l~wsp-DG~~L 76 (763)
+.++..+.|..+...| .|+++.+|+.||.|.||++ +.. .+.+ .. |.-.|..+-|-| |.-++
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4456667899999998 4699999999999999999 221 1111 11 333689999999 77799
Q ss_pred EEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCC---CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 77 AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA---QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~---~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
.+++-|.++++||..+-+....|+. ++.|..-+|+|-. -++++|- .+-.+++.|+... ......+||.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gt------r~~~VrLCDi~SG--s~sH~LsGHr 188 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGT------RDVQVRLCDIASG--SFSHTLSGHR 188 (397)
T ss_pred ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEec------CCCcEEEEeccCC--cceeeecccc
Confidence 9999999999999999888888865 6889999999854 3566665 7889999998763 2222234443
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
. .+-.+.|++... -+|++|+.||.|++|+.+.-. ....+.++...++. ..+-.-+.+.+..++|+.
T Consensus 189 ~-------~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~----~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 189 D-------GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI----LKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred C-------ceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCcc----ccccccccceeeeeeecc
Confidence 3 233455655444 489999999999999865321 11222222111110 000012336788999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
||.+++..+.++
T Consensus 257 d~~~l~~~gtd~ 268 (397)
T KOG4283|consen 257 DARYLASCGTDD 268 (397)
T ss_pred cchhhhhccCcc
Confidence 999999988776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-10 Score=118.30 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEec
Q 004298 24 IKIAEWNPEKDLL-AMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 24 V~~l~~sP~~~lL-A~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+..++|+|++..+ ++++.++.|.+|+. +++.+..+..+..+..++|+|+|+.++++ +.|+.|++||+++++.+..+.
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP 112 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence 6779999999876 56678899999999 45555556555557789999999987665 468999999999988888775
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccC-CceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE-E
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYED-RTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL-C 178 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d-~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L-~ 178 (763)
. ...+.++.|+|++..+++++ .+ ..+.+|+...... ......+ .....+ .+++++..+ +
T Consensus 113 ~-~~~~~~~~~~~dg~~l~~~~------~~~~~~~~~d~~~~~~-~~~~~~~---------~~~~~~--~~s~dg~~l~~ 173 (300)
T TIGR03866 113 V-GVEPEGMAVSPDGKIVVNTS------ETTNMAHFIDTKTYEI-VDNVLVD---------QRPRFA--EFTADGKELWV 173 (300)
T ss_pred C-CCCcceEEECCCCCEEEEEe------cCCCeEEEEeCCCCeE-EEEEEcC---------CCccEE--EECCCCCEEEE
Confidence 3 34578899999999888776 33 3455667653210 0000000 001112 234555555 4
Q ss_pred EEcCCCcEEEEEcCce
Q 004298 179 SGDKDGSICFNIFGIF 194 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~ 194 (763)
++..+|.|++|+....
T Consensus 174 ~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 174 SSEIGGTVSVIDVATR 189 (300)
T ss_pred EcCCCCEEEEEEcCcc
Confidence 5556999999987654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=130.02 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=145.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc------------CceEEEecC------------------------------
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN------------WQRLWTISP------------------------------ 60 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~------------~~~v~~~~~------------------------------ 60 (763)
+-+.++|.|+|..|.+++.||.|++|..+ +..+..+.+
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeee
Confidence 47789999999999999999999999862 122222210
Q ss_pred -CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 61 -GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 61 -~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.-++++++++-+|+++|.|++|-.|++.++.++....++++|.++|.++.++|++.++++.+ -||.+++|++.
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss------~dG~v~iw~~~ 168 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS------CDGKVQIWDLQ 168 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe------cCceEEEEEcc
Confidence 01478999999999999999999999999999999999999999999999999999999987 79999999987
Q ss_pred CCC--CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCc
Q 004298 140 PRI--PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGT 216 (763)
Q Consensus 140 ~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~ 216 (763)
... ..+++. .....+. ....+ ....++|++..++....|+.|++|....+.. ..+. .
T Consensus 169 ~~~~~~tl~~v-~k~n~~~--~s~i~--~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~------------- 228 (933)
T KOG1274|consen 169 DGILSKTLTGV-DKDNEFI--LSRIC--TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--D------------- 228 (933)
T ss_pred cchhhhhcccC-Ccccccc--cccee--eeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--c-------------
Confidence 631 111111 0111111 01112 2344567766777778899999986444321 1111 0
Q ss_pred eeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 217 CRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 217 ~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
......+..++|||+|+||++++.++ .|.++..++
T Consensus 229 -~~~ss~~~~~~wsPnG~YiAAs~~~g------------~I~vWnv~t 263 (933)
T KOG1274|consen 229 -KLSSSKFSDLQWSPNGKYIAASTLDG------------QILVWNVDT 263 (933)
T ss_pred -cccccceEEEEEcCCCcEEeeeccCC------------cEEEEeccc
Confidence 00112266899999999999988766 788888886
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.4e-10 Score=112.28 Aligned_cols=215 Identities=11% Similarity=-0.001 Sum_probs=141.8
Q ss_pred cccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcC
Q 004298 7 MRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATE--DSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 7 ~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~--Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D 82 (763)
+++++.++...|- +|..+.|--...-+..++. |.+|+.-++ +.+.+.-+. |.+.|++|+.+|-+..+++++.|
T Consensus 45 ~g~~~~ti~skky---G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D 121 (311)
T KOG1446|consen 45 SGKQVKTINSKKY---GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD 121 (311)
T ss_pred CCceeeEeecccc---cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccC
Confidence 3444444443332 3666777554444444444 788999998 445555555 88999999999988999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~ 161 (763)
++|++||++..++..-+.. ..-..++|.|.|-.+|.+. ....|+++|.+.. ..+.. .|.-....
T Consensus 122 ~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~------~~~~IkLyD~Rs~dkgPF~-------tf~i~~~~ 186 (311)
T KOG1446|consen 122 KTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALAN------GSELIKLYDLRSFDKGPFT-------TFSITDND 186 (311)
T ss_pred CeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEec------CCCeEEEEEecccCCCCce-------eEccCCCC
Confidence 9999999998777766643 3445678999999999887 4559999998863 11110 11100011
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEE-cCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNI-FGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~-~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
........++++|+.|+.++..+.+++.+ ++.-...++........ -....+|+||+++++.+.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~---------------~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN---------------LPLSATFTPDSKFVLSGS 251 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC---------------cceeEEECCCCcEEEEec
Confidence 11222344678999999999999988775 33334444432221110 013679999999999887
Q ss_pred ecCccccccCCCCCCcEEEEEeeccc
Q 004298 241 SGQLSQEELGGHGMHGLHCLVLDTSI 266 (763)
Q Consensus 241 ~d~l~~~~~~~~~~~~l~~~~ld~~~ 266 (763)
.|+ .++++.+++..
T Consensus 252 ~dg------------~i~vw~~~tg~ 265 (311)
T KOG1446|consen 252 DDG------------TIHVWNLETGK 265 (311)
T ss_pred CCC------------cEEEEEcCCCc
Confidence 766 78888776653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=129.63 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=117.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS-----KILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.+++.||+++++|+++... .|++|+. +|..+..+. |.-.|+.++|||||++|++.+.|.++.+|...+..
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 5799999999999999987543 5889998 787777665 77889999999999999999999999999975332
Q ss_pred ----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CCCCCcccCCcccccCCcccccceecc
Q 004298 95 ----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 95 ----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
.....+.|...|..+.|+|++.+++++| .|+++++|...... ..+.. .. ...+ ...+..+.+.
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~~~d~~i~~-~a-~~~~----~~aVTAv~~~ 673 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPDLRDKYISR-FA-CLKF----SLAVTAVAYL 673 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccCchhhhhhh-hc-hhcc----CCceeeEEee
Confidence 1233678999999999999999999999 99999999654320 00100 00 0000 0111112222
Q ss_pred ---cCCCeeEEEEEcCCCcEEEEEcC
Q 004298 170 ---SHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 170 ---~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
......++++|...|.|.+|...
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccccccccceEEEEecccEEEEEecc
Confidence 23455689999999999999744
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=117.52 Aligned_cols=115 Identities=16% Similarity=0.338 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT--EDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~~ 97 (763)
.|.+++|+|+++.+|+.. .++.|.+|+++++++..+. ...++.+.|+|+|++|++|+. .|.|.+||+++.+.+.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 399999999999887654 5678999999999998886 456789999999999999874 4679999999999988
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+.. | ..++.+.|+|+|++++++......-.|..+++|+...
T Consensus 140 ~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 140 TFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 774 3 3578999999999999876332233577888888754
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=131.12 Aligned_cols=181 Identities=15% Similarity=0.215 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+.+++++-+|.++|.|+.|-.|++-+. +......+ .|..+|.++.|+|.|++||+.+-||.|++||++++.+.+++.+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence 889999999999999999999999998 44444444 5889999999999999999999999999999999998877754
Q ss_pred c--------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCcccccceecccC
Q 004298 102 H--------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 102 h--------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
- ...+..++|+|++..++..+ .|+.|++++...-. ..+.. . .. ...+..+. ++
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------~d~~Vkvy~r~~we~~f~Lr~----~--~~---ss~~~~~~--ws 241 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPP------VDNTVKVYSRKGWELQFKLRD----K--LS---SSKFSDLQ--WS 241 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeec------cCCeEEEEccCCceeheeecc----c--cc---ccceEEEE--Ec
Confidence 2 24567789999966555544 58999998766421 11110 0 00 01122333 45
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
|+|.+||+++-||.|.+|+.+....+.. ...|.+++|-|+...+-+....
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~~~~~---------------------~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHERHEF---------------------KRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccchhccc---------------------cceeEEEecCCCCCeeEEEeec
Confidence 7799999999999999999776222111 1247788999988877766543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-11 Score=129.45 Aligned_cols=157 Identities=22% Similarity=0.223 Sum_probs=126.2
Q ss_pred CCCeEEEEE-cCCCCEEEEEeCCCeEEEEEccCc---eEEEec----------CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 21 ASQIKIAEW-NPEKDLLAMATEDSKILLHRFNWQ---RLWTIS----------PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 21 ~~~V~~l~~-sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~----------~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
.+.|+|++. -++..++|+|+-|+.|.+|+++.. .+..++ +...|.+++.++.|..|++|+..+.++
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 356999999 888999999999999999999532 333322 446799999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+||.++++-+.++++|+..|.++..++||+.+.++| .|++|++||+..+.... ....|.. .. -
T Consensus 197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s------SDgtIrlWdLgqQrCl~--T~~vH~e-------~V--W 259 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS------SDGTIRLWDLGQQRCLA--TYIVHKE-------GV--W 259 (735)
T ss_pred EeccccccceeeeeccccceEEEEEcCCCCeEeecC------CCceEEeeeccccceee--eEEeccC-------ce--E
Confidence 999999999999999999999999999999999998 89999999998742211 1111111 11 1
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
.+..++.+..+.+|+.||.|..-+...+
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCc
Confidence 2334588899999999999998876664
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=113.95 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|+.|..+-||-..+.+.+++.|++|++|+. ++.++.++..+..|+++..++||++|.++. .+.|+.||..+-..+..+
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeec
Confidence 577999999998888888899999999999 899999999999999999999999887775 467999999998888887
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
+. ...|.+.+.+|+...++.|+ +|..+.-||..+.. .+.....++-+.+ .+..++|++.+.++
T Consensus 222 k~-P~nV~SASL~P~k~~fVaGg------ed~~~~kfDy~Tge-Ei~~~nkgh~gpV---------hcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 222 KM-PCNVESASLHPKKEFFVAGG------EDFKVYKFDYNTGE-EIGSYNKGHFGPV---------HCVRFSPDGELYAS 284 (334)
T ss_pred cC-ccccccccccCCCceEEecC------cceEEEEEeccCCc-eeeecccCCCCce---------EEEEECCCCceeec
Confidence 65 67899999999998888888 88888888877631 1111234554444 44557799999999
Q ss_pred EcCCCcEEEEEcC
Q 004298 180 GDKDGSICFNIFG 192 (763)
Q Consensus 180 gs~DG~I~lw~~~ 192 (763)
|+.||+|++|...
T Consensus 285 GSEDGTirlWQt~ 297 (334)
T KOG0278|consen 285 GSEDGTIRLWQTT 297 (334)
T ss_pred cCCCceEEEEEec
Confidence 9999999999743
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=125.20 Aligned_cols=167 Identities=21% Similarity=0.229 Sum_probs=109.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe----cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeE--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI----SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKL-- 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~----~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~-- 95 (763)
.|..++|-|...+|++++.|.++++|++++.++-.. -|...|.++||.| |-..|++|+.||.|.|||++....
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 499999999667899999999999999966555433 3788999999999 455889999999999999863220
Q ss_pred -------------------------EEEecccCCceeE---EEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCC
Q 004298 96 -------------------------LRSLKSHTVAVVC---LNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 96 -------------------------~~~l~~h~~~V~~---l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~ 147 (763)
++.-+.|...|.. +.+..|...+++++. .|+.+++||++........
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-----~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA-----ADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC-----CCcceEEEeeccccccccc
Confidence 0111123344544 555567777887761 4999999999874322111
Q ss_pred cccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 148 LVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 148 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
...+...+-..............+..|.+|.+...|+.|++|+....
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 11111111111112222233334455666666666999999976554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=130.14 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=141.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEE-ec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWT-IS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~-~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.+.+..|+ .+.+++++.+.+|.+|+. ++..+.. +. |.+.|.++++..-+.++++|+.|.++++||..+|++.+.+
T Consensus 210 ~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l 287 (537)
T KOG0274|consen 210 VVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL 287 (537)
T ss_pred hhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence 47778888 678889999999999999 6766666 44 8889999999887889999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|.+.|.++...+ ..+++|+ .|.++++|+.... .......+|...+ .++. -+++++++
T Consensus 288 ~gh~stv~~~~~~~--~~~~sgs------~D~tVkVW~v~n~--~~l~l~~~h~~~V-------~~v~----~~~~~lvs 346 (537)
T KOG0274|consen 288 QGHTSSVRCLTIDP--FLLVSGS------RDNTVKVWDVTNG--ACLNLLRGHTGPV-------NCVQ----LDEPLLVS 346 (537)
T ss_pred cCCCceEEEEEccC--ceEeecc------CCceEEEEeccCc--ceEEEeccccccE-------EEEE----ecCCEEEE
Confidence 99999999998764 4556677 8999999999853 2222222343333 2222 23689999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEE
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHC 259 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~ 259 (763)
|+.||+|.+|++..+..-. +++.+.+.|.++.+.+. .+++.++.|. .+..
T Consensus 347 gs~d~~v~VW~~~~~~cl~-----------------sl~gH~~~V~sl~~~~~-~~~~Sgs~D~------------~Ikv 396 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLK-----------------SLSGHTGRVYSLIVDSE-NRLLSGSLDT------------TIKV 396 (537)
T ss_pred EecCceEEEEEhhhceeee-----------------eecCCcceEEEEEecCc-ceEEeeeecc------------ceEe
Confidence 9999999999976443221 12223356777766654 6676666554 6777
Q ss_pred EEeecc
Q 004298 260 LVLDTS 265 (763)
Q Consensus 260 ~~ld~~ 265 (763)
+.+++.
T Consensus 397 Wdl~~~ 402 (537)
T KOG0274|consen 397 WDLRTK 402 (537)
T ss_pred ecCCch
Confidence 776655
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=126.27 Aligned_cols=158 Identities=19% Similarity=0.268 Sum_probs=115.3
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+.|..++|+..- +.||+|+.|.+|++|++ .|++...+. |+++|.++.|+| .+.+|.+|+.||+|.+.|.+.....
T Consensus 243 Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 243 TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred hHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc
Confidence 3457889999754 88999999999999999 788887777 899999999999 6789999999999999999843222
Q ss_pred EEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...-...+.|-.+.|.|..... .++. +||+++.+|.+..-..+.. ...|.. .+..++... ..-+
T Consensus 323 ~~~wk~~g~VEkv~w~~~se~~f~~~t------ddG~v~~~D~R~~~~~vwt-~~AHd~-------~ISgl~~n~-~~p~ 387 (463)
T KOG0270|consen 323 GKEWKFDGEVEKVAWDPHSENSFFVST------DDGTVYYFDIRNPGKPVWT-LKAHDD-------EISGLSVNI-QTPG 387 (463)
T ss_pred CceEEeccceEEEEecCCCceeEEEec------CCceEEeeecCCCCCceeE-EEeccC-------CcceEEecC-CCCc
Confidence 2222236789999999987543 3333 7999999999975322211 112221 122232222 3336
Q ss_pred EEEEEcCCCcEEEEEcCc
Q 004298 176 ILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~ 193 (763)
+|++++.|+.+++|.+..
T Consensus 388 ~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 388 LLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ceeeccccceEEEEeecC
Confidence 899999999999998654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=128.06 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE---ec-CCCcEEE-EEEcc-CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT---IS-PGKSVTS-LCWRP-DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~---~~-~~~~V~~-l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|..++..+ +-.+++++.||++++|.-.++.... +. |.+.|.+ +++-+ |+-.+.+|+.|++|.+|...++..+
T Consensus 16 DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 16 DVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred chheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch
Confidence 477777664 4478889999999999984433222 22 5566666 88887 5557999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
..+++|++.|+|++-..++. +++|| +|.++++|....-...+.+|
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgS------WD~TakvW~~~~l~~~l~gH 139 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGS------WDSTAKVWRIGELVYSLQGH 139 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecc------cccceEEecchhhhcccCCc
Confidence 99999999999999888777 88898 99999999776543444443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.7e-11 Score=122.65 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=122.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEE-EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLW-TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~-~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
..++|+++|.++|+++.||+++||+. +-+.+. ...|.++|.++.|+|||++|++-+.| ..+||++++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 67999999999999999999999995 433333 33588999999999999999999999 999999999976665542
Q ss_pred -cCCceeEEEeecCC-----CceeccCCCCCcccCCceeecCCCCC----CCCCCCcccCCcccccCCcccccceecccC
Q 004298 102 -HTVAVVCLNWEEDA-----QPSKNDFGNIPTYEDRTSRFFPPAPR----IPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 102 -h~~~V~~l~ws~~~-----~~l~s~s~~~~~~~d~~i~~wd~~~~----~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+.....+.|+.++ ...+... .-+.++.|+.... .-+.......+. .+.. ...+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~--------siSs--l~VS 290 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQF------PGGGVRLCDISLWSGSNFLRLRKKIKRFK--------SISS--LAVS 290 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecC------CCCceeEEEeeeeccccccchhhhhhccC--------ccee--EEEc
Confidence 23456777887766 2222222 2334444332211 001111111111 1222 2356
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+++++++.|+.||.|.+++.....+-.+- . +.+...|+.+.|+||-+++..++.+
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k--------------~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSLQRLQYV--K--------------EAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred CCCcEEEEeccCCcEEEEEeceeeeeEee--h--------------hhheeeeeeEEEcCCcCcccccccC
Confidence 88899999999999999874443332221 0 1222458999999999998876544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=116.35 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc--eEEEec-C-----CCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF--NWQ--RLWTIS-P-----GKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~--~v~~~~-~-----~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~ 92 (763)
-.+++|+|||..|.. +....|++|++ +|. +++... + .+.+.|++|+| +.+.+|+|+....+-|+.-..
T Consensus 161 AhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 468999999999875 45788999998 343 233222 3 35689999999 778999999999999999888
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+..+..+-+|.+.|+.+.|.++|..+.+|+ -.+..|..||++.....+..... +. ++.-+++.+...+
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGa-----Rk~dkIl~WDiR~~~~pv~~L~r-hv------~~TNQRI~FDld~ 307 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-----RKDDKILCWDIRYSRDPVYALER-HV------GDTNQRILFDLDP 307 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccc-----cCCCeEEEEeehhccchhhhhhh-hc------cCccceEEEecCC
Confidence 999999999999999999999999998887 26888999999875433332111 11 1123456677889
Q ss_pred CeeEEEEEcCCCcEEEEEcCc
Q 004298 173 RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+++|++|+.||.|++|+...
T Consensus 308 ~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 308 KGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCceeeccCCCccEEEEecCC
Confidence 999999999999999998654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-10 Score=125.56 Aligned_cols=186 Identities=12% Similarity=0.051 Sum_probs=144.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..+++++.++.|++.+.|+..|.|-+|++ .|-...++ .|+++|++++...-++.+++++.+|.++.||..++..+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 45899999999999999999999999999 44444444 48899999999998999999999999999999988888
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
++++. ...++++..+.....++.+. +|-.|+++|..+. +......||..-+ ...+++++++.
T Consensus 529 ~~l~l-~~~~~~iv~hr~s~l~a~~~------ddf~I~vvD~~t~--kvvR~f~gh~nri---------td~~FS~DgrW 590 (910)
T KOG1539|consen 529 KSLRL-GSSITGIVYHRVSDLLAIAL------DDFSIRVVDVVTR--KVVREFWGHGNRI---------TDMTFSPDGRW 590 (910)
T ss_pred eeecc-CCCcceeeeeehhhhhhhhc------CceeEEEEEchhh--hhhHHhhccccce---------eeeEeCCCCcE
Confidence 88865 57889999988877777766 7889999998752 2222233443322 23446789999
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|++++.|++|++|+.-+-.. ++ .-+.+.++..++|||+|.+|+++..|.
T Consensus 591 lisasmD~tIr~wDlpt~~l--ID----------------~~~vd~~~~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTGTL--ID----------------GLLVDSPCTSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred EEEeecCCcEEEEeccCcce--ee----------------eEecCCcceeeEECCCCCEEEEEEecC
Confidence 99999999999998443211 11 112345678999999999999998875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=126.90 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
-|..++|-|||..++.+. +..+.+|+. +|..+-+++ |.+.|.|++|+.||+.+|+|+.|..|.+|+..-. -+-++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-
Confidence 389999999998887765 456899999 676777776 8899999999999999999999999999996522 22233
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.|.+.|.||.|+|-...+++++ -...-+|....+.-.- + ..+.....+++..++.+++.|
T Consensus 91 SH~D~IQCMsFNP~~h~LasCs-------LsdFglWS~~qK~V~K------~-------kss~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCS-------LSDFGLWSPEQKSVSK------H-------KSSSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcc-------hhhccccChhhhhHHh------h-------hhheeEEEeeecCCCcEEEEe
Confidence 6899999999999999999987 2334466655431110 0 011122345567888999999
Q ss_pred cCCCcEEEEEcCceeeeeee
Q 004298 181 DKDGSICFNIFGIFPIGKIN 200 (763)
Q Consensus 181 s~DG~I~lw~~~~~~ig~~~ 200 (763)
..||+|.+-.-..-+-+.++
T Consensus 151 ~~nGTIsiRNk~gEek~~I~ 170 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEKVKIE 170 (1081)
T ss_pred ccCceEEeecCCCCcceEEe
Confidence 99999998854333334443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=117.23 Aligned_cols=198 Identities=19% Similarity=0.249 Sum_probs=128.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~l 99 (763)
.++.+++|+|.| .+|.|+..|...|.+...+.+.++. .+.++++++|+|||.+||+|+.|+.|+||.+.. |......
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 348888888888 8888888888888888666665554 467899999999999999999999999999864 4443332
Q ss_pred c-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-------CCcccc-cCCcccccceeccc
Q 004298 100 K-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-------GDTGFT-DDSEDSFRELANSS 170 (763)
Q Consensus 100 ~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-------~~~~~~-~~~~~~~~~~~~~~ 170 (763)
. .|.++|+++.|++|++++.+-+ .|-.+.+|.... ......... ...+|- .+.....+-...+.
T Consensus 487 ~k~~gs~ithLDwS~Ds~~~~~~S------~d~eiLyW~~~~-~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~r 559 (626)
T KOG2106|consen 487 GKCSGSPITHLDWSSDSQFLVSNS------GDYEILYWKPSE-CKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVAR 559 (626)
T ss_pred eeecCceeEEeeecCCCceEEecc------CceEEEEEcccc-CcccceecceeeeeeEEEEEEEEecccCCchHHHhhh
Confidence 2 2348999999999999999887 788899993321 111111000 000110 00011111111223
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+...+++++|+..|+|+++-|. +.+.... .+ .+..+.+-|.+++|+.+-++++....
T Consensus 560 s~~~~~lA~gdd~g~v~lf~yP---c~s~rA~---~h--------e~~ghs~~vt~V~Fl~~d~~li~tg~ 616 (626)
T KOG2106|consen 560 SHCEKLLASGDDFGKVHLFSYP---CSSPRAP---SH--------EYGGHSSHVTNVAFLCKDSHLISTGK 616 (626)
T ss_pred hhhhhhhhccccCceEEEEccc---cCCCccc---ce--------eeccccceeEEEEEeeCCceEEecCC
Confidence 4566899999999999999743 3222100 00 01112234788999988777776653
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=124.52 Aligned_cols=202 Identities=22% Similarity=0.246 Sum_probs=143.5
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 27 AEWNP-EKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 27 l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
+++-+ ++-.+.+|+.|+.|.+|.. ...++..++ |...|.|+....++. +++|+.|.++++|-. +++...+.+|+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~ 140 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHT 140 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcc
Confidence 55554 3445888999999999999 666777776 888999999888888 999999999999974 67777799999
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKD 183 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~D 183 (763)
..|+++..-|.+ .++||+ .|++|++|.-...+.. +++|+..+ +.+..- +. .-+++++.|
T Consensus 141 asVWAv~~l~e~-~~vTgs------aDKtIklWk~~~~l~t----f~gHtD~V-------RgL~vl--~~-~~flScsND 199 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGS------ADKTIKLWKGGTLLKT----FSGHTDCV-------RGLAVL--DD-SHFLSCSND 199 (745)
T ss_pred hheeeeeecCCC-cEEecc------CcceeeeccCCchhhh----hccchhhe-------eeeEEe--cC-CCeEeecCC
Confidence 999999998888 667777 7999999987544433 44555444 111111 22 248899999
Q ss_pred CcEEEEEcCceeeeeeeec----------ccccccccCCCCCceeeecc------------ceeeEEecCCCCEEEEEee
Q 004298 184 GSICFNIFGIFPIGKINIH----------KFHVAIPNADEQGTCRLLNA------------SIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 184 G~I~lw~~~~~~ig~~~i~----------~~~~~~~s~~~~~~~~l~~~------------~I~~v~~SpDg~~Llv~~~ 241 (763)
|.|++|+.+.-.+-...-| .....+.+.+.|+++|+|.. +|.++++=++|. ++++++
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred ceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEecc
Confidence 9999998643222211111 11223457889999999972 566665555544 667777
Q ss_pred cCccccccCCCCCCcEEEEEeecc
Q 004298 242 GQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 242 d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
|+ .++++..+-.
T Consensus 279 DG------------~VrVfT~~k~ 290 (745)
T KOG0301|consen 279 DG------------RVRVFTVDKD 290 (745)
T ss_pred Cc------------eEEEEEeccc
Confidence 76 6777766643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-11 Score=132.79 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=140.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...|.++..-..+..+++|+.|..+-+|... -..+..+ -|...|.++.|+++..+|+.|..+|+|++||++.++.+++
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt 107 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT 107 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh
Confidence 3447777776677899999999999888872 2233333 3788999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...+..+.|+|.+.+.++|+ .|..+++||.+.+... ....++...+ + ...+.|++.+++
T Consensus 108 Ltgh~~~~~sv~f~P~~~~~a~gS------tdtd~~iwD~Rk~Gc~--~~~~s~~~vv-------~--~l~lsP~Gr~v~ 170 (825)
T KOG0267|consen 108 LTGHLLNITSVDFHPYGEFFASGS------TDTDLKIWDIRKKGCS--HTYKSHTRVV-------D--VLRLSPDGRWVA 170 (825)
T ss_pred hhccccCcceeeeccceEEecccc------ccccceehhhhccCce--eeecCCccee-------E--EEeecCCCceee
Confidence 999999999999999999999998 8999999999854221 1122233322 1 123568889999
Q ss_pred EEcCCCcEEEEEcC------ceeeeeeee-----cccccccccCCCCCceeeeccc
Q 004298 179 SGDKDGSICFNIFG------IFPIGKINI-----HKFHVAIPNADEQGTCRLLNAS 223 (763)
Q Consensus 179 sgs~DG~I~lw~~~------~~~ig~~~i-----~~~~~~~~s~~~~~~~~l~~~~ 223 (763)
+|++|.++++|+.. .|+-+...+ |....-..+++.++++++|+..
T Consensus 171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999752 123222222 2222223578889999999865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=119.22 Aligned_cols=152 Identities=19% Similarity=0.194 Sum_probs=115.1
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+.|.|++-+|+|.+++.|...|.+++|.+.+|+.+..+..|-..|+|+.|+.||.++++|+ .||.+.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs------kDg~V~vW~l~~ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS------KDGAVLVWLLTD 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC------CCccEEEEEEEe
Confidence 35699999999999999999999999999999999999999999999999999999999999 999999996543
Q ss_pred CCCCC------C-CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCC
Q 004298 141 RIPQM------P-GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADE 213 (763)
Q Consensus 141 ~~~~l------~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~ 213 (763)
-.... | ...+.|+ -++..+...+.+....+++++.|.++++|+...- ..-..
T Consensus 155 lv~a~~~~~~~p~~~f~~Ht-------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlt----------- 213 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHT-------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLT----------- 213 (476)
T ss_pred ecccccCCCccceeeeccCc-------ceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEE-----------
Confidence 11111 1 1122332 2333444445555578999999999999985432 21000
Q ss_pred CCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 214 QGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 214 ~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
-..+.++.+++++|-.+.++++++++
T Consensus 214 ----i~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 214 ----ITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred ----EecCCcceeEEEcccccEEEecCCcc
Confidence 01234678899999999999988876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-10 Score=111.92 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCC--EEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
++|.+++|+.+|.++++|+.|+++++|++ .+|...--.|...|.++.|-+... .|++|+.|++++.||.+....+.+
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 44999999999999999999999999999 554444445999999999998665 899999999999999998777766
Q ss_pred ecccCC------------------------------------------ceeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 99 LKSHTV------------------------------------------AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 99 l~~h~~------------------------------------------~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
+.. .. .+.|++..++....+-|+ -.|.+-+.
T Consensus 153 ~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs------iEGrv~iq 225 (347)
T KOG0647|consen 153 LQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS------IEGRVAIQ 225 (347)
T ss_pred eec-cceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee------ecceEEEE
Confidence 542 12 244455444444444444 34544444
Q ss_pred CCCCCCCCCCCcccCCccc--ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 137 PPAPRIPQMPGLVSGDTGF--TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 137 d~~~~~~~l~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+....++-.-.+..|... ..+.-..++. .++++....|++++.||+..+|+-+.
T Consensus 226 ~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs--i~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 226 YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS--IAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred ecCCCCccCceeEEEeccCCCCCCceEEecc--eEeecccceEEEecCCceEEEecchh
Confidence 3333211111111112110 1000112223 34567778999999999999998554
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=107.53 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-----CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc----
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-----PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE---- 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-----~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve---- 91 (763)
|+++.|++.|+.+|+|+.|++|+||+. ...--|... |++.|..+.|.+ -|+.+|+++.|+++.||.-.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 999999999999999999999999996 445555553 788999999977 79999999999999999742
Q ss_pred C--C-e--EEEEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCC
Q 004298 92 N--G-K--LLRSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ~--g-~--~~~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. | + ...++....+.|+.+.|.|.. -.+++++ .||.+|+|+...
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~------aDG~lRIYEA~d 145 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS------ADGILRIYEAPD 145 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEec------cCcEEEEEecCC
Confidence 1 1 1 123344556899999999964 4667777 899999997764
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=122.86 Aligned_cols=214 Identities=18% Similarity=0.162 Sum_probs=139.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccC----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVEN---- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~---- 92 (763)
+=|.+++|+.+|.+||+|++|-.+.||+. ..+.+..+. |...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~ 130 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEG 130 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccc
Confidence 44999999999999999999999999998 566666666 567899999999 556889999999999999874
Q ss_pred ------CeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCc--ccc
Q 004298 93 ------GKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSE--DSF 163 (763)
Q Consensus 93 ------g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~--~~~ 163 (763)
.+..+.+..|...|..|+-.|++ ..+-+++ +||+++-+|++.+....+... .+.....-.. -..
T Consensus 131 ~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas------EDGtirQyDiREph~c~p~~~-~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 131 GMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS------EDGTIRQYDIREPHVCNPDED-CPSILVNYNPQLIEL 203 (758)
T ss_pred ccccCccchhhhhhhhhhhhhheecCCCCCceEEEec------CCcceeeecccCCccCCcccc-ccHHHHHhchhhhee
Confidence 23345566788999999999998 4666777 999999999986422111110 0000000000 111
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCce-e-eeeeeecccccc----------cc-cCCCCCceeeeccceeeEEec
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIF-P-IGKINIHKFHVA----------IP-NADEQGTCRLLNASIYKVALS 230 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~-ig~~~i~~~~~~----------~~-s~~~~~~~~l~~~~I~~v~~S 230 (763)
+++...+ .+-.+|++|+.|-..++|+.+.. + ...--.+..+.+ .. .....+........++-++|+
T Consensus 204 k~ltisp-~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 204 KCLTISP-SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeecC-CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 2222222 34579999999999999983321 1 000000000000 00 011223233333346778999
Q ss_pred CCCCEEEEEeecC
Q 004298 231 KDLFHLTVLCSGQ 243 (763)
Q Consensus 231 pDg~~Llv~~~d~ 243 (763)
|+|.-|++.-.+.
T Consensus 283 pNGtElLvs~~gE 295 (758)
T KOG1310|consen 283 PNGTELLVSWGGE 295 (758)
T ss_pred CCCcEEEEeeCCe
Confidence 9999999876544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-10 Score=116.66 Aligned_cols=225 Identities=12% Similarity=0.077 Sum_probs=153.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE---EEec-CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEcc
Q 004298 17 DKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL---WTIS-PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVE 91 (763)
Q Consensus 17 ~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~-~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve 91 (763)
..|.-++|+++.|+|...++.+++.|+.+++|.++|+.- -.+. .+-+|.+.+|.|+|+ .+++++.-...+.||++
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 344447799999999999999999999999999988743 3333 456899999999999 89999999999999999
Q ss_pred CCeEEEE--ecccC-CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec
Q 004298 92 NGKLLRS--LKSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 92 ~g~~~~~--l~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~ 168 (763)
+++.... ..++. ..+.....++++++++..+ ..|.|.++...++. +..... .+..+..+.+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G------~~G~I~lLhakT~e--li~s~K--------ieG~v~~~~f 352 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG------NNGHIHLLHAKTKE--LITSFK--------IEGVVSDFTF 352 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcc------cCceEEeehhhhhh--hhheee--------eccEEeeEEE
Confidence 8876432 33433 3567788899999999887 78888888766531 111000 0112223333
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccc
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEE 248 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~ 248 (763)
. .++..|++.+.+|.|.+|+.+...+-..-. .++.+ .-+++|.|++|.++++++..++
T Consensus 353 s--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~-----------D~G~v-----~gts~~~S~ng~ylA~GS~~Gi---- 410 (514)
T KOG2055|consen 353 S--SDSKELLASGGTGEVYVWNLRQNSCLHRFV-----------DDGSV-----HGTSLCISLNGSYLATGSDSGI---- 410 (514)
T ss_pred e--cCCcEEEEEcCCceEEEEecCCcceEEEEe-----------ecCcc-----ceeeeeecCCCceEEeccCcce----
Confidence 3 455777777889999999877653222111 11111 1246788999998888776553
Q ss_pred cCCCCCCcEEEEEeeccccccCchHHHHHHHHHhhHHHH
Q 004298 249 LGGHGMHGLHCLVLDTSIFSKRKDELYQVALQASNIEDL 287 (763)
Q Consensus 249 ~~~~~~~~l~~~~ld~~~l~~~~~~l~~la~~~s~i~~l 287 (763)
+-++..+.-+-+..++.+..+....+.|.+|
T Consensus 411 --------VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 411 --------VNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred --------EEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 3344455555566666676666666666555
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=119.46 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=131.9
Q ss_pred CCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEccCc-----eEEE-ecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEE
Q 004298 18 KPVASQIKIAEWNPEK--DLLAMATEDSKILLHRFNWQ-----RLWT-ISPGKSVTSLCWRP-DGKAIAVGLEDGTITLH 88 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l~~~-----~v~~-~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lw 88 (763)
+..+.+|++++|+|.. +++|+|...|+|-+|++.+| .++- ..|+.+|.+|.|+| +-..+.+.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 4555779999999987 47888889999999999422 3333 34888999999999 66789999999999999
Q ss_pred EccCCeE--EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 89 DVENGKL--LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 89 dve~g~~--~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
|++++.. +.+.......+..+.++.....+..+. .-|...+||.+......... .-+ ...+..+
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~------~~G~f~~iD~R~~~s~~~~~-~lh-------~kKI~sv 328 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD------NVGNFNVIDLRTDGSEYENL-RLH-------KKKITSV 328 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEee------cccceEEEEeecCCccchhh-hhh-------hccccee
Confidence 9997543 233322345677788877777666665 45578889888643321110 000 1122223
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+ .+-.+|++++.|++.+||+.+...--.-+ ++.+ -+..+|.++.|||+|..|+..|.|.
T Consensus 329 ~~NP-~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~--------------~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 329 ALNP-VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL--------------PHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred ecCC-CCchheeecccCcceeeeehhhhcCCCCcceecc--------------cccceeeeeEEcCCCCceEeeccCC
Confidence 3222 22358999999999999997653211100 0000 0124688999999998888888765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=123.07 Aligned_cols=91 Identities=24% Similarity=0.433 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|..++|+|||.+||+++.||.++||+...+.+..+- --+...|++||||||+|++|+.|-.|.||.++.++++..-.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 4889999999999999999999999998777665543 22568999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeec
Q 004298 101 SHTVAVVCLNWEE 113 (763)
Q Consensus 101 ~h~~~V~~l~ws~ 113 (763)
+|.++|+.++|.|
T Consensus 372 GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKSWVSVVAFDP 384 (636)
T ss_pred ccccceeeEeecc
Confidence 9999999999997
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=113.64 Aligned_cols=155 Identities=21% Similarity=0.319 Sum_probs=115.5
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCeEEEEEccCceEEEec-----CCCcEEEEEEccC---C-----------CEEEEEE
Q 004298 22 SQIKIAEWNPEK--DLLAMATEDSKILLHRFNWQRLWTIS-----PGKSVTSLCWRPD---G-----------KAIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l~~~~v~~~~-----~~~~V~~l~wspD---G-----------~~Lasg~ 80 (763)
+.|++++|-|.+ -+||+++.||.|.|.+.+..-.|... |.-.|++++|.|- | +.|++|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 459999999965 78999999999999998555444432 6677999999995 6 7799999
Q ss_pred cCCcEEEEEccCCe--EEEEecccCCceeEEEeecCC----CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcc
Q 004298 81 EDGTITLHDVENGK--LLRSLKSHTVAVVCLNWEEDA----QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTG 154 (763)
Q Consensus 81 ~Dg~V~lwdve~g~--~~~~l~~h~~~V~~l~ws~~~----~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~ 154 (763)
.|+.|+||+..++. .-+++.+|.+.|..++|.|.. ..+++++ .||++.+|.......+-....- ..
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S------qDg~viIwt~~~e~e~wk~tll--~~ 254 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS------QDGTVIIWTKDEEYEPWKKTLL--EE 254 (299)
T ss_pred CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec------CCCcEEEEEecCccCccccccc--cc
Confidence 99999999988764 335588999999999999975 4688898 9999999976632211111000 00
Q ss_pred cccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 155 FTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
|. ..+..+ +++..+++|++++.|++|.+|.
T Consensus 255 f~----~~~w~v--SWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 255 FP----DVVWRV--SWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CC----cceEEE--EEeccccEEEEecCCcEEEEEE
Confidence 11 112223 3456788999999999999995
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=109.53 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce-EEEec------CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR-LWTIS------PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~-v~~~~------~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve 91 (763)
++|.|+.|+|+++.+|+.. |..|.+|++ ++.. +..+. +....++-+|+| ||..+++. .|+++..||++
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEcc
Confidence 4799999999999998766 888999999 4444 33332 234678899999 88888876 58999999999
Q ss_pred CCeEEEEec-ccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 92 NGKLLRSLK-SHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 92 ~g~~~~~l~-~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+.+....+. .|...|..+.|+|+-+ ++++|+ +|+.+++||.+....++.. ..+|.-++ ..+.+.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g------DdgyvriWD~R~tk~pv~e-l~~HsHWv-------W~VRfn 267 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG------DDGYVRIWDTRKTKFPVQE-LPGHSHWV-------WAVRFN 267 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcC------CCccEEEEeccCCCccccc-cCCCceEE-------EEEEec
Confidence 877766664 6778899999999986 567887 8999999999875333221 22333322 001111
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeee-eeec----ccccccc----cCCCCCcee---eeccceeeEEecCCCCEEE
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGK-INIH----KFHVAIP----NADEQGTCR---LLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-~~i~----~~~~~~~----s~~~~~~~~---l~~~~I~~v~~SpDg~~Ll 237 (763)
+ ....++++|+.|..|.+|...+..-.. +... ..+.... -.-.++.+. -+..+|++++||.-.-.++
T Consensus 268 ~-~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 268 P-EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred C-ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 1 122578999999999999755432111 1000 0000000 000122222 2336899999998767776
Q ss_pred EEee
Q 004298 238 VLCS 241 (763)
Q Consensus 238 v~~~ 241 (763)
+..+
T Consensus 347 ASLS 350 (370)
T KOG1007|consen 347 ASLS 350 (370)
T ss_pred EEec
Confidence 6543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=124.39 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=133.8
Q ss_pred CCCCCeEEEEEcCCCCEEEE--EeCCCeEEEEEcc--Cc----eEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAM--ATEDSKILLHRFN--WQ----RLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~--~s~Dg~V~v~~l~--~~----~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwd 89 (763)
.+|+.... ||.+...+|+ ++..|.|-||.++ |. .+-.+.+|..|+.+.|.| |.+.||+|++||.|+||.
T Consensus 579 ~~PgEsnG--fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 579 RLPGESNG--FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred cCCCccCc--eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 34444443 4555566664 5667999999983 22 334455788999999999 999999999999999999
Q ss_pred ccCCe-------EEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 90 VENGK-------LLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 90 ve~g~-------~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
+..+. .-..++.|...|+++.|+|-- ..+++++ .|-+|++||+... .......+|+.-+
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------yd~Ti~lWDl~~~--~~~~~l~gHtdqI----- 723 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------YDSTIELWDLANA--KLYSRLVGHTDQI----- 723 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------ccceeeeeehhhh--hhhheeccCcCce-----
Confidence 87543 345678899999999999954 4667776 7999999999863 2223344555444
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+..++++++..+++.+.||+|++|.-.+- ..++....++..+. --.+.|..||+++++.+-
T Consensus 724 ----f~~AWSpdGr~~AtVcKDg~~rVy~Prs~---e~pv~Eg~gpvgtR------------gARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 724 ----FGIAWSPDGRRIATVCKDGTLRVYEPRSR---EQPVYEGKGPVGTR------------GARILWACDGRIVIVVGF 784 (1012)
T ss_pred ----eEEEECCCCcceeeeecCceEEEeCCCCC---CCccccCCCCccCc------------ceeEEEEecCcEEEEecc
Confidence 45567789999999999999999964332 22222222221111 125678889999988876
Q ss_pred cC
Q 004298 242 GQ 243 (763)
Q Consensus 242 d~ 243 (763)
++
T Consensus 785 dk 786 (1012)
T KOG1445|consen 785 DK 786 (1012)
T ss_pred cc
Confidence 65
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=118.94 Aligned_cols=211 Identities=15% Similarity=0.111 Sum_probs=136.8
Q ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEEccCce-------EE-EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 25 KIAEWNP---EKDLLAMATEDSKILLHRFNWQR-------LW-TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 25 ~~l~~sP---~~~lLA~~s~Dg~V~v~~l~~~~-------v~-~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.+..|++ ...+||.+.+||.|.+++...+. +. -+.|...|..+.|-|....|++++.|.+++.||++.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3456655 23789999999999999973321 11 2237888999999995558899999999999999999
Q ss_pred eEEEE--ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCC-----cccCCcc---cc------
Q 004298 94 KLLRS--LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-----LVSGDTG---FT------ 156 (763)
Q Consensus 94 ~~~~~--l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-----~~s~~~~---~~------ 156 (763)
+++.. +.+|...|.+++|.|.+. .+++|+ .|+.+.+||.+........ ....+.. ..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg------RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG------RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeecc------CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 98876 889999999999999876 567777 8999999998753200000 0000000 00
Q ss_pred -----cCCcccccceecccCCCeeEEEEEcC-CCcEEEEEcCcee----eeeeeecccccccccCCCCCceeeeccceee
Q 004298 157 -----DDSEDSFRELANSSHQRFSILCSGDK-DGSICFNIFGIFP----IGKINIHKFHVAIPNADEQGTCRLLNASIYK 226 (763)
Q Consensus 157 -----~~~~~~~~~~~~~~~~~~~~L~sgs~-DG~I~lw~~~~~~----ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~ 226 (763)
.........+......+.+.||+++. ||.|++||+.... -+.......+.+ .... ..+.+
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-----skrs-----~G~~n 276 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-----SKRS-----VGQVN 276 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc-----ccce-----eeeEE
Confidence 00000011111223345567888887 9999999876532 111211111111 1111 13556
Q ss_pred EEecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 227 VALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 227 v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
+.....|.+|++.|.|+ .||++.+-
T Consensus 277 L~lDssGt~L~AsCtD~------------sIy~ynm~ 301 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDN------------SIYFYNMR 301 (720)
T ss_pred EEecCCCCeEEEEecCC------------cEEEEecc
Confidence 77778889999999987 77777654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=118.63 Aligned_cols=206 Identities=16% Similarity=0.118 Sum_probs=136.9
Q ss_pred CeEEEEEcCCCCE-EEEEeCCCeEEEEEccCc----eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPEKDL-LAMATEDSKILLHRFNWQ----RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~----~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
++..+.|+....+ +|+.+.|..|.+|+-+|+ ++.....++.-.|++......++++|+..|.|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 3999999987653 334567788999999877 12222234433444444444899999999999999999666777
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.++.|++.|+++.++....++++++ ..|.|.+....++....+ |..+....+.-+......+ .+|
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs------~gGdiiih~~~t~~~tt~--------f~~~sgqsvRll~ys~skr-~lL 180 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVS------DGGDIIIHGTKTKQKTTT--------FTIDSGQSVRLLRYSPSKR-FLL 180 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEec------cCCcEEEEecccCccccc--------eecCCCCeEEEeecccccc-eee
Confidence 7899999999999999999999998 778888887765432211 1111122222233333333 578
Q ss_pred EEEcCCCcEEEEEcCc-eeeeee-eecccccc-----------cccCCCCCceeeec-------------cceeeEEecC
Q 004298 178 CSGDKDGSICFNIFGI-FPIGKI-NIHKFHVA-----------IPNADEQGTCRLLN-------------ASIYKVALSK 231 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~-~~ig~~-~i~~~~~~-----------~~s~~~~~~~~l~~-------------~~I~~v~~Sp 231 (763)
.+++.+|.|++|+... .++..+ ..|..|.. +.+.|.|+.+-+++ .+...++|++
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE 260 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC
Confidence 8999999999998543 232221 12222111 12444555555544 5788999999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
+|.+|+++...+
T Consensus 261 ~G~~L~aG~s~G 272 (673)
T KOG4378|consen 261 CGTYLCAGNSKG 272 (673)
T ss_pred CceEEEeecCCc
Confidence 999999887755
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=128.24 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=127.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+|+.++..-.++++++++.+|.+.+|+++.. .+.++.-+.+++++..+.....+|.+.+|-.|+++|+.+.+.++.+.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 45999999999999999999999999999544 45566678889999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
+|.+.|+.++|+|||+++++++ .|++||+||+.+. .+. .++ .....+....++|++++|++.
T Consensus 574 gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~--~lI------D~~----~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTG--TLI------DGL----LVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred ccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCc--cee------eeE----ecCCcceeeEECCCCCEEEEE
Confidence 9999999999999999999998 8999999998762 111 011 011122445577999999999
Q ss_pred cCC-CcEEEEEcC
Q 004298 181 DKD-GSICFNIFG 192 (763)
Q Consensus 181 s~D-G~I~lw~~~ 192 (763)
..| .-|++|...
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 988 679999643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=121.39 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc---CCCEEEEEEcCCcEEEEEcc-CCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP---DGKAIAVGLEDGTITLHDVE-NGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp---DG~~Lasg~~Dg~V~lwdve-~g~~ 95 (763)
.++.+++.||+|+.||+|..-|+++||++ +-.....+. |..+|.|+.++. ..++||+|+.|..|+++|+. +-.+
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 45999999999999999999999999999 433333443 889999999986 35799999999999999986 4456
Q ss_pred EEEecccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCC---CCCC--cccCCcccccCCcccccceec
Q 004298 96 LRSLKSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIP---QMPG--LVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~---~l~~--~~s~~~~~~~~~~~~~~~~~~ 168 (763)
+.++.+|.+.|+++.|..+| ...++++ .|+.+.|- ...+.. ..+. +..+++.. ...
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscG------ADksimFr-~~qk~~~g~~f~r~t~t~~ktTl----------YDm 602 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCG------ADKSIMFR-VNQKASSGRLFPRHTQTLSKTTL----------YDM 602 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEecc------Cchhhhee-hhccccCceeccccccccccceE----------EEe
Confidence 78899999999999999887 4556666 46555432 221110 0000 11111111 122
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecc-------------cccccccCCCCCceeeec-------------
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHK-------------FHVAIPNADEQGTCRLLN------------- 221 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~-------------~~~~~~s~~~~~~~~l~~------------- 221 (763)
..++..++++++..|.+|++|+...-+ ...++-.. -.....++..++++.+++
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 345666788888888888888654321 11111000 000112333445555444
Q ss_pred -cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
-.|+.+.|++|-++|+.++.|+ -|.+|.+-.
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDg------------CIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDG------------CIFVWKLPL 714 (1080)
T ss_pred chheeeeeecccchhheeecCCc------------eEEEEECch
Confidence 2477888999988888887766 677776654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-08 Score=107.51 Aligned_cols=211 Identities=16% Similarity=0.170 Sum_probs=136.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe------cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI------SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~------~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|....|+|...-+.+....+.+..|.+.+.-+.+- ...+.|.|++|.++|. .++|.++|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 467889999987666667789999999865543332 1346799999999996 578999999999999888888
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-C--CCCCCccc-------CCcccc--c-------
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-I--PQMPGLVS-------GDTGFT--D------- 157 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~--~~l~~~~s-------~~~~~~--~------- 157 (763)
+....|++.|.++....+|.++. |+ .|+.+..||-.-+ . .++|.... +...+. +
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllS-Gg------KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLS-GG------KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred eEeeecCCceEEEEEecCccEee-cC------ccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 87779999999999999998776 77 8999999983211 1 11111110 000000 0
Q ss_pred -CCccccc---------ceecccCCCeeEEEEEcCCCcEEEEEcCceee---------eeeeecccccccccCCCCC---
Q 004298 158 -DSEDSFR---------ELANSSHQRFSILCSGDKDGSICFNIFGIFPI---------GKINIHKFHVAIPNADEQG--- 215 (763)
Q Consensus 158 -~~~~~~~---------~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i---------g~~~i~~~~~~~~s~~~~~--- 215 (763)
..+..+. -.....++..+.+++++.|+.+++|. +-... .....+... ...-+...+
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEE
Confidence 0000111 01123356667899999999999996 22111 111111110 111111111
Q ss_pred ----------ceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 216 ----------TCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 216 ----------~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.-+.++..+.|||||..+++++.|.
T Consensus 432 V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred EEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence 1122246889999999999999998877
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-09 Score=109.20 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=114.9
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEecccCCceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ 110 (763)
++++++++.|+.|.+|++ +++.+..+..+..+.+++|+|||+.+ ++++.++.|++||..+++.++.+..+. .+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 367889999999999999 56666777655667889999999976 566789999999999999888776543 357889
Q ss_pred eecCCCceec-cCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCc-EEE
Q 004298 111 WEEDAQPSKN-DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGS-ICF 188 (763)
Q Consensus 111 ws~~~~~l~s-~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~-I~l 188 (763)
|+|+++.++. ++ .++.+++||...... + ...... ... ....++++++++++++.++. +++
T Consensus 80 ~~~~g~~l~~~~~------~~~~l~~~d~~~~~~-~-~~~~~~--------~~~--~~~~~~~dg~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 80 LHPNGKILYIANE------DDNLVTVIDIETRKV-L-AEIPVG--------VEP--EGMAVSPDGKIVVNTSETTNMAHF 141 (300)
T ss_pred ECCCCCEEEEEcC------CCCeEEEEECCCCeE-E-eEeeCC--------CCc--ceEEECCCCCEEEEEecCCCeEEE
Confidence 9999986644 43 588999999875210 0 000000 001 11234577788888887654 555
Q ss_pred EEcCceeee-eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 189 NIFGIFPIG-KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 189 w~~~~~~ig-~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
|+......- .... ......++|+|||+.+++.+.
T Consensus 142 ~d~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 142 IDTKTYEIVDNVLV-------------------DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EeCCCCeEEEEEEc-------------------CCCccEEEECCCCCEEEEEcC
Confidence 554332211 1100 012346889999998877653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-09 Score=105.47 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEEc--cCceEEEec--CCCcEEEEEEccCCCEEEEEE--cCCcEEEEE
Q 004298 26 IAEWNPEKDLLAMATE----------DSKILLHRF--NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGL--EDGTITLHD 89 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~----------Dg~V~v~~l--~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwd 89 (763)
.+.|+|+|+.|++-.. -+...+|.+ ++..+-.+. ..+.|.+++|+|+|+.||+.. .++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5899999988776443 134556666 444444443 445799999999999887654 578999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
++ ++.+..+. ...+..+.|+|+|++++.++.. ...|.+.+||..... .+... .+. ......
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~-~i~~~--~~~----------~~t~~~ 150 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKK-KISTF--EHS----------DATDVE 150 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCE-Eeecc--ccC----------cEEEEE
Confidence 97 77777774 4678899999999999887621 135779999998421 11100 010 112345
Q ss_pred cCCCeeEEEEEcC------CCcEEEEEcCceeeeee
Q 004298 170 SHQRFSILCSGDK------DGSICFNIFGIFPIGKI 199 (763)
Q Consensus 170 ~~~~~~~L~sgs~------DG~I~lw~~~~~~ig~~ 199 (763)
++|+++++++++. |+.++||.+....+.+.
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 6788888888874 67788887655444443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=112.49 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=134.3
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEcc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVE 91 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve 91 (763)
+-|...+.|+++.++.+..+||+++..|.|.|+.+ ++++--.+. .|..|.-+.|+|..+ .|.+++.+|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 33444567999999999999999999999999999 666655554 567888999999777 45678899999999998
Q ss_pred CCeEEEE-ecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 92 NGKLLRS-LKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 92 ~g~~~~~-l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
....++. ...|..+...|+|+|.+. ++++-+ .|+.|.+||...+...-. ......+ -..+
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG------~Dkki~~yD~~s~~s~~~--l~y~~Pl----------stva 257 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVG------YDKKINIYDIRSQASTDR--LTYSHPL----------STVA 257 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEec------ccceEEEeecccccccce--eeecCCc----------ceee
Confidence 6665554 567999999999999775 566666 799999999986422110 0001111 1234
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCC
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD 232 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpD 232 (763)
+.+++-+|+.|+..|.|..|+.++.+-- -..+..++.+|.+++|-+.
T Consensus 258 f~~~G~~L~aG~s~G~~i~YD~R~~k~P----------------v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKGELIAYDMRSTKAP----------------VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ecCCceEEEeecCCceEEEEecccCCCC----------------ceEeeecccceeEEEeeec
Confidence 6789999999999999999997764211 1122334467888988664
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=109.83 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=115.8
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|-.++|+|.- +.|++++.|.+|.+|+. +|.-+.++.|...|.++.|+-||.+|++++.|..|+|||.++|+.+..-.
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence 38999999976 78899999999999999 88889999999999999999999999999999999999999999998887
Q ss_pred ccCC-ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC-eeEEE
Q 004298 101 SHTV-AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR-FSILC 178 (763)
Q Consensus 101 ~h~~-~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~L~ 178 (763)
+|.+ .-...-|-.++..+.+| .....++.+-+||...--.++ ....-+++ ...+..-++++ .-+.+
T Consensus 213 ~heG~k~~Raifl~~g~i~tTG---fsr~seRq~aLwdp~nl~eP~-~~~elDtS--------nGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTG---FSRMSERQIALWDPNNLEEPI-ALQELDTS--------NGVLLPFYDPDTSIVYL 280 (472)
T ss_pred cccCCCcceeEEeccCceeeec---cccccccceeccCcccccCcc-eeEEeccC--------CceEEeeecCCCCEEEE
Confidence 8865 45566788888854444 233468899999876421111 00000000 00111112233 33556
Q ss_pred EEcCCCcEEEEEcC
Q 004298 179 SGDKDGSICFNIFG 192 (763)
Q Consensus 179 sgs~DG~I~lw~~~ 192 (763)
+|-.||.|+.|.+.
T Consensus 281 ~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 281 CGKGDSSIRYFEIT 294 (472)
T ss_pred EecCCcceEEEEec
Confidence 67789999988643
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-09 Score=104.39 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCC-----CEEEEEeCCCeEEEEEccC--ceEEE---e------cCCCcEEEEEEcc-CCCEEEEEEcCCc
Q 004298 22 SQIKIAEWNPEK-----DLLAMATEDSKILLHRFNW--QRLWT---I------SPGKSVTSLCWRP-DGKAIAVGLEDGT 84 (763)
Q Consensus 22 ~~V~~l~~sP~~-----~lLA~~s~Dg~V~v~~l~~--~~v~~---~------~~~~~V~~l~wsp-DG~~Lasg~~Dg~ 84 (763)
.+++.+.|.|+. ++||++ +..+++|++.. .++.. + .+..++++..|+. |-++|.+++-|.+
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 449999999976 577765 45799999952 22211 1 1345799999998 8899999999999
Q ss_pred EEEEEccCCe---EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCC
Q 004298 85 ITLHDVENGK---LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 85 V~lwdve~g~---~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..|||+++|. +..++-.|...|..|+|...+. .+++.+ .||.+|+||++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg------aDGSvRmFDLR~ 228 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG------ADGSVRMFDLRS 228 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec------CCCcEEEEEecc
Confidence 9999999873 3556779999999999998664 677777 899999999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=107.61 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=138.8
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-cEEEEEEccCCCEEEEEEcCCcEEEEEcc---
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-SVTSLCWRPDGKAIAVGLEDGTITLHDVE--- 91 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-~V~~l~wspDG~~Lasg~~Dg~V~lwdve--- 91 (763)
+++.....|..+-...++.+|++++.|..|.+|++.||.+..+..+. .-+..+.||||+++|+++-...|++|.+-
T Consensus 182 f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 182 FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred cchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 33333445777888888999999999999999999999999998543 45667899999999999999999999964
Q ss_pred CCe-----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccccc
Q 004298 92 NGK-----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 92 ~g~-----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
+|. .+..+++|.+.|...+|+++...+++.| .||++|+||..-.. ..-+........+. ....-.
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS------kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl--~aag~~ 333 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS------KDGKWRIWDTDVRYEAGQDPKILKEGSAPL--HAAGSE 333 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCCCcceeEEEe------cCCcEEEeeccceEecCCCchHhhcCCcch--hhcCCC
Confidence 332 2456889999999999999999999998 99999999875321 11111000000000 001111
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+....+|++++|+.+. ...++++.... |.. .+..-+++...|.+++|++||++++.++.
T Consensus 334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~---g~~-------------~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSF-GSDLKVFASED---GKD-------------YPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred ceEEEeCCCCcEEEeec-CCceEEEEccc---Ccc-------------chhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 12334567888888755 55777775222 211 01111234456899999999999988754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=104.86 Aligned_cols=123 Identities=23% Similarity=0.312 Sum_probs=100.2
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCEEEE--EeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcE-
Q 004298 11 PFQLQFDKPVASQIKIAEWNPEKDLLAM--ATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTI- 85 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP~~~lLA~--~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V- 85 (763)
+++++...+-|.++.+++.|+.+.++|. ....|.|.||+. +-+.+-.+. |.+.+.|++|+|||++||++++.|+|
T Consensus 119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 3344433344566877888888889997 335689999998 777777776 99999999999999999999999985
Q ss_pred EEEEccCCeEEEEecccC--CceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 86 TLHDVENGKLLRSLKSHT--VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~--~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|++++.+|+.+..|+... ..|.+++|+|+++++++.| ..++|.+|.+.
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS------~TeTVHiFKL~ 248 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS------NTETVHIFKLE 248 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec------CCCeEEEEEec
Confidence 999999999999987533 4789999999999998887 78889888554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=116.92 Aligned_cols=194 Identities=16% Similarity=0.270 Sum_probs=132.5
Q ss_pred EEEEeCCCeEEEEEccC---ceEEEec-------------------C-----------------CCcEEEEEEccCCCEE
Q 004298 36 LAMATEDSKILLHRFNW---QRLWTIS-------------------P-----------------GKSVTSLCWRPDGKAI 76 (763)
Q Consensus 36 LA~~s~Dg~V~v~~l~~---~~v~~~~-------------------~-----------------~~~V~~l~wspDG~~L 76 (763)
+.+++.|++|++|++.+ ..++.-+ + .-.+.+++.+|||++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 77899999999999954 1121110 0 0138999999999999
Q ss_pred EEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecC---CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 77 AVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEED---AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~---~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
|+|..-|.+++|++.+-+....+..|++.|.|+.++-- .+++++++ .|+.|.++|....... .....+|.
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas------rdRlIHV~Dv~rny~l-~qtld~HS 547 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS------RDRLIHVYDVKRNYDL-VQTLDGHS 547 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc------CCceEEEEecccccch-hhhhcccc
Confidence 99999999999999988888889999999999999842 36788998 9999999998764221 11222222
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC------ceeeeeeee----------cccccccccCCCCCce
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG------IFPIGKINI----------HKFHVAIPNADEQGTC 217 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~------~~~ig~~~i----------~~~~~~~~s~~~~~~~ 217 (763)
. ++..+.+...+-...|++++.|..|.+-.+. .|+-++..+ ........++..|..+
T Consensus 548 s-------sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 548 S-------SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred c-------ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccce
Confidence 2 2223344444444678888888888765332 122221111 1111223355667777
Q ss_pred eeec-----------------cceeeEEecCCCCEEEEEeecC
Q 004298 218 RLLN-----------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 218 ~l~~-----------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++++ +..-.+.+.|.|.+++..|+|+
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 7765 3455688999999999999987
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=115.37 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=111.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEE--EccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLH--DVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lw--dve~g~~ 95 (763)
.+..++|||+|+.||.++.+ ..|++|++.+.....+. ......+++|+|||+.|+++. .+|.+.|| |+.+++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~- 283 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT- 283 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-
Confidence 38899999999999987654 36999999543222222 222345789999999998875 68876665 555555
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...+..+...+....|+|||+.++..+. .++...+|.......... .. +... ....++++++
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~-----~~g~~~I~~~~~~~~~~~-~l-~~~~-----------~~~~~SpDG~ 345 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSD-----RSGSPQVYRMSASGGGAS-LV-GGRG-----------YSAQISADGK 345 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEEC-----CCCCceEEEEECCCCCeE-Ee-cCCC-----------CCccCCCCCC
Confidence 4566667778889999999997765541 456777876542111100 00 0000 1123467777
Q ss_pred EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.++.++.++ +..|+... |..... +.. + ....++|||||+.+++++.++
T Consensus 346 ~ia~~~~~~-i~~~Dl~~---g~~~~l-------t~~-------~--~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 346 TLVMINGDN-VVKQDLTS---GSTEVL-------SST-------F--LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred EEEEEcCCC-EEEEECCC---CCeEEe-------cCC-------C--CCCCceECCCCCEEEEEEcCC
Confidence 787777655 44465332 111100 000 0 123568999999999887654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.3e-10 Score=128.09 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=113.7
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC-ceEEEe---cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRFNW-QRLWTI---SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~-~~v~~~---~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+.|..+.|+|.+ +++|+|++||.|.|||++. +.-+.. ...+.|.+++|+. ..+.||+|+.+|.+.|||++..+
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~ 195 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK 195 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence 4559999999977 5999999999999999943 222222 2456899999998 56689999999999999999887
Q ss_pred EEEEecccCC--ceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 LLRSLKSHTV--AVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~~~l~~h~~--~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+-.+..|.. .+..+.|+|++. .+++++++ ...-.|.+||++....++... .+| ...+-.+.|+..
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d---d~~PviqlWDlR~assP~k~~-~~H-------~~GilslsWc~~ 264 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD---DSAPVIQLWDLRFASSPLKIL-EGH-------QRGILSLSWCPQ 264 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCC---CCCceeEeecccccCCchhhh-ccc-------ccceeeeccCCC
Confidence 7766665543 477899999873 34444421 134578899988643322211 122 122334556553
Q ss_pred CCeeEEEEEcCCCcEEEEEcCc
Q 004298 172 QRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+ -.+|++++.|+.|.+|....
T Consensus 265 D-~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 265 D-PRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred C-chhhhcccCCCCeeEecCCC
Confidence 3 36899999999999998554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-09 Score=113.94 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=119.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+....|..++|++.++ |.+.+.+|.|.-|++ ++++...+. .++.|.+++.+|.++.+++||+||.+..+++..+++.
T Consensus 67 ~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence 4345699999996555 567788999999999 888888887 6789999999999999999999998899999888876
Q ss_pred EE--ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RS--LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~--l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+. +....+.|.+++|+|++..+++|+ .|+.|++||........ -...+...........+..+.+ -+-
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs------~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~---Lrd 215 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGS------IDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLF---LRD 215 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecc------cCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEE---eec
Confidence 54 444568999999999999999998 89999999987632111 0000000000000001111111 133
Q ss_pred eEEEEEcCCCcEEEEEcC
Q 004298 175 SILCSGDKDGSICFNIFG 192 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~ 192 (763)
+.+++|++.|+|.+|+..
T Consensus 216 ~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSI 233 (691)
T ss_pred CcEEEecCCceEEEEccc
Confidence 579999999999999744
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.7e-09 Score=103.80 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec----------CC----C--------------------------
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----------PG----K-------------------------- 62 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~----------~~----~-------------------------- 62 (763)
|.+++||++|++|.+++.|..|.+|++ .|..+..+. |. .
T Consensus 68 i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 68 ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC
Confidence 999999999999999999999999998 665443332 10 0
Q ss_pred -------cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeEEEeecCCCceeccCCCCCcccCCcee
Q 004298 63 -------SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 63 -------~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~ 134 (763)
...+..|.+.|++|.+|.+.|.+.+++.++-++++.++... ..|..|.++..|++++.-. .|+.||
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt------sDRvIR 221 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT------SDRVIR 221 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec------CCceEE
Confidence 01233477789999999999999999999999999887655 7899999999999887766 799999
Q ss_pred ecCCCCCCCCCCCcccCCcccc---cCCcccccceecccCCCeeEEEEEc-CCCcEEEEE
Q 004298 135 FFPPAPRIPQMPGLVSGDTGFT---DDSEDSFRELANSSHQRFSILCSGD-KDGSICFNI 190 (763)
Q Consensus 135 ~wd~~~~~~~l~~~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~ 190 (763)
.++...-...- ..+..... ...-+..+.-.++++.++.+++.|+ ....+++|.
T Consensus 222 ~ye~~di~~~~---r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 222 TYEISDIDDEG---RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred EEehhhhcccC---ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 99875311110 00000000 0000112223345677888888777 344677886
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-09 Score=116.57 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=135.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+.+++.|||.++..++..||.|.||++ |...|..+. |.+.+.||..++||..|-+|+-|++||-||+++|+.+....
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd 590 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD 590 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence 3678999999999999999999999999 555666666 77889999999999999999999999999999887665443
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..+.|.++..+|++.+++.|- +++.+.+.....+ ...+. .|.+.+ ++..+...++.+++
T Consensus 591 -F~SQIfSLg~cP~~dWlavGM------ens~vevlh~skp~kyqlh----lheScV---------LSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 591 -FSSQIFSLGYCPTGDWLAVGM------ENSNVEVLHTSKPEKYQLH----LHESCV---------LSLKFAYCGKWFVS 650 (705)
T ss_pred -hhhhheecccCCCccceeeec------ccCcEEEEecCCccceeec----ccccEE---------EEEEecccCceeee
Confidence 257899999999999999986 7777777665442 11111 122222 44456678889999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.+.|.-+..|- .+.|.-- .+ ... ..+|.++..|.|.++++.++.+
T Consensus 651 tGkDnlLnawr---tPyGasi-Fq----skE----------~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 651 TGKDNLLNAWR---TPYGASI-FQ----SKE----------SSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred cCchhhhhhcc---Cccccce-ee----ccc----------cCcceeeeeccCceEEEecCCC
Confidence 99999999885 2222210 00 000 1368888999998888776544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-09 Score=113.22 Aligned_cols=112 Identities=23% Similarity=0.273 Sum_probs=96.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc---c------CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF---N------WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~------~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.|..++|+|....|++++.||.+.+|++ . -.++|++. |.++|.|++..++|+.+.+|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 4888999999999999999999999999 1 13678876 889999999999999999999999999995531
Q ss_pred ------C----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 93 ------G----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 93 ------g----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .....+.+|.+.|+.+.+++....+.+++ .||+++.|....
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs------~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS------SDGTVRLWEPTE 427 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeec------CCceEEeeccCC
Confidence 1 23456789999999999999988899998 899999997654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-08 Score=113.23 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEE-EEcCCcEEEEEcc-CCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAV-GLEDGTITLHDVE-NGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Las-g~~Dg~V~lwdve-~g~~ 95 (763)
..+...+|+|+|+.||.++.+ ..|++|++.+.....+. ....+.+.+|+|||+.|+. .+.+|...||.+. ++..
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 348889999999999987643 35999999544333332 3345678999999998875 5678876666553 2334
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-ccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-VSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
.+.+..+...+....|+|||+.++..++ ..+...+|............ ..+. .. ....+++++
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~-----~~g~~~Iy~~~~~~g~~~~lt~~g~---------~~--~~~~~SpDG 339 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSD-----RGGAPQIYRMPASGGAAQRVTFTGS---------YN--TSPRISPDG 339 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEec-----CCCCcEEEEEECCCCceEEEecCCC---------Cc--CceEECCCC
Confidence 5666666666778899999998776541 23455555432110000000 0000 00 112345677
Q ss_pred eEEEEEcCCC---cEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 175 SILCSGDKDG---SICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 175 ~~L~sgs~DG---~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+.++..+.++ .|.+|+...-....+ +.+ ......+|||||+.+++.+.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~l----------t~~---------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTAL----------TDT---------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEc----------cCC---------CCccCceECCCCCEEEEEEecC
Confidence 7777665443 466665432111111 000 0123578999999999987644
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=108.05 Aligned_cols=115 Identities=11% Similarity=0.233 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCC--EEEEEEcCCcEEEEEccCCe----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGK---- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve~g~---- 94 (763)
+.|.+++..|.|..||+|+.||+|+||.+ +|.+++++.-++.|.|++|+|.+. .||++..+. +.|.+..-|.
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV 479 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh
Confidence 56999999999999999999999999999 899999999999999999999776 566665544 4444322120
Q ss_pred ---------------------------------EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 ---------------------------------LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ---------------------------------~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
-++..-.|...|..+.|+..|.++++...+ ...+.+.+.++..
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~---~~~~~VliHQLSK 555 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD---SGNKSVLIHQLSK 555 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC---CCcceEEEEeccc
Confidence 012222467899999999999999875421 1345566655543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.1e-08 Score=109.71 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATE---DSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg--~V~lwdve~g~~ 95 (763)
.+...+|||+|+.||..+. +..|++|++.+.....+. ....+.+.+|+|||+.|+... .+| .|++||+++++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 4889999999999987653 357889998544333332 233456789999999888763 455 588999988776
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.+ +..+...+....|+|+|+.++..+
T Consensus 280 ~~-lt~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 280 RQ-VTDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred EE-ccCCCCCcCceEECCCCCEEEEEe
Confidence 44 444456788999999999887665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-08 Score=109.48 Aligned_cols=114 Identities=10% Similarity=0.142 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCEEEEEeC---CCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEE-EcCCc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATE---DSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVG-LEDGT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg-~~Dg~--V~lwdve~g~~ 95 (763)
.+...+|+|+|+.||..+. +..|++|++.+.....+. ....+.+.+|+|||+.|+.. ..+|. |++||+++++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT 282 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce
Confidence 4899999999999998764 468999999544433333 44567789999999987654 45554 77778887765
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+..+........|+|||+.++..+.. .....+.++|...
T Consensus 283 -~~Lt~~~~~~~~~~~spDG~~i~f~s~~---~g~~~Iy~~d~~g 323 (435)
T PRK05137 283 -TRLTDSPAIDTSPSYSPDGSQIVFESDR---SGSPQLYVMNADG 323 (435)
T ss_pred -EEccCCCCccCceeEcCCCCEEEEEECC---CCCCeEEEEECCC
Confidence 4566666677889999999987765411 0123455666543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=107.90 Aligned_cols=215 Identities=20% Similarity=0.160 Sum_probs=130.0
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEc-cCce--EEEec-----CCCcEEEEEEccCCCE--EEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRF-NWQR--LWTIS-----PGKSVTSLCWRPDGKA--IAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l-~~~~--v~~~~-----~~~~V~~l~wspDG~~--Lasg~~Dg~V~lwdv 90 (763)
..|.+++|||. .+++|.|+.+|+|.+|++ .++. .+.+. |...|+.+.|-.+-.- |++++.||.|+.|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 45999999994 589999999999999999 3333 34332 6788999999875544 999999999999987
Q ss_pred cCCeE------EEE---------------------------------------------------------ecccCCcee
Q 004298 91 ENGKL------LRS---------------------------------------------------------LKSHTVAVV 107 (763)
Q Consensus 91 e~g~~------~~~---------------------------------------------------------l~~h~~~V~ 107 (763)
+.-.. ... +..|.++|.
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 63111 000 001234455
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEE
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSIC 187 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~ 187 (763)
++.++|-+..+...+ .|-++++|.......++..... ..+.+....|++ .+-.++++++.||++.
T Consensus 403 ~v~~nPF~~k~fls~------gDW~vriWs~~~~~~Pl~~~~~--------~~~~v~~vaWSp-trpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSV------GDWTVRIWSEDVIASPLLSLDS--------SPDYVTDVAWSP-TRPAVFATVDGDGNLD 467 (555)
T ss_pred eeecCCCccceeeee------ccceeEeccccCCCCcchhhhh--------ccceeeeeEEcC-cCceEEEEEcCCCcee
Confidence 555555443222222 3777888866532222221111 011122344544 3346899999999999
Q ss_pred EEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 188 FNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 188 lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
+|++..-..+.+. +.++.....+.+.|+++|+.++++-.. +.++++.+..++.
T Consensus 468 iWDLl~~~~~Pv~---------------s~~~~~~~l~~~~~s~~g~~lavGd~~------------G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 468 IWDLLQDDEEPVL---------------SQKVCSPALTRVRWSPNGKLLAVGDAN------------GTTHILKLSESLA 520 (555)
T ss_pred hhhhhccccCCcc---------------cccccccccceeecCCCCcEEEEecCC------------CcEEEEEcCchhh
Confidence 9986543322221 011111234567889999988876443 3788888876666
Q ss_pred ccCchHHHHHH
Q 004298 268 SKRKDELYQVA 278 (763)
Q Consensus 268 ~~~~~~l~~la 278 (763)
...+++-..++
T Consensus 521 ~~~~~e~~~~~ 531 (555)
T KOG1587|consen 521 VPSPNEKALFA 531 (555)
T ss_pred ccCcchHHHHH
Confidence 65555433333
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=121.29 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCeEEEEEccC----ceEE---Ee-cCCCcEEEEEEccCCC-EEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPEKDL----LAMATEDSKILLHRFNW----QRLW---TI-SPGKSVTSLCWRPDGK-AIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~~~l----LA~~s~Dg~V~v~~l~~----~~v~---~~-~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lw 88 (763)
.+-..++|++.++. ||.|.+||.|.+|+... +..- +. +|.+.|.++.|++.+. .||+|++||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999998865 99999999999999843 2221 11 2788999999999554 99999999999999
Q ss_pred EccCCeEEEEecc--cCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLKS--HTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~~--h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
|+.+-+.-.+... -.+.|.+++|+..-. .+++++ .++...+||++.+.+.+.-...+. ...+..
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s------~sg~~~iWDlr~~~pii~ls~~~~-------~~~~S~ 211 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS------PSGRAVIWDLRKKKPIIKLSDTPG-------RMHCSV 211 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC------CCCCceeccccCCCcccccccCCC-------ccceee
Confidence 9987544333311 246899999987654 567776 788999999997633322111111 011223
Q ss_pred eecccCCCeeEEEEEcCCC--cEEEEEcC
Q 004298 166 LANSSHQRFSILCSGDKDG--SICFNIFG 192 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG--~I~lw~~~ 192 (763)
+.|.++..-.+++...+|+ .|.+|+.+
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 5565544434444433333 68899854
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-09 Score=118.29 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.|+.|..+|.++++|++|..|+||.. ++.++.+.. |...|+.++.+.+..++|+++.|..|++|-+.+|..+..+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 4999999999999999999999999998 666666665 77889999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+|++.|++|+|+|-. +.+ .||++++||.+
T Consensus 272 ghtgavtaiafsP~~----sss------~dgt~~~wd~r 300 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA----SSS------DDGTCRIWDAR 300 (1113)
T ss_pred ccccceeeeccCccc----cCC------CCCceEecccc
Confidence 999999999999864 334 79999999987
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=102.10 Aligned_cols=160 Identities=20% Similarity=0.272 Sum_probs=113.4
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccC-CeE
Q 004298 23 QIKIAEWNP--EKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVEN-GKL 95 (763)
Q Consensus 23 ~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~-g~~ 95 (763)
..++-+||| +++.+|+. .|+++..|++ +..+.|.+. ||..|..+.|+|+-+ +|++|++||.|+|||.++ ...
T Consensus 172 ~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred eecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 356778999 67887754 5899999999 667888886 899999999999776 678899999999999984 567
Q ss_pred EEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCC-----------CC---------cccCCcc
Q 004298 96 LRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQM-----------PG---------LVSGDTG 154 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-----------~~---------~~s~~~~ 154 (763)
+..+.+|...|+++.|+|.. +++.+++ .|..+.+|......... .. ...+...
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~------SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ 324 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGG------SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE 324 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecC------CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc
Confidence 88899999999999999865 5667777 68888887554311000 00 0001111
Q ss_pred cccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 155 FTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
..+..++++....|+..+. =++++-+.||.+.|..
T Consensus 325 tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISS 359 (370)
T ss_pred cccccccceEEEeeccCCC-eeEEEeccCceEEeec
Confidence 1223344555555544333 3788888888887653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-08 Score=108.52 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEE-EcCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVG-LEDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg-~~Dg--~V~lwdve~g~~ 95 (763)
.+...+|+|+++.||.++.+ ..|++|++.+.....+. ......+.+|+|||+.|+.. +.+| .|++||+.+++.
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 47889999999999987743 46999999544333332 23345678999999988654 4555 599999988775
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+|+|+.++..+
T Consensus 285 -~~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 285 -TRLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred -EECccCCCCccceEECCCCCEEEEEE
Confidence 45555555667899999999887665
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-09 Score=109.57 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+..|..+.++|+. +++++++.|..|++|++ +...+.-+- |...|.++.|++||.+||+++.|.++++|++...+
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 4569999999987 78999999999999999 555555553 77899999999999999999999999999987432
Q ss_pred EEEE----------------------------ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC---CC
Q 004298 95 LLRS----------------------------LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR---IP 143 (763)
Q Consensus 95 ~~~~----------------------------l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~---~~ 143 (763)
.... -..|...|-|+.|-- .++.+-| -++.|.+|..... ..
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks------cenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS------CENAIVCWKPGKLEESIH 286 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecc------cCceEEEEecchhhhhhh
Confidence 1111 113566677777753 4555544 4667888865211 11
Q ss_pred CCCCcccCCcccc--cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeec
Q 004298 144 QMPGLVSGDTGFT--DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 144 ~l~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
......+..+.+. .-....+.-+.+.+++.+++||.|...|+|.+|+++..+-..... .+.+ .-.
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt-------l~~s------~~~ 353 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT-------LTHS------KSG 353 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce-------EEec------ccc
Confidence 1100011111111 111222334556777888999999999999999977543221110 0000 111
Q ss_pred cceeeEEecCCCCEEEEEeecC
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+.+||.||..|++.|.++
T Consensus 354 ~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 354 STVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred ceeeeeeecccCcEEEEEeCCC
Confidence 3588999999999999999876
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=96.80 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCc---------------eEEEecCCCcEEEEEEc-------cCCCEEEEEEc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQ---------------RLWTISPGKSVTSLCWR-------PDGKAIAVGLE 81 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---------------~v~~~~~~~~V~~l~ws-------pDG~~Lasg~~ 81 (763)
.+.+.|+|||.-|.+-+.|..+.+|++... .......+..|..-+|= |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999998321 12233356778888885 78889999999
Q ss_pred CCcEEEEEccCCeEEEEeccc--CC---ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC---CcccCCc
Q 004298 82 DGTITLHDVENGKLLRSLKSH--TV---AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP---GLVSGDT 153 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~h--~~---~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~---~~~s~~~ 153 (763)
+.-|++||.-+|+...++++. .. .-.++.|+|||..+..| ..+.|++||+..+-...+ ....+..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-------ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-------YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-------ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 999999999999998887653 22 45689999999999888 589999999833211111 0011110
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceeeEEecCC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD 232 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpD 232 (763)
+ ....+.++.+.+ .+...+++|+...++-||.-+. -+.... + -..+.|+.++|.+|
T Consensus 205 g----q~giisc~a~sP-~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----------g-------gh~gGvThL~~~ed 261 (406)
T KOG2919|consen 205 G----QKGIISCFAFSP-MDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----------G-------GHGGGVTHLQWCED 261 (406)
T ss_pred c----ccceeeeeeccC-CCCcceeeecccceeeeEecCCCCceeee-----------c-------ccCCCeeeEEeccC
Confidence 0 011122233322 2335899999888887774221 111110 0 11246899999999
Q ss_pred CCEEEEEee
Q 004298 233 LFHLTVLCS 241 (763)
Q Consensus 233 g~~Llv~~~ 241 (763)
|++|++++.
T Consensus 262 Gn~lfsGaR 270 (406)
T KOG2919|consen 262 GNKLFSGAR 270 (406)
T ss_pred cCeeccccc
Confidence 999998765
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=95.96 Aligned_cols=158 Identities=16% Similarity=0.319 Sum_probs=105.8
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEcc-----C-ceEE----Eec-CCCcEEEEEEcc--CCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFN-----W-QRLW----TIS-PGKSVTSLCWRP--DGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~-----~-~~v~----~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~ 86 (763)
+.|..+.|-+ =|+.+|+++.|+++.||.-. . .+-| ++. ....|+.++|.| -|-.+|+++.||.+|
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 4499999965 47999999999999999851 1 1223 232 456799999999 577999999999999
Q ss_pred EEEccCC------eEEEEec-------ccCCceeEEEeecCC---CceeccCCCCCcccCCceeecCCCCC------CCC
Q 004298 87 LHDVENG------KLLRSLK-------SHTVAVVCLNWEEDA---QPSKNDFGNIPTYEDRTSRFFPPAPR------IPQ 144 (763)
Q Consensus 87 lwdve~g------~~~~~l~-------~h~~~V~~l~ws~~~---~~l~s~s~~~~~~~d~~i~~wd~~~~------~~~ 144 (763)
||+.-+- .+.+.+. .+..+-.|+.|+|.- +.++.|+.. ..-.-+.+.+|..... ...
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e-~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDE-DAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEccc-CCccccceEEEEecCCcceeeeehh
Confidence 9986543 2233333 345678899999743 567777633 1112346677644322 122
Q ss_pred CCCcccCCcccccCCcccccceecccC--CCeeEEEEEcCCCcEEEEEcC
Q 004298 145 MPGLVSGDTGFTDDSEDSFRELANSSH--QRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 145 l~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~L~sgs~DG~I~lw~~~ 192 (763)
++ ++ ...+..+.|+++ ....+|++++.|| |+||..+
T Consensus 219 L~----d~-------~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 219 LP----DH-------TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred cC----CC-------CCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 22 22 233344555553 4568999999999 9999655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=101.58 Aligned_cols=204 Identities=9% Similarity=-0.027 Sum_probs=123.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcc--C---ceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPEKDLLAMATE-DSKILLHRFN--W---QRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~--~---~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
++....++++|+++++++++. ++.|.+|+++ + +.+..+.......+++++|||+++.+++ .++.|.+||+.+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 345678999999998887764 7899999984 2 2233333334577889999999886655 6799999999763
Q ss_pred eEEE-------EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcccccCCccccc
Q 004298 94 KLLR-------SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 94 ~~~~-------~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~ 164 (763)
..+. .+.. .....++.|+|+++++.+.. ..++++.+|+.......+. ........-. .... .
T Consensus 159 g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~--~~~~-~ 229 (330)
T PRK11028 159 GHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDPHGEIECVQTLDMMPADF--SDTR-W 229 (330)
T ss_pred CcccccCCCceecCC-CCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcC--CCCc-c
Confidence 3221 1111 34567899999999887664 1488999998763211110 0000000000 0000 0
Q ss_pred ceecccCCCeeEEEEEc-CCCcEEEEEcCce-----eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 165 ELANSSHQRFSILCSGD-KDGSICFNIFGIF-----PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~-----~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
......++++++++++. .++.|.+|+++.- .++.++ ++ .....++++|||++|++
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~---------~~----------~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP---------TE----------TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe---------cc----------ccCCceEECCCCCEEEE
Confidence 11223457777777775 4789999976421 112111 11 01236799999999999
Q ss_pred EeecCccccccCCCCCCcEEEEEee
Q 004298 239 LCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 239 ~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
+...+ ..+.++.+|
T Consensus 291 a~~~~-----------~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKS-----------HHISVYEID 304 (330)
T ss_pred EEccC-----------CcEEEEEEc
Confidence 86532 266676664
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=92.06 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=91.4
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-------CceEEEecC--------CCcEEEEEEccCCCEEEEE
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-------WQRLWTISP--------GKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-------~~~v~~~~~--------~~~V~~l~wspDG~~Lasg 79 (763)
.|+.| |..++|. .++|.+|+ ||.|+-|..+ -+++|...+ -..|+++-..|....+..+
T Consensus 60 ahdgp----iy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 60 AHDGP----IYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred ccCCC----eeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence 36666 9999998 45555554 6999877762 235676652 2368999999987777778
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
+.|+.++-||+|+|+..+.+++|++.|.|+.-......+.+|+ +||++|+||.++.
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~------EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA------EDGTVRVWDTKTQ 188 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC------CCccEEEEecccc
Confidence 8999999999999999999999999999999855556677888 9999999999873
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=96.54 Aligned_cols=203 Identities=17% Similarity=0.145 Sum_probs=121.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC----ceE-----------EEecCCCcEEEEEEccCCCEEEEEE-cCCc
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNW----QRL-----------WTISPGKSVTSLCWRPDGKAIAVGL-EDGT 84 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~----~~v-----------~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~ 84 (763)
..|++++|-|-+ .-+|+|+..| |.+|..+. .+. ..-+....|+++.|.+||..+++++ .|..
T Consensus 141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence 349999999966 5677776555 88998732 221 1111224799999999999999988 7889
Q ss_pred EEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC-CcccCCcccccCCcccc
Q 004298 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP-GLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~-~~~s~~~~~~~~~~~~~ 163 (763)
|.|||+.+|..+.-....-+.++-+.|+||+..+..+. -|+..++|+........+ ...++ .+
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt------~davfrlw~e~q~wt~erw~lgsg----------rv 283 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT------CDAVFRLWQENQSWTKERWILGSG----------RV 283 (445)
T ss_pred EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec------ccceeeeehhcccceecceeccCC----------ce
Confidence 99999999877655544467899999999999877666 689999996554322111 11111 12
Q ss_pred cceecccCCCee-EEEEEcCCCcEEEEEcCce----e-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 164 RELANSSHQRFS-ILCSGDKDGSICFNIFGIF----P-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 164 ~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~----~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
+...|. +.+. +|.+.+..-.++--.+... . .+.+.-+..+...........-++.-+++.+++|.|.|.+|+
T Consensus 284 qtacWs--pcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 284 QTACWS--PCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeeec--CCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 223343 4443 3444443333332222111 0 111111111111111111111233446788999999999999
Q ss_pred EEeecC
Q 004298 238 VLCSGQ 243 (763)
Q Consensus 238 v~~~d~ 243 (763)
+...++
T Consensus 362 v~fKg~ 367 (445)
T KOG2139|consen 362 VIFKGQ 367 (445)
T ss_pred EEEcCC
Confidence 988765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-09 Score=76.76 Aligned_cols=46 Identities=39% Similarity=0.854 Sum_probs=42.7
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT 57 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~ 57 (763)
|+.-+++.++++|.+++|||+++++|+++.+|.|.+||++||++|+
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw~ 47 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIWS 47 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCccC
Confidence 4566788999999999999999999999999999999999999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-08 Score=98.49 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=115.8
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.|+++ |.++..++-...+++|+.|++|++|+. +...+..+..+++|.|+.. .|..|++|+.|..|.+||+++.
T Consensus 92 th~~~----i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 92 THDEG----IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cCCCc----eEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 35555 999999999999999999999999999 4556667777888988855 5779999999999999999976
Q ss_pred eEEEEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceee--cCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 94 KLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRF--FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~--wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
....+.+ .-.-.+.|++.-|++.-.+.++ -+|.+-+ +|..+......-.+..|.....+.+.....-...
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS------ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSS------IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEe------ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 5443222 2245789999999887777776 6777655 4544221111112222222111112222222344
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+++....|++|+.||.|.+|+...
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred eccccceEEecCCCceEEEccCcc
Confidence 567778899999999999997543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-08 Score=98.23 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=120.3
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCeEE--EEecccC-Cce
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGKLL--RSLKSHT-VAV 106 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~~~--~~l~~h~-~~V 106 (763)
..+|++-..|.|++|+. +++.+-.++ +...++.++|.. .+..+.+++.||+|++||++..... ..+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56888999999999999 777777776 556677888877 4678999999999999999865433 3344444 456
Q ss_pred eEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcE
Q 004298 107 VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSI 186 (763)
Q Consensus 107 ~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I 186 (763)
.|++-+.+++.+++|. -..-.+-.+.+||.+.....+......|. +.+..+.+.+ .+.++|++|+.||-|
T Consensus 121 ~~ld~nck~~ii~~Gt--E~~~s~A~v~lwDvR~~qq~l~~~~eSH~-------DDVT~lrFHP-~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGT--ELTRSDASVVLWDVRSEQQLLRQLNESHN-------DDVTQLRFHP-SDPNLLLSGSVDGLV 190 (376)
T ss_pred eEeeccCcCCeEEecc--ccccCceEEEEEEeccccchhhhhhhhcc-------CcceeEEecC-CCCCeEEeecccceE
Confidence 6777666677777664 12224778899999875433332222222 2233344433 345899999999999
Q ss_pred EEEEcCceeeeeeeecccccccccCCCCCceeee--ccceeeEEecCCC-CEEEEEeecC
Q 004298 187 CFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLL--NASIYKVALSKDL-FHLTVLCSGQ 243 (763)
Q Consensus 187 ~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~--~~~I~~v~~SpDg-~~Llv~~~d~ 243 (763)
.+++...-+-. +..+... -.+|..+.|..++ +.+++++...
T Consensus 191 nlfD~~~d~Ee----------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 191 NLFDTKKDNEE----------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred EeeecCCCcch----------------hhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence 99985432110 1111111 1358889998887 4566665533
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-08 Score=98.12 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=114.4
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE-----ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT-----ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~-----~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
|++. |+.++|+|..+.|++++.|..-+||.......|. +.++..++++.|+|.++.||+|+.-..|.+|-.
T Consensus 54 Hd~~----vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~ 129 (361)
T KOG1523|consen 54 HDKI----VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY 129 (361)
T ss_pred hCcc----eeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence 5666 9999999999999999999999999983333333 237788999999999999999999999999988
Q ss_pred cCCeEE----EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC-------CCCCCCCCCcccCCcccccCC
Q 004298 91 ENGKLL----RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP-------APRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 91 e~g~~~----~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~-------~~~~~~l~~~~s~~~~~~~~~ 159 (763)
|....- +.-+.+.+.|+++.|+|++-+++.|+ -|+..|+|.. ++..++-.. .......+.+.
T Consensus 130 E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs------~D~k~rVfSayIK~Vdekpap~pWgs-k~PFG~lm~E~ 202 (361)
T KOG1523|consen 130 EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS------TDGKCRVFSAYIKGVDEKPAPTPWGS-KMPFGQLMSEA 202 (361)
T ss_pred ecccceehhhhhCCccccceeeeeccCCcceecccc------cCcceeEEEEeeeccccCCCCCCCcc-CCcHHHHHHhh
Confidence 743321 22235678999999999999999998 7888888732 221110000 00000000000
Q ss_pred -cccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 160 -EDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 160 -~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...--.....+++.++.|+-.+.|+.+.+-+...
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 0000012234567888899999999998876443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-07 Score=94.41 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec----CCCcEEEEEEccCCCEEEEEE--cCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS----PGKSVTSLCWRPDGKAIAVGL--EDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~----~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdve~g 93 (763)
|..|.++..+. +.|+++-. +.|+||+++ .+.+.++. +...+.++..++.+.++|.-+ ..|.|.|||+.+-
T Consensus 87 pt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 34488888874 34444443 349999994 44455554 334577888888888999865 5799999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+..+..|.+.+.|++|+++|..+|++|
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATAS 192 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEec
Confidence 99999999999999999999999999998
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-06 Score=95.28 Aligned_cols=197 Identities=11% Similarity=0.091 Sum_probs=118.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEEccCc-e---EEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC-Ce
Q 004298 22 SQIKIAEWNPEKDLLAMAT-EDSKILLHRFNWQ-R---LWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN-GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~-~---v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~-g~ 94 (763)
+....++++|+++.|++++ .++.|.+|+++.. . +-.+..+.....++|+|||+++++++ .++.|.+|++++ |.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 3467789999999887664 5788999998532 2 22333445677899999999888876 589999999963 42
Q ss_pred ---EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 ---LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ---~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+. +.....++.++|+++++.+++ ..++.+.+||..+. ..+............ ..... ...++
T Consensus 115 ~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~-----~~~~~v~v~d~~~~-g~l~~~~~~~~~~~~--g~~p~--~~~~~ 183 (330)
T PRK11028 115 PVAPIQIIE-GLEGCHSANIDPDNRTLWVPC-----LKEDRIRLFTLSDD-GHLVAQEPAEVTTVE--GAGPR--HMVFH 183 (330)
T ss_pred CCCceeecc-CCCcccEeEeCCCCCEEEEee-----CCCCEEEEEEECCC-CcccccCCCceecCC--CCCCc--eEEEC
Confidence 233332 234567788999998875544 36789999988652 111100000000000 00111 12345
Q ss_pred CCeeEEEEEcC-CCcEEEEEcCc----e-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 172 QRFSILCSGDK-DGSICFNIFGI----F-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 172 ~~~~~L~sgs~-DG~I~lw~~~~----~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++++++++. +++|.+|++.. + .+.++.. .+... .+ . + | ...+.++|||++++++..
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~-~~---~--~-~---~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADF-SD---T--R-W---AADIHITPDGRHLYACDR 247 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcC-CC---C--c-c---ceeEEECCCCCEEEEecC
Confidence 77777777665 99999998752 1 1122211 00000 00 0 0 1 235789999999999754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.9e-08 Score=104.20 Aligned_cols=198 Identities=12% Similarity=0.181 Sum_probs=139.1
Q ss_pred EeecCCCCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEE-e-cCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 13 QLQFDKPVASQIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWT-I-SPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 13 ~~~~~k~~~~~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~-~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
.+.+.|+ |..+.|+..|++||++..+ ..|.||.+..++... + +.++.|.++.|+|.-.+|++++. ..|+|
T Consensus 517 ~I~~~k~----i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 517 VIKHPKS----IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred EEecCCc----cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEE
Confidence 3456666 9999999999999998765 469999996544432 2 25677999999999888888875 67999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC---CCCCCCcccCCcccccCCccccc
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR---IPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~---~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
||+..++++.++......|..|+.+|.|..++.++ .|+.+..+|+.-. ...+.. |...+
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs------~d~k~~WfDldlsskPyk~lr~----H~~av-------- 653 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS------YDKKMCWFDLDLSSKPYKTLRL----HEKAV-------- 653 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec------CCCeeEEEEcccCcchhHHhhh----hhhhh--------
Confidence 99988888877766677899999999998888888 7888888876532 122221 11111
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeee-----eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEE
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIG-----KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig-----~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
...+++....++++|+.||++.++--..+..- -+++..+.++. +.-+..|.++.|.|..-.|+.+
T Consensus 654 -r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~---------~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 654 -RSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE---------KTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred -hhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce---------eecccceEeecccCCCceEEec
Confidence 12357789999999999999999842222111 12222222121 1112347889999998899888
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
+.++
T Consensus 724 GAd~ 727 (733)
T KOG0650|consen 724 GADG 727 (733)
T ss_pred CCCc
Confidence 7665
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-07 Score=97.39 Aligned_cols=187 Identities=27% Similarity=0.314 Sum_probs=129.5
Q ss_pred CeEEEEE-cCCCC-EEEEEeC-CCeEEEEEccC--ceEEEec-CCCcEEEEEEccCCCEEEEEEc-CCcEEEEEccCCeE
Q 004298 23 QIKIAEW-NPEKD-LLAMATE-DSKILLHRFNW--QRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~-sP~~~-lLA~~s~-Dg~V~v~~l~~--~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve~g~~ 95 (763)
.+..+.+ ++++. .++..+. |+.+.+|+... ..+..+. |...|.+++|+|+++.+++++. |+.+++|++.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 4677777 88887 5555444 89999999964 5554443 7788999999999999999986 99999999999899
Q ss_pred EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+..+..|...|.++.|+|++. .+++++ .|+.+++||..... .......++... . +. .+.+.+
T Consensus 191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~d~~i~~wd~~~~~-~~~~~~~~~~~~-----~-~~----~~~~~~ 253 (466)
T COG2319 191 LSTLAGHTDPVSSLAFSPDGGLLIASGS------SDGTIRLWDLSTGK-LLRSTLSGHSDS-----V-VS----SFSPDG 253 (466)
T ss_pred EEeeccCCCceEEEEEcCCcceEEEEec------CCCcEEEEECCCCc-EEeeecCCCCcc-----e-eE----eECCCC
Confidence 999999999999999999997 555545 79999999665210 000011111111 0 11 233444
Q ss_pred eEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 175 SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
..+++++.|+.+++|+........... . .....+.++.|+|++..++....+
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~---~-------------~~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTL---S-------------GHSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEE---e-------------cCCccEEEEEECCCCCEEEEeeCC
Confidence 778899999999999866443211100 0 002357778888888888774443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.8e-08 Score=101.42 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=112.9
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccCc---eEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE-
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNWQ---RLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~---~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~- 95 (763)
++|.++.|+|.. +.+.+.+.||+|++-++++. .+...+. ......+.|+.+...+..|..=|...+||.++++.
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 349999999965 78889999999999888543 3334332 23567788988888888888777999999987554
Q ss_pred EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCC-CC-cccCCcccccCCcccccceecccCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PG-LVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~-~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
...+..|...|++++++|... ++++++ .|++.++||++.-..+. |- +.-.|.. .+.. ..++|
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s------~D~T~kIWD~R~l~~K~sp~lst~~Hrr-------sV~s--AyFSP 379 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATAS------LDQTAKIWDLRQLRGKASPFLSTLPHRR-------SVNS--AYFSP 379 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecc------cCcceeeeehhhhcCCCCcceecccccc-------eeee--eEEcC
Confidence 677788999999999999875 678888 89999999998632222 10 0111211 1222 23445
Q ss_pred CeeEEEEEcCCCcEEEEEcC
Q 004298 173 RFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~ 192 (763)
.+-.|++-+.|.+|++|+-.
T Consensus 380 s~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 380 SGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCceEeeccCCceEEeecc
Confidence 55458999999999999854
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=99.26 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-------EEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-------LWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-------v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+|.++.+.+..+.=++|+.+..+..|.++++. ..++ .+..|..+..+||+|.+|+++.|+.||+|+.++..
T Consensus 206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence 349999999877777788888899999986541 1111 23357889999999999999999999999999999
Q ss_pred EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.+..++.|.+.|.+++|+|+...++.++ .|.+|-+|++
T Consensus 285 pLAVLkyHsagvn~vAfspd~~lmAaas------kD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHSAGVNAVAFSPDCELMAAAS------KDARISLWKL 322 (323)
T ss_pred chhhhhhhhcceeEEEeCCCCchhhhcc------CCceEEeeec
Confidence 9999999999999999999999999998 9999999974
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=105.49 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEE---ec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNW--QRLWT---IS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~v~~---~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+++.++||+++++|+|..||+|.+|+-.+ ..-.+ ++ |..+|+++.|++||.+|.+|+..|.+-+|.+++++ ..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence 79999999999999999999999999754 11111 11 55789999999999999999999999999999988 33
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC---cccccceecccCCCe
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS---EDSFRELANSSHQRF 174 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~ 174 (763)
-+..-.++|..+.|+||+...+..- .|..+.+...... ....+.+|........ ..++. ...+.+++-
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~------~DNqI~li~~~dl--~~k~tIsgi~~~~~~~k~~~~~l~-t~~~idpr~ 357 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVL------EDNQIHLIKASDL--EIKSTISGIKPPTPSTKTRPQSLT-TGVSIDPRT 357 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEe------cCceEEEEeccch--hhhhhccCccCCCccccccccccc-eeEEEcCCC
Confidence 3444468999999999998776654 6887777654221 0001111111110000 00010 223345666
Q ss_pred eEEEEEcCCCcEEEEEc
Q 004298 175 SILCSGDKDGSICFNIF 191 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~ 191 (763)
+.++-.+..|.|.+|++
T Consensus 358 ~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDL 374 (792)
T ss_pred CceeecCCCceEEEEec
Confidence 78888899999999964
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-08 Score=106.04 Aligned_cols=113 Identities=22% Similarity=0.384 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEcc---------Cc--------eE--EEec-----------CCCcEEEEEEc
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFN---------WQ--------RL--WTIS-----------PGKSVTSLCWR 70 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~---------~~--------~v--~~~~-----------~~~~V~~l~ws 70 (763)
..|+++.|-|.+ .++.++-.+|.+++|+.. ++ .+ |.-+ ....|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 469999999966 456667788999999751 01 00 0000 12368899999
Q ss_pred cCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 71 PDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 71 pDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|||++||+.+.||.+||+|..+.+++..++..-+...|++|+|||+++++|+ +|.-+.+|....
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------EDDLVtVwSf~e 363 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------EDDLVTVWSFEE 363 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC------CcceEEEEEecc
Confidence 9999999999999999999999888888887788999999999999999999 899999997654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.2e-07 Score=99.31 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEE-EcCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVG-LEDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg-~~Dg--~V~lwdve~g~~ 95 (763)
.+...+|+|+|+.+|.++.+ ..|++|++...+...+ .....+.+.+|+|||+.|+.. ..++ .|++|++.+++.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 37888999999999987654 4799999954433333 344556789999999988754 3344 588899887754
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+|+++.++..+
T Consensus 271 -~~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 271 -TRLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred -EECCCCCCCCCCEEECCCCCEEEEEE
Confidence 34445555566789999998876554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.6e-08 Score=98.86 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-------eEE--EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-------RLW--TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-------~v~--~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+-|.++.||.+++.||+|+.|..+.+|.+..- +|- .-.|...|.|++|....+++.+|..+|+|.+.|+++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 44899999999999999999999999998432 221 112557899999999999999999999999999999
Q ss_pred CeEEEEecccC---CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC-CC-cccCCcccccCCccccccee
Q 004298 93 GKLLRSLKSHT---VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PG-LVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 93 g~~~~~l~~h~---~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~-~~s~~~~~~~~~~~~~~~~~ 167 (763)
.+.+..+. |. +.|..+.-+|....+++.+ .++.+.|||.+...... +- .......|. ...
T Consensus 137 ~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t------~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~--------t~~ 201 (609)
T KOG4227|consen 137 KQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVT------RAKLVSFIDNRDRQNPISLVLPANSGKNFY--------TAE 201 (609)
T ss_pred ceeeeeec-ccCcccceeecccCCCCceEEEEe------cCceEEEEeccCCCCCCceeeecCCCccce--------eee
Confidence 99888774 44 4899999999888888777 89999999987532110 00 000001111 111
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+.+ ..-.+|++.+..|-+.+|+..+.
T Consensus 202 F~P-~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 202 FHP-ETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ecC-CCceeEEeccccCCCCceeeccc
Confidence 111 22357899999999999986653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=91.42 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=88.1
Q ss_pred EEEEcCCC--CEEEE-EeCCCeEEEEEccCceE---EEe-cCCCcEEEEEEccCCCEEEEEEcCCc-EEEEEccCCeEEE
Q 004298 26 IAEWNPEK--DLLAM-ATEDSKILLHRFNWQRL---WTI-SPGKSVTSLCWRPDGKAIAVGLEDGT-ITLHDVENGKLLR 97 (763)
Q Consensus 26 ~l~~sP~~--~lLA~-~s~Dg~V~v~~l~~~~v---~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~-V~lwdve~g~~~~ 97 (763)
.++.+|.. .+||. |-.-|+|.|.++.+.+. ..+ .|...|.|++.+-+|..+|+++..|+ |||||.++|+.+.
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 34555644 45554 44558999999955544 334 38899999999999999999999998 6999999999999
Q ss_pred Eeccc--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SLKSH--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l~~h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++.. ...|.||+|+|+..+++.+| +-|++.+|.++.
T Consensus 219 E~RRG~d~A~iy~iaFSp~~s~LavsS------dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNSSWLAVSS------DKGTLHIFSLRD 257 (346)
T ss_pred eeecCCchheEEEEEeCCCccEEEEEc------CCCeEEEEEeec
Confidence 88743 36899999999999999998 889999997665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=98.33 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=71.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCC--cEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDG--TITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg--~V~lwdve~g~~ 95 (763)
.+...+|+|+|+.||..+.+ ..|++|++.+.....+. ....+.+.+|+|||+.|+... .+| .|++||+.+++.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 37889999999999877644 36888898544433443 233456799999999888543 444 588889987765
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
. .+..+........|+|+|+.++..+
T Consensus 280 ~-~lt~~~~~~~~~~~spDg~~i~f~s 305 (430)
T PRK00178 280 S-RVTNHPAIDTEPFWGKDGRTLYFTS 305 (430)
T ss_pred E-EcccCCCCcCCeEECCCCCEEEEEE
Confidence 3 4555566677889999998776544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=100.42 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=107.8
Q ss_pred cceeEee-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc--Cc--eEE---Ee-----cCCCcEEEEEEccCCCE
Q 004298 9 VLPFQLQ-FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN--WQ--RLW---TI-----SPGKSVTSLCWRPDGKA 75 (763)
Q Consensus 9 ~~~~~~~-~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~--~v~---~~-----~~~~~V~~l~wspDG~~ 75 (763)
+.+++++ |+.| |.|++..++++.+.+|+.||+|+.|++. .. -.+ .+ -|.++|+.+++|+.-..
T Consensus 335 epi~tfraH~gP----Vl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGP----VLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred eeeEEEecccCc----eEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 3445554 5555 9999999999999999999999999873 11 111 11 16789999999999999
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecc---c-------------------------------------------------C
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKS---H-------------------------------------------------T 103 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~---h-------------------------------------------------~ 103 (763)
|++++.||+|++|....... .++.. | .
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999998754333 11110 0 0
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC--CCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
..+..+.|.|++.+..++. +|+.|+++|...... ....+..+.+ .....+++-+|++|+
T Consensus 490 ~~in~vVs~~~~~~~~~~h------ed~~Ir~~dn~~~~~l~s~~a~~~svt-------------slai~~ng~~l~s~s 550 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAH------EDRSIRFFDNKTGKILHSMVAHKDSVT-------------SLAIDPNGPYLMSGS 550 (577)
T ss_pred CccceEEecCCCCeeEecc------cCCceecccccccccchheeeccceec-------------ceeecCCCceEEeec
Confidence 2344455566555555554 788888888765211 1111111111 223568889999999
Q ss_pred CCCcEEEEEcCc
Q 004298 182 KDGSICFNIFGI 193 (763)
Q Consensus 182 ~DG~I~lw~~~~ 193 (763)
.||.+.+|..+.
T Consensus 551 ~d~sv~l~kld~ 562 (577)
T KOG0642|consen 551 HDGSVRLWKLDV 562 (577)
T ss_pred CCceeehhhccc
Confidence 999999997544
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-07 Score=97.59 Aligned_cols=155 Identities=29% Similarity=0.415 Sum_probs=115.6
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCeEEEEEcc-CceEEEec-CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATE-DSKILLHRFN-WQRLWTIS-PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~-~~~v~~~~-~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|..++|+|++..+++++. |+.+.+|+.. +..+..+. |...|.+++|+|+|. .+++++.|+.|++||..++..+.
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~ 235 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence 45889999999998888885 9999999995 45666665 688999999999998 55555899999999998888888
Q ss_pred -EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 -SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 -~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+..|...+ ...|++++..+++++ .|+.+++|+........... .++ ...+..+ .+.+....
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~~~-~~~-------~~~v~~~--~~~~~~~~ 298 (466)
T COG2319 236 STLSGHSDSV-VSSFSPDGSLLASGS------SDGTIRLWDLRSSSSLLRTL-SGH-------SSSVLSV--AFSPDGKL 298 (466)
T ss_pred eecCCCCcce-eEeECCCCCEEEEec------CCCcEEEeeecCCCcEEEEE-ecC-------CccEEEE--EECCCCCE
Confidence 688888775 448999997777776 89999999987643211100 111 1222222 23445667
Q ss_pred EEEEcCCCcEEEEEcCc
Q 004298 177 LCSGDKDGSICFNIFGI 193 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~ 193 (763)
+++++.|+.+++|+...
T Consensus 299 ~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 299 LASGSSDGTVRLWDLET 315 (466)
T ss_pred EEEeeCCCcEEEEEcCC
Confidence 77788889999996554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=92.35 Aligned_cols=163 Identities=13% Similarity=0.217 Sum_probs=114.8
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCc-----eEEEecCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEcc
Q 004298 19 PVASQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQ-----RLWTISPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVE 91 (763)
Q Consensus 19 ~~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve 91 (763)
..+++++++.|+. +.+++.+++-|.+..||++..+ +---+.|.++|..|+|..+|. .||+.+.||.||++|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3445699999998 5689999999999999999433 223345999999999999664 88999999999999998
Q ss_pred CCeE---EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 92 NGKL---LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 92 ~g~~---~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
.-+. +..-..-..+...++|+++.. ++++-. .+...+.+.|++.+..+... ..+|.+ .++.+.
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-----~dS~~V~iLDiR~P~tpva~-L~~H~a-------~VNgIa 294 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-----MDSNKVVILDIRVPCTPVAR-LRNHQA-------SVNGIA 294 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhh-----cCCceEEEEEecCCCcceeh-hhcCcc-------cccceE
Confidence 5432 222222245778899998764 455432 24667888998864222211 223322 334566
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCcee
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
|.++.. +.+++++.|...-+|+....+
T Consensus 295 WaPhS~-~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 295 WAPHSS-SHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred ecCCCC-ceeeecCCcceEEEEeccccc
Confidence 776544 689999999999999976543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=102.75 Aligned_cols=163 Identities=13% Similarity=0.161 Sum_probs=107.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-----RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~ 94 (763)
.|+.++|||++++|++++.|.++.+|..... +.-..+ |..-|.+..|+||+++||+++.|++|++|...++ +
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~ 653 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK 653 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh
Confidence 4999999999999999999999999997211 111122 6667899999999999999999999999999877 4
Q ss_pred EEEE--ecccCCceeEEEeecCC----C-ceeccCCCCCcccCCceeecCCCCCC-CCCCCccc--CCcccccCCccccc
Q 004298 95 LLRS--LKSHTVAVVCLNWEEDA----Q-PSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVS--GDTGFTDDSEDSFR 164 (763)
Q Consensus 95 ~~~~--l~~h~~~V~~l~ws~~~----~-~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s--~~~~~~~~~~~~~~ 164 (763)
.+.. ...+...|+.++|.|-. . .++.|- +.|.|.+|.....- ..-..... ......-.....++
T Consensus 654 ~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl------e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~ 727 (764)
T KOG1063|consen 654 YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL------EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN 727 (764)
T ss_pred hhhhhchhccCCceeeEEeeccccccccceEEEEe------cccEEEEEecccccccccceeeeeccccccccChHHhhh
Confidence 4433 23467899999998742 1 345554 88999998743100 00000000 00000001123444
Q ss_pred ceecccC--------CCeeEEEEEcCCCcEEEEEc
Q 004298 165 ELANSSH--------QRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 165 ~~~~~~~--------~~~~~L~sgs~DG~I~lw~~ 191 (763)
.+.|.+. .....|++|+.|.+++++.+
T Consensus 728 rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv 762 (764)
T KOG1063|consen 728 RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNV 762 (764)
T ss_pred eeEeccccccccccccceeEEeeecccceeEEeec
Confidence 5555432 33456799999999998753
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=101.10 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=91.1
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec-ccCCceeEEEeecC--CCceeccCCCCCcccCCceeec
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK-SHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~-~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~w 136 (763)
|.++|+|+.|+.||.+|++|++|-.+.|||.-..|.++.+. +|...|.|+.|-|. ++.+++|+ .|+.|+++
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i~lf 122 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLIKLF 122 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceEEEE
Confidence 77899999999999999999999999999998888888874 79999999999984 46788887 89999999
Q ss_pred CCCCCCCCCCCcccCCcc-cccCCcccccceecccCCCe-eEEEEEcCCCcEEEEEcCc
Q 004298 137 PPAPRIPQMPGLVSGDTG-FTDDSEDSFRELANSSHQRF-SILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 137 d~~~~~~~l~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~-~~L~sgs~DG~I~lw~~~~ 193 (763)
|+.........+....+. ........++.+..+ +++ +++.++++||+|+-++++-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~--p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA--PNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecC--CCCCceEEEecCCcceeeecccC
Confidence 987421111111000000 000111223333333 333 7899999999999998665
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-06 Score=98.89 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC-C--eEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEE-EcCCc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED-S--KILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG-LEDGT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D-g--~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg-~~Dg~--V~lwdve~g~~ 95 (763)
.+....|||+|+.||..+.+ + .|++|++.+.....+.. .......+|+|||+.|+.. ..+|. |++||+++++.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 37789999999999876543 3 58888885443333322 2334578999999988764 55665 77788887765
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+||++.++..+
T Consensus 299 -~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 299 -TRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred -EECccCCCCccceEECCCCCEEEEEE
Confidence 44555556678899999999776554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-07 Score=104.46 Aligned_cols=194 Identities=16% Similarity=0.137 Sum_probs=126.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCC---eEEE
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENG---KLLR 97 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g---~~~~ 97 (763)
.-++|....-+|.++++-..|+|||. ..+.+.++. .+..|+++.-+- .|..|++|..||.|++||.+.. ..+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 45788886666666666788999999 455566665 345678776544 5799999999999999998743 3567
Q ss_pred EecccCCc--eeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 98 SLKSHTVA--VVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 98 ~l~~h~~~--V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+.|+.. |..+.+.++|- .+++|+ .+|.|++||++.......-....+. +..-.-.....+...
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs------~~G~I~~~DlR~~~~e~~~~iv~~~------~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGS------QDGDIQLLDLRMSSKETFLTIVAHW------EYGSALTALTVHEHA 1316 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeec------cCCeEEEEecccCcccccceeeecc------ccCccceeeeeccCC
Confidence 78889877 99999999875 488888 8999999999873111110000000 000000112245666
Q ss_pred eEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 175 SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.++++|+. +.|+||....-.++.+..... ..+... +++.+++|.|---.++++..|
T Consensus 1317 piiAsGs~-q~ikIy~~~G~~l~~~k~n~~----F~~q~~-------gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1317 PIIASGSA-QLIKIYSLSGEQLNIIKYNPG----FMGQRI-------GSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred CeeeecCc-ceEEEEecChhhhcccccCcc----cccCcC-------CCcceeeecchhHhhhhccCC
Confidence 79999998 999999876665555542211 011111 346789999964444444333
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-07 Score=96.69 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=99.2
Q ss_pred EEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC
Q 004298 65 TSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ 144 (763)
Q Consensus 65 ~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~ 144 (763)
.+++|++||..+++|+.||++|+|+..+-..+.....|...|.++.|+|||+++++-+ .| ..++|+......-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig------~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG------AD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec------CC-ceEEEEeccCchh
Confidence 6799999999999999999999999887777777778999999999999999999887 56 8999998764111
Q ss_pred CCCc-ccCCcccccCCcccccceecccCC-CeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeecc
Q 004298 145 MPGL-VSGDTGFTDDSEDSFRELANSSHQ-RFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNA 222 (763)
Q Consensus 145 l~~~-~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~ 222 (763)
.... .+....+. ..++...... ...+.+.-...|.|..|+.....-+.+- . .... .--+.
T Consensus 221 a~~t~~~k~~~~~------~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l--~--~~~~--------~~~~~ 282 (398)
T KOG0771|consen 221 ARKTPFSKDEMFS------SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL--R--LRKK--------IKRFK 282 (398)
T ss_pred hhcCCcccchhhh------hceecccCCCceEEEEEecCCCCceeEEEeeeecccccc--c--hhhh--------hhccC
Confidence 0000 11111111 1111111111 2233344445566776654433322110 0 0000 00123
Q ss_pred ceeeEEecCCCCEEEEEeecCc
Q 004298 223 SIYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 223 ~I~~v~~SpDg~~Llv~~~d~l 244 (763)
+|++++.|+||+++++++.++.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCc
Confidence 6899999999999999988763
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-06 Score=95.71 Aligned_cols=99 Identities=16% Similarity=0.037 Sum_probs=61.1
Q ss_pred eEEEEEcCCCCEEE---EEeCC--CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc-CC----cEEEEEccC
Q 004298 24 IKIAEWNPEKDLLA---MATED--SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DG----TITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA---~~s~D--g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg----~V~lwdve~ 92 (763)
+...+|||||+.++ +...+ ..|++.++.+.....+. ........+|+|||+.||..+. +| .+.+|++.+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 56789999997533 33333 35788888554333332 2234456899999999887663 23 344467665
Q ss_pred C---eEEEEecccCCceeEEEeecCCCceeccC
Q 004298 93 G---KLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g---~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+ +.......+........|+|||+.++..+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 3 33322322234457789999999777654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=100.81 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc----------eEEEec--------------------------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ----------RLWTIS-------------------------------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~----------~v~~~~-------------------------------- 59 (763)
+.|.+-.|+|+|.-|.+++.||.|++|.-.|. .++...
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRA 184 (737)
T ss_pred hhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEec
Confidence 45888899999999999999999999996542 222211
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|.+-|.++.|+|....|++|+.|-..++||.. |..+..-..|+.+|++++|+|+ ..++.+|
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee
Confidence 34458999999999999999999999999966 7777777789999999999999 6666666
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-06 Score=83.62 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=111.1
Q ss_pred cccccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec---CCCcEEEEEEccCCCEEEEE
Q 004298 5 EAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS---PGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 5 ~~~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~---~~~~V~~l~wspDG~~Lasg 79 (763)
+.+...+..+.+.++ |.++.+.+ +.|+++. .+.|.||.+ +-+++..+. +.+...+++=..+..+||.-
T Consensus 82 D~k~~~i~el~f~~~----I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 82 DLKERCIIELSFNSE----IKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cccCcEEEEEEeccc----eeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 344445556666666 88888875 4555554 678999998 344555443 22234444433355567665
Q ss_pred E-cCCcEEEEEccCCeE--EEEecccCCceeEEEeecCCCceeccCCCCCcccCCc-eeecCCCCC--CCCCCCcccCCc
Q 004298 80 L-EDGTITLHDVENGKL--LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT-SRFFPPAPR--IPQMPGLVSGDT 153 (763)
Q Consensus 80 ~-~Dg~V~lwdve~g~~--~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~-i~~wd~~~~--~~~l~~~~s~~~ 153 (763)
+ .-|.|.|.|+...+. ...+..|.+.|.|++.+.+|..+|++| ..|+ ||+||.... +..+.. |..
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS------tkGTLIRIFdt~~g~~l~E~RR---G~d 225 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS------TKGTLIRIFDTEDGTLLQELRR---GVD 225 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec------cCcEEEEEEEcCCCcEeeeeec---CCc
Confidence 5 679999999875444 467889999999999999999999998 5555 789998763 222111 110
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+.+ .+.+++++..+|+++|.-|++|++....
T Consensus 226 ------~A~i--y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 ------RADI--YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ------hheE--EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 1122 2345678889999999999999986443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-06 Score=95.81 Aligned_cols=211 Identities=18% Similarity=0.181 Sum_probs=123.8
Q ss_pred CeEEEEEcCCCC---EEEEEe-----------------CCCeEEEEEcc--CceEEEecCCCcEEEEEEcc-CCCEEEEE
Q 004298 23 QIKIAEWNPEKD---LLAMAT-----------------EDSKILLHRFN--WQRLWTISPGKSVTSLCWRP-DGKAIAVG 79 (763)
Q Consensus 23 ~V~~l~~sP~~~---lLA~~s-----------------~Dg~V~v~~l~--~~~v~~~~~~~~V~~l~wsp-DG~~Lasg 79 (763)
.+..+.|.|++. ..++.- .++.+.||++. .+.-..+.....|+|++|+| +...+|.|
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG 261 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGG 261 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEee
Confidence 377888888776 111111 12356777772 23334444567899999999 77888999
Q ss_pred EcCCcEEEEEccCCeE--EE----EecccCCceeEEEeecCCCc--eeccCCCCCcccCCceeecCCCCCCCCCCCcc--
Q 004298 80 LEDGTITLHDVENGKL--LR----SLKSHTVAVVCLNWEEDAQP--SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV-- 149 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~--~~----~l~~h~~~V~~l~ws~~~~~--l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~-- 149 (763)
+.+|.|.+||++.+.. .. ....|..+++.+.|..+-.- +++++ .||.+..|+++.-..+.....
T Consensus 262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s------sDG~i~~W~~~~l~~P~e~~~~~ 335 (555)
T KOG1587|consen 262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS------SDGSICSWDTDMLSLPVEGLLLE 335 (555)
T ss_pred ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe------cCCcEeeeeccccccchhhcccc
Confidence 9999999999987654 22 22368899999999876544 77777 799999997654211111100
Q ss_pred -cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEE-EEcCceeee--------eeeeccccc----------c-c
Q 004298 150 -SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF-NIFGIFPIG--------KINIHKFHV----------A-I 208 (763)
Q Consensus 150 -s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~l-w~~~~~~ig--------~~~i~~~~~----------~-~ 208 (763)
..+.+...........+.+.. .+-+.+++|+.+|.|.- ..-+..+.. .+.+|..+. . +
T Consensus 336 ~~~~~~~~~~~~~~~t~~~F~~-~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 336 SKKHKGQQSSKAVGATSLKFEP-TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred cccccccccccccceeeEeecc-CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 011000000111112222222 23357999999999986 221111111 111111111 1 1
Q ss_pred ccCCCCCceeeecc---------------ceeeEEecCCCCEEEEEee
Q 004298 209 PNADEQGTCRLLNA---------------SIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 209 ~s~~~~~~~~l~~~---------------~I~~v~~SpDg~~Llv~~~ 241 (763)
.+++ |-++++|+- .+++++|||--..++++..
T Consensus 415 ls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 415 LSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred eeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 2333 888999973 3889999998777776655
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.1e-07 Score=101.16 Aligned_cols=144 Identities=13% Similarity=0.048 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEE--EccCceEEEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC-CeEEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLH--RFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN-GKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~--~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~-g~~~~ 97 (763)
...++|+|+|+.|+.+. .+|.+.|| ++++..+..+. +...+.+..|+|||+.|+.++ .+|...||++.. +....
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 55789999999888765 57765555 55555555554 344578899999999887665 578888888753 22233
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+ .+.. .+..|+|+|+.++..+ .++ +..||......... .... . .....++++++.+
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~------~~~-i~~~Dl~~g~~~~l--t~~~---~--------~~~~~~sPdG~~i 386 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMIN------GDN-VVKQDLTSGSTEVL--SSTF---L--------DESPSISPNGIMI 386 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEc------CCC-EEEEECCCCCeEEe--cCCC---C--------CCCceECCCCCEE
Confidence 33 3333 5678999999888775 343 44577654211100 0000 0 0112356788899
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
+.++.+|.+.+|.
T Consensus 387 ~~~s~~g~~~~l~ 399 (429)
T PRK01742 387 IYSSTQGLGKVLQ 399 (429)
T ss_pred EEEEcCCCceEEE
Confidence 9999899888774
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=99.93 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+|..+.|=|---+||+++..|.+...|+ .|+.|..+..+ +.+..++-+|-...+-+|..+|+|.+|.....+.+.++-
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 3888999999999999999999999998 78888887754 578888999988899999999999999999889998999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.|.++|.+|++.++|++.++.+ .|+.+++||++..
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRNF 325 (545)
T ss_pred hcCCCcceEEECCCCcEEeecc------cccceeEeeeccc
Confidence 9999999999999999999998 8999999999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-05 Score=84.09 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-eEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS-KILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg-~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
++|....+.-+..-++.|+.|| .+-||+..+..+..+.. -+.|.++..+||||+++++.....+.+.|+++|+....=
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 4588888888888899999999 89999998888777764 478999999999999999999999999999999876655
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+...+-|+.+.|+|++++++-+-. ..+..+.|+++|+..
T Consensus 440 kS~~~lItdf~~~~nsr~iAYafP--~gy~tq~Iklydm~~ 478 (668)
T COG4946 440 KSEYGLITDFDWHPNSRWIAYAFP--EGYYTQSIKLYDMDG 478 (668)
T ss_pred ccccceeEEEEEcCCceeEEEecC--cceeeeeEEEEecCC
Confidence 566788999999999999887532 223456677776654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=92.11 Aligned_cols=165 Identities=12% Similarity=0.112 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCCCE-EEEEeCCCeEEEEEccCceE----------EEe-------------c-------C---C----Cc
Q 004298 22 SQIKIAEWNPEKDL-LAMATEDSKILLHRFNWQRL----------WTI-------------S-------P---G----KS 63 (763)
Q Consensus 22 ~~V~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~~v----------~~~-------------~-------~---~----~~ 63 (763)
...+.+..+|||++ +|+|.....|++|+++.--+ .++ . | | -.
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R 131 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR 131 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee
Confidence 44778999999986 56788899999999842100 000 0 0 0 01
Q ss_pred ----EEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 64 ----VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 64 ----V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
-..++++.-..-|.+++....|+=++++.|..+..+....+.++++..++...++++|. .+|.+.+||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt------~~g~VEfwDpR 205 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT------EDGVVEFWDPR 205 (703)
T ss_pred cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc------cCceEEEecch
Confidence 23445444333355566666788889999999999888778999999999999999998 89999999998
Q ss_pred CCC--CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 140 PRI--PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 140 ~~~--~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
.+. ..+....+ ..... +...........+.+++--+++|+.+|.|.||++...
T Consensus 206 ~ksrv~~l~~~~~-v~s~p-g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 206 DKSRVGTLDAASS-VNSHP-GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred hhhhheeeecccc-cCCCc-cccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 741 11111101 00000 0011111123345566889999999999999987653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-07 Score=103.70 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=112.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccC--ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE-Eeccc
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRFNW--QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR-SLKSH 102 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l~~--~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~-~l~~h 102 (763)
.+..+++.-++++|+.-+.|.+|+... ..+...-|.+.|.++.|+-||+++++.++|.++++|++++++... +.-+|
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 345677778899999999999999943 334334488999999999999999999999999999999988776 56689
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
.+.|+.+.+.|+ .+++++ +|.+.++|+.... +.....+.- ..+..+ ..++...+.++++
T Consensus 218 saRvw~~~~~~n--~i~t~g------edctcrvW~~~~~~l~~y~~h~g----------~~iw~~--~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVG------EDCTCRVWGVNGTQLEVYDEHSG----------KGIWKI--AVPIGVIIKVTGG 277 (967)
T ss_pred cceeEEEEeccc--eeEEec------cceEEEEEecccceehhhhhhhh----------cceeEE--EEcCCceEEEeec
Confidence 999999999998 788887 8999999966543 221111111 112222 2345667899999
Q ss_pred CCCcEEEEEc
Q 004298 182 KDGSICFNIF 191 (763)
Q Consensus 182 ~DG~I~lw~~ 191 (763)
.||.+++|++
T Consensus 278 ~Ds~lk~~~l 287 (967)
T KOG0974|consen 278 NDSTLKLWDL 287 (967)
T ss_pred cCcchhhhhh
Confidence 9999999964
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-05 Score=88.00 Aligned_cols=98 Identities=13% Similarity=0.070 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCE-EEEEeCC---CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEE---cCCcEEEEEccCCeE
Q 004298 24 IKIAEWNPEKDL-LAMATED---SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~l-LA~~s~D---g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve~g~~ 95 (763)
+....|+|+|+. ++..+.+ ..|+++++.+.+...+ ...+.+.+..|+|||+.++... .+..|.++|+.+++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 678999999984 6655444 4688888844433333 3445566788999999877654 245688888877764
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+..+........|+|||+.++..+
T Consensus 270 -~~LT~~~~~d~~p~~SPDG~~I~F~S 295 (419)
T PRK04043 270 -TQITNYPGIDVNGNFVEDDKRIVFVS 295 (419)
T ss_pred -EEcccCCCccCccEECCCCCEEEEEE
Confidence 45554444345668999998776654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.7e-06 Score=91.64 Aligned_cols=161 Identities=9% Similarity=0.007 Sum_probs=97.7
Q ss_pred CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 43 SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 43 g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
..|++++.+|.....+. +...+.+.+|+|||+.|+..+. +..|.+||+.+|+.. .+..+.+.+.+..|+|+|+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 36888888776655553 5668999999999999988763 468999999888653 455556678899999999876
Q ss_pred e-ccCCCCCcccCCc--eeecCCCCC-CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc-CCCcEEEEEcCc
Q 004298 119 K-NDFGNIPTYEDRT--SRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGI 193 (763)
Q Consensus 119 ~-s~s~~~~~~~d~~--i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~ 193 (763)
+ +.+ .++. +.+||.... ...+.. +.... ....++++++.|+..+ .+|...+|.++.
T Consensus 261 a~~~~------~~g~~~Iy~~d~~~~~~~~Lt~----~~~~~---------~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 261 VMSLS------QGGNTDIYTMDLRSGTTTRLTD----SPAID---------TSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred EEEEe------cCCCceEEEEECCCCceEEccC----CCCcc---------CceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 5 333 3444 555565542 111111 11100 1123456666666554 556555554331
Q ss_pred --eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 194 --FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 194 --~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
-....+. . ..+.+....|||||+.+++...
T Consensus 322 ~g~~~~~lt----------~--------~~~~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 322 DGSNPRRIS----------F--------GGGRYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred CCCCeEEee----------c--------CCCcccCeEECCCCCEEEEEEc
Confidence 1111110 0 0122445789999999988764
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-06 Score=94.98 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=90.5
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC--eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcC-Cc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDS--KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED-GT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg--~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D-g~--V~lwdve~g~~ 95 (763)
.+..++|+|+|+.|+.. +.+| .|++|++.+..+..+. ....+....|+|||+.|+..+.+ |. |.++|+.+++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 35678999999988865 3344 5888898665555554 33467889999999999887754 44 44456666654
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+..+...+.+..|+|+|+.++..+... ....+.+||..... ..+.. .. . .....+++++
T Consensus 324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~---g~~~I~~~dl~~g~~~~Lt~---~~---~--------~~~p~~SpDG 385 (429)
T PRK03629 324 -QRITWEGSQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGGVQVLTD---TF---L--------DETPSIAPNG 385 (429)
T ss_pred -EEeecCCCCccCEEECCCCCEEEEEEccC---CCceEEEEECCCCCeEEeCC---CC---C--------CCCceECCCC
Confidence 34444445567889999999887654110 12346667765421 11110 00 0 0122355788
Q ss_pred eEEEEEcCCCc
Q 004298 175 SILCSGDKDGS 185 (763)
Q Consensus 175 ~~L~sgs~DG~ 185 (763)
..++.++.+|.
T Consensus 386 ~~i~~~s~~~~ 396 (429)
T PRK03629 386 TMVIYSSSQGM 396 (429)
T ss_pred CEEEEEEcCCC
Confidence 87888777765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.7e-06 Score=92.63 Aligned_cols=111 Identities=10% Similarity=0.166 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
|.+++|+++|.+|.+|+..|.+.+|.+ ++++-+--.-+..|..+.|+||+...++...|+.|.+....+-+...++.+-
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi 333 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI 333 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence 999999999999999999999999999 5544333346789999999999999999999999999987665554444321
Q ss_pred -----------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 103 -----------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 103 -----------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+-.+.+..+|....++-.+ ..+.+.+||..+
T Consensus 334 ~~~~~~~k~~~~~l~t~~~idpr~~~~vln~------~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 334 KPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG------HPGHVQFYDLYT 376 (792)
T ss_pred cCCCccccccccccceeEEEcCCCCceeecC------CCceEEEEeccc
Confidence 23355667777433333333 677777777654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.1e-07 Score=90.99 Aligned_cols=109 Identities=10% Similarity=0.194 Sum_probs=81.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEecccCC
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSLKSHTV 104 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l~~h~~ 104 (763)
++|||+|+++|+++.- .+.|-+.+.-.+..+ .--++|.-|.|+.|.-++ .+.+.|+.|.+|++...+...++....+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 7899999999998865 554444422111111 112568889999988765 4556899999999999998889988889
Q ss_pred ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 105 AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 105 ~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
++..++|+|+|+.+...+ ..+-.+.+|...++
T Consensus 93 gls~~~WSPdgrhiL~ts-----eF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTS-----EFDLRITVWSLNTQ 124 (447)
T ss_pred cceeeeECCCcceEeeee-----cceeEEEEEEeccc
Confidence 999999999997765544 16788999988764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.2e-06 Score=92.90 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=96.2
Q ss_pred CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 43 SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 43 g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
..|++++.+|.....+ .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+|+... +....+.+.+..|+|||+.+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 3577777776654443 356678999999999999887743 459999999887643 33334567789999999877
Q ss_pred ec-cCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE-cCCCcEEEEEcCceee
Q 004298 119 KN-DFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG-DKDGSICFNIFGIFPI 196 (763)
Q Consensus 119 ~s-~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg-s~DG~I~lw~~~~~~i 196 (763)
+. .+ .++...+|............ ..+.... ....++++++.|+.. ..+|...+|.++.-.
T Consensus 255 a~~~~------~~g~~~Iy~~d~~~~~~~~l-t~~~~~~---------~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~- 317 (427)
T PRK02889 255 AVALS------RDGNSQIYTVNADGSGLRRL-TQSSGID---------TEPFFSPDGRSIYFTSDRGGAPQIYRMPASG- 317 (427)
T ss_pred EEEEc------cCCCceEEEEECCCCCcEEC-CCCCCCC---------cCeEEcCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 64 44 56666666432211111100 0010000 112345666655544 456788888643211
Q ss_pred eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 197 GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 197 g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+... ..+... ......+|||||+++++.+.
T Consensus 318 g~~~-------~lt~~g--------~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 318 GAAQ-------RVTFTG--------SYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CceE-------EEecCC--------CCcCceEECCCCCEEEEEEc
Confidence 1110 000000 11235689999999987764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-05 Score=75.91 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE-ec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT-IS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~-~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.++-..|..+-+..++.|+.++-|++...++.. +. |.+.|.++.-+.....+.+|+.||++|+||.++++.+..+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 58999999998888888899999999995555544 43 77889999987766789999999999999999999988875
Q ss_pred ccC----------CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 101 SHT----------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 101 ~h~----------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
... ..|-+++- +...++.|+ ...+.+|.++..-+...-...++... ..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~--~edWlvCGg-------Gp~lslwhLrsse~t~vfpipa~v~~------------v~F 254 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-------GPKLSLWHLRSSESTCVFPIPARVHL------------VDF 254 (325)
T ss_pred cccChhhcCcccCceeEEEec--cCceEEecC-------CCceeEEeccCCCceEEEecccceeE------------eee
Confidence 422 23444443 345666664 56788888775211110000011000 111
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKI 199 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~ 199 (763)
.+ +.+++++....|.-|.++...-..+
T Consensus 255 ~~--d~vl~~G~g~~v~~~~l~Gvl~a~i 281 (325)
T KOG0649|consen 255 VD--DCVLIGGEGNHVQSYTLNGVLQANI 281 (325)
T ss_pred ec--ceEEEeccccceeeeeeccEEEEec
Confidence 12 3567777788888887665444444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.5e-06 Score=82.95 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe
Q 004298 21 ASQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI 58 (763)
Q Consensus 21 ~~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~ 58 (763)
++++.+++|||+|+ +|.+...+-.|.||.++.++..-+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 35689999999995 555667788999999976654444
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=93.51 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEec----CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc-C---
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTIS----PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE-N--- 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~----~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve-~--- 92 (763)
-..+.|+|=.+.++++.+...|.||+....+. -.+. +...|+.+.+-. |..++.+|+.||.|+||+-- +
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 56788999999999998888999999944444 3444 346799998866 66799999999999999732 2
Q ss_pred -CeEEEEecc---c----CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccc
Q 004298 93 -GKLLRSLKS---H----TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 93 -g~~~~~l~~---h----~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~ 162 (763)
.+.+..+.+ + .+.-.-+.|.....++.+++ +-+.|++||..... ..++.. .+..
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG------d~r~IRIWDa~~E~~~~diP~~----------s~t~ 1210 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG------DVRSIRIWDAHKEQVVADIPYG----------SSTL 1210 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC------CeeEEEEEecccceeEeecccC----------CCcc
Confidence 234433221 1 12224467877665555555 68999999987631 122211 1111
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+..++. ....+++++.|..||.|++|+.++-
T Consensus 1211 vTaLS~-~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1211 VTALSA-DLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred ceeecc-cccCCceEEEeecCCceEEeecccC
Confidence 222222 2345799999999999999986654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-07 Score=95.96 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=127.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+-..|.++.|-.+.+++|++ ....++||+-+|..+..++....|..+.|-|.--+|++++..|.++--|+.+|+.+..
T Consensus 168 ~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~ 246 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS 246 (545)
T ss_pred ehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHH
Confidence 333457788887777777765 5778999999999999999888999999999988999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+....+.+..|.-+|-+..+-.|. ..|++.+|....+ +-++..+..+.. ..+.++++.+
T Consensus 247 ~~t~~G~~~vm~qNP~NaVih~Gh------snGtVSlWSP~skePLvKiLcH~g~V~-------------siAv~~~G~Y 307 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPYNAVIHLGH------SNGTVSLWSPNSKEPLVKILCHRGPVS-------------SIAVDRGGRY 307 (545)
T ss_pred HHccCCccchhhcCCccceEEEcC------CCceEEecCCCCcchHHHHHhcCCCcc-------------eEEECCCCcE
Confidence 988788999999999888777776 7999999987653 222222222222 2236688999
Q ss_pred EEEEcCCCcEEEEEcCcee
Q 004298 177 LCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ 195 (763)
|++.+.|..++|||++.|.
T Consensus 308 MaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 308 MATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred EeecccccceeEeeecccc
Confidence 9999999999999988874
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-06 Score=91.30 Aligned_cols=116 Identities=16% Similarity=0.283 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMA--TEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~--s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~ 96 (763)
++|+++.|+|++.-++++ -.=..+.||++++..++.+..| +=+++-|+|.|++|+.++- -|.|-+||+.+.+.+
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg-pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG-PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC-CccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 349999999999877764 4456899999999999998754 3467899999999998884 589999999999998
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++.. ..-+-+.|+|||.++.++......-.|+.+++|+...
T Consensus 350 ~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 350 AKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 88865 3456689999999998876443444588999998765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.5e-06 Score=90.27 Aligned_cols=150 Identities=19% Similarity=0.318 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecC--------C----CcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP--------G----KSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--------~----~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
+.++++..||-..+||+|+.+|.|-.|+. ..+++..+.- + ..|+++.|+.||-.+++|..+|.|.||
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY 255 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence 45999999999999999999999999998 5555555531 1 249999999999999999999999999
Q ss_pred EccCCeEEEEec-ccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLK-SHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~-~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
|+++.+.+..-. +...+|..+.|.+.+ ..+++. +.+.+++||.....+-... +....++.
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-------Dk~~~kiWd~~~Gk~~asi----------Ept~~lND 318 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-------DKRILKIWDECTGKPMASI----------EPTSDLND 318 (703)
T ss_pred EcccCCceeecccCCccceeeecccccCCCceEEec-------chHHhhhcccccCCceeec----------cccCCcCc
Confidence 999887765432 234689999998763 445555 5788999997652111000 00111222
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEE
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
+ |+-++.-++.++-.++.++.|.
T Consensus 319 ~--C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 319 F--CFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred e--eeecCCceEEEecCCCcceeEE
Confidence 2 2334555777888887777654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=84.58 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=106.9
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCeEEEEEccC-ceEEEec-----------CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNPE-K--DLLAMATEDSKILLHRFNW-QRLWTIS-----------PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP~-~--~lLA~~s~Dg~V~v~~l~~-~~v~~~~-----------~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
+-|.+..|.-+ + -+++.|-++|.|.+|+++. .++..++ |.++|.++.+.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 44777775432 2 3566688899999999944 3433332 678899999998655668888888898
Q ss_pred EEEccC--CeEEE--EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC--CCCCCCCcccCCcccccCCc
Q 004298 87 LHDVEN--GKLLR--SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP--RIPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 87 lwdve~--g~~~~--~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~--~~~~l~~~~s~~~~~~~~~~ 160 (763)
.|++.. |.+.. .+...+-.|..+..-||++.+++++ +|+.+|+|..++ ++..+..|..+...
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~------ 298 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNA------ 298 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeE------
Confidence 998863 43321 2223345788899999999999999 999999976654 34445444433222
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
.+++++-++|+.++.|++|.+|.
T Consensus 299 -------vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 299 -------VAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred -------EEeCCCCchhhhccCCceEEeee
Confidence 34567778999999999999996
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.5e-06 Score=94.21 Aligned_cols=153 Identities=16% Similarity=0.081 Sum_probs=110.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEecCCCcE-----EEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTISPGKSV-----TSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~~~~~V-----~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++.|....+.-+..++++++.++.+.+|+.+... +..+.++..+ .-+..+++.-++++|+.-|.|.+|+...-
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 34455555566677889999999999999995544 4455555432 23456677779999999999999997622
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+.-..+.+|.+.|..+.|+.+|+++++.| +|+++|+|++...- .+..+.-+|+.-+ ...++.++
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~S------dDRsiRlW~i~s~~-~~~~~~fgHsaRv---------w~~~~~~n 229 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVS------DDRSIRLWPIDSRE-VLGCTGFGHSARV---------WACCFLPN 229 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEe------cCcceeeeeccccc-ccCccccccccee---------EEEEeccc
Confidence 22236889999999999999999999999 99999999987631 1111222333322 23344455
Q ss_pred eeEEEEEcCCCcEEEEE
Q 004298 174 FSILCSGDKDGSICFNI 190 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~ 190 (763)
.+++++.|.+.++|.
T Consensus 230 --~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWG 244 (967)
T ss_pred --eeEEeccceEEEEEe
Confidence 899999999999994
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-05 Score=91.26 Aligned_cols=104 Identities=25% Similarity=0.418 Sum_probs=76.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----------------------CC---C---------
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----------------------PG---K--------- 62 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----------------------~~---~--------- 62 (763)
..+.++|.+++||||+.++|.++.+++|.+..-++..+.... || +
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 344567999999999999999999999988776655443321 11 0
Q ss_pred --------------cEEEEEEccCCCEEEEEEc---C---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 63 --------------SVTSLCWRPDGKAIAVGLE---D---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 63 --------------~V~~l~wspDG~~Lasg~~---D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.-..|+|+.||+++|+.+- + ..+|+|+-+ |+...+-..-.+--.+++|.|.|.++++..
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred CCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence 1246899999999999884 3 478999955 776554433334456789999999998864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=83.89 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=102.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC------CeEEEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN------GKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~------g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
|.++|++|.|+.+|++||+|+.|..+++|.++. .+.+.... .|.+.|.|+.|...++++.+|+ .+++
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~~ 128 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWGT 128 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------Ccce
Confidence 678999999999999999999999999999863 34444432 3568999999999999999998 8999
Q ss_pred eeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccC
Q 004298 133 SRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNA 211 (763)
Q Consensus 133 i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~ 211 (763)
+..-|+.++...-...-....+- + .....+|..+++++.+.+|.|.+|+..-.+ -+..-...
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~-------V--Y~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-------- 191 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGD-------V--YHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-------- 191 (609)
T ss_pred eEeeecccceeeeeecccCcccc-------e--eecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec--------
Confidence 99988876421110000000001 1 112334567899999999999999866543 12111100
Q ss_pred CCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 212 DEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 212 ~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.. ....+++.|.|.--.|+++..
T Consensus 192 -N~------~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 192 -NS------GKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred -CC------CccceeeeecCCCceeEEecc
Confidence 00 023557788888777776643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=88.72 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCEEEE-EeCCC--eEEEEEccCceEEEecCC-CcEEEEEEccCCCEEEEEEc-CCc--EEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAM-ATEDS--KILLHRFNWQRLWTISPG-KSVTSLCWRPDGKAIAVGLE-DGT--ITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~-~s~Dg--~V~v~~l~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~-Dg~--V~lwdve~g~~ 95 (763)
....++|+|+|+.++. .+.+| .|++|++.+..+..+... ......+|+|||+.|+.++. +|. |.++++.+++.
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3557899999998764 44555 588999866656555433 34567899999999988774 444 66667766664
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+..+.......+|+|+|+.++..+.. .....+.+|+...
T Consensus 329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~---~~~~~I~v~d~~~ 369 (433)
T PRK04922 329 E-RLTFQGNYNARASVSPDGKKIAMVHGS---GGQYRIAVMDLST 369 (433)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEECC---CCceeEEEEECCC
Confidence 3 333333445678999999988765311 0123578888754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=82.40 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=108.5
Q ss_pred CCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEc-cCceE----EEecCCCcEEEEEEccCCCEEEEEE----cCCcEE
Q 004298 18 KPVASQIKIAEWNP--EKDLLAMATEDSKILLHRF-NWQRL----WTISPGKSVTSLCWRPDGKAIAVGL----EDGTIT 86 (763)
Q Consensus 18 k~~~~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~~~v----~~~~~~~~V~~l~wspDG~~Lasg~----~Dg~V~ 86 (763)
|..|..+..++|.. ..+.+.+++.||+|++|++ ..+++ |+-.++..-.|++-+-.++.+++|. .|-.|.
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~ 146 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV 146 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence 34455677777765 5688999999999999999 32332 3333556778888887888999987 577899
Q ss_pred EEEccCCeE-EEE-ecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccc
Q 004298 87 LHDVENGKL-LRS-LKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 87 lwdve~g~~-~~~-l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~ 163 (763)
+||++..+. ++. ...|...|+++.|+|.. ..+++|| -||-+.+||+...-.. ... ...+ ....++
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS------vDGLvnlfD~~~d~Ee-DaL---~~vi--N~~sSI 214 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS------VDGLVNLFDTKKDNEE-DAL---LHVI--NHGSSI 214 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec------ccceEEeeecCCCcch-hhH---HHhh--ccccee
Confidence 999997655 555 45799999999999976 5788898 8999999998753110 000 0000 011223
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
-.+.|.. +..+.+.+-+..++..+|..
T Consensus 215 ~~igw~~-~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 215 HLIGWLS-KKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred eeeeeec-CCcceEEEEEccCceeEEEc
Confidence 3334432 33334555677788888863
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-05 Score=82.34 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=117.4
Q ss_pred CeEEEEEcCCC-CEEEEEeCC--CeEEEEEc-cCceEEEecC--C--------CcEEEEEEccC--CCEEEEEEcCCcEE
Q 004298 23 QIKIAEWNPEK-DLLAMATED--SKILLHRF-NWQRLWTISP--G--------KSVTSLCWRPD--GKAIAVGLEDGTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~D--g~V~v~~l-~~~~v~~~~~--~--------~~V~~l~wspD--G~~Lasg~~Dg~V~ 86 (763)
++..+.=+|.. ..+|+|+.. ..+.+|++ ..+++|..++ + -+++++.|-|. ...||++..-+.|+
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 46677777765 455668887 78999999 6789998862 2 24788999997 88999999999999
Q ss_pred EEEccCC-eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-ccCCcccccCCccccc
Q 004298 87 LHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-VSGDTGFTDDSEDSFR 164 (763)
Q Consensus 87 lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-~s~~~~~~~~~~~~~~ 164 (763)
+||...+ +++.++..-+.+|+++.-.|.+.++.+|. .-+.+..||.+.. .+.+. ..+.++.+ .
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn------~~g~l~~FD~r~~--kl~g~~~kg~tGsi-------r 294 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN------TKGQLAKFDLRGG--KLLGCGLKGITGSI-------R 294 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEEEEec------ccchhheecccCc--eeeccccCCccCCc-------c
Confidence 9999865 56778887789999999999999999987 6788888998864 22221 22222222 2
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+ ..++...++++++-|..++|++...
T Consensus 295 si--h~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 295 SI--HCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eE--EEcCCCceEEeeccceeEEEeeccc
Confidence 22 3457778999999999999998655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=92.79 Aligned_cols=173 Identities=9% Similarity=-0.033 Sum_probs=108.2
Q ss_pred EEccCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccC--Ce-----EEEEecccCCceeEEEeecCCCce
Q 004298 48 HRFNWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVEN--GK-----LLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 48 ~~l~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~--g~-----~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
|+..|..|..+. |...|..++-++ ++.+|++|+.||+|++|+... |+ ...++....+.+.++...+++..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 666666666665 666777888776 559999999999999999762 21 222333346789999999999999
Q ss_pred eccCCCCCcccCCceeecCCCCC-CCCCCCcccCCcccccCCccccccee-cccCCCeeEEEEEcCCCcEEEEEcCceee
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTDDSEDSFRELA-NSSHQRFSILCSGDKDGSICFNIFGIFPI 196 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~L~sgs~DG~I~lw~~~~~~i 196 (763)
+.++ .||.+++..+... ........ ...........+-.+. +.......+++.++..+.|..|+.++...
T Consensus 1114 Av~t------~DG~v~~~~id~~~~~~~~~~~--~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1114 AVST------KDGSVRVLRIDHYNVSKRVATQ--VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred EEEc------CCCeEEEEEccccccccceeee--eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 8887 8999999877642 11110000 0000000000111111 11112224888999999999999776432
Q ss_pred eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 197 GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 197 g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.... ...+-+|.|++++.+|-++.++++++.+
T Consensus 1186 ~w~l---------------k~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1186 AWRL---------------KNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred HHhh---------------hcCccccceeEEEecCCceEEEEecCCc
Confidence 2210 0112236789999999999998887765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.8e-06 Score=99.58 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=130.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.++.=+|...+.++|+.||.|++|.. .++.+.... ...+|+.+.|+.+|..+.++..||.+.+|.+. .+.....
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence 3888999999999999999999999998 777776665 33689999999999999999999999999987 6777778
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
+.|+...+...|-. ..+++.+. ..+++.+.+||..-+.....-+ ..|..-+ .....-|+..+|++
T Consensus 2289 qchnk~~~Df~Fi~--s~~~tag~---s~d~~n~~lwDtl~~~~~s~v~-~~H~~ga---------T~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG--SLLATAGR---SSDNRNVCLWDTLLPPMNSLVH-TCHDGGA---------TVLAYAPKHQLLIS 2353 (2439)
T ss_pred ccCCccccceeeee--hhhhcccc---CCCCCcccchhcccCcccceee-eecCCCc---------eEEEEcCcceEEEe
Confidence 88988888888875 44555431 2378999999976431111111 1111111 12234577889999
Q ss_pred EcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeec
Q 004298 180 GDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
|+.+|.|++|+...- .++.++.......+.+++..|.+++|.
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEE
Confidence 999999999986542 233443322222344566667777776
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0001 Score=82.66 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=63.4
Q ss_pred eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|.+++.++.....+. ++..+.+.+|+|||+.|+.+..+ ..|++||+.+++... +..+...+.++.|+|+++.++
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEE
Confidence 5777777655444443 55568899999999999988744 479999999886543 334456677899999998665
Q ss_pred c-cCCCCCcccCCceeecCCCC
Q 004298 120 N-DFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 120 s-~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+. ..+..+.+|+...
T Consensus 250 ~~~~~----~~~~~i~~~d~~~ 267 (417)
T TIGR02800 250 VSLSK----DGNPDIYVMDLDG 267 (417)
T ss_pred EEECC----CCCccEEEEECCC
Confidence 3 320 0233566777654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=81.17 Aligned_cols=204 Identities=13% Similarity=0.155 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce--EEEec-----C------------CCcEEEEEEccCCC--EEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR--LWTIS-----P------------GKSVTSLCWRPDGK--AIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~--v~~~~-----~------------~~~V~~l~wspDG~--~Lasg~ 80 (763)
+-|.++.|+-+|++||+|..+|.|.+|.-+... .+.+. | ..+|..++|.++|. .+....
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 348899999999999999999999988762111 22221 2 24689999999765 677888
Q ss_pred cCCcEEEEEccCCeEEE---------------Ee---------------------cccCCceeEEEeecCCCceeccCCC
Q 004298 81 EDGTITLHDVENGKLLR---------------SL---------------------KSHTVAVVCLNWEEDAQPSKNDFGN 124 (763)
Q Consensus 81 ~Dg~V~lwdve~g~~~~---------------~l---------------------~~h~~~V~~l~ws~~~~~l~s~s~~ 124 (763)
.|.+|++|-+....... ++ .+|.-.|.+|+++.|+..+.++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA--- 182 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA--- 182 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec---
Confidence 99999999876321110 00 1477789999999999988887
Q ss_pred CCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC-eeEEEEEcCCCcEEEEEcCceeeeee--ee
Q 004298 125 IPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR-FSILCSGDKDGSICFNIFGIFPIGKI--NI 201 (763)
Q Consensus 125 ~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~ig~~--~i 201 (763)
+|=.|.+|++.-.-.... ...-...-..+...-+.. ..++|. -++++-.++.|+|++.+.+..-...- .+
T Consensus 183 ----DdLRINLWnlei~d~sFn-IVDIKP~nmEeLteVITs--aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 183 ----DDLRINLWNLEIIDQSFN-IVDIKPANMEELTEVITS--AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ----cceeeeeccccccCCcee-EEEccccCHHHHHHHHhh--hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 588889997653111000 000000000000111111 123332 36888889999999998663211110 00
Q ss_pred cccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 202 HKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 202 ~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
...+......+ -+.---.+|.++.||++|++++.
T Consensus 256 fEepedp~~rs---ffseiIsSISDvKFs~sGryils 289 (433)
T KOG1354|consen 256 FEEPEDPSSRS---FFSEIISSISDVKFSHSGRYILS 289 (433)
T ss_pred hccccCCcchh---hHHHHhhhhhceEEccCCcEEEE
Confidence 01010100000 00001157899999999999875
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-06 Score=97.52 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
-..|.|..|...|.++++|++|..|+||.++++.++...++|.+.|+.++.+.++..++++| .|..|++|....
T Consensus 190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS------~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS------NDKVIRVWRLPD 263 (1113)
T ss_pred hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc------cCceEEEEecCC
Confidence 34599999999999999999999999999999999999999999999999999999999998 899999998776
Q ss_pred CCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 141 RIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 141 ~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
..+ .....+|++.++ .+ .++|.. +.+.||++++|+++
T Consensus 264 ~~p--vsvLrghtgavt-------ai--afsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 264 GAP--VSVLRGHTGAVT-------AI--AFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred Cch--HHHHhcccccee-------ee--ccCccc----cCCCCCceEecccc
Confidence 321 122345555441 12 233332 66789999999876
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0001 Score=86.98 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=97.4
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEc---cCc-eEE----Eec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-
Q 004298 24 IKIAEWNP-EKDLLAMATEDSKILLHRF---NWQ-RLW----TIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN- 92 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~V~v~~l---~~~-~v~----~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~- 92 (763)
|..++.++ ++.++++|+.||+|++|++ .+. ... +.. .+.++.++..-+.|..+|+|+.||.|++.+++-
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 55666555 5699999999999999998 232 111 222 567899999999999999999999999999874
Q ss_pred -Ce-----EEEEeccc-CCceeEE-EeecCC-C-ceeccCCCCCcccCCceeecCCCCC--CCCCCCcccCCcccccCCc
Q 004298 93 -GK-----LLRSLKSH-TVAVVCL-NWEEDA-Q-PSKNDFGNIPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 93 -g~-----~~~~l~~h-~~~V~~l-~ws~~~-~-~l~s~s~~~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~ 160 (763)
++ ..+....+ .+.+.+| ++.... . .++.+. ..+.+..||.+.. ...+.. ....+.+
T Consensus 1131 ~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T------~~~~iv~~D~r~~~~~w~lk~--~~~hG~v---- 1198 (1431)
T KOG1240|consen 1131 NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT------DLSRIVSWDTRMRHDAWRLKN--QLRHGLV---- 1198 (1431)
T ss_pred ccccceeeeeecccccCCCceEEeecccccccceeEEEEE------eccceEEecchhhhhHHhhhc--Cccccce----
Confidence 21 22222222 2333333 343222 2 233333 5778889998763 111111 0111111
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+.+.++.++.+++|+..|.+-+||.+.
T Consensus 1199 -----TSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1199 -----TSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred -----eEEEecCCceEEEEecCCceEEEEEeec
Confidence 2234567778999999999999999764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00019 Score=78.88 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCEEEE-EeCCCeEEEEEc-cCceEEEecCCCcE-EEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEE
Q 004298 33 KDLLAM-ATEDSKILLHRF-NWQRLWTISPGKSV-TSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCL 109 (763)
Q Consensus 33 ~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~~~V-~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l 109 (763)
++++++ -..+++|.|.+. +.+.+..+..+..+ ..+.++|||+++.+++.||.|.++|+.+++.+.+++.. ....++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence 456654 456799999999 56677888766555 45789999999999999999999999999999999764 456889
Q ss_pred EeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 110 NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 110 ~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++++||++++++. +.++.+.++|..+
T Consensus 84 ~~s~DG~~~~v~n-----~~~~~v~v~D~~t 109 (369)
T PF02239_consen 84 AVSPDGKYVYVAN-----YEPGTVSVIDAET 109 (369)
T ss_dssp EE--TTTEEEEEE-----EETTEEEEEETTT
T ss_pred EEcCCCCEEEEEe-----cCCCceeEecccc
Confidence 9999999998775 5789999998765
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=82.28 Aligned_cols=115 Identities=20% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 20 VASQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 20 ~~~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+|-+++.+.|-|. ...+|+++.-++|++|+..-| ++..+. -...++++..-|+|++|.+|..-|.+..+|.+.++
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 3455778889887 789999999999999999433 456665 34678999999999999999999999999999999
Q ss_pred EEEE-ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRS-LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~-l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.... +++..+.|++|..+|.++++++++ -|+.+|++|..+
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~kt 321 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKT 321 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeeccc
Confidence 8876 888889999999999999999999 899999999876
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0001 Score=81.21 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=91.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
.++.|.++.|+.+-..|-+++.|+.+..|.....++..+. ....+.+++.+|||+.+++|+ +.|++||+++++.+.
T Consensus 101 h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 101 HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE
Confidence 3567999999999999999999999999999665555543 235689999999999999886 789999999999999
Q ss_pred EecccCCceeEEEeecC-----CCceeccCCCCCcccCCceeecCCC
Q 004298 98 SLKSHTVAVVCLNWEED-----AQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~-----~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+|.+|.++|.++.|..+ |.++.++.. ..+-+.+|-..
T Consensus 179 ~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~ 220 (541)
T KOG4547|consen 179 TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVE 220 (541)
T ss_pred EecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEE
Confidence 99999999999999877 555554421 35556666433
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00039 Score=84.89 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=123.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc----cCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF----NWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l----~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.++.+-++.+-+..+..+|.|.+++. ....+-.+ .-...|.|++||||+..||....+|++.+++ .+.+.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEE
Confidence 57999999999999999999999988843 22222111 1235699999999999999999999998875 222222
Q ss_pred EEec------------------------c------------------------cCCceeEEEeecCCCceeccCCCCCcc
Q 004298 97 RSLK------------------------S------------------------HTVAVVCLNWEEDAQPSKNDFGNIPTY 128 (763)
Q Consensus 97 ~~l~------------------------~------------------------h~~~V~~l~ws~~~~~l~s~s~~~~~~ 128 (763)
.... | +...-..|+|-.||.+++..+-.....
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 2111 0 122345788999999988765211111
Q ss_pred cCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcC---CCcEEEEEcCceeeeeeeecccc
Q 004298 129 EDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDK---DGSICFNIFGIFPIGKINIHKFH 205 (763)
Q Consensus 129 ~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~---DG~I~lw~~~~~~ig~~~i~~~~ 205 (763)
.-+.+|+|+-...+.. ......+.. -..++.|.|+++++... .-.|.+|.-....-|.+.+.-.+
T Consensus 235 ~~R~iRVy~ReG~L~s---tSE~v~gLe---------~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 235 SRRVIRVYSREGELQS---TSEPVDGLE---------GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDP 302 (928)
T ss_pred ceeEEEEECCCceEEe---ccccCCCcc---------CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCC
Confidence 2478999987753221 111111111 12245678888888764 34455665455566666543200
Q ss_pred cccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 206 VAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
. ...|..++|++|+..|++...+.
T Consensus 303 -------~-------~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 303 -------E-------EEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred -------C-------CceeeEEEECCCCCEEEEEecCC
Confidence 0 12467899999999999977543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0017 Score=71.05 Aligned_cols=203 Identities=16% Similarity=0.151 Sum_probs=114.7
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEccC-ceEEE----ec-----------CCCcEEEEEEccCCCEEEEEE-cCCc
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRFNW-QRLWT----IS-----------PGKSVTSLCWRPDGKAIAVGL-EDGT 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~~-~~v~~----~~-----------~~~~V~~l~wspDG~~Lasg~-~Dg~ 84 (763)
....++.+|++++++++.. +|.|.+++++. ..+-. +. .+....++.|+|||+++++.. ....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 3567899999999998874 78999999943 22221 11 234578999999999888876 5568
Q ss_pred EEEEEccCCe--EE--EEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc--ccCC-cccc
Q 004298 85 ITLHDVENGK--LL--RSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL--VSGD-TGFT 156 (763)
Q Consensus 85 V~lwdve~g~--~~--~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~--~s~~-~~~~ 156 (763)
|.+|++.... .. ..+. .......++.|+|+++++.... ..++++.+++..+....+... .... ..+.
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-----ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-----CCCCcEEEEeecccCCceeEEEEeeecccccc
Confidence 9999997654 32 2232 2246789999999998765443 146667776555211110000 0000 0000
Q ss_pred cCCcccccceecccCCCeeEEEE-EcCCCcEEEEEcCc----e-eeeeeeecccccccccCCCCCceeeeccceeeEEec
Q 004298 157 DDSEDSFRELANSSHQRFSILCS-GDKDGSICFNIFGI----F-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS 230 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~s-gs~DG~I~lw~~~~----~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S 230 (763)
.......+ ..++++++|.+ ....+.|.++..+. . .++.++ +++ ..-..++++
T Consensus 243 --~~~~~~~i--~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~---------~~G---------~~Pr~~~~s 300 (345)
T PF10282_consen 243 --GENAPAEI--AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP---------TGG---------KFPRHFAFS 300 (345)
T ss_dssp --SSSSEEEE--EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE---------ESS---------SSEEEEEE-
T ss_pred --ccCCceeE--EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe---------CCC---------CCccEEEEe
Confidence 00011112 23455655544 44667788887632 1 122221 111 114578999
Q ss_pred CCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 231 KDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 231 pDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
|||++|+++..++ ..+.++.+|
T Consensus 301 ~~g~~l~Va~~~s-----------~~v~vf~~d 322 (345)
T PF10282_consen 301 PDGRYLYVANQDS-----------NTVSVFDID 322 (345)
T ss_dssp TTSSEEEEEETTT-----------TEEEEEEEE
T ss_pred CCCCEEEEEecCC-----------CeEEEEEEe
Confidence 9999999987654 356666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0003 Score=79.41 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=62.5
Q ss_pred eEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|.+++.+|.....+ .++..+....|+|||+.|+..+.+ ..|.+|++.+|+... +....+.+....|+|+|+.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 477777777655554 456678999999999999877643 368999998886543 333344566789999998776
Q ss_pred c-cCCCCCcccCCceeecCCCC
Q 004298 120 N-DFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 120 s-~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+.+ .+..+.++|...
T Consensus 259 ~~~~~~----g~~~Iy~~d~~~ 276 (430)
T PRK00178 259 FVLSKD----GNPEIYVMDLAS 276 (430)
T ss_pred EEEccC----CCceEEEEECCC
Confidence 3 3200 123466667654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00028 Score=77.57 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=77.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEEeccc-
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRSLKSH- 102 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~l~~h- 102 (763)
.+.++||++++.+++.||.|.++++ +++.+..+..|....+++++|||+++++++ .++.+.++|.++.+.++.+...
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 4679999999999999999999999 788888999999999999999999998876 7999999999999999887643
Q ss_pred ------CCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCC
Q 004298 103 ------TVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 103 ------~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~ 140 (763)
...+..+.-++....++ +.- +.+.+-+.|...
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lk------d~~~I~vVdy~d 159 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLK------DTGEIWVVDYSD 159 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEET------TTTEEEEEETTT
T ss_pred ccccccCCCceeEEecCCCCEEEEEEc------cCCeEEEEEecc
Confidence 24677777778777443 332 335555555443
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4e-05 Score=80.74 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc--cC--ceEEEecC-CCcEEEEEEccCCCEEEEEE---cCCcEEEEEccCCeE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF--NW--QRLWTISP-GKSVTSLCWRPDGKAIAVGL---EDGTITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~--~~v~~~~~-~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve~g~~ 95 (763)
+..+..+|.+.++|++..+....++.. +. -+.+.... ...-+++.|-.+.....++- +...+.+|.+..+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 556778999999999998888666665 32 23333321 23345566665555555554 445556666655554
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.- +-+|-+.++.++|+||++++.++. .|..||+-..... ....+-..||+.|+. .+. . .+..
T Consensus 145 ~~-~lGhvSml~dVavS~D~~~IitaD------RDEkIRvs~ypa~-f~IesfclGH~eFVS-------~is--l-~~~~ 206 (390)
T KOG3914|consen 145 EP-ILGHVSMLLDVAVSPDDQFIITAD------RDEKIRVSRYPAT-FVIESFCLGHKEFVS-------TIS--L-TDNY 206 (390)
T ss_pred ch-hhhhhhhhheeeecCCCCEEEEec------CCceEEEEecCcc-cchhhhccccHhhee-------eee--e-ccCc
Confidence 43 348999999999999999999997 8999988543321 122233346666661 121 1 2223
Q ss_pred EEEEEcCCCcEEEEEcCce
Q 004298 176 ILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~ 194 (763)
.|++|+.|+++++|++...
T Consensus 207 ~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred eeeecCCCCcEEEEecccC
Confidence 5899999999999997664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-05 Score=84.10 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=67.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
|+++.|.+++++|+.+.++.|+.||+|.+|+.+.+.....+..-.++.++|+|+|.++++|+.-|.+.+||+.-+.+...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 66677999999999999999999999999999655444444555678999999999999999999999999875544433
Q ss_pred e
Q 004298 99 L 99 (763)
Q Consensus 99 l 99 (763)
+
T Consensus 337 L 337 (545)
T PF11768_consen 337 L 337 (545)
T ss_pred e
Confidence 3
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0018 Score=70.87 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCEEEEEeC----CCeEEEEEccCc--eE---EEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATE----DSKILLHRFNWQ--RL---WTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~----Dg~V~v~~l~~~--~v---~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~ 92 (763)
...++++|++++|.++.. ++.|..|+++.. .+ -... .+.....++.+|||++|+++. .+|.|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 567899999999888776 478999999442 33 2333 566777899999999998887 799999999976
Q ss_pred -CeEEEE---ec----------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 93 -GKLLRS---LK----------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 93 -g~~~~~---l~----------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
|.+... +. .......++.|+|+++++.... .....|.+|+.......+... ......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~----~~~~~~ 189 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-----LGADRVYVYDIDDDTGKLTPV----DSIKVP 189 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-----TTTTEEEEEEE-TTS-TEEEE----EEEECS
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCceEEEe----eccccc
Confidence 554433 21 1124678999999999776643 134567777665432111100 000000
Q ss_pred CcccccceecccCCCeeEE-EEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 159 SEDSFRELANSSHQRFSIL-CSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
....-..+ .++++++++ ++.-.+++|.++.++.. .|.+...+.....+. +..+. .....+.+||||++|+
T Consensus 190 ~G~GPRh~--~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~-~~~~~-----~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 190 PGSGPRHL--AFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPE-GFTGE-----NAPAEIAISPDGRFLY 260 (345)
T ss_dssp TTSSEEEE--EE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCET-TSCSS-----SSEEEEEE-TTSSEEE
T ss_pred cCCCCcEE--EEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccc-ccccc-----CCceeEEEecCCCEEE
Confidence 00111112 244555444 55567888998876610 111111100000000 00000 1345789999999999
Q ss_pred EEeec
Q 004298 238 VLCSG 242 (763)
Q Consensus 238 v~~~d 242 (763)
++..+
T Consensus 261 vsnr~ 265 (345)
T PF10282_consen 261 VSNRG 265 (345)
T ss_dssp EEECT
T ss_pred EEecc
Confidence 98664
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.7e-05 Score=56.58 Aligned_cols=36 Identities=39% Similarity=0.700 Sum_probs=31.7
Q ss_pred eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 54 RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 54 ~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.+..+. |...|++++|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 445554 778999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0022 Score=67.23 Aligned_cols=199 Identities=15% Similarity=0.109 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCeEEEEEccC--ceEEEec----CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATE---DSKILLHRFNW--QRLWTIS----PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~~--~~v~~~~----~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve 91 (763)
+.++-++|+|+++.|-++.. +|.|..|+++. .++-.++ .+...+.++.+++|++++++. .-|.|.++-+.
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 34788999999987777654 47799999854 4555544 455668899999999998886 67899999986
Q ss_pred C-CeEEEE--ecccCCc----------eeEEEeecCCCceeccCCCCCcccCCceeecCCCCC-CCCCCCcccCCccccc
Q 004298 92 N-GKLLRS--LKSHTVA----------VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR-IPQMPGLVSGDTGFTD 157 (763)
Q Consensus 92 ~-g~~~~~--l~~h~~~----------V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-~~~l~~~~s~~~~~~~ 157 (763)
+ |.+... .-.|.+. +.+..+.|+++++++.. .....+.+|+.... +.+.... .+
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-----LG~Dri~~y~~~dg~L~~~~~~------~v- 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-----LGTDRIFLYDLDDGKLTPADPA------EV- 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-----cCCceEEEEEcccCcccccccc------cc-
Confidence 4 554332 2234443 88899999999888764 12334555554321 1111000 00
Q ss_pred CCcccccceecccCCCeeEEEEEc-CCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEE
Q 004298 158 DSEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHL 236 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~L 236 (763)
.....- -...+++++++..+.. -+++|-+|.++.. .|++..-+.....+. +-.+ +.....+.+|+||++|
T Consensus 188 ~~G~GP--RHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~-dF~g-----~~~~aaIhis~dGrFL 258 (346)
T COG2706 188 KPGAGP--RHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPE-DFTG-----TNWAAAIHISPDGRFL 258 (346)
T ss_pred CCCCCc--ceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcc-ccCC-----CCceeEEEECCCCCEE
Confidence 000011 1123556666554444 5899999988765 344332211111110 0000 0124467789999999
Q ss_pred EEEee
Q 004298 237 TVLCS 241 (763)
Q Consensus 237 lv~~~ 241 (763)
+++-.
T Consensus 259 YasNR 263 (346)
T COG2706 259 YASNR 263 (346)
T ss_pred EEecC
Confidence 88643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0003 Score=77.15 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=105.5
Q ss_pred EEEEcCCCC-EEEEEe--CCC---------eEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEE--cCCcEEEEEc
Q 004298 26 IAEWNPEKD-LLAMAT--EDS---------KILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGL--EDGTITLHDV 90 (763)
Q Consensus 26 ~l~~sP~~~-lLA~~s--~Dg---------~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdv 90 (763)
.+.|++-|. +|+.++ .|. ++++..++|. .+..+...++|.++.|+|+|+-+++.+ .--++.|+|.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 489999875 333332 233 6777777654 345556678999999999999887755 6788999997
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
+ |+.+..+. +++-+++-|+|.|++++-++.+ .-.|.+.+||.... ..+....... ...+.+
T Consensus 302 r-~~~v~df~--egpRN~~~fnp~g~ii~lAGFG---NL~G~mEvwDv~n~-K~i~~~~a~~------------tt~~eW 362 (566)
T KOG2315|consen 302 R-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFG---NLPGDMEVWDVPNR-KLIAKFKAAN------------TTVFEW 362 (566)
T ss_pred C-CCEeEeCC--CCCccceEECCCCCEEEEeecC---CCCCceEEEeccch-hhccccccCC------------ceEEEE
Confidence 6 88887774 5788999999999988776622 25789999998862 1111111111 123456
Q ss_pred CCCeeEEEEEc------CCCcEEEEEcCceee
Q 004298 171 HQRFSILCSGD------KDGSICFNIFGIFPI 196 (763)
Q Consensus 171 ~~~~~~L~sgs------~DG~I~lw~~~~~~i 196 (763)
++++.++++++ .|+.++||.|..-.+
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 68888888887 478899997654433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0035 Score=63.98 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC--------CcEEEEEEccCC---C---EEEEEEcCCcEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG--------KSVTSLCWRPDG---K---AIAVGLEDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~--------~~V~~l~wspDG---~---~Lasg~~Dg~V~lw 88 (763)
+-..++||||+.+||.+...|+|.+|++.|..++.+++. ..|.++.|-+-- + -|.+-..+|.++=|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 467799999999999999999999999999999988743 246666665521 2 45666667777666
Q ss_pred EccC-----CeEEEEec--c-cCCceeEEEeecCCCceeccC
Q 004298 89 DVEN-----GKLLRSLK--S-HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 89 dve~-----g~~~~~l~--~-h~~~V~~l~ws~~~~~l~s~s 122 (763)
-+.. .+.-+++. . +...|.++.|+|..+.+..|+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 6532 23334433 2 367999999999988777665
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8e-05 Score=76.86 Aligned_cols=214 Identities=13% Similarity=0.107 Sum_probs=133.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc--eEEEecCCC------cEEEEEEcc-CCCEEEEEEcCCcEEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQ--RLWTISPGK------SVTSLCWRP-DGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~--~v~~~~~~~------~V~~l~wsp-DG~~Lasg~~Dg~V~lwd 89 (763)
+..|.+++++.|+..+.++ +|=.|.+|++ ..+ .|..++|.. -|++-.|+| ....++-.++.|+|+|.|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 3459999999999887755 5778999998 222 455566542 489999999 556889999999999999
Q ss_pred ccCCeEEEE----e------------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC---Cccc
Q 004298 90 VENGKLLRS----L------------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP---GLVS 150 (763)
Q Consensus 90 ve~g~~~~~----l------------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~---~~~s 150 (763)
++...+-.. + ..--+.|..+.|+++|+++.+-. --++++||......+.. .+..
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceEEeehHh
Confidence 984322110 0 01125688899999999999873 57899999854222211 1100
Q ss_pred --CCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEE--cCceeeeeeeecccc--------ccc-ccCCCCCce
Q 004298 151 --GDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI--FGIFPIGKINIHKFH--------VAI-PNADEQGTC 217 (763)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~--~~~~~ig~~~i~~~~--------~~~-~s~~~~~~~ 217 (763)
...+...+.+..++.+.++++.+..++++|+.....+++. -++....+......+ ... .+++.....
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~ 395 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRD 395 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcccc
Confidence 0011112334455667777888888999999999999997 333222222111100 000 122222111
Q ss_pred eee------ccceeeEEecCCCCEEEEEeec
Q 004298 218 RLL------NASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 218 ~l~------~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.++ +..|...+|.|..+.++++++.
T Consensus 396 ~~~vd~ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 396 EISVDALDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred ccccchhhhhhHHHhhccCCccceeeeeecC
Confidence 121 2357778899988888887764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00041 Score=78.11 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CC--eEE--EEEccC---ceEEEecCC--CcEEEEEEccCCCEEEEEE-cCCcEEEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATE-DS--KIL--LHRFNW---QRLWTISPG--KSVTSLCWRPDGKAIAVGL-EDGTITLHD- 89 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~-Dg--~V~--v~~l~~---~~v~~~~~~--~~V~~l~wspDG~~Lasg~-~Dg~V~lwd- 89 (763)
+.....+|||||+.||..+. +| .+. +|++.. .....+..+ ......+|+|||+.|+..+ .+|...||.
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 33557899999999887653 23 333 355531 222222222 2346789999999888776 466555554
Q ss_pred -cc-CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 90 -VE-NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 90 -ve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+. .+...+.+..+...+....|+|||+.++..+... ....+.+||...
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~ 360 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDLAT 360 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC---CCcEEEEEECCC
Confidence 43 2334555655556778899999999887654110 124577777654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00023 Score=72.18 Aligned_cols=158 Identities=16% Similarity=0.025 Sum_probs=106.3
Q ss_pred CCeEEEEEcC---CCC-EEEEEeCCCeEEEEEccCceE-EEecC-------CCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEWNP---EKD-LLAMATEDSKILLHRFNWQRL-WTISP-------GKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP---~~~-lLA~~s~Dg~V~v~~l~~~~v-~~~~~-------~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+.+..+.|+- +|+ .++.+..+|.|.+|+.....- ..+.+ .....++.|++-|..++++-.+|.+.+.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3467778863 556 566777889999999854322 22221 11246789999999999999999999666
Q ss_pred ccCCeEEE--EecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 90 VENGKLLR--SLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 90 ve~g~~~~--~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
...+.+.. ..+.|+-..+...|+... ..+.+|+ +|+.+..||.+.+..-+-....-|+. .+..+
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg------DD~~l~~~D~R~p~~~i~~n~kvH~~-------GV~SI 216 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG------DDGSLSCWDIRIPKTFIWHNSKVHTS-------GVVSI 216 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecC------CCceEEEEEecCCcceeeecceeeec-------ceEEE
Confidence 55444443 678899999999998655 4677888 89999999999322111111111111 11112
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
. +..+...++++|+.|-+|++|+.+.
T Consensus 217 ~-ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 217 Y-SSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred e-cCCCCCceEEEeccccceeeeehhc
Confidence 2 2335667999999999999999663
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00034 Score=79.29 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCEEEE-EeCCCe--EEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEc-CC--cEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAM-ATEDSK--ILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLE-DG--TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~-~s~Dg~--V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~-Dg--~V~lwdve~g~~~ 96 (763)
....+|+|+|+.||. .+.+|. |+++++.+..+..+.. .......+|+|||+.|+..+. +| .|.++|+.+++..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 456899999998876 455664 7777776665555543 345677899999998887664 34 4666777777654
Q ss_pred EEecccCCceeEEEeecCCCceeccC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
. +..+........|+|+|+.++..+
T Consensus 344 ~-Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 344 R-LTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred E-EecCCCCCcCeeECCCCCEEEEEE
Confidence 3 322223345578999998876654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=78.43 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEcc-CCe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVE-NGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve-~g~ 94 (763)
++-|..+.|+..|+.+++++.|..|.+|+. .++.+..+. |...|..-.|-| +.+.|+..+.||.|++=.+- +|.
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~ 221 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY 221 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc
Confidence 456999999999999999999999999998 666666665 555666667888 45689999999999987754 454
Q ss_pred EE--EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 LL--RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~--~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
+. ..+..|.++|..++.-|+.. .+.+++ .|+.+.-+|.+...+...........- ..-....+...+
T Consensus 222 ~e~t~rl~~h~g~vhklav~p~sp~~f~S~g------eD~~v~~~Dlr~~~pa~~~~cr~~~~~---~~v~L~~Ia~~P- 291 (559)
T KOG1334|consen 222 VENTKRLAPHEGPVHKLAVEPDSPKPFLSCG------EDAVVFHIDLRQDVPAEKFVCREADEK---ERVGLYTIAVDP- 291 (559)
T ss_pred eecceecccccCccceeeecCCCCCcccccc------cccceeeeeeccCCccceeeeeccCCc---cceeeeeEecCC-
Confidence 43 34557899999999999875 456666 799888888776433221110000000 000111222222
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeee--eecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKI--NIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~--~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+-+.+++|+.|-..++|+...+..... .+.++..+..-. .+ ...|+++++|.++.-|+++-.+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~------~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DD------PVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cC------cccceeEEecCCccceeeeeccc
Confidence 2335899999999999998665432211 111111111111 11 13488999999999999887665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=79.11 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=119.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEE---ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWT---ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~---~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|..+.|+.+.+.|-++..+|-|.||-+ +|+-.-. -.....|.+++|+.||+.|+..+.||.|.+=.++.+++..
T Consensus 72 ~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg 151 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG 151 (1189)
T ss_pred ceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc
Confidence 35999999999999999999999999988 5542111 1244568999999999999999999999888776433322
Q ss_pred -EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcc-cCCcccccCCcccccceecc-----
Q 004298 98 -SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLV-SGDTGFTDDSEDSFRELANS----- 169 (763)
Q Consensus 98 -~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~-s~~~~~~~~~~~~~~~~~~~----- 169 (763)
.+++ ....++.|++|.+.+..+- ..|.+.++|...... ++.... ...++..+.-...+..+.|.
T Consensus 152 KeLkg--~~l~hv~ws~D~~~~Lf~~------ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 152 KELKG--QLLAHVLWSEDLEQALFKK------ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred hhcch--heccceeecccHHHHHhhh------cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 2332 2455789999987766554 577888887654210 000000 00000000001112222221
Q ss_pred -cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 170 -SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 170 -~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|+-..|+++-.+|.+.+--... ... |.-+.+ + -.|..+.|+++|..|++++.+.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eN--D~~------Pvv~dt----g------m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSEN--DPE------PVVVDT----G------MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcC--CCC------CeEEec----c------cEeecceecCCCcEEEEccCcc
Confidence 124556889988888887642110 000 000000 0 1256789999999999987764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5e-05 Score=92.46 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=109.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEE---cCCcEEEEEcc-C--Ce
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVE-N--GK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve-~--g~ 94 (763)
++|+.+.||.+|+.+.++..||.+.+|..+.+....-+ |++..+.++|-- ..+|+++ .++.+.+||.- . ..
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence 77999999999999999999999999999855554443 666666666654 6677765 67899999964 2 23
Q ss_pred EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+++ +.|.+.++++++.|..+.+.+|+ .+|.+.+||.+.. ++..+.. .. +..
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisgg------r~G~v~l~D~rqr--ql~h~~~------------------~~-~~~ 2380 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGG------RKGEVCLFDIRQR--QLRHTFQ------------------AL-DTR 2380 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecC------CcCcEEEeehHHH--HHHHHhh------------------hh-hhh
Confidence 455 78999999999999999999999 9999999999862 1111100 01 244
Q ss_pred eEEEEEcCCCcEEEEEcCce
Q 004298 175 SILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~ 194 (763)
.++++|+..|.|+||....+
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred heeeccCcccceEEEEcccc
Confidence 68999999999999987765
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=73.86 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe---c-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEcc-CCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI---S-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVE-NGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~---~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve-~g~~~~ 97 (763)
..++.|++.+..++++..+|.+.+-..+...+-+. + |.-++....|+- +-..+.+|++||.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999999999999999987544433333332 2 445566666665 44689999999999999998 445544
Q ss_pred E-ecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCC
Q 004298 98 S-LKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM 145 (763)
Q Consensus 98 ~-l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l 145 (763)
+ .+.|...|.+|.-+| ...++++|+ .|..+++||.+....++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGs------YDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGS------YDECIRVLDTRNMGKPL 247 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEec------cccceeeeehhcccCcc
Confidence 4 677899999998875 467899998 89999999999643333
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0039 Score=65.49 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=80.2
Q ss_pred EEEEEcCCCCEEEEEeCC-CeEEEEEc-cCceEEEe----cCCCc----------EEEEEEccCCCEEEEEE-cCCcEEE
Q 004298 25 KIAEWNPEKDLLAMATED-SKILLHRF-NWQRLWTI----SPGKS----------VTSLCWRPDGKAIAVGL-EDGTITL 87 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~D-g~V~v~~l-~~~~v~~~----~~~~~----------V~~l~wspDG~~Lasg~-~Dg~V~l 87 (763)
..++.++++++++++... |.|.++.+ ....++.. .|.+. +.+..+.|||+++++.. .--.|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 779999999999988754 78999999 32333332 33333 88899999999998887 4567899
Q ss_pred EEccCCeEEEEec---ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|+++.|+....-. .-...-.+|.|+|++++...-. --+++|.+|...+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-----EL~stV~v~~y~~ 222 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-----ELNSTVDVLEYNP 222 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-----ccCCEEEEEEEcC
Confidence 9999887543211 2245778999999998765433 1477888886655
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0027 Score=68.35 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=121.1
Q ss_pred EcC-CCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCC-cEEEEEccCCeEEEEecccCCce
Q 004298 29 WNP-EKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG-TITLHDVENGKLLRSLKSHTVAV 106 (763)
Q Consensus 29 ~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg-~V~lwdve~g~~~~~l~~h~~~V 106 (763)
|++ +|+++|..+ -|+..|.+.....+..+.+...|.-..+.-|++-++.|..|| .+-|+|.++++..+.. ..-+.|
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~lg~I 404 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KDLGNI 404 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CCccce
Confidence 555 689999887 577888888777777887777799999999999999999999 8999999988765544 446899
Q ss_pred eEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCc-
Q 004298 107 VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGS- 185 (763)
Q Consensus 107 ~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~- 185 (763)
.++..+++|+.++.+. +...+-+.|+.+...++.. ....+. + +.+.++++...+|-+--+|.
T Consensus 405 ~av~vs~dGK~~vvaN------dr~el~vididngnv~~id--kS~~~l-------I--tdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 405 EAVKVSPDGKKVVVAN------DRFELWVIDIDNGNVRLID--KSEYGL-------I--TDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred EEEEEcCCCcEEEEEc------CceEEEEEEecCCCeeEec--ccccce-------e--EEEEEcCCceeEEEecCccee
Confidence 9999999999888875 3344444455442222111 111112 2 23345677788888877664
Q ss_pred ---EEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCc
Q 004298 186 ---ICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 186 ---I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l 244 (763)
|++++...-.+-.+. . +++ --.+.+|.|||++|+..+...|
T Consensus 468 tq~Iklydm~~~Kiy~vT--T-----~ta-----------~DfsPaFD~d~ryLYfLs~RsL 511 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVT--T-----PTA-----------YDFSPAFDPDGRYLYFLSARSL 511 (668)
T ss_pred eeeEEEEecCCCeEEEec--C-----Ccc-----------cccCcccCCCCcEEEEEecccc
Confidence 556654432222221 1 111 1235689999999999987664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0024 Score=76.07 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=100.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-----------------------CCCc-----------
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-----------------------PGKS----------- 63 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-----------------------~~~~----------- 63 (763)
..+.++|.+++||||.+++|..+..+++.+-.-++..+..-+ +|++
T Consensus 106 g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ 185 (1265)
T KOG1920|consen 106 GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEK 185 (1265)
T ss_pred eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccc
Confidence 344578999999999999999999999877665433221100 1111
Q ss_pred ------------EEEEEEccCCCEEEEEE-----cCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCC
Q 004298 64 ------------VTSLCWRPDGKAIAVGL-----EDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIP 126 (763)
Q Consensus 64 ------------V~~l~wspDG~~Lasg~-----~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~ 126 (763)
=+.|.|+-||+++|+.. ....|++||-+ |..-..-....+.=.+++|-|.|..+++-....
T Consensus 186 ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~- 263 (1265)
T KOG1920|consen 186 EKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT- 263 (1265)
T ss_pred cccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-
Confidence 13499999999999954 33799999977 554333223334557899999998887643111
Q ss_pred cccCCceeecCCCCCCCCCCCcccCCccccc-CCcccccceecccCCCeeEEEE---EcCCCcEEEEEcCce
Q 004298 127 TYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD-DSEDSFRELANSSHQRFSILCS---GDKDGSICFNIFGIF 194 (763)
Q Consensus 127 ~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~L~s---gs~DG~I~lw~~~~~ 194 (763)
.|+.|.|+....-.. ++-.... ..+..+..+.|. .+.++|++ ......|++|..+.+
T Consensus 264 --sd~~IvffErNGL~h-------g~f~l~~p~de~~ve~L~Wn--s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 264 --SDSDIVFFERNGLRH-------GEFVLPFPLDEKEVEELAWN--SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred --CCCcEEEEecCCccc-------cccccCCcccccchheeeec--CCCCceeeeecccccceEEEEEecCe
Confidence 355788886553100 1000000 111124445554 45556776 444555999977665
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.66 E-value=5e-05 Score=54.17 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=36.5
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
|++++++.+|.+.|++|+|+|++..+++++ .|+.+++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~------~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS------SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE------TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC------CCCEEEEEC
Confidence 468899999999999999999999999998 899999996
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00084 Score=74.80 Aligned_cols=73 Identities=22% Similarity=0.354 Sum_probs=64.0
Q ss_pred CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCcee-EEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV-CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 62 ~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~-~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+.-+.|+|.-..||.+..+|.|-++.+. .+.+.++..|...++ +++|.|||+.++.|- .||++++.|...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~------kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF------KDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe------cCCeEEEEEccC
Confidence 357789999999999999999999999987 777888887777777 999999999999985 899999999876
Q ss_pred C
Q 004298 141 R 141 (763)
Q Consensus 141 ~ 141 (763)
+
T Consensus 94 ~ 94 (665)
T KOG4640|consen 94 G 94 (665)
T ss_pred C
Confidence 3
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0031 Score=68.68 Aligned_cols=186 Identities=12% Similarity=0.031 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC---------------CcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED---------------GTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D---------------g~V~l 87 (763)
+...+|||.|.+|++....+ |.+|.- .+.++..+.| ..|.-+.|+|.|++|.+=... +.+.+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 88999999999999877655 777776 5555555554 358899999999999885432 35999
Q ss_pred EEccCCeEEEEecccCCc--ee-EEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 88 HDVENGKLLRSLKSHTVA--VV-CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~--V~-~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
||+.+|.++..+.....+ .+ -+.|+.+..+.+--. ...+.++++...+...+..... ...+.
T Consensus 113 wd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-------~~sl~i~e~t~n~~~~p~~~lr--------~~gi~ 177 (561)
T COG5354 113 WDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-------GSSLYIHEITDNIEEHPFKNLR--------PVGIL 177 (561)
T ss_pred EeccCceeEeeccccCCcccccceeeeeecchhhhhhc-------cCeEEEEecCCccccCchhhcc--------cccee
Confidence 999999999988765554 45 677888877665432 3456666653322222211111 12233
Q ss_pred ceecccCCCeeEEEEE-----cCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEE
Q 004298 165 ELANSSHQRFSILCSG-----DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sg-----s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
.+.+++..+...|+.= ...+.+++|.+..- +. ..+..+....-.++.|.+.|++|++.
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---s~--------------l~tk~lfk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---SV--------------LVTKNLFKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---Ce--------------eeeeeeEeecccEEEEecCCceEEEE
Confidence 3444443333333332 34566666653311 10 01111222233467889999999887
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
....
T Consensus 241 ~~t~ 244 (561)
T COG5354 241 VMTH 244 (561)
T ss_pred EEEe
Confidence 6644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=73.91 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
-|.+++|+-+|..+..+-.||.|.|=.++|.++|.-. .+.-...+.|+||.+.+..+-.+|.+.++|
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlyd 184 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYD 184 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEec
Confidence 3889999999999999999999999999999999754 222333444444444444444444444444
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=74.00 Aligned_cols=179 Identities=12% Similarity=0.057 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEee
Q 004298 33 KDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws 112 (763)
.+.+..|+-...+..+++++.+.-...+-+.--+.-.+.+++++.+|...|+|.+-|..+.+.+|++..|.+.|..+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 3556667666777788886655544432221113344568899999999999999999999999999999999987665
Q ss_pred cCCCceeccCCC---CCcccCCceeecCCCCC--CCCCCCcccCCcccccCCcccccceecccCCCe-eEEEEEcCCCcE
Q 004298 113 EDAQPSKNDFGN---IPTYEDRTSRFFPPAPR--IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF-SILCSGDKDGSI 186 (763)
Q Consensus 113 ~~~~~l~s~s~~---~~~~~d~~i~~wd~~~~--~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~L~sgs~DG~I 186 (763)
.|..+++++.. ....-|..+++||++.. +.++.-+ -...|. .+.|.. ..+++.+..|..
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--~~P~fl------------rf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--YGPQFL------------RFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc--cCchhh------------hhcccccceEEEEecccce
Confidence 47777777632 12335899999999863 2222211 111121 122322 468888888988
Q ss_pred EEEE---cCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 187 CFNI---FGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 187 ~lw~---~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+-+ .+..+.+...++.. ..-+....+|++|..|+++-.++
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~----------------~s~i~~fDiSsn~~alafgd~~g 334 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPN----------------GSGISAFDISSNGDALAFGDHEG 334 (1118)
T ss_pred eeccccccCCCccceeEEccC----------------CCcceeEEecCCCceEEEecccC
Confidence 8765 22222332221110 01267788899988888765544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=71.95 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=73.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEc-----------CCcEEEEEccC
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLE-----------DGTITLHDVEN 92 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~-----------Dg~V~lwdve~ 92 (763)
+.+.|||.|.+|++--.-| |.+|-- +++++..+.|. .|.-+.|||+.++|++=+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 5789999999999877666 667766 66666666664 4888999999999998542 24689999999
Q ss_pred CeEEEEeccc--CCcee-EEEeecCCCceeccC
Q 004298 93 GKLLRSLKSH--TVAVV-CLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~~~~l~~h--~~~V~-~l~ws~~~~~l~s~s 122 (763)
|...+.+..- ...+. -..||.|++++|.-.
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEec
Confidence 9998887652 22333 358999999988653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=73.09 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=89.8
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCcee
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV 107 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~ 107 (763)
+...+|.|+..|.|.+|+. .|+.-|.+. |.+.|+++.|+.+-..|-+++.|+.|..|+..+++.++.++..+..+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 4467889999999999999 455556665 678899999999999999999999999999999999999998889999
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
++..+||+..+.+++ +.+++|+...+
T Consensus 149 sl~is~D~~~l~~as--------~~ik~~~~~~k 174 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS--------RQIKVLDIETK 174 (541)
T ss_pred eEEEcCCCCEEEecc--------ceEEEEEccCc
Confidence 999999999888875 78999998874
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0065 Score=61.19 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=113.4
Q ss_pred EEEEeCCCeEEEEEccCceEEEecCCC--cEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEE--ecccCCceeEEE
Q 004298 36 LAMATEDSKILLHRFNWQRLWTISPGK--SVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRS--LKSHTVAVVCLN 110 (763)
Q Consensus 36 LA~~s~Dg~V~v~~l~~~~v~~~~~~~--~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~--l~~h~~~V~~l~ 110 (763)
+..++.|.++++..+.+.......|.. .+.++..+||++++++.+....|..|.+.+ ++.+.. .....+.=.+.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 445667777777666544333333333 378999999999999999999999999874 433332 223345667899
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
|+.+...+|++. .|+++-+||++....++....+.. +.....+....+......++|...-.-+.+++.+
T Consensus 211 ~s~~~~~FAv~~------Qdg~~~I~DVR~~~tpm~~~sstr----p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 211 FSENDLQFAVVF------QDGTCAIYDVRNMATPMAEISSTR----PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred eccCcceEEEEe------cCCcEEEEEecccccchhhhcccC----CCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 999999999998 899999999986432222111110 0111223333333344556777766778888888
Q ss_pred cCceeeeeee-ecccccccccCCCCCceeeec-cceeeEEecCCCCEEEEEeecC
Q 004298 191 FGIFPIGKIN-IHKFHVAIPNADEQGTCRLLN-ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 191 ~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~-~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+.....- +.. +. .+-.. .-|...+|+.++....+..+..
T Consensus 281 ~R~~~~~q~I~i~~----------d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPD----------DV-ERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cccCceeeEEecCc----------cc-cccccccccccccccCCCcccccccchh
Confidence 7766444321 111 00 00000 1245566777777777665544
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.03 Score=62.68 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=77.4
Q ss_pred eEEEEEcCCC-CEEEE----EeCCCeE----EEEEccCceEE-----EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 24 IKIAEWNPEK-DLLAM----ATEDSKI----LLHRFNWQRLW-----TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~----~s~Dg~V----~v~~l~~~~v~-----~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..++.||-.. ..+-+ .+.+|.+ .+|.....++. .+..+..|.|.+++|+.+.++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 4556676533 33333 2334433 35666444333 334677899999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
...+-.... .+.-..+.++|+|+|..++.|+ ..|.+.+||..
T Consensus 288 ~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s------~qGelQ~FD~A 329 (545)
T PF11768_consen 288 TTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGS------EQGELQCFDMA 329 (545)
T ss_pred cCCCeeeee--eecccceEEEEcCCCcEEEEEc------CCceEEEEEee
Confidence 876633322 3345789999999999999998 78999999975
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.03 Score=69.89 Aligned_cols=218 Identities=16% Similarity=0.083 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEccCceEEEecC---------C---------CcEEEEEEcc-CCCEEEEEEcCC
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRFNWQRLWTISP---------G---------KSVTSLCWRP-DGKAIAVGLEDG 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~~v~~~~~---------~---------~~V~~l~wsp-DG~~Lasg~~Dg 83 (763)
...++++|+++.|.++. ..+.|+++++..+.+.++.. + .....++++| +|..+++.+.++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 46789999888665554 45678889986666655521 0 1246899999 566667777899
Q ss_pred cEEEEEccCCeEEEEeccc---------------CCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCC
Q 004298 84 TITLHDVENGKLLRSLKSH---------------TVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h---------------~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~ 147 (763)
.|++||..++... .+.+. -.....|+|+|++..+ ++.+ .++.|+.||..........
T Consensus 706 ~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred eEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEEECCCCcEEEEE
Confidence 9999999877653 22111 1235679999998743 4444 6789999987642111000
Q ss_pred cccC---C--cccccC----Ccccc-cceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCce
Q 004298 148 LVSG---D--TGFTDD----SEDSF-RELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTC 217 (763)
Q Consensus 148 ~~s~---~--~~~~~~----~~~~~-~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~ 217 (763)
.... . ..+... ....+ .......+++++++++-+.+++|++|+.....+-++..... .+..++..
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-----~G~~dG~~ 853 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-----AGFKDGKA 853 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC-----cCCCCCcc
Confidence 0000 0 000000 00000 01122345667788888899999999865443333221110 00011100
Q ss_pred -eeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 218 -RLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 218 -~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.---.....+++++||+ ++++-.. +..|.++.+++.
T Consensus 854 ~~a~l~~P~GIavd~dG~-lyVaDt~-----------Nn~Irvid~~~~ 890 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGR-LFVADTN-----------NSLIRYLDLNKG 890 (1057)
T ss_pred cccccCCceEEEEeCCCC-EEEEECC-----------CCEEEEEECCCC
Confidence 00001345789999997 5554321 236777777654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.023 Score=63.75 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=49.7
Q ss_pred eEEEEEccCceEEEecCCCcEEEEEEccCCCE-EEEEEc---CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTISPGKSVTSLCWRPDGKA-IAVGLE---DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~-Lasg~~---Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|.+-+.+|.....+..+..+...+|+|||+. ++..+. +..|.++|+.+|+...-. ...+.+....|+|||+.++
T Consensus 170 ~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEE
Confidence 45555554443333333346788999999984 665443 356899999888764433 3455667788999998665
Q ss_pred c
Q 004298 120 N 120 (763)
Q Consensus 120 s 120 (763)
.
T Consensus 249 ~ 249 (419)
T PRK04043 249 L 249 (419)
T ss_pred E
Confidence 4
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0052 Score=76.57 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=100.4
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEecC----------------CCcEEEEEEccCCCEEE-EEEcCCcEE
Q 004298 25 KIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTISP----------------GKSVTSLCWRPDGKAIA-VGLEDGTIT 86 (763)
Q Consensus 25 ~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~----------------~~~V~~l~wspDG~~La-sg~~Dg~V~ 86 (763)
..++++| ++.++++.+.++.|++|+.....+..+.. ......|+|+|||+.|. +-+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 5789999 56777777888999999985554433210 12356799999998555 445779999
Q ss_pred EEEccCCeEEEEecc-------------c--------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC-CC
Q 004298 87 LHDVENGKLLRSLKS-------------H--------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI-PQ 144 (763)
Q Consensus 87 lwdve~g~~~~~l~~-------------h--------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~-~~ 144 (763)
+||+.++.......+ + -.....++++++|..+++.. .++.|++||..... ..
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCeEEE
Confidence 999987653211100 0 11245788999988776665 78999999976431 11
Q ss_pred CCCcccCCcccccC--Ccccc-cceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 145 MPGLVSGDTGFTDD--SEDSF-RELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 145 l~~~~s~~~~~~~~--~~~~~-~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+.+ .+..++.++ ....+ .......+++++++++-+.+++|++|+....
T Consensus 840 iaG--~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 840 LAG--TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred Eec--cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 111 111111100 00111 1112234567788999899999999986553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.058 Score=58.52 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=60.1
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEEc-cCceEEEecCCC--------cEEEEEEccCCCEEEEEE-c-CCcEEE
Q 004298 29 WNPEKDLLAMATE----------DSKILLHRF-NWQRLWTISPGK--------SVTSLCWRPDGKAIAVGL-E-DGTITL 87 (763)
Q Consensus 29 ~sP~~~lLA~~s~----------Dg~V~v~~l-~~~~v~~~~~~~--------~V~~l~wspDG~~Lasg~-~-Dg~V~l 87 (763)
.||+++.+.++.. ++.|.+|+. +.+.+..+.-+. ....++++|||+++.+.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999988877655 688999999 778887776332 344899999999999877 4 799999
Q ss_pred EEccCCeEEEEecc
Q 004298 88 HDVENGKLLRSLKS 101 (763)
Q Consensus 88 wdve~g~~~~~l~~ 101 (763)
.|+++++.+..+..
T Consensus 133 vD~~~~kvv~ei~v 146 (352)
T TIGR02658 133 VDLEGKAFVRMMDV 146 (352)
T ss_pred EECCCCcEEEEEeC
Confidence 99999999988764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00035 Score=79.48 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=87.7
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 25 KIAEWNPEKDLLAMATE----DSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~----Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+..+|+|...++|+++- .|+|.||--+|++-..+...-.++++||+|..-.||+|+.-|.+.+|...+.+.-....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 34679999999999874 47898888777744444434457889999999999999999999999988776666666
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.|..+|..+.|+++|..+.++. ..|.+.+|..
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d------~~g~v~lwr~ 130 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLD------NPGSVHLWRY 130 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcC------CCceeEEEEe
Confidence 8999999999999999999987 6777777743
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00073 Score=71.48 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
|-..++.++|+||+++|+++..|+.|++-.......+.++. +|..-|..|+..++.. +.++| .|+++++||.
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~s------GD~tlr~Wd~ 222 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGS------GDKTLRLWDI 222 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecC------CCCcEEEEec
Confidence 55678999999999999999999999998887666676654 6999999999887654 66776 7999999998
Q ss_pred CC
Q 004298 139 AP 140 (763)
Q Consensus 139 ~~ 140 (763)
.+
T Consensus 223 ~s 224 (390)
T KOG3914|consen 223 TS 224 (390)
T ss_pred cc
Confidence 76
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.018 Score=64.34 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=53.7
Q ss_pred EEEEcCCCCEEEEEeCC-----------CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 26 IAEWNPEKDLLAMATED-----------SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~D-----------g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++.+|.|-.+|+..++ ..|.||+..|+.++++. ..+.+.++.|+.+.+ |++-..||.++++|+. |
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~-G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF-G 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC-C
Confidence 46778888888877655 15999999999999986 347899999998654 5566699999999986 4
Q ss_pred eE
Q 004298 94 KL 95 (763)
Q Consensus 94 ~~ 95 (763)
+.
T Consensus 111 ~~ 112 (410)
T PF04841_consen 111 EF 112 (410)
T ss_pred ce
Confidence 44
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.028 Score=67.45 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=115.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc----CCeE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE----NGKL- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----~g~~- 95 (763)
+.|.++.|.-+.+-+..+..+|.|.+.+.....+-.. .-...|.+++|+||++.++.....+++.+.+-. .-+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4688899998888888999999998887633222222 234569999999999999999999988776531 0011
Q ss_pred ----------E--------EEeccc---------------------CCceeEEEeecCCCceeccCCCCCcccC-Cceee
Q 004298 96 ----------L--------RSLKSH---------------------TVAVVCLNWEEDAQPSKNDFGNIPTYED-RTSRF 135 (763)
Q Consensus 96 ----------~--------~~l~~h---------------------~~~V~~l~ws~~~~~l~s~s~~~~~~~d-~~i~~ 135 (763)
+ ..|++. .+.=+.|+|.-||.++++.. .....+ +.+++
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~--~~~~~~~RkirV 226 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF--VESETGTRKIRV 226 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE--EeccCCceeEEE
Confidence 1 122210 11234599999999888732 000123 89999
Q ss_pred cCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE---cCCCcEEEEEcCceeeeeeeecccccccccCC
Q 004298 136 FPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG---DKDGSICFNIFGIFPIGKINIHKFHVAIPNAD 212 (763)
Q Consensus 136 wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg---s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~ 212 (763)
||....+........+. -..+.| .|.+..+++- ++|+.|.++.-....-|.+.+.- +.
T Consensus 227 ~drEg~Lns~se~~~~l----------~~~LsW--kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~---p~---- 287 (1265)
T KOG1920|consen 227 YDREGALNSTSEPVEGL----------QHSLSW--KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF---PL---- 287 (1265)
T ss_pred ecccchhhcccCccccc----------ccceee--cCCCCeEeeeeecCCCCcEEEEecCCccccccccCC---cc----
Confidence 99874332221111111 112333 3566666654 35667888765544555443211 00
Q ss_pred CCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 213 EQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 213 ~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+ -.+|..++|+.++..|++..+
T Consensus 288 -d------e~~ve~L~Wns~sdiLAv~~~ 309 (1265)
T KOG1920|consen 288 -D------EKEVEELAWNSNSDILAVVTS 309 (1265)
T ss_pred -c------ccchheeeecCCCCceeeeec
Confidence 0 013678888888888877544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00047 Score=71.43 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=89.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc---c---CceEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF---N---WQRLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~---~~~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
++|.++.|.-.++++..|...|.|.++|+ + +.+...+.|+..|+++..-. ++++|++.+.+|+|++||.+--+
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K 332 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK 332 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence 45888999998999999999999999998 2 33455566999999988766 88999999999999999988555
Q ss_pred E---EEEecccCCceeEEE--eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 L---LRSLKSHTVAVVCLN--WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~---~~~l~~h~~~V~~l~--ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+ +.++.+|-+.-.-+- ..+....+++++ +|...|+|.+..
T Consensus 333 ~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G------dDcytRiWsl~~ 377 (425)
T KOG2695|consen 333 CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG------DDCYTRIWSLDS 377 (425)
T ss_pred cccceeeeecccccccccccccccccceEEEcc------CeeEEEEEeccc
Confidence 5 888888865433332 334455667777 899999998774
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0058 Score=69.75 Aligned_cols=194 Identities=12% Similarity=-0.025 Sum_probs=111.2
Q ss_pred EcCCCCEEEE-EeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE--------------------------
Q 004298 29 WNPEKDLLAM-ATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-------------------------- 80 (763)
Q Consensus 29 ~sP~~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-------------------------- 80 (763)
++|+|..+.. .-..+.+.+.+. +.+.+|++.-+.....+.++|||+++.+.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3455544322 222344556665 445567766555556677777777776665
Q ss_pred --------------cCCcEEEEEccC-----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 81 --------------EDGTITLHDVEN-----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 81 --------------~Dg~V~lwdve~-----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.++.|.+.|..+ .+.+..+.. ......+.++|||++++.++. .+.++.+.|....
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k~ 353 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRKL 353 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCC-----CCCcEEEEEChhh
Confidence 235688888877 355555543 567788999999998876652 5778888877642
Q ss_pred CCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-----------eeeeeeeeccccccccc
Q 004298 142 IPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI-----------FPIGKINIHKFHVAIPN 210 (763)
Q Consensus 142 ~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-----------~~ig~~~i~~~~~~~~s 210 (763)
..-...........+...+-....+...++++++...+-.-|..|..|+++. ..+.+++++-.++|..+
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~ 433 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHA 433 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeee
Confidence 1100000000011111111122233344567788888888999999998665 24455666555544432
Q ss_pred CCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 211 ADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 211 ~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.... .-.|||++|+++..
T Consensus 434 ~~g~-------------t~~~dgk~l~~~nk 451 (635)
T PRK02888 434 SMGE-------------TKEADGKWLVSLNK 451 (635)
T ss_pred cCCC-------------cCCCCCCEEEEccc
Confidence 2111 23688888887654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00073 Score=67.59 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEE-EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecC
Q 004298 61 GKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLL-RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 61 ~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~-~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd 137 (763)
.+.|++++-+| ..+.+++|+.||.+-+||.++.... ..++.|+.+|+-+.|+|.+ ..+.+++ +||.+-.||
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s------edGslw~wd 252 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS------EDGSLWHWD 252 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec------CCCcEEEEc
Confidence 34699999999 5567888999999999999987433 3467899999999999854 5777777 899999999
Q ss_pred CCC
Q 004298 138 PAP 140 (763)
Q Consensus 138 ~~~ 140 (763)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 874
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=65.43 Aligned_cols=203 Identities=12% Similarity=0.170 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc--eEEEe----c-C------------CCcEEEEEEccCCC--EEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ--RLWTI----S-P------------GKSVTSLCWRPDGK--AIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~--~v~~~----~-~------------~~~V~~l~wspDG~--~Lasg~ 80 (763)
..|+++.|.-.|.++|+|...|.|.+|.-+.. .-+.+ + | ..+|..|.|-.++. .+...+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 45899999999999999999999988876322 12211 1 1 24689999987654 577788
Q ss_pred cCCcEEEEEccCCeE-------------------E-----------------------EEe-cccCCceeEEEeecCCCc
Q 004298 81 EDGTITLHDVENGKL-------------------L-----------------------RSL-KSHTVAVVCLNWEEDAQP 117 (763)
Q Consensus 81 ~Dg~V~lwdve~g~~-------------------~-----------------------~~l-~~h~~~V~~l~ws~~~~~ 117 (763)
.|.+|++|-+..... + +.+ ..|.-.|.+++++.|...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 999999998754310 0 000 135566788888888887
Q ss_pred eeccCCCCCcccCCceeecCCCCCCCCCCC-cccCCcccccCCcccccceecccCCC-eeEEEEEcCCCcEEEEEcCcee
Q 004298 118 SKNDFGNIPTYEDRTSRFFPPAPRIPQMPG-LVSGDTGFTDDSEDSFRELANSSHQR-FSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 118 l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~-~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
+.++ +|=.|.+|++.-.-....- -..++. ..+...-+.. ..+++. .+++.-.++.|.|++.+.+...
T Consensus 187 ~lSa-------DdLrINLWnl~i~D~sFnIVDiKP~n--meeLteVItS--aeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 187 LLSA-------DDLRINLWNLEIIDGSFNIVDIKPHN--MEELTEVITS--AEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeec-------cceeeeeccccccCCceEEEeccCcc--HHHHHHHHhh--cccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 7777 5778888876531100000 000000 0000011111 123332 3566677889999998765221
Q ss_pred ee--eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 196 IG--KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 196 ig--~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
.. .-.+........... -+.-.-.+|..+.||++|++++.
T Consensus 256 lcdn~~klfe~~~D~v~~~---ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVD---FFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred hccCchhhhhhccCcccch---hHHHHhhhhcceEEcCCCcEEEE
Confidence 11 000000000000000 00001146889999999998864
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.017 Score=58.28 Aligned_cols=143 Identities=15% Similarity=0.022 Sum_probs=84.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCceE--EEec-CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCCeEEEEecccC--Cc
Q 004298 32 EKDLLAMATEDSKILLHRFNWQRL--WTIS-PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENGKLLRSLKSHT--VA 105 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l~~~~v--~~~~-~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~--~~ 105 (763)
+...||.|+..|...+|..+.... .... +...|+-+.=.-|. --+..++.|.++++++++-+..... .|. -.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eeccccc
Confidence 457899999999999999853322 2221 22212111111122 2467778899999998874322111 232 23
Q ss_pred eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC---CCcccCCcccccCCcccccceecccCCCeeEEEEEcC
Q 004298 106 VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM---PGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDK 182 (763)
Q Consensus 106 V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~ 182 (763)
+.+++.++++++.++.+ +.+.+-+|.+......+ ......+.+| ..+++.+...+|+++.
T Consensus 161 ~ns~~~snd~~~~~~Vg------ds~~Vf~y~id~~sey~~~~~~a~t~D~gF-----------~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVG------DSRRVFRYAIDDESEYIENIYEAPTSDHGF-----------YNSFSENDLQFAVVFQ 223 (344)
T ss_pred eeeeEEcCCCceEEEec------CCCcceEEEeCCccceeeeeEecccCCCce-----------eeeeccCcceEEEEec
Confidence 88999999999988876 55566665443311111 1111122222 3345566778999999
Q ss_pred CCcEEEEEcCc
Q 004298 183 DGSICFNIFGI 193 (763)
Q Consensus 183 DG~I~lw~~~~ 193 (763)
||++.+|+.+.
T Consensus 224 dg~~~I~DVR~ 234 (344)
T KOG4532|consen 224 DGTCAIYDVRN 234 (344)
T ss_pred CCcEEEEEecc
Confidence 99999998664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0082 Score=62.47 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=97.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEec----CCCcEEEEEEccCCCEEEE--------------
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTIS----PGKSVTSLCWRPDGKAIAV-------------- 78 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~----~~~~V~~l~wspDG~~Las-------------- 78 (763)
..|.++++++++++...|.+|-..|++.=+.+ +.++.-... |...|..+-|+-....+++
T Consensus 66 ~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 66 YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 45677999999999999999999998877665 222211111 2223333333322222222
Q ss_pred -------------------------EEcCCcEEEEEcc--CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCC
Q 004298 79 -------------------------GLEDGTITLHDVE--NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR 131 (763)
Q Consensus 79 -------------------------g~~Dg~V~lwdve--~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~ 131 (763)
|-..|.|.+..++ .-..+.++.+|.+.+++++|.+....+.+|. .|.
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~------~d~ 219 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA------SDH 219 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc------ccC
Confidence 2233344433332 2345677789999999999999999999997 899
Q ss_pred ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 132 TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
.+.+||+......... ..++..- ...+. .-+....+.+++.||.|.+|+.+..
T Consensus 220 ~vi~wdigg~~g~~~e-l~gh~~k-------V~~l~--~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYE-LQGHNDK-------VQALS--YAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceEEEeccCCcceeee-eccchhh-------hhhhh--hhhhheeeeeccCCCeEEEEeccce
Confidence 9999998653211110 1111111 11111 1233467999999999999986554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.23 Score=55.86 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc---------eEEEec---------------------------CCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQ---------RLWTIS---------------------------PGKSVTS 66 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~---------~v~~~~---------------------------~~~~V~~ 66 (763)
...+.+||+|+.++++ .||.-.||.. .+. -+|... ....+..
T Consensus 35 p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~ 113 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEK 113 (443)
T ss_dssp -SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEE
T ss_pred CeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccce
Confidence 6788999999988884 4666666664 211 122211 0011222
Q ss_pred EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 67 l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
|-- |..|++.+.+ .|.+||+++++.++++.. .+|..+.|++++.+++-.+ +.++.+++
T Consensus 114 If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t-------~~~i~il~ 171 (443)
T PF04053_consen 114 IFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVT-------KDSIYILK 171 (443)
T ss_dssp EE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE--------S-SEEEEE
T ss_pred EEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEe-------CCeEEEEE
Confidence 211 8888877655 899999999999999974 3489999999999887765 44555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0087 Score=65.28 Aligned_cols=116 Identities=12% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcC---CcEEEEEccCCe-E
Q 004298 22 SQIKIAEWNPEKDLLAMAT--EDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLED---GTITLHDVENGK-L 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D---g~V~lwdve~g~-~ 95 (763)
+.|..++|+|+++.+++.+ ..-.+.++++.++..+.+. ...=+.+-|+|.++++++++-| |.|-+||..... +
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P-e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP-EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccceEEecC-CcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 4599999999999888755 6678999999888555554 3444668899999999998854 779999987543 3
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+..+.+ ...+-+.|+|+++++.+.-..-..-.|..+++|++..
T Consensus 354 ~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 335543 3456678999999887654333334688999998765
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.029 Score=62.81 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCEEEEEe---CC-CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE-cCCc--EEEEEccCCeE
Q 004298 24 IKIAEWNPEKDLLAMAT---ED-SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGT--ITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s---~D-g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~--V~lwdve~g~~ 95 (763)
+..-+|+|+++.++..+ .. ..+.++++ .+++.........-...+|+|||+.|+... .||. |.++|+.++.
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~- 273 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN- 273 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-
Confidence 67789999998887653 22 35888888 344333333344456789999999887765 5665 5666766555
Q ss_pred EEEecccCCceeEEEeecCCCceeccC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+..+....+.-+.-.|+|+|+.++..+
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~S 300 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFTS 300 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEEe
Confidence 444554444445778999999887665
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0028 Score=68.55 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---C----------ceEEE-ec---CCCcEEEEE-EccCCCEEEEEEcC
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN---W----------QRLWT-IS---PGKSVTSLC-WRPDGKAIAVGLED 82 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~----------~~v~~-~~---~~~~V~~l~-wspDG~~Lasg~~D 82 (763)
|-.|++++++.++.-+.++-.|-.|++++-+ | +.+.. ++ +...|.++- |-|...|+++|++-
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 3459999999766444445567789999762 3 11111 11 223477765 67888999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|.|.||+-.++++++-+.+....|+|+.=+|--..+++++ -|..|++|....
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP~~ 467 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTPLT 467 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecCCc
Confidence 9999999999999988888777999999999888999988 899999998754
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0058 Score=69.16 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=83.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC--C-CcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP--G-KSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+....|..|..-+++-++++++.|+..|.+++|+-.+.....++. + ..+..+..+++..+.|.|+..|.|.++-+.+
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 344445568888888999999999999999999997776666654 2 3455677899999999999999999998876
Q ss_pred CeE-----EEEe-cccCCceeEEEeecCCCceeccC
Q 004298 93 GKL-----LRSL-KSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~-----~~~l-~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.. +... +.|...|+|++|++|+..+.+|.
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD 143 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD 143 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecC
Confidence 422 1111 24678999999999999988885
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.005 Score=64.02 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=98.6
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-----eEEEEe
Q 004298 26 IAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-----KLLRSL 99 (763)
Q Consensus 26 ~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-----~~~~~l 99 (763)
.++|+-+- -+=++.+.+-.|.+-++.+..-..+.....|.++.|.-.+.++..|+.+|.|..+|++.+ .+.+.+
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 34676432 122344556666666663333333445567899999999999999999999999999853 455555
Q ss_pred cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 100 KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.|.+.|+++..-. +++.+.+.+ .+++|++||.+-... +-.....||.... ..+....++...++
T Consensus 296 -yh~Ssvtslq~Lq~s~q~LmaS~------M~gkikLyD~R~~K~~~~V~qYeGHvN~~-------a~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 296 -YHDSSVTSLQILQFSQQKLMASD------MTGKIKLYDLRATKCKKSVMQYEGHVNLS-------AYLPAHVKEEEGSI 361 (425)
T ss_pred -EcCcchhhhhhhccccceEeecc------CcCceeEeeehhhhcccceeeeecccccc-------cccccccccccceE
Confidence 5899999998765 566666655 799999999875322 1111222332211 01122234445577
Q ss_pred EEEcCCCcEEEEEcCc
Q 004298 178 CSGDKDGSICFNIFGI 193 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~ 193 (763)
++++.|...++|-.+.
T Consensus 362 ~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDS 377 (425)
T ss_pred EEccCeeEEEEEeccc
Confidence 7789999999997553
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0068 Score=66.19 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=94.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-------CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-------GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-------g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
|..+|.+++--.+.+.+++++.|++|++|.++. ..+..+++.|..+|..+.|-.+.++++++ |+.
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--------D~g 805 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--------DGG 805 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--------cCc
Confidence 345677766556777899999999999999862 23566788999999999999999998886 788
Q ss_pred eeecCCCCC--CCC---CCCcccCCcccccCCcccccceecccCCCeeEEEEE-cCCCcEEEEEcCceee-eeeeecccc
Q 004298 133 SRFFPPAPR--IPQ---MPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG-DKDGSICFNIFGIFPI-GKINIHKFH 205 (763)
Q Consensus 133 i~~wd~~~~--~~~---l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg-s~DG~I~lw~~~~~~i-g~~~i~~~~ 205 (763)
+.+||.--. +.. .+.+.++ . .+.+..+-+..+++.| +...+|++++.++-.. ....+...+
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~---------~---~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAG---------G---NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCC---------c---eeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 999986431 111 1111111 0 1122222233344444 7888999987554321 122222111
Q ss_pred cccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 206 VAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 206 ~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++ ++.+.+++..+.|+.++++.+.+
T Consensus 874 ~P-------------na~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 874 GP-------------NALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred CC-------------chheeEEEeccCcchhhHHhcCC
Confidence 11 12356788888888888876654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0055 Score=69.27 Aligned_cols=157 Identities=13% Similarity=0.214 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCeEEEEEc---cCceEEEec--CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEK--DLLAMATEDSKILLHRF---NWQRLWTIS--PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l---~~~~v~~~~--~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g 93 (763)
=.|-...|||.- ++-++.+....-.+|++ +.+.|--+. |+..|+.+.|+|.. ..+|+++-|..|..||+++.
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 347788898854 66666666666678888 445554443 66789999999954 48899999999999999864
Q ss_pred -eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 94 -KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 94 -~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
..+.....-...-+.+.|+.-...+...+ ..+.+++||.+....++... .++...+ ..+.+.. -
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlass------hg~~i~vwd~r~gs~pl~s~-K~~vs~v-------n~~~fnr-~ 212 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASS------HGNDIFVWDLRKGSTPLCSL-KGHVSSV-------NSIDFNR-F 212 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhc------cCCceEEEeccCCCcceEEe-cccceee-------ehHHHhh-h
Confidence 34555544456678899986554443333 57789999988643332211 1122111 1111100 1
Q ss_pred CeeEEEEEcCCCcEEEEEcCc
Q 004298 173 RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~ 193 (763)
....+.+.+.||+|++|+|+.
T Consensus 213 ~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 213 KYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhhcccCCCCceeeecccc
Confidence 123577888999999998764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=65.04 Aligned_cols=101 Identities=14% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCeEEEEEcc--CceEEEec--CCCcEEEEEEccCCCEEEEEE---cCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATE---DSKILLHRFN--WQRLWTIS--PGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~---Dg~V~v~~l~--~~~v~~~~--~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve 91 (763)
..|..++|-|.|+.+++-+. ..++.+|.++ ..+..-++ .....+.+-|+|.|++++++. ..|.+..+|..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 34889999999999887543 3568888874 22211111 335678899999999998875 57899999987
Q ss_pred CCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
...+...-.......+.+.|.|.|+++++++
T Consensus 526 ~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 526 YADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hhhhhhccCccccccccceECCCCCEEEEee
Confidence 5333322211124567899999999999886
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.026 Score=64.48 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccC------CC------EEEEEEcCCcEEEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPD------GK------AIAVGLEDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspD------G~------~Lasg~~Dg~V~lwd 89 (763)
-.++.|+|.| ++|.|+.. .|.|-+. .-|.+..+. |...|+.+.|.|- +. .||++.-.|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4568999876 67777754 4666665 778888776 6778999999872 22 578888899999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCC---C-ceeccCCCCCcccCCceeecCCCC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDA---Q-PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~---~-~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
...+..+..+..|..+|..+.|-+.. + .++.-. ...++-+|+..+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh------~ss~lvLwntdt 144 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH------GSSTLVLWNTDT 144 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec------CCcEEEEEEccC
Confidence 99999999999899999999997643 2 222222 355677776544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.026 Score=61.26 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=67.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCC-EEEEEE-cCCcEE
Q 004298 20 VASQIKIAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK-AIAVGL-EDGTIT 86 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~-~Lasg~-~Dg~V~ 86 (763)
.|+.+.-++++|+++.+.+.. ..+.|.+++. +++++..+.-+..+..++++|||+ .|.+.. .++.|.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 456667799999998877743 2257999999 777888888899999999999999 777776 688999
Q ss_pred EEEccCCeEEEEec
Q 004298 87 LHDVENGKLLRSLK 100 (763)
Q Consensus 87 lwdve~g~~~~~l~ 100 (763)
++|+.+++.++++.
T Consensus 326 ViD~~t~k~i~~i~ 339 (352)
T TIGR02658 326 IFDAETGKELSSVN 339 (352)
T ss_pred EEECcCCeEEeeec
Confidence 99999999999883
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=58.93 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEcc----CC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVE----NG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve----~g 93 (763)
+.|.....-|..+-+.+++.|.+++||-- .+|.--.+.| ..+++++.++++...|.+|-.+|++.-+.+. ..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 34677777788888999999999999976 4555445543 4678999999999999999999999988753 23
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..++.+..|...|..+.|+.....+.+.+
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e~V~s~~ 133 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHEWVLSTG 133 (404)
T ss_pred chhhhhhhhhcceeeEEecCCceeEEEec
Confidence 34566678888999888887766666654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.005 Score=63.05 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=107.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---C-ceEEEecCCC------cEEEEEEcc-CCCEEEEEEcCCcEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFN---W-QRLWTISPGK------SVTSLCWRP-DGKAIAVGLEDGTITL 87 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~-~~v~~~~~~~------~V~~l~wsp-DG~~Lasg~~Dg~V~l 87 (763)
..|..|.+++++.+...+.++ +|=.|.+|++. + -.+..++|.. -|++..|+| ....+.-.++.|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 445668899999988877654 57789999982 2 2455565432 488999999 4568888999999999
Q ss_pred EEccCCeE------EE--Ee--------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC---CCc
Q 004298 88 HDVENGKL------LR--SL--------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM---PGL 148 (763)
Q Consensus 88 wdve~g~~------~~--~l--------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l---~~~ 148 (763)
.|++.... +. ++ ..-.+.|..+.|+++|+++++-+ --++++||......++ +.+
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEecccccCCceeechH
Confidence 99983211 00 11 11235788899999999999874 6789999987632222 211
Q ss_pred ccCC--cccccCCcccccceecccCCCeeEEEEEcCCCcEEEEE
Q 004298 149 VSGD--TGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 149 ~s~~--~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~ 190 (763)
..-. ..-..+.+..+..+...++.+...+++|+..+..-+|-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 1100 01112234445556666666767788888777766663
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0017 Score=72.37 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=97.2
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCeEEEEEc--cCceEEEec--CCCcEEEEEEcc-CCCEEEEEE----cCCcEEEEEcc
Q 004298 23 QIKIAEWNPEK--DLLAMATEDSKILLHRF--NWQRLWTIS--PGKSVTSLCWRP-DGKAIAVGL----EDGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l--~~~~v~~~~--~~~~V~~l~wsp-DG~~Lasg~----~Dg~V~lwdve 91 (763)
.+.|++|+-+. .++|+|..+|.|.+-.+ +-..-|.+. +-...++++|++ |...||.|- .|..+.|||++
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 47888887655 48899999999977666 111123332 345789999999 888899886 47789999998
Q ss_pred CC--eEE--EEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc-ccCCcccccCCcccccc
Q 004298 92 NG--KLL--RSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL-VSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 92 ~g--~~~--~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~-~s~~~~~~~~~~~~~~~ 165 (763)
++ .+. ..+.+ .......++|-.+.+.+.+|. ..+.+.++|.+......... ...+.+
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm------~sr~~~ifdlRqs~~~~~svnTk~vqG----------- 200 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM------TSRSVHIFDLRQSLDSVSSVNTKYVQG----------- 200 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhccc------ccchhhhhhhhhhhhhhhhhhhhhccc-----------
Confidence 76 221 12222 334566899998888888887 67889999988532211100 001111
Q ss_pred eecccCC-CeeEEEEEcCCCcEEEEEc
Q 004298 166 LANSSHQ-RFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 166 ~~~~~~~-~~~~L~sgs~DG~I~lw~~ 191 (763)
+. .++ ..+++++.. ||.|.+|+.
T Consensus 201 ~t--Vdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 201 IT--VDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred ce--ecCCCCCceeccc-cCceeeccc
Confidence 11 122 446777655 999999983
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.033 Score=63.24 Aligned_cols=183 Identities=12% Similarity=0.136 Sum_probs=115.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceEEEecC--CCcEEEEEEccCCC--EEEEEEcCCcEEEEEcc---C
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRLWTISP--GKSVTSLCWRPDGK--AIAVGLEDGTITLHDVE---N 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v~~~~~--~~~V~~l~wspDG~--~Lasg~~Dg~V~lwdve---~ 92 (763)
+++.++..+|.|+-+|+++.-|- .+.++ .+.+-.-+.| .-.|-.+.|+|... +-++..+...-.+|++. +
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 34888999999999999887774 44555 3433322222 22467788988543 56666667777789875 2
Q ss_pred CeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+-..+.+|...|+.+.|+|+.. .+++++ -|..+..||++.+..+......-+.+.. .+.|..
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcs------vdt~vh~wd~rSp~~p~ys~~~w~s~as--------qVkwny- 168 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCS------VDTYVHAWDMRSPHRPFYSTSSWRSAAS--------QVKWNY- 168 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeecc------ccccceeeeccCCCcceeeeecccccCc--------eeeecc-
Confidence 334445678999999999999875 567777 7999999999986555444333332221 233332
Q ss_pred CCeeEEEEEcCCCcEEEEEc--Cceeeeeeeecccc-----------cccccCCCCCceeeec
Q 004298 172 QRFSILCSGDKDGSICFNIF--GIFPIGKINIHKFH-----------VAIPNADEQGTCRLLN 221 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~--~~~~ig~~~i~~~~-----------~~~~s~~~~~~~~l~~ 221 (763)
.+.+++++ +....|.+|+. |+-+...+..+... ....+.+.+++++.|+
T Consensus 169 k~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~ 230 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWD 230 (1081)
T ss_pred cCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeec
Confidence 34455655 44667888873 33343333322111 1123677889999997
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.007 Score=71.42 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=73.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCceEE---EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFNWQRLW---TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~---~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
++-.-.+-.+|.|+..|.|...+.+|..-| .-..+.+|++++|+.||++++.|..+|.|.+||+.+++.++.+..|.
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 333345667899999999999888775333 33345789999999999999999999999999999999999988776
Q ss_pred CceeE---EEeecCCCceecc
Q 004298 104 VAVVC---LNWEEDAQPSKND 121 (763)
Q Consensus 104 ~~V~~---l~ws~~~~~l~s~ 121 (763)
.+.+. +.|..++..+.++
T Consensus 173 ap~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEc
Confidence 65544 4555555545444
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.23 Score=51.35 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEec-CC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--e--
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTIS-PG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--K-- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~-~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~-- 94 (763)
..+..++|+|+.+ ++|+....+.|.-++.+|+.+..+. .+ +-.-+|++.-+|+++++.-.++.+.++++... .
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~ 101 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD 101 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence 3599999999765 6666667788888888888887775 22 45788999888887777667999999998421 1
Q ss_pred --EEEEec-----ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc--CCcccccc
Q 004298 95 --LLRSLK-----SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD--DSEDSFRE 165 (763)
Q Consensus 95 --~~~~l~-----~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~--~~~~~~~~ 165 (763)
...++. .++..+-.++|.+.+..+..+- +..-..++..................+.. .....+..
T Consensus 102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k------E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK------ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp EEEEEEEE---S---SS--EEEEEETTTTEEEEEE------ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred hhhceEEecccccCCCcceEEEEEcCCCCEEEEEe------CCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 112222 2345689999999866544443 33333343322100000000000000000 00001112
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+... ...+++++..+.+..+..++........+.+....... ...+ ..--.++|.+|| .|+++.+
T Consensus 176 l~~~-p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl-----~~~~----~QpEGIa~d~~G-~LYIvsE 240 (248)
T PF06977_consen 176 LSYD-PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL-----SKDI----PQPEGIAFDPDG-NLYIVSE 240 (248)
T ss_dssp EEEE-TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG------SS-------SEEEEEE-TT---EEEEET
T ss_pred eEEc-CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc-----cccc----CCccEEEECCCC-CEEEEcC
Confidence 2222 24567888888888888887665566666544321100 0000 013368999998 5666654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.55 Score=48.45 Aligned_cols=183 Identities=14% Similarity=0.059 Sum_probs=98.7
Q ss_pred eEEEEEc-CCCCEEEEEeCCCeEEEEEccCceE---EEec----CCCcEEEEEEccCCCEEEEEEcC--------CcEEE
Q 004298 24 IKIAEWN-PEKDLLAMATEDSKILLHRFNWQRL---WTIS----PGKSVTSLCWRPDGKAIAVGLED--------GTITL 87 (763)
Q Consensus 24 V~~l~~s-P~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~----~~~~V~~l~wspDG~~Lasg~~D--------g~V~l 87 (763)
...+++. +++.++ ++...+ +.+++.....+ .... +....+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 4556677 665544 455444 45558744433 3332 23467899999999977765543 55777
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc--ccc
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED--SFR 164 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~--~~~ 164 (763)
++.. ++...... .-...+.|+|+|+++.+. +.+ ..+.+..++.......+.. ...+...... ..+
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSN----RRVFIDFPGGPGYPD 187 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEE----EEEEEE-SSSSCEEE
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeeccc------ccceeEEEeccccccceee----eeeEEEcCCCCcCCC
Confidence 7766 55444333 245678999999998664 333 4555555555421111000 0000000000 011
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe-cCCCCEEEEEe
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL-SKDLFHLTVLC 240 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~-SpDg~~Llv~~ 240 (763)
-+ +.+.++++.++....|.|..++-+...+..+.+.. ..+++++| -+|++.|++.+
T Consensus 188 G~--~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~------------------~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 188 GL--AVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPV------------------PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EE--EEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SS------------------SSEEEEEEESTTSSEEEEEE
T ss_pred cc--eEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCC------------------CCEEEEEEECCCCCEEEEEe
Confidence 12 23456677777777788888775544455543321 13668899 47888888875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.007 Score=66.09 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=95.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc--Cc------eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN--WQ------RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~------~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+|..++--.+.+-+++++.|.+|++|.+. |. .-|++. |.++|..+.|-.|-++++++ ||.|.+||.--|
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig 814 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG 814 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccccc
Confidence 46666555566778899999999999982 22 345554 88999999999998888755 899999998777
Q ss_pred eEEEEecc--cCCceeEEEeecC--CCce-eccCCCCCcccCCceeecCCCCCCCC--CCCc-ccCCcccccCCcccccc
Q 004298 94 KLLRSLKS--HTVAVVCLNWEED--AQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGL-VSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 94 ~~~~~l~~--h~~~V~~l~ws~~--~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~-~s~~~~~~~~~~~~~~~ 165 (763)
+.+.+... ..+.+..+..-++ ...+ +.++ ...+++++|.+..-.. +..- ..+.. .....
T Consensus 815 r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs------aeSTVKl~DaRsce~~~E~kVcna~~Pn-------a~~R~ 881 (1034)
T KOG4190|consen 815 RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS------AESTVKLFDARSCEWTCELKVCNAPGPN-------ALTRA 881 (1034)
T ss_pred chhHhhhcCcccCCCceeEecccCcchheeeecc------chhhheeeecccccceeeEEeccCCCCc-------hheeE
Confidence 76654321 1223333333333 2233 3334 5778889888752110 0000 00000 11112
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+ ...+.++.|+.|-++|+|.+.+.+.
T Consensus 882 i--aVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 882 I--AVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred E--EeccCcchhhHHhcCCcEEEEecCC
Confidence 2 2347788999999999999887443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.03 Score=56.34 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=75.3
Q ss_pred ccCCCEEEEEEcCCcEEEEEccCC-eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc
Q 004298 70 RPDGKAIAVGLEDGTITLHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL 148 (763)
Q Consensus 70 spDG~~Lasg~~Dg~V~lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~ 148 (763)
+--+..+++|+.||.+.+.+.++- ...+++..-...-.+......+.++.++.-.... .-+..+.|+.++...-.+..
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n-~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN-AQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe-eccceeeecccccccccccc
Confidence 445678999999999999998751 1222232222222233344455555554311111 12334556666543322222
Q ss_pred ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEE
Q 004298 149 VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVA 228 (763)
Q Consensus 149 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~ 228 (763)
..... +..++..+ .+.+++++|+.||.+-+|+.+.. ..+.. .++.+.++|..+-
T Consensus 177 ~~~~~---------v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~---~~p~S-------------~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 177 KALDA---------VTALCSHP-AQQHLVCCGTDDGIVGLWDARNV---AMPVS-------------LLKAHKAEIWEVH 230 (319)
T ss_pred ccccc---------chhhhCCc-ccccEEEEecCCCeEEEEEcccc---cchHH-------------HHHHhhhhhhhee
Confidence 22111 11222222 34579999999999999986543 22111 1222234555666
Q ss_pred ecC-CCCEEEEEeecC
Q 004298 229 LSK-DLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~Sp-Dg~~Llv~~~d~ 243 (763)
|.| ++.+|+++++|+
T Consensus 231 FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDG 246 (319)
T ss_pred ccCCCchheeEecCCC
Confidence 665 455666665554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.039 Score=60.74 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=112.1
Q ss_pred cCCCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecC---------------CC---cEEEEEEccCCCE-
Q 004298 16 FDKPVASQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISP---------------GK---SVTSLCWRPDGKA- 75 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~---------------~~---~V~~l~wspDG~~- 75 (763)
++....+.|.++++..-++ +|+.+. +.++|+|-+..-|+.... ++ +-..+-...+.++
T Consensus 271 f~d~s~~~i~sl~~~a~~NS~Lvv~~--~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnli 348 (644)
T KOG2395|consen 271 FEDESEGGIGSLDEGALDNSFLVVGY--GNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLI 348 (644)
T ss_pred hhHhhhcccchhhhcccCCceEEecc--cceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceE
Confidence 3334445678888876444 454443 337777765443433110 11 1113334445543
Q ss_pred EEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCC-CCCCcccCCc
Q 004298 76 IAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDT 153 (763)
Q Consensus 76 Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~ 153 (763)
+..|..-..++-.|++.|+++...+.|.. |+-+.+.|+...- .+.........+..+.-||++-.-. .+.- ..++
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~-~q~k- 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV-VQSK- 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee-eecc-
Confidence 45566667889999999999999988765 8888888886431 1122234445688888898874211 1100 0000
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
.+.. ...+.++. ...+ -++++|+.+|.|++|+- ++.-.-+. ++. ...+|..+..+.||
T Consensus 426 qy~~--k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdr----i~~~AKTA----lPg---------LG~~I~hVdvtadG 483 (644)
T KOG2395|consen 426 QYST--KNNFSCFA--TTES-GYIVVGSLKGDIRLYDR----IGRRAKTA----LPG---------LGDAIKHVDVTADG 483 (644)
T ss_pred cccc--ccccceee--ecCC-ceEEEeecCCcEEeehh----hhhhhhhc----ccc---------cCCceeeEEeeccC
Confidence 0110 11111221 1123 47999999999999973 33221111 111 12357888899999
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
++++..|..-
T Consensus 484 Kwil~Tc~ty 493 (644)
T KOG2395|consen 484 KWILATCKTY 493 (644)
T ss_pred cEEEEecccE
Confidence 9999888643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=39.53 Aligned_cols=30 Identities=47% Similarity=0.688 Sum_probs=27.1
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+...|.++.|+|+++++++|+.||.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 566899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.24 Score=44.00 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=63.0
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNP---EK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP---~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|++++++. +| +-|++|+.|..|++|+-. +.++.+.....|++++-... ..|+.|..+|+|-+|+- ...+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeee
Confidence 66777665 33 578899999999999965 57888888888999887766 57999999999999984 3344455
Q ss_pred cccCCceeEEEee
Q 004298 100 KSHTVAVVCLNWE 112 (763)
Q Consensus 100 ~~h~~~V~~l~ws 112 (763)
+. ...++++.+.
T Consensus 78 KS-K~~~~~~~~~ 89 (111)
T PF14783_consen 78 KS-KNQVTSMAFY 89 (111)
T ss_pred cc-CCCeEEEEEE
Confidence 54 3346666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.038 Score=63.63 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=74.1
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccC-----CCEEEEEEcCCcEEEEEcc---CCeEEEEeccc
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPD-----GKAIAVGLEDGTITLHDVE---NGKLLRSLKSH 102 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspD-----G~~Lasg~~Dg~V~lwdve---~g~~~~~l~~h 102 (763)
+|.++|+|+.||+|.|-.+ +.+....+.-+.++.+++++|| .+.+++|+.-| +.++.-. +...+ .+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecC
Confidence 4899999999999999888 6666666777789999999998 56899999988 6666522 22222 34445
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++|.++.|. |.+++-++ |--++++|...
T Consensus 160 eG~I~~i~W~--g~lIAWan-------d~Gv~vyd~~~ 188 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWAN-------DDGVKVYDTPT 188 (846)
T ss_pred ccceEEEEec--CcEEEEec-------CCCcEEEeccc
Confidence 6899999997 66777764 55678887654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.21 Score=54.71 Aligned_cols=58 Identities=19% Similarity=0.429 Sum_probs=41.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-------------------cEEEEEEccCCCEEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-------------------SVTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-------------------~V~~l~wspDG~~Lasg~ 80 (763)
..+....|||+|+.+|.+. ++.|++++..+.....+.+++ .-.++.|||||++||..-
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 4588999999999999886 578999988555555554211 236789999999999865
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.059 Score=55.23 Aligned_cols=91 Identities=19% Similarity=0.298 Sum_probs=67.4
Q ss_pred eeEeecCCCCCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEEc-cCceEEEe--------------------
Q 004298 11 PFQLQFDKPVASQIKIAEWNPEKDLLAMATED-----------SKILLHRF-NWQRLWTI-------------------- 58 (763)
Q Consensus 11 ~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~D-----------g~V~v~~l-~~~~v~~~-------------------- 58 (763)
-+.+.+....|.+|.++.|+|.-++|.+|+.. .-+..||+ ++.+-+..
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 34556677778899999999999988887632 13678887 43321111
Q ss_pred c----------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 59 S----------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 59 ~----------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
. ....|..+..||||+.||+...+|.|.+|++.+-+..+..+.
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 0 134588999999999999999999999999987766665544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.018 Score=66.22 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
-.+++++|+|..-.||.|-.-|.+.+|..+...-.++. |...|..+.|||+|..++++..-|.|.+|...
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34678999999999999999999999999766666654 77889999999999999999999999999865
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.42 Score=50.39 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=71.3
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEEcc--CceEEEec-CCCcEEEEEEccCCCEEEEEEc-----------------
Q 004298 27 AEWNPEKDLLAMAT-----EDSKILLHRFN--WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE----------------- 81 (763)
Q Consensus 27 l~~sP~~~lLA~~s-----~Dg~V~v~~l~--~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~----------------- 81 (763)
-.|||+|++|.+.= ..|.|-||+.. .+++-.+. +|-....+.|.|||+.|+++-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 68999999988753 34789999995 56777776 4555677889999998888741
Q ss_pred -CCcEEEEEccCCeEEEEec----ccCCceeEEEeecCCCceec
Q 004298 82 -DGTITLHDVENGKLLRSLK----SHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 82 -Dg~V~lwdve~g~~~~~l~----~h~~~V~~l~ws~~~~~l~s 120 (763)
+.++...|..+|+++.+.. -|...|.+++|.++|.....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a 179 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA 179 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEE
Confidence 2346677888999887733 37789999999999875544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.16 Score=58.71 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
+.+++++ +..+|.|+.+|.|+++..++..-..+.|... ..+|.++|+|+.||+|.|-.+-+.+..+++.- .
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~ 112 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-K 112 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-C
Confidence 5556665 6789999999999999988775222233332 66899999999999999999999888887754 5
Q ss_pred CceeEEEeecC-----CCceeccC
Q 004298 104 VAVVCLNWEED-----AQPSKNDF 122 (763)
Q Consensus 104 ~~V~~l~ws~~-----~~~l~s~s 122 (763)
.++.+++++|+ .+.+++|+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG 136 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGG 136 (846)
T ss_pred CcceeEEeccchhhhhhhheeecC
Confidence 79999999998 35667776
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=57.57 Aligned_cols=98 Identities=23% Similarity=0.358 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCEEEEEe-CCC--eEEEEEccCceEEEecCCCcE-EEEEEccCCCEEEEEEcC-C--cEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDS--KILLHRFNWQRLWTISPGKSV-TSLCWRPDGKAIAVGLED-G--TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg--~V~v~~l~~~~v~~~~~~~~V-~~l~wspDG~~Lasg~~D-g--~V~lwdve~g~~~ 96 (763)
-...+|||+|+.+|.+. .|| .|+++++.++.++.+.++..+ +.-.|+|||+.|+..++. | .|.+++.+.+..
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence 34578999998888654 445 477778877777776655433 357899999999888743 3 467777775544
Q ss_pred EEecccCCceeEEEeecCCCceeccC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+......-.+-.|+|||+.++..+
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 44443333333889999999887665
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.13 Score=55.62 Aligned_cols=223 Identities=12% Similarity=0.038 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEc-cCceEEEecCCCcEEEEEEcc-CC---CEEEEEE-cCCcEEEEEccCC--
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRF-NWQRLWTISPGKSVTSLCWRP-DG---KAIAVGL-EDGTITLHDVENG-- 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wsp-DG---~~Lasg~-~Dg~V~lwdve~g-- 93 (763)
-|.+++.+-++-++.+++. |..++++++ +...+--++...-...++|.. .| ..+|++. .+|.+.++|-...
T Consensus 55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 3667788889999999777 999999997 333222222111112233322 22 1455554 7899999996532
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc----ccCCcccccCCcccccceecc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL----VSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~----~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+....-.-|.++|.++.+.+.+....+.. ..|.|..|...+........ ....+....-........++.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD------~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSID------ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred ccceecccccCceEEEEeeccccceeecc------ccceeEeecCCCcccCccccccccccccchhhcccccccCccceE
Confidence 33444456899999999999998887775 67899999877422111110 001111110001112223345
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeee-eee--cccccccccCCCCCceeeec------------------cceeeEE
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGK-INI--HKFHVAIPNADEQGTCRLLN------------------ASIYKVA 228 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-~~i--~~~~~~~~s~~~~~~~~l~~------------------~~I~~v~ 228 (763)
+++.+..+.+-..|.+|+++.+..-.... ++- ........ ..+.+-+ ..-..+.
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k-----s~y~l~~VelgRRmaverelek~~~~~~~~~~ 283 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK-----SPYGLMHVELGRRMAVERELEKHGSTVGTNAV 283 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc-----cccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence 56777778888899999988643321100 000 00000000 0111100 1234578
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecccccc
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFSK 269 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~ 269 (763)
|...|++|+..+- -++.++.++++...+
T Consensus 284 fdes~~flly~t~-------------~gikvin~~tn~v~r 311 (558)
T KOG0882|consen 284 FDESGNFLLYGTI-------------LGIKVINLDTNTVVR 311 (558)
T ss_pred EcCCCCEEEeecc-------------eeEEEEEeecCeEEE
Confidence 8888999988753 279999999986654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.13 Score=45.71 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=61.2
Q ss_pred EEEEEEcc---CC-CEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 64 VTSLCWRP---DG-KAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 64 V~~l~wsp---DG-~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|+++++.. || +.|++|+.|..|++|+- .+.+..++. .+.|+++.-...+++...-........++..|+|...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeec
Confidence 67777665 44 48999999999999983 477777765 5678888777666544433211222234455555544
Q ss_pred CCCCCCCCcccCCcccccCCcccccceecccC-CCeeEEEEEcCCCcEEE
Q 004298 140 PRIPQMPGLVSGDTGFTDDSEDSFRELANSSH-QRFSILCSGDKDGSICF 188 (763)
Q Consensus 140 ~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~L~sgs~DG~I~l 188 (763)
++... .+. ...... +...-|++|-++|.|-+
T Consensus 79 SK~~~--------~~~----------~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 SKNQV--------TSM----------AFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCe--------EEE----------EEEcCCCCCceEEEEEecCCeEEe
Confidence 32111 111 011111 23357888988998753
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.64 Score=47.96 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEc-cCCCEEEEEEcCCcEEEEEccCCeEEEEecc--
Q 004298 26 IAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWR-PDGKAIAVGLEDGTITLHDVENGKLLRSLKS-- 101 (763)
Q Consensus 26 ~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~ws-pDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~-- 101 (763)
.+.|.+ ++.++++-...+.|+.|+..++....+.... ..++++. ++|++ .++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeeccC
Confidence 578998 7788887778899999999777665554333 6777777 67554 4444444 45569998866544332
Q ss_pred ---cCCceeEEEeecCCCceeccC
Q 004298 102 ---HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 102 ---h~~~V~~l~ws~~~~~l~s~s 122 (763)
.....+.+++.++|.+.++..
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~ 104 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDS 104 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEE
T ss_pred CCcccCCCceEEEcCCCCEEEEec
Confidence 235678899999998766654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.095 Score=56.61 Aligned_cols=195 Identities=12% Similarity=0.026 Sum_probs=112.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec----CCCcEEEEEEccCCCEEEEEEc-CCcEEEEEccCCeEEEEecc
Q 004298 28 EWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS----PGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 28 ~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~----~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+....+++.+++.||.++.|.-.. .-+--+. |-..|.+++-+-||..+++++. |..++++|+++-..+.-++.
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 3444568999999999998888754 2222222 4456788999999999999887 99999999998766544443
Q ss_pred cCCceeEEEeec-CC---CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 102 HTVAVVCLNWEE-DA---QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 102 h~~~V~~l~ws~-~~---~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
. .....+.|.. .| ..++.+. ..++.+.++|......+......-|...+ ......+.++.+
T Consensus 95 ~-~lPg~a~wv~skGd~~s~IAVs~-----~~sg~i~VvD~~~d~~q~~~fkklH~sPV---------~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 95 V-DLPGFAEWVTSKGDKISLIAVSL-----FKSGKIFVVDGFGDFCQDGYFKKLHFSPV---------KKIRYNQAGDSA 159 (558)
T ss_pred c-cCCCceEEecCCCCeeeeEEeec-----ccCCCcEEECCcCCcCccceecccccCce---------EEEEeeccccce
Confidence 1 1222333422 22 1233222 36788888887654322211111111111 112234667789
Q ss_pred EEEcCCCcEEEEEcCc---eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 178 CSGDKDGSICFNIFGI---FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~---~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
++....|.|..|.... |+-..+... ..+...--...-......++.|||+|..+.....|
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~-----~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFE-----LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred eeccccceeEeecCCCcccCcccccccc-----ccccchhhcccccccCccceEEccccCcccccCcc
Confidence 9999999999997542 222222110 00000000000001235678999999999877644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.42 Score=55.13 Aligned_cols=94 Identities=22% Similarity=0.414 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCC------------CEEEEEeCCCeEEEEEc--cCceEEEecCCCcEEEEEEcc---CC-CEEEEEEcCC
Q 004298 22 SQIKIAEWNPEK------------DLLAMATEDSKILLHRF--NWQRLWTISPGKSVTSLCWRP---DG-KAIAVGLEDG 83 (763)
Q Consensus 22 ~~V~~l~~sP~~------------~lLA~~s~Dg~V~v~~l--~~~~v~~~~~~~~V~~l~wsp---DG-~~Lasg~~Dg 83 (763)
..|+.+.|.|-. -+||++...|.|.+|+. ..+..|--.+.+++..++|-| |. .+|++-....
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 469999998731 25677888899999998 344556556788899998876 55 4778888889
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCC
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~ 115 (763)
++.+|+..+|+...++........|+.+.|-.
T Consensus 136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred EEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 99999999999998887766778889988854
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.032 Score=37.50 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=33.5
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
++.+..+..|...|.++.|.+++..+++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS------DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec------CCCeEEEcC
Confidence 456677778889999999999988888888 899999986
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.018 Score=66.47 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEE--cCCcEEEEEcc-CCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGL--EDGTITLHDVE-NGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdve-~g~~~ 96 (763)
..-+|++|+-..+.|++|+..|.|++|+. .|+..-..+ |+..|+.+.=+-||..+.+.+ +.....+|++. ++...
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence 34789999999999999999999999999 676666555 777777777777777655443 22345677764 45555
Q ss_pred EEec
Q 004298 97 RSLK 100 (763)
Q Consensus 97 ~~l~ 100 (763)
|+++
T Consensus 1182 Hsf~ 1185 (1516)
T KOG1832|consen 1182 HSFD 1185 (1516)
T ss_pred cccc
Confidence 5554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.17 Score=60.09 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=84.0
Q ss_pred CCCEEEEE-EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcc
Q 004298 72 DGKAIAVG-LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV 149 (763)
Q Consensus 72 DG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~ 149 (763)
|-++|... .....++-+|++.|+++..++.|... .-..+.|+.++- .+......+..+..+..||++-...++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-S 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-c
Confidence 34444443 35688999999999999999887643 233455554321 11112233346788888998853222211 0
Q ss_pred cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe
Q 004298 150 SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL 229 (763)
Q Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~ 229 (763)
.. ..+. ....+.++ +...+ -.+|+|+.+|.|++|+ .+|.- ....++.. ..+|..+..
T Consensus 570 ~~-k~Y~--~~~~Fs~~--aTt~~-G~iavgs~~G~IRLyd----~~g~~----AKT~lp~l---------G~pI~~iDv 626 (794)
T PF08553_consen 570 QS-KQYS--SKNNFSCF--ATTED-GYIAVGSNKGDIRLYD----RLGKR----AKTALPGL---------GDPIIGIDV 626 (794)
T ss_pred cc-cccc--cCCCceEE--EecCC-ceEEEEeCCCcEEeec----ccchh----hhhcCCCC---------CCCeeEEEe
Confidence 00 0111 11112222 12233 4799999999999997 23321 11112211 247889999
Q ss_pred cCCCCEEEEEeecC
Q 004298 230 SKDLFHLTVLCSGQ 243 (763)
Q Consensus 230 SpDg~~Llv~~~d~ 243 (763)
|.||+++++.|..-
T Consensus 627 t~DGkwilaTc~ty 640 (794)
T PF08553_consen 627 TADGKWILATCKTY 640 (794)
T ss_pred cCCCcEEEEeecce
Confidence 99999999998754
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.26 Score=57.49 Aligned_cols=160 Identities=13% Similarity=0.121 Sum_probs=86.3
Q ss_pred EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCC
Q 004298 67 LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQM 145 (763)
Q Consensus 67 l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l 145 (763)
-+|++.+..++.|+.+|.|.+.+- .-+.++.++.+...|...-|.-++ .++++-+.+.-+ ....+++|+..+.-..-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~-np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG-NPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCC-CceEEEEecccccCCCC
Confidence 468999999999999999998883 355567888877774444455555 455554422111 12268999887531111
Q ss_pred -CCcccCCcccc-cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-ee-eeeecccccccccCCCCCceeeec
Q 004298 146 -PGLVSGDTGFT-DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IG-KINIHKFHVAIPNADEQGTCRLLN 221 (763)
Q Consensus 146 -~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig-~~~i~~~~~~~~s~~~~~~~~l~~ 221 (763)
|.-...+..+. ..............+.+.+.+|+|-.||.|..+--+... .| ++... . --.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-------~--------~~~ 171 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-------H--------RGK 171 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-------c--------cCC
Confidence 11110011110 000011111122234557889999999999987422211 01 11000 0 011
Q ss_pred cceeeEEecCCCCE-EEEEeecC
Q 004298 222 ASIYKVALSKDLFH-LTVLCSGQ 243 (763)
Q Consensus 222 ~~I~~v~~SpDg~~-Llv~~~d~ 243 (763)
.+|+.+++-.|++. ++++++..
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~ 194 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQ 194 (933)
T ss_pred CCceeeEEecCCceeEEEEecce
Confidence 46888888888887 45555543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.082 Score=56.40 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 60 PGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 60 ~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
++..|..++|+|... ++..++.+.+|+|.|+++..++..+..| ..+++++|.-|....+-++ ...|.+.++|+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaG-----l~nG~VlvyD~ 265 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAG-----LQNGMVLVYDM 265 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEe-----ccCceEEEEEc
Confidence 456799999999777 7888999999999999999999988887 8999999998886554443 27899999998
Q ss_pred CCC
Q 004298 139 APR 141 (763)
Q Consensus 139 ~~~ 141 (763)
+.+
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 864
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.062 Score=40.05 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=30.1
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
...|.+++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.33 Score=51.14 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEeCCCe-EEEEEc-cCceEEEecCC-Cc--EEEEEEccCCCEEEEEE-----cCCcEEE
Q 004298 19 PVASQIKIAEWNP-EKDLLAMATEDSK-ILLHRF-NWQRLWTISPG-KS--VTSLCWRPDGKAIAVGL-----EDGTITL 87 (763)
Q Consensus 19 ~~~~~V~~l~~sP-~~~lLA~~s~Dg~-V~v~~l-~~~~v~~~~~~-~~--V~~l~wspDG~~Lasg~-----~Dg~V~l 87 (763)
++|.+...++.+| ....+|.+-.-|+ ..+|+. +++....+... +. --.-+|||||++|.+.- ..|.|-|
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence 5788899999999 4567777777775 678888 56555555422 21 12478999999998864 4578999
Q ss_pred EEcc-CCeEEEEecccCCceeEEEeecCCCceeccCCC
Q 004298 88 HDVE-NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGN 124 (763)
Q Consensus 88 wdve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~ 124 (763)
||.. +-+.+..+..|.-.-..+.|.|||+.++.+.+.
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 9998 556777888887777889999999776665443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.74 Score=46.86 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=53.4
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEe-cCC----CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTI-SPG----KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~-~~~----~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~ 103 (763)
.++.+.+++.++.|..++. +|+.+|.. ... ..........+++.++++..+|.|..+|.++|+.+.....+.
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 4566677778889999996 99999995 321 122333344458899999999999999999999988876643
|
... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.37 Score=55.52 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=60.0
Q ss_pred CeEEEEEc-c-----CceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeE------------EEEecccC
Q 004298 43 SKILLHRF-N-----WQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKL------------LRSLKSHT 103 (763)
Q Consensus 43 g~V~v~~l-~-----~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~------------~~~l~~h~ 103 (763)
+.|.+.+. + .+.+..+.-++....+.++|||+++.+++ .+++|.++|+++.+. ..+... .
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-G 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-G 374 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-C
Confidence 34555555 2 23344455667788999999999887776 699999999987552 333332 2
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..-...+|.++|....|.. .|..+--|++..
T Consensus 375 lGPLHTaFDg~G~aytslf------~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLF------LDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEe------ecceeEEEehHH
Confidence 2345677888876555443 577777787543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.12 Score=56.69 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=63.6
Q ss_pred cCCCCEEEEEe---------CCCeEEEEEccCceEEEecCC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 30 NPEKDLLAMAT---------EDSKILLHRFNWQRLWTISPG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 30 sP~~~lLA~~s---------~Dg~V~v~~l~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|||+++++... ..+.+.||+++.+.+..+... ..+....|+|||+.+|... ++.|.+++..+++.. .+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-Ee
Confidence 68888877743 245788899977777777654 6788999999999999886 578999998777443 22
Q ss_pred ccc------------------CCceeEEEeecCCCceeccC
Q 004298 100 KSH------------------TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 100 ~~h------------------~~~V~~l~ws~~~~~l~s~s 122 (763)
+.. -+.-..+.|+||++.++...
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 211 12235789999999887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.28 Score=58.34 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=74.8
Q ss_pred cccceeEeecCCCCCCCeEEEEEcCC-------CCEEEEEeCCCeEEEEEc--cCce-EEE----ecCCCcEEEEEEccC
Q 004298 7 MRVLPFQLQFDKPVASQIKIAEWNPE-------KDLLAMATEDSKILLHRF--NWQR-LWT----ISPGKSVTSLCWRPD 72 (763)
Q Consensus 7 ~~~~~~~~~~~k~~~~~V~~l~~sP~-------~~lLA~~s~Dg~V~v~~l--~~~~-v~~----~~~~~~V~~l~wspD 72 (763)
.++.+-.|...+..| | ..+.|+ .....+|-.+..+..|+. .+.+ ++. +..+...+|++=+.+
T Consensus 513 ~GKVV~eW~~~~~~~--v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~ 588 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIP--V--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED 588 (794)
T ss_pred CCcEEEEeecCCCcc--e--eEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC
Confidence 344444555555432 3 445553 234566777888988887 4544 332 225567889988888
Q ss_pred CCEEEEEEcCCcEEEEEccCCeE-EEEecccCCceeEEEeecCCCceeccC
Q 004298 73 GKAIAVGLEDGTITLHDVENGKL-LRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 73 G~~Lasg~~Dg~V~lwdve~g~~-~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
| +||+|+.+|.||+||- .|+. ...+.+-..+|.+|..+.||++++..+
T Consensus 589 G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 589 G-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred c-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 8 7999999999999994 4443 334666678999999999999876544
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.3 Score=47.89 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCEEEEEeC---------C-CeEEEEEccCc-----eEE---EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 33 KDLLAMATE---------D-SKILLHRFNWQ-----RLW---TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 33 ~~lLA~~s~---------D-g~V~v~~l~~~-----~v~---~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..++++|+. . |.|.++++... ++. .....+.|++++-- +|+ |++|. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 578888763 2 88999999542 333 23356778888754 444 44444 5899999998877
Q ss_pred -EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeec--CCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 95 -LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF--PPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 95 -~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w--d~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
....-.. ....++++... +.+++.|. ..+.+.++ +..+. .+... +.+.. ...+ ....+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD------~~~sv~~~~~~~~~~--~l~~v-a~d~~-----~~~v--~~~~~ 180 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGD------AMKSVSLLRYDEENN--KLILV-ARDYQ-----PRWV--TAAEF 180 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEE------SSSSEEEEEEETTTE---EEEE-EEESS------BEE--EEEEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEE------cccCEEEEEEEccCC--EEEEE-EecCC-----CccE--EEEEE
Confidence 5443222 23466666665 44666664 34555554 33211 11000 00000 0001 11122
Q ss_pred CCCeeEEEEEcCCCcEEEEEcC
Q 004298 171 HQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
-.+.+.+++++.+|.+.++.+.
T Consensus 181 l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 181 LVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCcEEEEEcCCCeEEEEEEC
Confidence 2122488999999999998654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=3 Score=42.47 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=81.4
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC
Q 004298 27 AEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV 104 (763)
Q Consensus 27 l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~ 104 (763)
+..+|+. .++..|+..+.+.--+. .|+.+|...-+.++.+-+.- -|.+++.|+..|.+++.++.+|.....+... .
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-E 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-h
Confidence 4445544 67778899999888888 88899998877777654443 6778999999999999999999877776543 2
Q ss_pred cee-EEEeecCCCceeccCCCCCcccCCceeecCCCCC
Q 004298 105 AVV-CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPR 141 (763)
Q Consensus 105 ~V~-~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~ 141 (763)
.|. .....+++..+..++ .|++....|...+
T Consensus 94 ~vk~~a~~d~~~glIycgs------hd~~~yalD~~~~ 125 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGS------HDGNFYALDPKTY 125 (354)
T ss_pred hhccceEEcCCCceEEEec------CCCcEEEeccccc
Confidence 333 234567788888888 8999988888764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.21 Score=57.00 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEEe----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWTI----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~~----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
.+..+..|++..++|.|+..|.|.|+-++. + .++.. .|+..|+|++|++||+.+.+|..-|+|.+..+.+..
T Consensus 78 ~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 78 ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred eEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhh
Confidence 356677899999999999999999999832 2 22221 257789999999999999999999999988877621
Q ss_pred ----EEEEecccCCceeEEEeec
Q 004298 95 ----LLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 95 ----~~~~l~~h~~~V~~l~ws~ 113 (763)
..+.+-...+.|..+....
T Consensus 158 ~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 158 AFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred hhccccceeeccCcceEEeeccc
Confidence 1122223356677776653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.37 Score=53.25 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=65.5
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-ceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~~l~ 110 (763)
++.+.+++.+|.+..++. +|+.+|....... ... ..++..+.+++.||.+..+|..+|+.+........ ......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 456777888999999999 8899998864321 111 23567888888999999999999998766532111 122222
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
. .+..+..++ .++.+.++|..+
T Consensus 318 i--~g~~l~~~~------~~G~l~~~d~~t 339 (377)
T TIGR03300 318 V--VGGYLVVGD------FEGYLHWLSRED 339 (377)
T ss_pred E--ECCEEEEEe------CCCEEEEEECCC
Confidence 2 244555555 688888888654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.24 Score=57.91 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCEEEEEe------CCC--eEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcC------------
Q 004298 23 QIKIAEWNPEKDLLAMAT------EDS--KILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLED------------ 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s------~Dg--~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D------------ 82 (763)
.+...+.||+|+.+|... .|. .|++++..++. ..+..+...+.-.|+|||+.|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 367889999999988766 243 45555553332 333345568889999999988777533
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+.+.+++.++... .....|..+.|+|||..++...
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 233333444333322 2245799999999999876643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.74 Score=51.84 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=69.4
Q ss_pred cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeec-CCCCC
Q 004298 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF-PPAPR 141 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w-d~~~~ 141 (763)
....+.++|+|+++++ +.||.-.|+.....+... .+.-....|.+.+++.+-. ..+++.++ +....
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~-------~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLE-------SSSTIKIYKNFKNE 100 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE--------TTS-EEEEETTEE-
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEE-------CCCeEEEEEcCccc
Confidence 4688999999999999 778888888854333322 1344567898866654433 35667774 33211
Q ss_pred C-CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceee
Q 004298 142 I-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRL 219 (763)
Q Consensus 142 ~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l 219 (763)
. ..+.. ......+. . |.+|...+ ++.|.+|+.... .+.++++
T Consensus 101 ~~k~i~~------------~~~~~~If----~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~v------------------ 144 (443)
T PF04053_consen 101 VVKSIKL------------PFSVEKIF----G-GNLLGVKS-SDFICFYDWETGKLIRRIDV------------------ 144 (443)
T ss_dssp TT-----------------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS------------------
T ss_pred cceEEcC------------CcccceEE----c-CcEEEEEC-CCCEEEEEhhHcceeeEEec------------------
Confidence 1 00000 00111121 1 55666655 448999986643 3444432
Q ss_pred eccceeeEEecCCCCEEEEEeecC
Q 004298 220 LNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 220 ~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|..+.||++|+++++++.+.
T Consensus 145 --~~vk~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 145 --SAVKYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp ---E-EEEEE-TTSSEEEEE-S-S
T ss_pred --CCCcEEEEECCCCEEEEEeCCe
Confidence 1367899999999999998776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.43 Score=56.02 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEc---------CCcEEEEEcc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE---------DGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~---------Dg~V~lwdve 91 (763)
+|+-+.- +++++.+|...|+|.+-+. +.+.+.++. |.+.|..+ .-.|+.|++++- |..|++||++
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhh
Confidence 4665654 4788899999999999999 455666665 77767654 557788877762 6679999999
Q ss_pred CCeEEEEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.-+.+.-+..+.++ .-+.|.|.- ..++.++ ..|...+-|...-..+.. +. -.+......+ ..++.
T Consensus 255 mmral~PI~~~~~P-~flrf~Psl~t~~~V~S------~sGq~q~vd~~~lsNP~~----~~-~~v~p~~s~i--~~fDi 320 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS------QSGQFQFVDTATLSNPPA----GV-KMVNPNGSGI--SAFDI 320 (1118)
T ss_pred hhhccCCcccccCc-hhhhhcccccceEEEEe------cccceeeccccccCCCcc----ce-eEEccCCCcc--eeEEe
Confidence 87766655444333 445666643 2233333 345555555322100000 00 0000001112 23445
Q ss_pred CCCeeEEEEEcCCCcEEEEE
Q 004298 171 HQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~ 190 (763)
+++++.|+.|..+|.|++|.
T Consensus 321 Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCceEEEecccCcEeeec
Confidence 67888999999999999995
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=12 Score=38.36 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEE-EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTS-LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~-l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
-|++++.|...|.+++... +|.++|.+..-+.|.+ -...+||..|-.|+.|+..+..|..+..++.+.+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 5788999999999999998 7779999875555433 34578999999999999999999999888887654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.41 Score=52.89 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV 106 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V 106 (763)
.++.+.+++.+|.|..++. +|+.+|.... +....+... .|..+++++.+|.|+++|..+|+.+.+++.+...+
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 4567777888999999999 7889998742 222222222 56789999999999999999999999887665443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.7 Score=50.93 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCe-EEEEEc-cCceEEEec---------CCCcEEEEEEccCCCEEEEEEcCCcEEEE---E
Q 004298 24 IKIAEWNPEKDLLAMATEDSK-ILLHRF-NWQRLWTIS---------PGKSVTSLCWRPDGKAIAVGLEDGTITLH---D 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~-V~v~~l-~~~~v~~~~---------~~~~V~~l~wspDG~~Lasg~~Dg~V~lw---d 89 (763)
.+...|+|+|+.+++...... +++.+- ....+|.+. .+..|..+.|||||+.+|... +|.|.+- .
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 667899999998888764423 333332 122444221 245799999999999998876 5788773 3
Q ss_pred ccCCeE-E---EEecc-cCCceeEEEeecCCCceec
Q 004298 90 VENGKL-L---RSLKS-HTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 90 ve~g~~-~---~~l~~-h~~~V~~l~ws~~~~~l~s 120 (763)
...|+. + +.+.. -...+..+.|..++.+++.
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEEEE
Confidence 334541 1 11222 2234688999999886543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.49 Score=47.26 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=69.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCc-eEEEec-CCC-cEEE-EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-C
Q 004298 30 NPEKDLLAMATEDSKILLHRFNWQ-RLWTIS-PGK-SVTS-LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-V 104 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~~~-~~~-~V~~-l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~ 104 (763)
......+++|+.+|.|.+|..+.. ...... .+. .|.+ |.--.++.+..+++.||.|+.|++.-++.+.....|+ .
T Consensus 67 ~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 67 VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 334577889999999999888621 111111 122 2222 2223366688999999999999999888887777776 5
Q ss_pred ceeEEEeecCCCceecc--CCCCCcccCCceeecCCCC
Q 004298 105 AVVCLNWEEDAQPSKND--FGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 105 ~V~~l~ws~~~~~l~s~--s~~~~~~~d~~i~~wd~~~ 140 (763)
++.....+..+.+++.. | .|..+++|++.+
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S------~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTS------HDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccc------cchhhhhcchhh
Confidence 55555555555555554 4 688889998875
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.43 E-value=15 Score=38.49 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEE-ccCceEEEecC-C-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHR-FNWQRLWTISP-G-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~-l~~~~v~~~~~-~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|.++.|+|+.+.|.+..+...-.|+= .+|+.+.++.- + +...+|.|.-+|++.++--.++.+.++.+..+.....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 3489999999998877777666554544 48888888762 1 3346788999999988888999999998875532221
Q ss_pred e-----c----cc-CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccC-CcccccCCccccccee
Q 004298 99 L-----K----SH-TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSG-DTGFTDDSEDSFRELA 167 (763)
Q Consensus 99 l-----~----~h-~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~-~~~~~~~~~~~~~~~~ 167 (763)
+ + .+ +.....++|.|....+...- +-+-++++........+..+... .+.. ..--...++
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK------Er~P~~I~~~~~~~~~l~~~~~~~~~~~---~~~f~~DvS 236 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK------ERNPIGIFEVTQSPSSLSVHASLDPTAD---RDLFVLDVS 236 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEE------ccCCcEEEEEecCCcccccccccCcccc---cceEeeccc
Confidence 1 1 12 45677899999876555443 34444444332111111111110 0000 000011111
Q ss_pred -ccc-CCCeeEEEEEcCCCcEEEEEcCceeeeeeeec
Q 004298 168 -NSS-HQRFSILCSGDKDGSICFNIFGIFPIGKINIH 202 (763)
Q Consensus 168 -~~~-~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~ 202 (763)
..+ ...+++|+.+.+++.+.-.+...-+++.+.++
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~ 273 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLT 273 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEec
Confidence 111 23567888888888877666554455555443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.45 Score=52.82 Aligned_cols=87 Identities=31% Similarity=0.463 Sum_probs=64.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EEc--c------CceEEEec----CCCcEEEEEEc-----------cCCCEEEEE
Q 004298 26 IAEWNPEKDLLAMATEDSKILL---HRF--N------WQRLWTIS----PGKSVTSLCWR-----------PDGKAIAVG 79 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v---~~l--~------~~~v~~~~----~~~~V~~l~ws-----------pDG~~Lasg 79 (763)
.++.+|+++++|.+..+.-+.+ |+. . ....|... ++.+|+++.|- ||...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988776655 422 1 11233322 33678877764 456799999
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeec
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~ 113 (763)
..+|.|++|. ++|..+..-.-|..+|..|....
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999 57988887778899999988754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.9 Score=50.74 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-----CceEE-EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-----WQRLW-TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-----~~~v~-~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
|.++.+++.|.+-..+|+|-.+|.|..++-+ |.+.- ...-+.+|+++++..||+..........|.+|.+....
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 4568899999999999999999999988852 22222 22245789999999999986666667889999998433
Q ss_pred E-EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 L-LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~-~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+ ...+..|.....|-++++....++.++ +..+.+|+...
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~-------~e~l~fY~sd~ 244 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAG-------SEFLYFYDSDG 244 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEec-------CceEEEEcCCC
Confidence 2 444777788899999987666455543 45677777653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.65 Score=47.24 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=52.1
Q ss_pred CCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 31 PEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 31 P~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+++..+.+++.++.|..|+. +|+.+|.......+.... ..++..+.++..++.+..+|.++|+.+.+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 35667777789999999998 999999998544322222 235567777778999999999999999884
|
... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.42 Score=51.21 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEcc-CceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEEEEccCCeE-EEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRFN-WQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITLHDVENGKL-LRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~-~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdve~g~~-~~~ 98 (763)
.|..++|||..+ ++..++-+..|.|.++. ...+....-...+++.+|.-|. .+|..|-.+|.|.+||++..+- +..
T Consensus 195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e 274 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLME 274 (463)
T ss_pred hhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhh
Confidence 489999999887 78889999999999994 3444555556889999999865 4777778999999999985432 222
Q ss_pred ecc--cCCceeEEEeec
Q 004298 99 LKS--HTVAVVCLNWEE 113 (763)
Q Consensus 99 l~~--h~~~V~~l~ws~ 113 (763)
+.+ ...+|..++..+
T Consensus 275 ~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 275 LVANVTINPVHKIAPVQ 291 (463)
T ss_pred hhhhhccCcceeecccC
Confidence 221 134566655443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.56 E-value=18 Score=40.13 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred EEEEEcCCCCE-EEEEeCCCeEEEEEccCceEEE-ecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEEEEe
Q 004298 25 KIAEWNPEKDL-LAMATEDSKILLHRFNWQRLWT-ISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLLRSL 99 (763)
Q Consensus 25 ~~l~~sP~~~l-LA~~s~Dg~V~v~~l~~~~v~~-~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~~~l 99 (763)
..++.+|.+.. .+....++.|.+.+....++.. +..+.....++|+|+|+.+.++.. +++|.+.|..+++.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 46788888874 4455556889999975555544 445667789999999998877765 789999999999998886
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..-..+ ..+.+.|+|..+.... ..++.+.+.|...
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~-----~~~~~v~vi~~~~ 191 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTN-----SDDNTVSVIDTSG 191 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEe-----cCCCeEEEEeCCC
Confidence 654445 8899999998655443 2577777777543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.5 Score=46.97 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce--------------------------EEEec-----------------
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR--------------------------LWTIS----------------- 59 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~--------------------------v~~~~----------------- 59 (763)
.|+.+.|+++.--+|++...|.|.||+....+ +-++.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 38999999999899999999999999982111 11221
Q ss_pred --CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE--ecc------cCCceeEEEee
Q 004298 60 --PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS--LKS------HTVAVVCLNWE 112 (763)
Q Consensus 60 --~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~--l~~------h~~~V~~l~ws 112 (763)
..++|++++.|. =-++|+|+.+|.+.|.|++...+++. +.. ....|+++.|+
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 024699999974 45999999999999999998887766 222 23468889887
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.61 Score=49.85 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC----------eEEEEEc-cCceEEEecCCCcEEEEEEccCCC-EEEEE-EcCCcEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDS----------KILLHRF-NWQRLWTISPGKSVTSLCWRPDGK-AIAVG-LEDGTITL 87 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg----------~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~-~Lasg-~~Dg~V~l 87 (763)
|++-..+++++..+.|.+....| .|+++++ +++++..+.-+..+.+|..+.|.+ .|... ..++.+.+
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 34555678887665444432211 6888888 788888887666788999999888 44333 46899999
Q ss_pred EEccCCeEEEEecc
Q 004298 88 HDVENGKLLRSLKS 101 (763)
Q Consensus 88 wdve~g~~~~~l~~ 101 (763)
||..+|+.++++..
T Consensus 317 ~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 317 YDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT--EEEEE--
T ss_pred EeCcCCcEEeehhc
Confidence 99999999999864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.53 Score=55.04 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+....+|++|+-+.++|++|+-.|.|+++++.+|....+..+|+++|+.+.=+.+|....+.+. +...-.-+|+..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss----~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS----SSSPLSALWDAS 1175 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecc----ccCchHHHhccc
Confidence 4567899999999999999999999999999999999999999999999998888876655431 122345678766
Q ss_pred C
Q 004298 140 P 140 (763)
Q Consensus 140 ~ 140 (763)
.
T Consensus 1176 s 1176 (1516)
T KOG1832|consen 1176 S 1176 (1516)
T ss_pred c
Confidence 5
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.96 E-value=26 Score=42.06 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=57.5
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCc---------e-----EEEe-------cCCCcEEEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQ---------R-----LWTI-------SPGKSVTSLC 68 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~---------~-----v~~~-------~~~~~V~~l~ 68 (763)
.++....++...|..+..||+|+++|..+..|-+ |-.+ .|. . .+.+ .++..|..+.
T Consensus 75 q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 75 QKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR 153 (717)
T ss_pred ceeecCCCCceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE
Confidence 3444445555689999999999999999987643 3333 111 1 1111 1334789999
Q ss_pred EccC---CCEEEEEEcCCcEEEEEccCC
Q 004298 69 WRPD---GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 69 wspD---G~~Lasg~~Dg~V~lwdve~g 93 (763)
|+|. +..|++=.+|+++|+||+.+.
T Consensus 154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 154 WHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9996 589999999999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.5 Score=48.87 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=75.0
Q ss_pred ccccceeEeecCCCCCCCeEEEEEcCCCC--EE-----EEEeCCCeEEEEEc--cCc-eE-EE----ecCCCcEEEEEEc
Q 004298 6 AMRVLPFQLQFDKPVASQIKIAEWNPEKD--LL-----AMATEDSKILLHRF--NWQ-RL-WT----ISPGKSVTSLCWR 70 (763)
Q Consensus 6 ~~~~~~~~~~~~k~~~~~V~~l~~sP~~~--lL-----A~~s~Dg~V~v~~l--~~~-~v-~~----~~~~~~V~~l~ws 70 (763)
+.++.+-.|.+++. |.-+.+.|+.+ .+ .+|-.+..|.-|+. .+. ++ |. +..+....|.+-.
T Consensus 364 E~GKIVeEWk~~~d----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT 439 (644)
T KOG2395|consen 364 ERGKIVEEWKFEDD----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT 439 (644)
T ss_pred ccceeeeEeeccCC----cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec
Confidence 34455556666666 66777888653 22 23556777777776 333 11 22 2244566777777
Q ss_pred cCCCEEEEEEcCCcEEEEEccCCeEEE-EecccCCceeEEEeecCCCceeccC
Q 004298 71 PDGKAIAVGLEDGTITLHDVENGKLLR-SLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 71 pDG~~Lasg~~Dg~V~lwdve~g~~~~-~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.+| +|++|+.+|.|++||- .+.... -+++-..+|+++..+.+|.++....
T Consensus 440 ~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 440 ESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred CCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 777 8999999999999996 454433 4667778999999999999876543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.51 Score=56.71 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=73.7
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcc--CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 16 FDKPVASQIKIAEWNPEK-DLLAMATEDSKILLHRFN--WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~--~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
++++ .-+.++.|+|.- ...|.+..|+.|.|..++ -+.+-.+.-+..++|++|+|-|+.+++|-.+|++.-|-..
T Consensus 152 ~ek~--vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~- 228 (1405)
T KOG3630|consen 152 FEKP--VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS- 228 (1405)
T ss_pred hccc--cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-
Confidence 4444 347789999976 456677789999777763 2233344456778999999999999999999999888744
Q ss_pred CeEEEEecc---c-CCceeEEEeecCCCceec
Q 004298 93 GKLLRSLKS---H-TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 93 g~~~~~l~~---h-~~~V~~l~ws~~~~~l~s 120 (763)
++....+.. . ...|.|+.|-....++++
T Consensus 229 leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 555544432 1 368999999887766554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.34 E-value=13 Score=43.40 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCEEEEEeCC----------CeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATED----------SKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D----------g~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
..-++.+|-|--||+.-.+ -.|+||+..|+.+..+. |+ .+..+.|+.+.. |++-..||+|++|++.
T Consensus 35 ~~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 35 YVYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCC-CeeeecccCCce-EEEEeccceEEEeecc
Confidence 3445566666666655444 34888888888777664 43 788999998865 5556789999999976
Q ss_pred CCeEEEEe----cccCCceeEEEeecCCCceeccC
Q 004298 92 NGKLLRSL----KSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 ~g~~~~~l----~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+.+... ......|..+.+..+|-.+.+.+
T Consensus 113 -ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~ 146 (829)
T KOG2280|consen 113 -GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS 146 (829)
T ss_pred -hhhhcccccccccccCceeEEEEecCceEEEecC
Confidence 4443331 11223455555555676666554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.24 E-value=20 Score=38.43 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=78.8
Q ss_pred cEEEEEEccCCCEEEEEEc---------CCcEEEEEcc-CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 63 SVTSLCWRPDGKAIAVGLE---------DGTITLHDVE-NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 63 ~V~~l~wspDG~~Lasg~~---------Dg~V~lwdve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
..+.+...|||.+-+..-. -..-.||-+. .|..++.+..+-..-+.|+|+||++.+.... ...+.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD-----T~~~~ 186 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD-----TPANR 186 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe-----CCCCe
Confidence 4567888999986655433 1112455554 5667666666555668899999997665442 03345
Q ss_pred eeecCCCCCCCCCCCcccCCcccc--cCCcccccceecccCCCeeEEEEEcCCC-cEEEEEcCceeeeeeeecccccccc
Q 004298 133 SRFFPPAPRIPQMPGLVSGDTGFT--DDSEDSFRELANSSHQRFSILCSGDKDG-SICFNIFGIFPIGKINIHKFHVAIP 209 (763)
Q Consensus 133 i~~wd~~~~~~~l~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~L~sgs~DG-~I~lw~~~~~~ig~~~i~~~~~~~~ 209 (763)
+.-++........ .+...++ +......+-+ +.+.++++-+++-.+| .|..|.-+...++.+.+..
T Consensus 187 i~r~~~d~~~g~~----~~~~~~~~~~~~~G~PDG~--~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~------ 254 (307)
T COG3386 187 IHRYDLDPATGPI----GGRRGFVDFDEEPGLPDGM--AVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPV------ 254 (307)
T ss_pred EEEEecCcccCcc----CCcceEEEccCCCCCCCce--EEeCCCCEEEecccCCceEEEECCCCcEEEEEECCC------
Confidence 5555443210000 0000011 0000001111 2234555665444444 7888876666666665432
Q ss_pred cCCCCCceeeeccceeeEEe-cCCCCEEEEEeec
Q 004298 210 NADEQGTCRLLNASIYKVAL-SKDLFHLTVLCSG 242 (763)
Q Consensus 210 s~~~~~~~~l~~~~I~~v~~-SpDg~~Llv~~~d 242 (763)
..+++++| .++++.|++.+..
T Consensus 255 ------------~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 255 ------------KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ------------CCCccceEeCCCcCEEEEEecC
Confidence 12345566 4677888887654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.12 Score=58.23 Aligned_cols=107 Identities=18% Similarity=0.245 Sum_probs=72.8
Q ss_pred CeEEEEEcCC-CCEEEEEe----CCCeEEEEEccCc-----eEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 23 QIKIAEWNPE-KDLLAMAT----EDSKILLHRFNWQ-----RLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~sP~-~~lLA~~s----~Dg~V~v~~l~~~-----~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
.+++++|++- .+.||.|- .|..+.||+++.. .-|.+. ......+++|-.|.+.+.+|.....+.++|+
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence 4899999994 57777763 4567889998432 223332 2345678999999999999999999999998
Q ss_pred cC-CeEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCC
Q 004298 91 EN-GKLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 91 e~-g~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
+- ......+ .+..+..+...| .+.++++- .|+.+.+||.
T Consensus 184 Rqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~-------~dg~iAiwD~ 224 (783)
T KOG1008|consen 184 RQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN-------SDGDIAIWDT 224 (783)
T ss_pred hhhhhhhhhh--hhhhcccceecCCCCCceecc-------ccCceeeccc
Confidence 72 1111112 233455666667 45566554 4889999994
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=88.88 E-value=3.9 Score=42.54 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCEEEEEe--CC-CeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE-ccCCeEEE-
Q 004298 23 QIKIAEWNPEKDLLAMAT--ED-SKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD-VENGKLLR- 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~D-g~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd-ve~g~~~~- 97 (763)
.+...+++|+++.+|... .+ ..+++++..+.. .....+..++.-.|+++|...++...++..+++. ..+++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 588899999999888776 33 456666654332 2222566889999999999888888777777774 33343321
Q ss_pred Eeccc--CCceeEEEeecCCCceec
Q 004298 98 SLKSH--TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 98 ~l~~h--~~~V~~l~ws~~~~~l~s 120 (763)
.+... ...|+.+.++|||..++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~ 128 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAV 128 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEE
Confidence 12211 128999999999987654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.8 Score=47.87 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=77.8
Q ss_pred ccCCCEEE-EEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCC
Q 004298 70 RPDGKAIA-VGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 70 spDG~~La-sg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~ 147 (763)
..|..+|. .|+.-..++-+|++-|+++.....|... -+.+.|+..+- .+......+..+..+.-.|++-...++..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 34555544 4556677888999999999999887655 56777765321 11111111112444433444321111110
Q ss_pred c----ccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccc
Q 004298 148 L----VSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNAS 223 (763)
Q Consensus 148 ~----~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~ 223 (763)
. ..+...| +........++++|+..|-|++|+ .+|.-.-+. .+. ....
T Consensus 554 ~esKdY~tKn~F-----------ss~~tTesGyIa~as~kGDirLyD----Rig~rAKta----lP~---------lG~a 605 (776)
T COG5167 554 VESKDYKTKNKF-----------SSGMTTESGYIAAASRKGDIRLYD----RIGKRAKTA----LPG---------LGDA 605 (776)
T ss_pred eeehhccccccc-----------cccccccCceEEEecCCCceeeeh----hhcchhhhc----Ccc---------cccc
Confidence 0 0011111 111122335899999999999996 222211111 111 1134
Q ss_pred eeeEEecCCCCEEEEEeecCc
Q 004298 224 IYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 224 I~~v~~SpDg~~Llv~~~d~l 244 (763)
|..+..+.+|+++++.|..-+
T Consensus 606 Ik~idvta~Gk~ilaTCk~yl 626 (776)
T COG5167 606 IKHIDVTANGKHILATCKNYL 626 (776)
T ss_pred eeeeEeecCCcEEEEeecceE
Confidence 667888999999999997543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.98 E-value=4.6 Score=45.18 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCEEEEEe-CCC----eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCC-----------cEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDS----KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG-----------TIT 86 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg----~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg-----------~V~ 86 (763)
+..+++||+++++|.+- ..| .|+++++ +|+.+-..-.+.....+.|.+||+.|.....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 34688999999999753 333 5889999 554444332222233499999999877665333 378
Q ss_pred EEEccCCeE--EEEecccCCc--eeEEEeecCCCceec
Q 004298 87 LHDVENGKL--LRSLKSHTVA--VVCLNWEEDAQPSKN 120 (763)
Q Consensus 87 lwdve~g~~--~~~l~~h~~~--V~~l~ws~~~~~l~s 120 (763)
.|.+.++.. .-.+...... ...+.++++++++..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i 243 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI 243 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE
Confidence 888776532 2333332222 567888999987653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=4 Score=45.40 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=60.9
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~l~ 110 (763)
++.+.+++.+|.+..++. +|+.+|+...+.. ..+ ..++..+.+++.+|.+..+|.++|+.+.+...-. ....+..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~ 332 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV 332 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE
Confidence 456666778899999998 8899998764332 111 2256678888899999999999998765443211 1111111
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. ++ .+..++ .++.+..+|..+
T Consensus 333 v~-~g-~l~v~~------~~G~l~~ld~~t 354 (394)
T PRK11138 333 LY-NG-YLVVGD------SEGYLHWINRED 354 (394)
T ss_pred EE-CC-EEEEEe------CCCEEEEEECCC
Confidence 11 23 333444 577777777654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.76 E-value=3.6 Score=46.70 Aligned_cols=97 Identities=14% Similarity=0.265 Sum_probs=63.8
Q ss_pred eEEEEEcCCC----CEEEEEeCCCeEEEEEcc----CceEEEec----CCC--c--EEEEEEccCCCEEEEEEcCCcEEE
Q 004298 24 IKIAEWNPEK----DLLAMATEDSKILLHRFN----WQRLWTIS----PGK--S--VTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 24 V~~l~~sP~~----~lLA~~s~Dg~V~v~~l~----~~~v~~~~----~~~--~--V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
|..+.|.|-+ .-+........|.||.+. .+.-|-.. .++ + -.+..|+|....|++-.....-.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 8899999953 233445567789999982 12222221 111 1 245679999989888776655556
Q ss_pred EEcc--CCeEEEEecccCCceeEEEeecCCCceecc
Q 004298 88 HDVE--NGKLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 88 wdve--~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
++++ +.+....+++ .+-|.|.+|.+||+.++.+
T Consensus 139 ~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred eeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEE
Confidence 7765 3445455654 6889999999999877654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.03 E-value=3.6 Score=46.73 Aligned_cols=76 Identities=20% Similarity=0.403 Sum_probs=53.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCceE-EEecCCCcEEEEEEccCCCEEEEEEcCC-cEEEEEcc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--NWQRL-WTISPGKSVTSLCWRPDGKAIAVGLEDG-TITLHDVE 91 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~v-~~~~~~~~V~~l~wspDG~~Lasg~~Dg-~V~lwdve 91 (763)
...++|-=-..+.|+|....|++-+....=.+++. +..++ .+++..+.|.|-||.+||+.|+++-... .-+|||-.
T Consensus 107 i~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 107 IREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 33454433456889999999988766554445555 44444 5677888999999999999988876442 34788843
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=85.18 E-value=9.3 Score=39.72 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc--cCce-EEEec--CC-CcEEEEEEccCCCEEEEEE---cCCcEEEEEcc--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF--NWQR-LWTIS--PG-KSVTSLCWRPDGKAIAVGL---EDGTITLHDVE-- 91 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--~~~~-v~~~~--~~-~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve-- 91 (763)
.+....|+|++.+.+....+....+++. +++. ...+. .. ..|+++++||||..+|.-. .++.|.+-.+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 4677899999888877776777776652 3321 11222 12 2899999999999888776 45778877764
Q ss_pred -CC--e----EEEEecccCCceeEEEeecCCCceeccC
Q 004298 92 -NG--K----LLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 -~g--~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+| . ...........++.+.|.+++.+++.+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 33 1 1112222346899999999998776654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=84.64 E-value=16 Score=39.29 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=69.7
Q ss_pred eecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEe---cCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 14 LQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTI---SPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 14 ~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~---~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
+.++..+++.|.+++-. ++. ++++. .+.|.+|++.... +... ...-.+.++... +.+|++|.....|.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 33444555669888866 334 44443 5889999995444 3322 233456666655 55999999989998885
Q ss_pred ccC-CeEEEEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 90 VEN-GKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 90 ve~-g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
... +..+..+. .....++++.+-+++..++.+. .+|.+.++...+
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEECC
Confidence 543 33333332 2245688888886666666655 678888876543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=84.48 E-value=4.9 Score=44.66 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
++.+..++.+|.+..++. +|+.+|.... +....+... .+..+.++..||.+...|..+|+.+.+.+..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 456666778899988888 7888897652 122222222 2457788999999999999999998877543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=84.42 E-value=9.6 Score=42.70 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=44.3
Q ss_pred CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc-CCceeEEEeecCC
Q 004298 61 GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH-TVAVVCLNWEEDA 115 (763)
Q Consensus 61 ~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h-~~~V~~l~ws~~~ 115 (763)
.+++..++.||+|+++|.-..+|.+.+.+..-.+.+..+... ......|.|+.+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 357999999999999999999999999987766666665543 3577899998654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=11 Score=45.13 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC------CcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATEDS-----KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED------GTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D------g~V~lwdve 91 (763)
+..+.|||++++||.+.+.+ .|++.++ +|..+.....+.. ..++|++||+.|+....+ ..|+.|++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 77789999999999765432 5777777 3432222222222 569999999977776542 367888888
Q ss_pred CC--eEEEEecccCCceeEEEeec-CCCcee
Q 004298 92 NG--KLLRSLKSHTVAVVCLNWEE-DAQPSK 119 (763)
Q Consensus 92 ~g--~~~~~l~~h~~~V~~l~ws~-~~~~l~ 119 (763)
++ +....+........--.|.+ +++++.
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~ 238 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVV 238 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEE
Confidence 77 33333433233333233433 666543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=83.52 E-value=4 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=25.8
Q ss_pred cEEEEEEcc-CC--CEEEEEEcCCcEEEEEccCC
Q 004298 63 SVTSLCWRP-DG--KAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 63 ~V~~l~wsp-DG--~~Lasg~~Dg~V~lwdve~g 93 (763)
.|.++.|+| .+ .+|+.+-.-|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999998 44 58899989999999999854
|
It contains a characteristic DLL sequence motif. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=82.81 E-value=19 Score=37.29 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC----ceEEEec---------CCCcEEEEEEcc-CCCEEEEEEcCCcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW----QRLWTIS---------PGKSVTSLCWRP-DGKAIAVGLEDGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~----~~v~~~~---------~~~~V~~l~wsp-DG~~Lasg~~Dg~V~l 87 (763)
.++-.++|+|.++.|.++-...-..+|.+++ ..+.... .-..+.++.++| .|++++.+..+..+..
T Consensus 118 ~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~ 197 (248)
T PF06977_consen 118 KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLE 197 (248)
T ss_dssp S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEE
Confidence 4589999999988888887777677777754 1111111 223578999999 5677788888999999
Q ss_pred EEccCCeEEEEecccC---------CceeEEEeecCCCceecc
Q 004298 88 HDVENGKLLRSLKSHT---------VAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 88 wdve~g~~~~~l~~h~---------~~V~~l~ws~~~~~l~s~ 121 (763)
+| .+|+.+..+.-.. ...-.|++.++|...+++
T Consensus 198 ~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 198 LD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp E--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99 6688876654322 256789999999876665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=82.52 E-value=35 Score=36.47 Aligned_cols=101 Identities=10% Similarity=0.086 Sum_probs=50.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 18 KPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 18 k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++|+....+....++ ...+++..|. ||+. ++.+-|... ....+..+.-++||++++++..-....-||--..
T Consensus 100 ~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~ 176 (302)
T PF14870_consen 100 SKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT 176 (302)
T ss_dssp TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S
T ss_pred CCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc
Confidence 3445444444443333 3333444554 4555 555566543 3456888989999999999976666667774322
Q ss_pred eEEEEecccCCceeEEEeecCCCceecc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
.-...-+.-...|..|.|.|++.....+
T Consensus 177 ~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 177 TWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp S-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred cceEEccCccceehhceecCCCCEEEEe
Confidence 1222222335799999999998765544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.5 Score=51.63 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=68.9
Q ss_pred cCCCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEccC--ceEEEecCCCcEEE-----------EEEccCCCEEEEE
Q 004298 16 FDKPVASQIKIAEWNP---EKDLLAMATEDSKILLHRFNW--QRLWTISPGKSVTS-----------LCWRPDGKAIAVG 79 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP---~~~lLA~~s~Dg~V~v~~l~~--~~v~~~~~~~~V~~-----------l~wspDG~~Lasg 79 (763)
-..|....+.-+.||| +.-++-.+-.+++|.+...+. +.++.- |+..++. -..||||+.+|.+
T Consensus 175 ~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 175 PITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRS-HSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred ecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHh-cCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 3445556678888998 334444455667776655532 212111 4332211 1279999999999
Q ss_pred EcCCcEEEEEcc-CCe----EEEEecccC-CceeEEEeecCCC---------ceeccCCCCCcccCCceeecCCCC
Q 004298 80 LEDGTITLHDVE-NGK----LLRSLKSHT-VAVVCLNWEEDAQ---------PSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 80 ~~Dg~V~lwdve-~g~----~~~~l~~h~-~~V~~l~ws~~~~---------~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+.||.|+.|.+. +|+ +++..+.|+ .+-.|..+..+.. +.+++. -.++.+++|...+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt-----d~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT-----DVNREEKFWAEAP 324 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc-----cCCcceeEeeccc
Confidence 999999988865 343 556667776 3333433333221 223333 1467788886554
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.42 E-value=35 Score=38.51 Aligned_cols=81 Identities=15% Similarity=0.273 Sum_probs=56.4
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---------------------EEEecCCCcEEEEEEccCC
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---------------------LWTISPGKSVTSLCWRPDG 73 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---------------------v~~~~~~~~V~~l~wspDG 73 (763)
-..++.-.|..+..||.|..+|.++.+|.+.++=. .|.+ +++-++.-.+...+|+|+.
T Consensus 98 P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 98 PINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred cCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCc
Confidence 34455566889999999999999999997655442 2221 1111122246778999976
Q ss_pred ---CEEEEEEcCCcEEEEEccCCeEE
Q 004298 74 ---KAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 74 ---~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..|.+-.+|+.+|+||...-..+
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCcchh
Confidence 68888899999999998654333
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=81.21 E-value=23 Score=37.79 Aligned_cols=99 Identities=14% Similarity=0.246 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEE-ccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHD-VENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd-ve~g~~~~ 97 (763)
+.+..+.-+++|.++|++. .|.+.+-.-+|+..|... ...+|.++.|+||+...+++ ..|.|+.=+ ..+++...
T Consensus 145 gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEEC-cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 4588888899999888764 565543333455555443 45789999999998877755 788887766 22233222
Q ss_pred E----ecccCCceeEEEeecCCCceeccC
Q 004298 98 S----LKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 98 ~----l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
. +....-.+..++|.+++...++|+
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 2 112223578999999888777765
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=80.98 E-value=94 Score=34.24 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=50.2
Q ss_pred CeEEEEEcCCC-CEEEEEeC------CCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEE-----cCCcEEE
Q 004298 23 QIKIAEWNPEK-DLLAMATE------DSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGL-----EDGTITL 87 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~------Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~-----~Dg~V~l 87 (763)
.+..+.|||.. .+|+-|-+ |..|++-+.+|..++.+. .+..+..=-|.|||+.|.--+ .+..|.-
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 46678899966 45555542 335666666777777775 345677788999999776532 2335666
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceec
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s 120 (763)
+|.++++....... ..-....-+++|++++.
T Consensus 269 ~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 269 YDPDTGERRRLMEM--PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp E-TTT--EEEEEEE---SEEEEEE-TTSSEEEE
T ss_pred eCCCCCCceEEEeC--CceeeeEEcCCCCEEEe
Confidence 77888765432221 12334444677776654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.37 E-value=10 Score=39.33 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=63.6
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEEc--cCceEEEec-CCCcEEEEEEccCCCEEEEEEc------C-----------
Q 004298 28 EWNPEKDLLAMATE-----DSKILLHRF--NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE------D----------- 82 (763)
Q Consensus 28 ~~sP~~~lLA~~s~-----Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~------D----------- 82 (763)
.|||+|.+|-..-+ -|.|-|||. ..+++-.+. +|-....+.|.+||+.++++.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 58999988765433 367889998 456676665 6666788999999999988753 1
Q ss_pred -CcEEEEEccCCeEEEEe--c--ccCCceeEEEeecCCCceecc
Q 004298 83 -GTITLHDVENGKLLRSL--K--SHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 83 -g~V~lwdve~g~~~~~l--~--~h~~~V~~l~ws~~~~~l~s~ 121 (763)
-++.+.|..+|+++.+. . .+.-.|.++...+||+....+
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 13455666667665443 2 344577888887777655443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.29 E-value=7.1 Score=27.57 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=25.7
Q ss_pred cCCCEEEEEE-cCCcEEEEEccCCeEEEEecc
Q 004298 71 PDGKAIAVGL-EDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 71 pDG~~Lasg~-~Dg~V~lwdve~g~~~~~l~~ 101 (763)
|||+.|.++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6888777765 689999999999998888765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.04 E-value=13 Score=38.56 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=72.9
Q ss_pred cCCCCCCCeEEEEEcCCCC-EEEEEeCCCe-EEEEEccCc-eEEEec-CCC--cEEEEEEccCCCEEEEEEcC-----Cc
Q 004298 16 FDKPVASQIKIAEWNPEKD-LLAMATEDSK-ILLHRFNWQ-RLWTIS-PGK--SVTSLCWRPDGKAIAVGLED-----GT 84 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~-lLA~~s~Dg~-V~v~~l~~~-~v~~~~-~~~--~V~~l~wspDG~~Lasg~~D-----g~ 84 (763)
+...+|.+...++++|... -+|.+-.-|+ ..+++.++. ....+. ..+ ---.-.|||||.+|...-.| |.
T Consensus 62 ~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 62 FATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred eeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCce
Confidence 3445667788899999764 4566666665 567777443 222222 111 12235799999999776543 77
Q ss_pred EEEEEccCC-eEEEEecccCCceeEEEeecCCCceeccCC
Q 004298 85 ITLHDVENG-KLLRSLKSHTVAVVCLNWEEDAQPSKNDFG 123 (763)
Q Consensus 85 V~lwdve~g-~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~ 123 (763)
|-|||...+ ..+..+..|.-.-..+.|.+||+.++...+
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 999998754 345567788878889999999998877643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 763 | ||||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-05 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 8e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-04 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 7e-04 |
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 763 | |||
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.9 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.9 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.89 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.88 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.87 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.87 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.87 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.87 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.87 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.87 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.87 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.86 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.86 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.86 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.86 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.85 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.85 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.85 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.85 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.85 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.85 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.85 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.84 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.84 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.83 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.83 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.82 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.82 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.82 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.82 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.82 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.82 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.82 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.81 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.81 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.81 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.81 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.81 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.81 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.8 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.8 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.8 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.8 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.8 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.8 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.8 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.79 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.79 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.79 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.79 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.79 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.78 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.78 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.78 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.78 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.78 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.77 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.77 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.77 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.77 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.77 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.77 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.77 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.77 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.77 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.76 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.75 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.75 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.75 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.75 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.74 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.74 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.74 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.74 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.74 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.74 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.74 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.74 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.73 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.73 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.73 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.73 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.73 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.72 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.72 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.72 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.72 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.72 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.71 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.71 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.71 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.7 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.7 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.7 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.7 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.7 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.7 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.69 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.69 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.69 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.68 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.68 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.66 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.65 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.64 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.64 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.63 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.63 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.62 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.62 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.61 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.6 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.6 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.6 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.58 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.57 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.56 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.56 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.56 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.55 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.55 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.54 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.53 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.51 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.49 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.49 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.37 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.36 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.35 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.35 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.33 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.29 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.29 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.29 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.27 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.27 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.25 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.25 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.25 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.22 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.22 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.21 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.21 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.2 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.17 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.15 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.14 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.13 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.08 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.08 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.06 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.04 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.03 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.01 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.98 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.96 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.93 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.9 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.84 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.77 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.74 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.72 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.69 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.68 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.63 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.62 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.6 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.6 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.57 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.54 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.54 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.53 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.51 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.5 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.5 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.47 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.42 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.4 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.39 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.39 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.34 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.33 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.32 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.29 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.27 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.21 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.2 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.1 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.08 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.05 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.05 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.04 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.04 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.0 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.99 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.88 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.88 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.87 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.85 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.75 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.73 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.71 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.7 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.67 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.66 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.66 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.62 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.41 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.4 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.39 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.35 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.23 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.19 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.18 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.12 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.12 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.86 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.84 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 96.82 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.66 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.59 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.36 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.03 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.9 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 95.87 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.8 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 95.56 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 95.54 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 95.5 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 95.01 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 94.96 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.9 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.81 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 94.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 94.44 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 94.33 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 93.89 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 93.55 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 93.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.47 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 93.09 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 93.05 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.76 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 92.23 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 92.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 92.06 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 91.96 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 91.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 90.28 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 90.2 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 89.78 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 89.29 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 89.11 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 88.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 88.69 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 88.09 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 87.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 87.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 87.14 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 86.99 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 86.26 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 85.54 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 85.04 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 84.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 84.08 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 84.01 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 83.9 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 83.83 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 83.13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 82.83 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 82.69 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 81.89 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 80.95 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 80.34 |
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=214.69 Aligned_cols=205 Identities=12% Similarity=0.117 Sum_probs=160.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.|.+++|+|+++++|+++.||.|++|++ +++.+..+. |...|.+++|+|+|++|++|+.||+|++||+++++.+..+.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 94 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 4999999999999999999999999999 566666665 67789999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-CeeEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RFSILCS 179 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L~s 179 (763)
+|...|.+++|+|++.++++++ .|+++++||...... +.....++...+ ..+ .+++ +..+|++
T Consensus 95 ~h~~~v~~~~~~~~~~~l~sgs------~D~~v~lWd~~~~~~-~~~~~~~h~~~v-------~~v--~~~p~~~~~l~s 158 (304)
T 2ynn_A 95 AHPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWA-LEQTFEGHEHFV-------MCV--AFNPKDPSTFAS 158 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE------TTSCEEEEEGGGTTE-EEEEECCCCSCE-------EEE--EECTTCTTEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEC------CCCeEEEEECCCCcc-hhhhhcccCCcE-------EEE--EECCCCCCEEEE
Confidence 9999999999999999999998 899999999865311 111122333222 223 3344 4578999
Q ss_pred EcCCCcEEEEEcCcee-eee-----------eeeccc--ccccccCCCCCceeeec--------------cceeeEEecC
Q 004298 180 GDKDGSICFNIFGIFP-IGK-----------INIHKF--HVAIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-ig~-----------~~i~~~--~~~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
|+.||+|++|+.+... ... +..... .....+++.++.+++|+ ..|..++|+|
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 9999999999875321 111 111110 11245777899999997 4688899999
Q ss_pred CCCEEEEEeecC
Q 004298 232 DLFHLTVLCSGQ 243 (763)
Q Consensus 232 Dg~~Llv~~~d~ 243 (763)
++..|+.++.|+
T Consensus 239 ~~~~l~s~s~Dg 250 (304)
T 2ynn_A 239 TLPIIISGSEDG 250 (304)
T ss_dssp SSSEEEEEETTS
T ss_pred CCCEEEEEcCCC
Confidence 999999888877
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=216.01 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=158.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe-----cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI-----SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~-----~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|.+++|+|++ .+++|+.||+|+||++ +++.+... .|...|++++|+|||++|++|+.||+|++||+++++.+
T Consensus 84 ~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 84 GVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 39999999985 6779999999999999 45443322 37889999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+.+.+|...|+++.|++++. .+++++ .|+++++||.+..... +... .+ ...+..+.+.+ .+
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~--~~-------~~~~~~~~~~p-~~ 226 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLSCS------EDNRILLWDTRCPKPASQIGCS--AP-------GYLPTSLAWHP-QQ 226 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTSSSCEEECC-------------CCCEEEEEECS-SC
T ss_pred EEEcCcCCceEEEEecCCCCCceeeec------cccccccccccccceeeeeecc--ee-------eccceeeeecC-CC
Confidence 99999999999999999985 578887 8999999998753211 1100 00 01111222221 34
Q ss_pred eeEEEEEcCCCcEEEEEcCce-eeeeeeeccc----------c-cccccCCCCCceeeec-------------cceeeEE
Q 004298 174 FSILCSGDKDGSICFNIFGIF-PIGKINIHKF----------H-VAIPNADEQGTCRLLN-------------ASIYKVA 228 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~----------~-~~~~s~~~~~~~~l~~-------------~~I~~v~ 228 (763)
.+++++|+.||+|++|+.... .+.++..|.. . .-+.+++.|+.+++|+ ..|.+++
T Consensus 227 ~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~ 306 (344)
T 4gqb_B 227 SEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 306 (344)
T ss_dssp TTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEE
T ss_pred CcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEE
Confidence 578999999999999987543 2222222211 1 1134677899999997 4689999
Q ss_pred ecCCCCEEEEEee-cCccccccCCCCCCcEEEEEeeccccc
Q 004298 229 LSKDLFHLTVLCS-GQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 229 ~SpDg~~Llv~~~-d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
||||++.+++.+. |+ .|.++.++..-+.
T Consensus 307 ~sp~~~~llas~s~D~------------~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDH------------QVVHHVVPTEPLP 335 (344)
T ss_dssp ECSSSTTEEEEEETTS------------CEEEEECCC----
T ss_pred EeCCCCeEEEEEcCCC------------eEEEEECCCCCCC
Confidence 9999988776544 44 7888877765443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=219.65 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|++.++|+|+.||+|+||++ +++.+..+. |...|++++|+|+|++|++|+.||+|++||+.++++++.+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 45999999999999999999999999999 666666665 7889999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.|+|++..+++++ .|+++++||..... ......++...+ . ...++++++++++
T Consensus 189 ~~h~~~V~~v~~~p~~~~l~s~s------~D~~i~~wd~~~~~--~~~~~~~h~~~v-------~--~~~~~~~g~~l~s 251 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPNGDHIVSAS------RDKTIKMWEVQTGY--CVKTFTGHREWV-------R--MVRPNQDGTLIAS 251 (410)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTTCC--EEEEEECCSSCE-------E--EEEECTTSSEEEE
T ss_pred cCCCCCEEEEEEeCCCCEEEEEe------CCCeEEEEECCCCc--EEEEEeCCCccE-------E--EEEECCCCCEEEE
Confidence 99999999999999999999998 89999999987531 111122332222 1 2235577889999
Q ss_pred EcCCCcEEEEEcCceee-eeeeeccc------------------------------ccccccCCCCCceeeec-------
Q 004298 180 GDKDGSICFNIFGIFPI-GKINIHKF------------------------------HVAIPNADEQGTCRLLN------- 221 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~i-g~~~i~~~------------------------------~~~~~s~~~~~~~~l~~------- 221 (763)
|+.||+|++|+...... ..+..+.. ...+.+++.++.+++|+
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 99999999998754321 11111110 01134667889999997
Q ss_pred -------cceeeEEecCCCCEEEEEeecC
Q 004298 222 -------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|+|+++++++.|+
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3588999999999999988776
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-21 Score=207.38 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=158.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC---
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--- 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--- 93 (763)
...|.+++|+|++++||+++.|++|++|+.+.. .+..+. |...|.+++|+|+|++|++|+.||+|++||+.++
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 140 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence 345999999999999999999999999998543 344454 7789999999999999999999999999999876
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+++..+.+|...|.++.|+|++.++++++ .|+++++|+.............+|...+ . ...++++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~i~~w~~~~~~~~~~~~~~~h~~~v-------~--~l~~sp~ 205 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHPSQELLASAS------YDDTVKLYREEEDDWVCCATLEGHESTV-------W--SLAFDPS 205 (345)
T ss_dssp EEEEEECCCCSCEEEEEECSSSSCEEEEE------TTSCEEEEEEETTEEEEEEEECCCSSCE-------E--EEEECTT
T ss_pred EEEEEecCcCCCeEEEEECCCCCEEEEEe------CCCcEEEEEecCCCEEEEEEecCCCCce-------E--EEEECCC
Confidence 45677889999999999999999999998 8999999987642111111122332222 2 2345678
Q ss_pred eeEEEEEcCCCcEEEEEcCce---------------------------eeeeeeecccccccccCCCCCceeeec-----
Q 004298 174 FSILCSGDKDGSICFNIFGIF---------------------------PIGKINIHKFHVAIPNADEQGTCRLLN----- 221 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~---------------------------~ig~~~i~~~~~~~~s~~~~~~~~l~~----- 221 (763)
+++|++|+.||+|++|+.... .+-.+........+.+++.++.+++|+
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 889999999999999974210 000111111111234556677777774
Q ss_pred ------------------cceeeEEecCCCC-EEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 222 ------------------ASIYKVALSKDLF-HLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 222 ------------------~~I~~v~~SpDg~-~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
..|.+++|+|++. .|+.++.|+ .+.++.+...
T Consensus 286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg------------~v~~W~~~~~ 336 (345)
T 3fm0_A 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG------------EVAFWKYQRP 336 (345)
T ss_dssp CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS------------CEEEEEECC-
T ss_pred CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC------------cEEEEEecCC
Confidence 3488899999986 555555554 7888877654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=206.01 Aligned_cols=187 Identities=20% Similarity=0.310 Sum_probs=152.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..+.+++|+|+++++|+++.||.|.+|++ +++..+.+. ++..|.+++|+|||++||+|+.||.|++||+++++.++.+
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 45888999999999999999999999999 667777665 6778999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.+++|+|+++++++++ .|+++++||.... .......++...+ ....+++++.+|++
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s------~dg~i~iwd~~~~--~~~~~~~~h~~~v---------~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTAS------DDGYIKIYDVQHA--NLAGTLSGHASWV---------LNVAFCPDDTHFVS 265 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEEC------TTSCEEEEETTTC--CEEEEECCCSSCE---------EEEEECTTSSEEEE
T ss_pred cccCCceeEEEEcCCCCEEEEEc------CCCeEEEEECCCc--ceeEEEcCCCCce---------EEEEECCCCCEEEE
Confidence 99999999999999999999998 8999999998753 1111222333322 23345677889999
Q ss_pred EcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+.||+|++|+...... ..+. -....|.+++|+|||+.|+.++.|+
T Consensus 266 ~s~D~~v~iwd~~~~~~~~~~~------------------~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTRTCVHTFF------------------DHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEEC------------------CCSSCEEEEEECTTSSEEEEEETTC
T ss_pred EeCCCcEEEEeCCCCEEEEEEc------------------CCCCcEEEEEECCCCCEEEEEeCCC
Confidence 99999999999765322 2221 1124688999999999999888766
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=207.39 Aligned_cols=206 Identities=16% Similarity=0.249 Sum_probs=156.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-E--EEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC--eE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-L--WTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG--KL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v--~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g--~~ 95 (763)
.|.+++|+|++++||+|+.|++|+||++.+.. + ..+ .|...|.+++|+|||++||+|+.||+|+||++.++ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 69999999999999999999999999995543 2 122 37789999999999999999999999999999876 46
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+..+.+|...|.+++|+|++.++++++ .|+++++||...... .......++.. .+..+ .+++++
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~h~~-------~v~~~--~~~p~~ 162 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCS------RDKSVWVWEVDEEDEYECVSVLNSHTQ-------DVKHV--VWHPSQ 162 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEEECTTSCEEEEEEECCCCS-------CEEEE--EECSSS
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEE------CCCeEEEEECCCCCCeEEEEEecCcCC-------CeEEE--EECCCC
Confidence 788999999999999999999999998 899999999865211 00011112222 22223 345777
Q ss_pred eEEEEEcCCCcEEEEEcCcee---eeeeeeccc----------ccccccCCCCCceeeec--------------------
Q 004298 175 SILCSGDKDGSICFNIFGIFP---IGKINIHKF----------HVAIPNADEQGTCRLLN-------------------- 221 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~---ig~~~i~~~----------~~~~~s~~~~~~~~l~~-------------------- 221 (763)
++|++|+.||+|++|+..... ...+.-|.. ...+.+++.|+.+++|+
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 899999999999999864321 122221111 11234677889999985
Q ss_pred ----------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ----------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|++..+++++.|+
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 2477899999999999888776
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=200.80 Aligned_cols=205 Identities=16% Similarity=0.230 Sum_probs=156.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-eEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-KLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-~~~~~l 99 (763)
.|.+++|+|++++|++|+.|++|++|++ +++.+..+. |...|++++|+|++++|++|+.||+|++||++++ .....+
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 4999999999999999999999999999 677777775 7889999999999999999999999999999987 556778
Q ss_pred cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
.+|...|.+++|+| ++..+++++ .|+++++||......... ...++ ...+..+.+.+.+++.+|+
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs------~D~~v~iwd~~~~~~~~~-~~~~~-------~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGC------LDRTVKVWSLGQSTPNFT-LTTGQ-------ERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEE------TTSEEEEEETTCSSCSEE-EECCC-------TTCEEEEEECCSTTCCEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEe------CCCeEEEEECCCCCccce-eccCC-------cCcEEEEEEEEcCCCCEEE
Confidence 99999999999999 567899998 899999999865321110 00111 1223334455556778999
Q ss_pred EEcCCCcEEEEEcCcee-eeeeeeccc----------ccccccCCCCCceeeec--------------cceeeEEecCCC
Q 004298 179 SGDKDGSICFNIFGIFP-IGKINIHKF----------HVAIPNADEQGTCRLLN--------------ASIYKVALSKDL 233 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~-ig~~~i~~~----------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg 233 (763)
+|+.||+|++|+..... +..+..|.. ...+.+++.++.+++|+ ..+.+++++|++
T Consensus 203 s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred EEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence 99999999999876532 233322221 11235778899999998 357788999988
Q ss_pred CEE-EEEee
Q 004298 234 FHL-TVLCS 241 (763)
Q Consensus 234 ~~L-lv~~~ 241 (763)
... ++++.
T Consensus 283 ~~~~~asg~ 291 (304)
T 2ynn_A 283 RKNYIASGF 291 (304)
T ss_dssp GGGCEEEEE
T ss_pred CceEEEEec
Confidence 642 44433
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=206.59 Aligned_cols=205 Identities=13% Similarity=0.168 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce---------------------------------EEEec--------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR---------------------------------LWTIS-------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~---------------------------------v~~~~-------- 59 (763)
+.|.+++|+|++++||+|+.||+|++|+. +++. +|.+.
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~ 144 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA 144 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence 45999999999999999999999999996 3332 23221
Q ss_pred --------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeec--CCCceeccCCCCCccc
Q 004298 60 --------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE--DAQPSKNDFGNIPTYE 129 (763)
Q Consensus 60 --------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~--~~~~l~s~s~~~~~~~ 129 (763)
|...|.+++|+|+++.|++|+.||+|++||+++++.+..+.+|...|.++.|+| ++..+++++ .
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs------~ 218 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG------C 218 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE------T
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe------C
Confidence 445689999999999999999999999999999999999999999999999987 467899998 8
Q ss_pred CCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeee--------
Q 004298 130 DRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKIN-------- 200 (763)
Q Consensus 130 d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~-------- 200 (763)
|+++++||..... ......++.. .+.. ..++++++.|++|+.||+|++|+..... ...+.
T Consensus 219 Dg~v~~wd~~~~~--~~~~~~~h~~-------~v~~--v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 219 DKKAMVWDMRSGQ--CVQAFETHES-------DVNS--VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp TSCEEEEETTTCC--EEEEECCCSS-------CEEE--EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CCeEEEEECCCCc--EEEEecCCCC-------CeEE--EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 9999999987531 1111122222 2222 3345777899999999999999876432 11111
Q ss_pred ----ecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 201 ----IHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 201 ----i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.......+++.++.+++|+ ..|.+++|||||++|++++.|+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 111111123556788899887 4688999999999999887765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=211.29 Aligned_cols=207 Identities=17% Similarity=0.176 Sum_probs=159.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|++++||+|+.|++|++|++ +++.+..+. |...|.+++|+|+|++|++|+.||+|++||+++++++..+
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 230 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 45999999999999999999999999999 555666664 7789999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc---------
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS--------- 170 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~--------- 170 (763)
.+|...|.++.|+|++..+++++ .|+++++||...... .....++...+ ..+.+.+
T Consensus 231 ~~h~~~v~~~~~~~~g~~l~s~s------~D~~v~vwd~~~~~~--~~~~~~h~~~v-------~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 231 TGHREWVRMVRPNQDGTLIASCS------NDQTVRVWVVATKEC--KAELREHRHVV-------ECISWAPESSYSSISE 295 (410)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCE--EEEECCCSSCE-------EEEEECCSCGGGGGGG
T ss_pred eCCCccEEEEEECCCCCEEEEEc------CCCeEEEEECCCCce--eeEecCCCceE-------EEEEEcCcccccchhh
Confidence 99999999999999999999998 899999999875311 11111121111 1111111
Q ss_pred ---------CCCeeEEEEEcCCCcEEEEEcCce-eeeeeeeccc----------ccccccCCCCCceeeec---------
Q 004298 171 ---------HQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKF----------HVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 171 ---------~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~----------~~~~~s~~~~~~~~l~~--------- 221 (763)
...+.+|++|+.||+|++|+.... .+..+..|.. ...+.+++.++.+++|+
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~ 375 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 123678999999999999987642 2222222211 11234677899999997
Q ss_pred -----cceeeEEecCCCCEEEEEeecC
Q 004298 222 -----ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|++..+++++.|+
T Consensus 376 ~~~h~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3689999999999999888776
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=201.71 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=154.6
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC------ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRFNW------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|++ ++|++|+.|++|++|++.. ..+..+. |...|.+++|+|||++|++|+.||+|++||++++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 459999999965 8999999999999999842 2344443 7889999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc---
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS--- 170 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~--- 170 (763)
+.+..+.+|...|.+++|+|++..+++++ .|+++++||..... .....++...+ ..+.+.+
T Consensus 98 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~D~~i~vwd~~~~~---~~~~~~h~~~v-------~~~~~~~~~~ 161 (319)
T 3frx_A 98 ETYQRFVGHKSDVMSVDIDKKASMIISGS------RDKTIKVWTIKGQC---LATLLGHNDWV-------SQVRVVPNEK 161 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEE------TTSCEEEEETTSCE---EEEECCCSSCE-------EEEEECCC--
T ss_pred CeeEEEccCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCe---EEEEeccCCcE-------EEEEEccCCC
Confidence 99999999999999999999999999998 89999999986421 11111222211 1222222
Q ss_pred -CCCeeEEEEEcCCCcEEEEEcCceeee-eeeec----------ccccccccCCCCCceeeec-------------ccee
Q 004298 171 -HQRFSILCSGDKDGSICFNIFGIFPIG-KINIH----------KFHVAIPNADEQGTCRLLN-------------ASIY 225 (763)
Q Consensus 171 -~~~~~~L~sgs~DG~I~lw~~~~~~ig-~~~i~----------~~~~~~~s~~~~~~~~l~~-------------~~I~ 225 (763)
.++...+++|+.||+|++|+....... .+..| .....+.+++.++.+++|+ ..|.
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 241 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEE
Confidence 124558999999999999987654321 11111 1111234677889999997 3688
Q ss_pred eEEecCCCCEEEEEeec
Q 004298 226 KVALSKDLFHLTVLCSG 242 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d 242 (763)
+++|+||+..++++..+
T Consensus 242 ~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 242 SLAFSPNRYWLAAATAT 258 (319)
T ss_dssp EEEECSSSSEEEEEETT
T ss_pred EEEEcCCCCEEEEEcCC
Confidence 99999999988876543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=200.28 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=158.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCe-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGK- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~- 94 (763)
+.|.+++|+|++++||+|+.|++|+||++.+ +.+..+. |...|.+++|+| +|++||+|+.||+|++||+++++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 3499999999999999999999999999953 3455554 888999999986 48999999999999999999874
Q ss_pred -EEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 -LLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 -~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+..|...|.+++|+|+ +..+++++ .|+++++|+.............++.. .+..+.+.+.
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s------~d~~v~~wd~~~~~~~~~~~~~~h~~-------~v~~~~~~p~ 156 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVAS------SDGKVSVVEFKENGTTSPIIIDAHAI-------GVNSASWAPA 156 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEEBCSSSCBCCEEEECCSS-------CEEEEEECCC
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEE------CCCcEEEEEecCCCceeeeeeecccC-------ccceEeecCC
Confidence 56677889999999999997 78899988 89999999987531111111122221 1222333321
Q ss_pred -----------CCeeEEEEEcCCCcEEEEEcCce-----eeeeeeeccc-----c--------cccccCCCCCceeeec-
Q 004298 172 -----------QRFSILCSGDKDGSICFNIFGIF-----PIGKINIHKF-----H--------VAIPNADEQGTCRLLN- 221 (763)
Q Consensus 172 -----------~~~~~L~sgs~DG~I~lw~~~~~-----~ig~~~i~~~-----~--------~~~~s~~~~~~~~l~~- 221 (763)
+++++|++|+.||+|++|++... ....+..|.. . ..+.+++.|+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 12468999999999999986431 1122221111 0 1244677889999985
Q ss_pred ------------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 222 ------------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 222 ------------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
..|.+++|||||+.|++++.|+ .++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~------------~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------------KVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS------------CEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC------------cEEEEEEC
Confidence 2367889999999999888766 67777654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-21 Score=204.47 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=151.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC--------ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW--------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~--------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
...|.+++|+|++++||+++.|++|+||++.. +.+..+. |...|.+++|+|||++||+|+.||+|++||+.
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 34599999999999999999999999999832 2334443 77899999999999999999999999999994
Q ss_pred C----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 92 N----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 92 ~----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
+ .+++..+.+|...|.++.|+|++..+++++ .|+++++|+.............+|... +..+.
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~i~iW~~~~~~~~~~~~~~~h~~~-------v~~~~ 204 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS------YDDTVRIWKDYDDDWECVAVLNGHEGT-------VWSSD 204 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE------TTSCEEEEEEETTEEEEEEEECCCSSC-------EEEEE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc------CCCeEEEEECCCCCeeEEEEccCCCCc-------EEEEE
Confidence 3 357788999999999999999999999998 899999998654210111112233222 22333
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCce---------eeeeeee-ccc---------ccccccCCCCCceeeec-------
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIF---------PIGKINI-HKF---------HVAIPNADEQGTCRLLN------- 221 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~---------~ig~~~i-~~~---------~~~~~s~~~~~~~~l~~------- 221 (763)
+.+...+..|++|+.||+|++|++... ....+.. +.. ...+.+++.++.+++|+
T Consensus 205 ~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~ 284 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWK 284 (330)
T ss_dssp ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEE
T ss_pred ecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceE
Confidence 433333678999999999999986431 1111110 110 11234667788888875
Q ss_pred ----------c-ceeeEEecC--CCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 222 ----------A-SIYKVALSK--DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 222 ----------~-~I~~v~~Sp--Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
. .|.+++|+| |++.|+.++.|+ .++++.++
T Consensus 285 ~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg------------~v~~W~~~ 327 (330)
T 2hes_X 285 VFAKRALCHGVYEINVVKWLELNGKTILATGGDDG------------IVNFWSLE 327 (330)
T ss_dssp EEEEESCTTTTSCEEEEEEC-----CCEEEEETTS------------EEEEEEC-
T ss_pred EEeccccccccceEEEEEEecCCCceEEEEecCCC------------cEEEEEec
Confidence 1 567788988 677787777665 67777654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=202.41 Aligned_cols=191 Identities=9% Similarity=0.062 Sum_probs=144.7
Q ss_pred CCeEEEEE-----cC-CCCEEEEEeCCCeEEEEEccC--------ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEW-----NP-EKDLLAMATEDSKILLHRFNW--------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~-----sP-~~~lLA~~s~Dg~V~v~~l~~--------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
+.|.+++| +| ++++||+|+.|++|++|++.. .....+. |...|.+++|+|+++++++|+.||+|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 34999999 77 899999999999999999842 2233333 778999999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+||+++++.+..+.+|...|.+++|+|+++.+++++ .|+++++||.............++... +..+
T Consensus 102 lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~~~-------v~~~ 168 (343)
T 2xzm_R 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG------AEREIKLWNILGECKFSSAEKENHSDW-------VSCV 168 (343)
T ss_dssp EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE------TTSCEEEEESSSCEEEECCTTTSCSSC-------EEEE
T ss_pred EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc------CCCEEEEEeccCCceeeeecccCCCce-------eeee
Confidence 999999999999999999999999999999999998 899999999864210000000111111 1122
Q ss_pred eccc--------CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 167 ANSS--------HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 167 ~~~~--------~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
.+.+ .+...++++|+.||+|++|+........+. .+...|.+++|+|||++|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK------------------AHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE------------------CCSSCEEEEEECTTSSEEEE
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc------------------CccccceEEEECCCCCEEEE
Confidence 2221 223478999999999999985433222221 12246889999999999999
Q ss_pred EeecC
Q 004298 239 LCSGQ 243 (763)
Q Consensus 239 ~~~d~ 243 (763)
++.|+
T Consensus 231 gs~dg 235 (343)
T 2xzm_R 231 GGKDK 235 (343)
T ss_dssp EETTC
T ss_pred EcCCC
Confidence 88776
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=198.31 Aligned_cols=208 Identities=18% Similarity=0.194 Sum_probs=159.7
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEEccCce---EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 19 PVASQIKIAEWNPE----KDLLAMATEDSKILLHRFNWQR---LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 19 ~~~~~V~~l~~sP~----~~lLA~~s~Dg~V~v~~l~~~~---v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
...+.|.+++|+|+ +++||+|+.|++|+||++...+ .|.+. |...|.+++|+|+++++++|+.||+|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 34566999999985 5799999999999999995443 34554 7788999999999999999999999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
++++.+..+..|...+.+++|+|+++.+++++ .++.+++|+....... .....+.. .+ ....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~------~dg~v~i~~~~~~~~~--~~~~~~~~-------~v--~~~~~ 172 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT------HVGKVNIFGVESGKKE--YSLDTRGK-------FI--LSIAY 172 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEEC------TTSEEEEEETTTCSEE--EEEECSSS-------CE--EEEEE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEc------CCCcEEEEEcCCCcee--EEecCCCc-------eE--EEEEE
Confidence 99999999999999999999999999999998 8999999998753111 00111111 11 22345
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc----------cccccCCCCCceeeec--------------ccee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH----------VAIPNADEQGTCRLLN--------------ASIY 225 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~----------~~~~s~~~~~~~~l~~--------------~~I~ 225 (763)
++++++|++|+.||.|++|+.... .+..+..+..+ ..+.+++.++.+++|+ ..|.
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence 678889999999999999987543 22223222211 1234677889999997 3588
Q ss_pred eEEecCCCCEEEEEeecC
Q 004298 226 KVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 226 ~v~~SpDg~~Llv~~~d~ 243 (763)
+++|+|||++|+.++.|+
T Consensus 253 ~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp EEEECTTSSEEEEEETTS
T ss_pred EEEECCCCCEEEEEeCCC
Confidence 999999999999988876
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=200.28 Aligned_cols=204 Identities=21% Similarity=0.248 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC----eE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG----KL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g----~~ 95 (763)
+.|.+++|+|+++++|+++.||+|++|+. +++.+..+. |...|.+++|+|+|++|++|+.||.|++|++.++ +.
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence 45999999999999999999999999998 677777665 7778999999999999999999999999999865 46
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...+.+|...|.++.|++++. +++++ .|+++++||..... ......++... +. ...++++++
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~~-l~s~s------~d~~i~~wd~~~~~--~~~~~~~h~~~-------v~--~~~~~~~~~ 197 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDNQ-IVTSS------GDTTCALWDIETGQ--QTTTFTGHTGD-------VM--SLSLAPDTR 197 (340)
T ss_dssp EEEEECCSSCEEEEEEEETTE-EEEEE------TTSCEEEEETTTTE--EEEEECCCSSC-------EE--EEEECTTSS
T ss_pred EEEecCCCccEEEEEECCCCc-EEEEE------CCCcEEEEECCCCc--EEEEEcCCCCc-------eE--EEEECCCCC
Confidence 677889999999999999887 56666 79999999987531 11111223222 22 233556778
Q ss_pred EEEEEcCCCcEEEEEcCcee-eeeeeecc----------cccccccCCCCCceeeec----------------cceeeEE
Q 004298 176 ILCSGDKDGSICFNIFGIFP-IGKINIHK----------FHVAIPNADEQGTCRLLN----------------ASIYKVA 228 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~-ig~~~i~~----------~~~~~~s~~~~~~~~l~~----------------~~I~~v~ 228 (763)
++++|+.||+|++|+..... ...+..+. ....+.+++.++.+++|+ ..|.+++
T Consensus 198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 99999999999999865432 22222111 112234677889999997 1478899
Q ss_pred ecCCCCEEEEEeecC
Q 004298 229 LSKDLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~ 243 (763)
|+|||+.+++++.++
T Consensus 278 ~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 278 FSKSGRLLLAGYDDF 292 (340)
T ss_dssp ECTTSSEEEEEETTS
T ss_pred ECCCCCEEEEECCCC
Confidence 999999999988776
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=201.69 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=153.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEE-----EecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLW-----TISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~-----~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.|.+++|+|++.++ +++.||+|+||++ +++.+. ...|...|++++|+|||++|++|+.||.|++||+++++.+
T Consensus 96 ~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 96 GVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp CEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 39999999998655 5788999999998 443322 2237789999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-Ce
Q 004298 97 RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (763)
..+.+|...|++++|++++. .+++++ .|+++++||..............+. ..+..+. +++ ..
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~------~dg~v~~wd~~~~~~~~~~~~~~~~-------~~v~~v~--~sp~~~ 239 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCG------EDGRILLWDTRKPKPATRIDFCASD-------TIPTSVT--WHPEKD 239 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEE------TTSCEEECCTTSSSCBCBCCCTTCC-------SCEEEEE--ECTTST
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeec------cCCceEEEECCCCceeeeeeecccc-------ccccchh--hhhccc
Confidence 99999999999999999885 677777 8999999998763221111011111 1122233 333 35
Q ss_pred eEEEEEcCCCcEEEEEcCcee-eeeeeecc-----cc------cccccCCCCCceeeec-------------cceeeEEe
Q 004298 175 SILCSGDKDGSICFNIFGIFP-IGKINIHK-----FH------VAIPNADEQGTCRLLN-------------ASIYKVAL 229 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~-----~~------~~~~s~~~~~~~~l~~-------------~~I~~v~~ 229 (763)
.+|++|+.||.|++|+..... ...+..+. +. .-+.+++.|+.+++|+ ..|.+++|
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vaf 319 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAW 319 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence 689999999999999865431 11121111 11 1134677889999997 46899999
Q ss_pred cC-CCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 230 SK-DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 230 Sp-Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
|| |++.|+.++.|+ .++++.+..
T Consensus 320 sP~d~~~l~s~s~Dg------------~v~iW~~~~ 343 (357)
T 4g56_B 320 SPLDHSKFTTVGWDH------------KVLHHHLPS 343 (357)
T ss_dssp CSSSTTEEEEEETTS------------CEEEEECC-
T ss_pred eCCCCCEEEEEcCCC------------eEEEEECCC
Confidence 98 888888887766 777777654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=198.04 Aligned_cols=204 Identities=12% Similarity=0.126 Sum_probs=157.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc-----eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ-----RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~-----~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|.+++|+|+++++|+++.|+.|++|++... ....+ .|...|.++.|+|+++ +++|+.||+|++||+++++.
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~ 176 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ 176 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE
Confidence 35999999999999999999999999998432 22222 3778899999999886 88999999999999999999
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
+..+.+|...|.+++|+|++.++++++ .|+++++||..... ......++... +. ..+++++++
T Consensus 177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~------~d~~v~~wd~~~~~--~~~~~~~h~~~-------v~--~v~~~p~~~ 239 (340)
T 1got_B 177 TTTFTGHTGDVMSLSLAPDTRLFVSGA------CDASAKLWDVREGM--CRQTFTGHESD-------IN--AICFFPNGN 239 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCS--EEEEECCCSSC-------EE--EEEECTTSS
T ss_pred EEEEcCCCCceEEEEECCCCCEEEEEe------CCCcEEEEECCCCe--eEEEEcCCcCC-------EE--EEEEcCCCC
Confidence 999999999999999999999999998 89999999987531 11111222221 22 234557788
Q ss_pred EEEEEcCCCcEEEEEcCcee-eeeee------------ecccccccccCCCCCceeeec--------------cceeeEE
Q 004298 176 ILCSGDKDGSICFNIFGIFP-IGKIN------------IHKFHVAIPNADEQGTCRLLN--------------ASIYKVA 228 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~~-ig~~~------------i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~ 228 (763)
+|++|+.||+|++|+..... ...+. .+.......+++.++.+++|+ .+|.+++
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 99999999999999976432 22221 111111233566788899987 4689999
Q ss_pred ecCCCCEEEEEeecC
Q 004298 229 LSKDLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~ 243 (763)
|+|||++|+.++.|+
T Consensus 320 ~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 320 VTDDGMAVATGSWDS 334 (340)
T ss_dssp ECTTSSCEEEEETTS
T ss_pred EcCCCCEEEEEcCCc
Confidence 999999999888776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=199.33 Aligned_cols=209 Identities=14% Similarity=0.103 Sum_probs=152.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cc--eEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCC--
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQ--RLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENG-- 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~--~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g-- 93 (763)
+.|.+++|+|++++||+|+.|++|+||++. ++ .+..+. |...|.+++|+| +|++|++|+.||+|++||++++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 349999999999999999999999999994 33 244444 888999999986 5999999999999999999987
Q ss_pred eEEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceeccc
Q 004298 94 KLLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
+....+.+|...|.+++|+|+ +.++++++ .|+++++|+...... .......++...+ ..+.+.+
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v-------~~~~~~~ 160 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGS------SDGAISLLTYTGEGQWEVKKINNAHTIGC-------NAVSWAP 160 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEEC------SSSCEEEEEECSSSCEEECCBTTSSSSCB-------CCCEECC
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEc------CCCCEEEEecCCCCCcceeeeeccccCCc-------ceEEEcc
Confidence 467778899999999999998 78899998 899999999765310 0011111221111 1122211
Q ss_pred C---------------CCeeEEEEEcCCCcEEEEEcCce----eeeeeeeccc-----c---------cccccCCCCCce
Q 004298 171 H---------------QRFSILCSGDKDGSICFNIFGIF----PIGKINIHKF-----H---------VAIPNADEQGTC 217 (763)
Q Consensus 171 ~---------------~~~~~L~sgs~DG~I~lw~~~~~----~ig~~~i~~~-----~---------~~~~s~~~~~~~ 217 (763)
. ..+.+|++|+.||+|++|+...- ....+..|.. . ..+.+++.|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 1 12468999999999999987521 2222221211 1 124567788888
Q ss_pred eeec------------------cceeeEEecCCCCEEEEEeecC
Q 004298 218 RLLN------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 218 ~l~~------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++|+ ..|.+++|+|||+.|++++.|+
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 8884 2478899999999999988776
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=192.48 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=149.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|+++++|+++.||.|++|++ +++.+..+. |...|.+++|+|||++|++|+.||.|++||+++++.+..+
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 103 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 45999999999999999999999999999 566666665 7788999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.|+|++..+++++ .|+.+++||...... ......+.. .+..+ .+++++++|++
T Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~~~~~~-------~v~~~--~~~~~~~~l~~ 166 (312)
T 4ery_A 104 KGHSNYVFCCNFNPQSNLIVSGS------FDESVRIWDVKTGKC--LKTLPAHSD-------PVSAV--HFNRDGSLIVS 166 (312)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEE------TTSCEEEEETTTCCE--EEEECCCSS-------CEEEE--EECTTSSEEEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCEE--EEEecCCCC-------cEEEE--EEcCCCCEEEE
Confidence 99999999999999999999998 899999999875311 111111211 12223 34567789999
Q ss_pred EcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
|+.||.|++|+...... ..+.. . ...++..++|+|+++++++++.++
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~----------~-------~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLID----------D-------DNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECC----------S-------SCCCEEEEEECTTSSEEEEEETTT
T ss_pred EeCCCcEEEEECCCCceeeEEec----------c-------CCCceEEEEECCCCCEEEEEcCCC
Confidence 99999999999764321 11100 0 013477899999999999888766
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=192.40 Aligned_cols=216 Identities=16% Similarity=0.170 Sum_probs=165.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++++.|+.|++|++ +++.+..+. |...|.+++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence 45999999999999999999999999999 566666665 7788999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..|...|.++.|+|++..+++++ .|+.+++||....... ......+ ...+. ...+++++++|++
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~-~~~~~~~-------~~~~~--~~~~~~~~~~l~~ 209 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSS------YDGLCRIWDTASGQCL-KTLIDDD-------NPPVS--FVKFSPNGKYILA 209 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCEE-EEECCSS-------CCCEE--EEEECTTSSEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCcee-eEEeccC-------CCceE--EEEECCCCCEEEE
Confidence 99999999999999999999998 8999999998753110 0000011 11111 2335677889999
Q ss_pred EcCCCcEEEEEcCcee-eeeeeeccc-------------ccccccCCCCCceeeec--------------cceeeEEecC
Q 004298 180 GDKDGSICFNIFGIFP-IGKINIHKF-------------HVAIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-ig~~~i~~~-------------~~~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
|+.||.|++|++.... ...+..+.. .....+++.++.+++|+ ..|.+++|+|
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p 289 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC
Confidence 9999999999876532 222221111 01134677899999997 4588999999
Q ss_pred CCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 232 DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 232 Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
+++.++.++.++ ...+.++..|
T Consensus 290 ~~~~l~s~~~~~----------d~~i~~W~~d 311 (312)
T 4ery_A 290 TENIIASAALEN----------DKTIKLWKSD 311 (312)
T ss_dssp SSSEEEEEECTT----------TCCEEEEECC
T ss_pred cCCceEEEEccC----------CccEEEecCC
Confidence 999988776311 1267777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-20 Score=201.42 Aligned_cols=215 Identities=19% Similarity=0.221 Sum_probs=150.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCC------------------------
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGK------------------------ 74 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~------------------------ 74 (763)
.+.|.+++|+|++++||+|+.|++|+||+. +++.+..+. |...|.+++|+|||+
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence 345999999999999999999999999998 555544443 334444444444443
Q ss_pred --------------------------EEEEEEcCCcEEEEEccCCeEEEEe-----cccCCceeEEEeec-CCCceeccC
Q 004298 75 --------------------------AIAVGLEDGTITLHDVENGKLLRSL-----KSHTVAVVCLNWEE-DAQPSKNDF 122 (763)
Q Consensus 75 --------------------------~Lasg~~Dg~V~lwdve~g~~~~~l-----~~h~~~V~~l~ws~-~~~~l~s~s 122 (763)
.|++|+.||+|++||+++++.+..+ .+|...|.++.|++ ++..+++|+
T Consensus 146 ~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 146 NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 4666677777788887777777766 57888999999977 778899998
Q ss_pred CCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeee
Q 004298 123 GNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINI 201 (763)
Q Consensus 123 ~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i 201 (763)
.|+++++||.+.... ......+|...+ ..+ .++++++.|++|+.||+|++|+..... +..+..
T Consensus 226 ------~D~~v~~wd~~~~~~-~~~~~~~h~~~v-------~~v--~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 226 ------CDTTVRLWDLRITSR-AVRTYHGHEGDI-------NSV--KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp ------TTSCEEEEETTTTCC-CCEEECCCSSCC-------CEE--EECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred ------CCCeEEEEECCCCCc-ceEEECCcCCCe-------EEE--EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 899999999874211 111222333322 223 355778899999999999999876432 111111
Q ss_pred -----------------cccccccccCCCCCceeeec------------------cceeeEEecCCCCEEEEEeecCccc
Q 004298 202 -----------------HKFHVAIPNADEQGTCRLLN------------------ASIYKVALSKDLFHLTVLCSGQLSQ 246 (763)
Q Consensus 202 -----------------~~~~~~~~s~~~~~~~~l~~------------------~~I~~v~~SpDg~~Llv~~~d~l~~ 246 (763)
+.......+++.++.+++|+ +.|.+++|||||++|+.++.|+
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~--- 366 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK--- 366 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS---
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC---
Confidence 11111123566788888886 3578899999999998887766
Q ss_pred cccCCCCCCcEEEEEee
Q 004298 247 EELGGHGMHGLHCLVLD 263 (763)
Q Consensus 247 ~~~~~~~~~~l~~~~ld 263 (763)
.++++.+.
T Consensus 367 ---------~i~iW~~~ 374 (380)
T 3iz6_a 367 ---------NLKIWAFS 374 (380)
T ss_dssp ---------CEEEEECC
T ss_pred ---------CEEEEecC
Confidence 67777654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-20 Score=197.52 Aligned_cols=217 Identities=12% Similarity=0.122 Sum_probs=161.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCCe--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENGK-- 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g~-- 94 (763)
.|.+++|+|++++||+++.||.|++|++. ++.+..+. |...|++++|+|+ +++|++|+.||.|++||+++++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence 39999999999999999999999999994 33444554 7889999999987 9999999999999999999987
Q ss_pred EEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC-
Q 004298 95 LLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH- 171 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~- 171 (763)
.+..+..|...|.++.|+|+ +..+++++ .|+.+++||.............++. ..+..+.+.+.
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~ 159 (379)
T 3jrp_A 93 QIAVHAVHSASVNSVQWAPHEYGPLLLVAS------SDGKVSVVEFKENGTTSPIIIDAHA-------IGVNSASWAPAT 159 (379)
T ss_dssp EEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEECCTTSCCCEEEEECCT-------TCEEEEEECCCC
T ss_pred EeeeecCCCcceEEEEeCCCCCCCEEEEec------CCCcEEEEecCCCCceeeEEecCCC-------CceEEEEEcCcc
Confidence 77788889999999999999 88999988 8999999998764221111111221 12223333321
Q ss_pred ----------CCeeEEEEEcCCCcEEEEEcCce-----eeee----------eeeccc---ccccccCCCCCceeeec--
Q 004298 172 ----------QRFSILCSGDKDGSICFNIFGIF-----PIGK----------INIHKF---HVAIPNADEQGTCRLLN-- 221 (763)
Q Consensus 172 ----------~~~~~L~sgs~DG~I~lw~~~~~-----~ig~----------~~i~~~---~~~~~s~~~~~~~~l~~-- 221 (763)
++++.+++|+.||.|++|+.... .... +..+.. ...+.+++.++.+++|+
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 15788999999999999976431 1111 111111 12234566788888886
Q ss_pred -----------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -----------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -----------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
..|.+++|+|||+++++++.++ .++++.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------------~i~iw~~~~ 287 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN------------KVTLWKENL 287 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS------------SEEEEEEEE
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC------------cEEEEeCCC
Confidence 3578899999999999888765 677777663
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=194.29 Aligned_cols=213 Identities=13% Similarity=0.073 Sum_probs=156.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|+++++++++.|++|++|++ +++.+..+. |...|.+++|+|++++|++|+.||+|++||++ ++.+..+
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 34999999999999999999999999999 566666664 78899999999999999999999999999986 6778888
Q ss_pred cccCCceeEEEeecCC------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 100 KSHTVAVVCLNWEEDA------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+|...|.++.|.|+. ..+++++ .|+.+++||..... ......+|...+ . ...++++
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~--~~~~~~~h~~~v-------~--~~~~sp~ 207 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAG------NDKMVKAWNLNQFQ--IEADFIGHNSNI-------N--TLTASPD 207 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEE------TTSCEEEEETTTTE--EEEEECCCCSCE-------E--EEEECTT
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEe------CCCEEEEEECCcch--hheeecCCCCcE-------E--EEEEcCC
Confidence 9999999999999854 4788887 89999999987521 111112232222 2 2345678
Q ss_pred eeEEEEEcCCCcEEEEEcCcee-eeeeeeccc----ccc----cccCCCCCceeeec----------------------c
Q 004298 174 FSILCSGDKDGSICFNIFGIFP-IGKINIHKF----HVA----IPNADEQGTCRLLN----------------------A 222 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~----~~~----~~s~~~~~~~~l~~----------------------~ 222 (763)
+++|++|+.||+|++|+..... +..+..+.. ... ....+.+..+++|+ .
T Consensus 208 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp SSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCc
Confidence 8899999999999999876532 222211110 000 01111223345543 2
Q ss_pred ceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 223 SIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 223 ~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
.+.+++|||||++|++++.|+ .++++.+.+
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg------------~i~vWd~~t 317 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDN------------VIRVWQVMT 317 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTS------------CEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCc------------eEEEEEEee
Confidence 467899999999999988776 788887765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=195.16 Aligned_cols=211 Identities=12% Similarity=0.064 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++.++++++.|++|++|++ +++.+..+. |...|.+++|+|||++|++|+.||+|++||+. ++.....
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~ 155 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS 155 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee
Confidence 45999999999999999999999999999 667776665 88899999999999999999999999999998 4444333
Q ss_pred c---ccCCceeEEEeecCC----------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 100 K---SHTVAVVCLNWEEDA----------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 100 ~---~h~~~V~~l~ws~~~----------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
. .|...|.++.|+|++ .++++++ .|+++++||.... ......++... +.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~---~~~~~~~h~~~-------v~-- 217 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG------WDGRLKVWNTNFQ---IRYTFKAHESN-------VN-- 217 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE------TTSEEEEEETTTE---EEEEEECCSSC-------EE--
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEc------CCCEEEEEcCCCc---eeEEEcCcccc-------ce--
Confidence 3 688899999999987 5788887 8999999994321 11111222222 22
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCce--eeee---------eeecccccccccCCCCCceeeec--------------
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIF--PIGK---------INIHKFHVAIPNADEQGTCRLLN-------------- 221 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~--~ig~---------~~i~~~~~~~~s~~~~~~~~l~~-------------- 221 (763)
...+++++++|++|+.||+|++|+.... .... +..+.. ......+.++.+++|+
T Consensus 218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~-~~~la~~~d~~v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK-LQWVAVGTDQGVKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSS-SCEEEEEESSCEEEEESSSCCSCSEEECCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCC-CCEEEEECCCCEEEEEeCCCCCCceEEeec
Confidence 2345678889999999999999987321 1111 111110 1122334456677775
Q ss_pred -------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
..|.+++|+|||+.|++++.|+ .++++.+++
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg------------~v~~w~~~~ 340 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG------------VIRTFSFET 340 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS------------EEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc------------eEEEEEEEc
Confidence 1367899999999999888776 777777664
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-20 Score=201.14 Aligned_cols=203 Identities=18% Similarity=0.205 Sum_probs=151.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCC-------------------CcEEEEEEccCCCEEEEEEc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPG-------------------KSVTSLCWRPDGKAIAVGLE 81 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~-------------------~~V~~l~wspDG~~Lasg~~ 81 (763)
+.|.+++|+|+|++||+++ ++.+.+|++ +++.+..+... ..|++++|+|||++||+|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 3499999999999999976 688999998 66666665411 24899999999999999999
Q ss_pred CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 82 DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
||.|++||+++++.+..+.+|...|.+++|+|++..+++++ .|+++++||....... ..... ..
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~v~iwd~~~~~~~--~~~~~--------~~ 207 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS------GDRTVRIWDLRTGQCS--LTLSI--------ED 207 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEE--EEEEC--------SS
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec------CCCcEEEEECCCCeeE--EEEEc--------CC
Confidence 99999999999999999999999999999999999999998 8999999998752110 00000 01
Q ss_pred cccceecccCC-CeeEEEEEcCCCcEEEEEcCcee-eeee-----------------eecccccccccCCCCCceeeecc
Q 004298 162 SFRELANSSHQ-RFSILCSGDKDGSICFNIFGIFP-IGKI-----------------NIHKFHVAIPNADEQGTCRLLNA 222 (763)
Q Consensus 162 ~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~~-ig~~-----------------~i~~~~~~~~s~~~~~~~~l~~~ 222 (763)
.+..+ .+++ +++++++|+.||+|++|+..... +..+ ........+.+++.++.+++|+.
T Consensus 208 ~v~~~--~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 208 GVTTV--AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp CEEEE--EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CcEEE--EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 11122 2334 67889999999999999865321 1111 11111112346667888888862
Q ss_pred --------------------------ceeeEEecCCCCEEEEEeecC
Q 004298 223 --------------------------SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 --------------------------~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.|.+++|+|++++++.++.|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 367899999999998888776
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=187.59 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cc----eEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQ----RLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~----~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|++++||+++.||.|++|++. +. .+..+. |...|++++|+| ||++|++|+.||.|++||++++
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 349999999999999999999999999994 32 233333 788999999999 6999999999999999999987
Q ss_pred ---------eEEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCC
Q 004298 94 ---------KLLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 94 ---------~~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+.+..+..|...|.++.|+|+ +..+++++ .|+.+++||...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~ 143 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG------NDGILRLYDALE 143 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTCEEEEEECSS
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec------CCCcEEEecCCC
Confidence 668888899999999999999 99999988 899999999765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=206.29 Aligned_cols=217 Identities=15% Similarity=0.121 Sum_probs=158.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCce--EEEe----------------------------------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQR--LWTI---------------------------------------- 58 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~--v~~~---------------------------------------- 58 (763)
..|.+++|+|+|++||+|+.|++|+||++ +++. ...+
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~ 139 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 139 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence 34999999999999999999999999998 3221 1111
Q ss_pred -----cCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCc
Q 004298 59 -----SPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT 132 (763)
Q Consensus 59 -----~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~ 132 (763)
.|...|++++|+|+++ .|++|+.|++|++||.++++..+.+.+|...|.+++|+|+++++++++ .|++
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s------~D~~ 213 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG------GDGT 213 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSC
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE------CCCc
Confidence 0334688888888886 599999999999999999999999999999999999999999999998 8999
Q ss_pred eeecCCCCCCC--CCCC---cccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeeccc--
Q 004298 133 SRFFPPAPRIP--QMPG---LVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKF-- 204 (763)
Q Consensus 133 i~~wd~~~~~~--~l~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~-- 204 (763)
+++||...... .+.. ...+|.. .+. ...+++++++|++|+.||+|++|+..... ...+..+..
T Consensus 214 i~lwd~~~g~~~~~~~~~~~~~~~h~~-------~V~--~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFEDDSLKNVAHSG-------SVF--GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSS-------CEE--EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred EEEEECCCCcEeeeeccccccccccCC-------CEE--EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 99999764211 1100 0002222 222 33456788899999999999999976532 222221110
Q ss_pred ---------ccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEE
Q 004298 205 ---------HVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLV 261 (763)
Q Consensus 205 ---------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ 261 (763)
.....+++.++.+++|+ ..|.+++|||||++|+.++.|+ .++++.
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~------------~v~~Wd 352 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG------------HINSWD 352 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------------CEEEEE
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC------------cEEEEE
Confidence 11123445667777775 4688999999999999888766 777777
Q ss_pred eecc
Q 004298 262 LDTS 265 (763)
Q Consensus 262 ld~~ 265 (763)
+...
T Consensus 353 ~~~~ 356 (611)
T 1nr0_A 353 ISTG 356 (611)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-20 Score=200.20 Aligned_cols=206 Identities=11% Similarity=0.057 Sum_probs=143.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe---E
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK---L 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~---~ 95 (763)
.|.+++|+|++++||+++.|+.|++|++.. +.+..+. |...|.+++|+|+|++|++|+.||+|++||+++++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 499999999999999999999999999954 3444443 77899999999999999999999999999999877 6
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccC-CcccccCCcccccceecccCCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSG-DTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~-~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
...+..|...|+++.|+|++..+++++ .|+.+++|+...... .......+ +.. .+..+ .++++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~h~~-------~v~~~--~~~~~ 157 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGS------GARVISVCYFEQENDWWVSKHLKRPLRS-------TILSL--DWHPN 157 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEE------SSSCEEECCC-----CCCCEEECSSCCS-------CEEEE--EECTT
T ss_pred eeEecccCCceEEEEECCCCCEEEEEe------cCCeEEEEEECCcccceeeeEeecccCC-------CeEEE--EEcCC
Confidence 777888999999999999999999998 899999999876321 01111111 222 22233 34567
Q ss_pred eeEEEEEcCCCcEEEEEcCce-------------------eee---------eeeecccccccccCCCCCceeeec----
Q 004298 174 FSILCSGDKDGSICFNIFGIF-------------------PIG---------KINIHKFHVAIPNADEQGTCRLLN---- 221 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~-------------------~ig---------~~~i~~~~~~~~s~~~~~~~~l~~---- 221 (763)
+++|++|+.||+|++|+.... .+. .+........+.+++.++.+++|+
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 789999999999999997411 111 111111111233556677777775
Q ss_pred --------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 --------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 --------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+|.+++|+|||+.++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp TSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence 2477888999888776664433
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-19 Score=205.77 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=126.6
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..|.+++|+|++. +||+++.|++|++|+. +++.+..+. |...|.+++|+|||++||+|+.||+|++||+.+++.+..
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 4599999999986 6999999999999998 455555554 788999999999999999999999999999999999988
Q ss_pred ec-------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCC---ccc--------CCc-----
Q 004298 99 LK-------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPG---LVS--------GDT----- 153 (763)
Q Consensus 99 l~-------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~---~~s--------~~~----- 153 (763)
+. +|...|.+++|+|+++.+++++ .|+++++||..... ..+.. ... +..
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s------~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASAS------ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEe------CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 84 7999999999999999999998 89999999986521 00000 000 000
Q ss_pred ----------------ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 154 ----------------GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 154 ----------------~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
....+....+. ...+++++++|++|+.||+|++|+...
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~--~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAIT--ALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEE--EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 00001111222 233567888999999999999998654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=197.88 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=141.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-------------CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-------------WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-------------~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
..|.+++|+|+|.+|++++ |+++++|+.. +.......+...|.+++|+||+ .|++|+.||+|+||
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 4599999999999999887 6667666531 0011122234569999999996 67899999999999
Q ss_pred EccCCeEEEE----ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 89 DVENGKLLRS----LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 89 dve~g~~~~~----l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
|+++++.+.. ..+|...|++++|+|+++++++++ .|+++++||..... ......+|...+ .
T Consensus 109 d~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------~d~~i~iwd~~~~~--~~~~~~~h~~~V-------~ 173 (344)
T 4gqb_B 109 ELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------KDICIKVWDLAQQV--VLSSYRAHAAQV-------T 173 (344)
T ss_dssp EECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCSSCE-------E
T ss_pred eccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe------CCCeEEEEECCCCc--EEEEEcCcCCce-------E
Confidence 9998875543 448999999999999999999998 89999999987531 111122333222 2
Q ss_pred ceecccCCCe-eEEEEEcCCCcEEEEEcCceee-eeee------------eccccc-ccccCCCCCceeeec--------
Q 004298 165 ELANSSHQRF-SILCSGDKDGSICFNIFGIFPI-GKIN------------IHKFHV-AIPNADEQGTCRLLN-------- 221 (763)
Q Consensus 165 ~~~~~~~~~~-~~L~sgs~DG~I~lw~~~~~~i-g~~~------------i~~~~~-~~~s~~~~~~~~l~~-------- 221 (763)
.+. +++++ .+|++|+.||+|++|+...... ..+. .+.... -+.+++.++.+++|+
T Consensus 174 ~~~--~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 174 CVA--ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEE--ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred EEE--ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 233 33443 5899999999999998764321 1111 111011 124667889999997
Q ss_pred ------cceeeEEecCCCCE-EEEEeecC
Q 004298 222 ------ASIYKVALSKDLFH-LTVLCSGQ 243 (763)
Q Consensus 222 ------~~I~~v~~SpDg~~-Llv~~~d~ 243 (763)
..|.+++|||||.. |+.++.|+
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence 46899999999965 55555555
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=204.05 Aligned_cols=204 Identities=23% Similarity=0.317 Sum_probs=161.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..|.+++|+|+++++|+++.|+.|++|+.+++.+..+. |...|++++|+|||++|++|+.||.|++||. +++.+..+
T Consensus 344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~ 422 (577)
T 2ymu_A 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 422 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe
Confidence 345999999999999999999999999999988887775 7889999999999999999999999999995 68889999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|++++|+|+++.+++++ .|+++++|+...+ ......++... +. ...+++++++|++
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~------~d~~v~~w~~~~~---~~~~~~~~~~~-------v~--~~~~spd~~~las 484 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASAS------DDKTVKLWNRNGQ---LLQTLTGHSSS-------VR--GVAFSPDGQTIAS 484 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTSC---EEEEEECCSSC-------EE--EEEECTTSCEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEc------CCCEEEEEECCCC---EEEEEcCCCCC-------EE--EEEEcCCCCEEEE
Confidence 99999999999999999999998 8999999996532 11111222221 22 2345678889999
Q ss_pred EcCCCcEEEEEcCceeeeeeeecccc----------cccccCCCCCceeeec-------------cceeeEEecCCCCEE
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFH----------VAIPNADEQGTCRLLN-------------ASIYKVALSKDLFHL 236 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~----------~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~~L 236 (763)
++.||+|++|+.....+..+..|... ....+++.++.+++|+ ..|.+++|||||++|
T Consensus 485 ~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 485 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 99999999998655444444333221 1234667788899887 468889999999998
Q ss_pred EEEeecC
Q 004298 237 TVLCSGQ 243 (763)
Q Consensus 237 lv~~~d~ 243 (763)
++++.|+
T Consensus 565 ~s~~~D~ 571 (577)
T 2ymu_A 565 ASASSDK 571 (577)
T ss_dssp EEEETTS
T ss_pred EEEeCCC
Confidence 8877665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-19 Score=188.69 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=135.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC---ceEEEe--c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC---
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW---QRLWTI--S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN--- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~---~~v~~~--~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~--- 92 (763)
+.|.+++|+|+ +||+|+.|++|++|++.. +.+..+ . |...|.+++|+|+|++||+|+.||+|+|||++.
T Consensus 15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence 34999999997 999999999999999954 233334 2 778999999999999999999999999999853
Q ss_pred ----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccce
Q 004298 93 ----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 93 ----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
.+.+..+.+|...|.+++|+|+++++++++ .|+++++||....... ......+|.. .+..+
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s------~D~~v~iwd~~~~~~~~~~~~~~~~h~~-------~v~~v 159 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS------RDKSVWIWETDESGEEYECISVLQEHSQ-------DVKHV 159 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEE------TTSCEEEEECCTTCCCCEEEEEECCCSS-------CEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe------CCCEEEEEeccCCCCCeEEEEEeccCCC-------ceEEE
Confidence 456788899999999999999999999998 8999999998532111 1111122222 22223
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCce---eeeeeeecccccccccCCCCCceeeeccceeeEEecCC--CCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIF---PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKD--LFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~---~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpD--g~~Llv~~~ 241 (763)
.+++++++|++|+.||+|++|+...- .+..+ .-+.+.|.+++|+|+ +..++.++.
T Consensus 160 --~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 160 --IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL------------------NGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp --EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE------------------CCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred --EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc------------------cCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 34567789999999999999974321 11111 112246889999998 667777766
Q ss_pred cC
Q 004298 242 GQ 243 (763)
Q Consensus 242 d~ 243 (763)
|+
T Consensus 220 D~ 221 (330)
T 2hes_X 220 DS 221 (330)
T ss_dssp TS
T ss_pred CC
Confidence 65
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=185.11 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=156.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c--eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q--RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~--~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
...|.+++|+|+++++++++.|+.|.+|++.. + ....+. +...|.+++|+|+|+++++|+.||.|++||+++++.+
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence 34599999999999999999999999999944 3 233333 6778999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
..+..|...|.++.|+|++..+++++ .|+.+++||....... ... .+ ...+. ...+++++++
T Consensus 177 ~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~--~~~-~~-------~~~v~--~~~~s~~~~~ 238 (337)
T 1gxr_A 177 RQFQGHTDGASCIDISNDGTKLWTGG------LDNTVRSWDLREGRQL--QQH-DF-------TSQIF--SLGYCPTGEW 238 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEE--EEE-EC-------SSCEE--EEEECTTSSE
T ss_pred eeeecccCceEEEEECCCCCEEEEEe------cCCcEEEEECCCCceE--eee-cC-------CCceE--EEEECCCCCE
Confidence 99999999999999999999999988 8999999998753110 000 00 11122 2334577889
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeeeccc----------ccccccCCCCCceeeec-------------cceeeEEecCCC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINIHKF----------HVAIPNADEQGTCRLLN-------------ASIYKVALSKDL 233 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i~~~----------~~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg 233 (763)
+++|+.||.|++|+...........+.. .....+++.++.+++|+ ..|.+++|+||+
T Consensus 239 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTS
T ss_pred EEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCC
Confidence 9999999999999876544332222111 11123555677888886 467888999999
Q ss_pred CEEEEEeecC
Q 004298 234 FHLTVLCSGQ 243 (763)
Q Consensus 234 ~~Llv~~~d~ 243 (763)
+++++++.++
T Consensus 319 ~~l~~~~~dg 328 (337)
T 1gxr_A 319 KYIVTGSGDK 328 (337)
T ss_dssp CEEEEEETTS
T ss_pred CEEEEecCCC
Confidence 8888877665
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-19 Score=188.97 Aligned_cols=213 Identities=14% Similarity=0.191 Sum_probs=154.4
Q ss_pred CCCeEEEEEcCC----CCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPE----KDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~----~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g 93 (763)
...|.+++|+|+ +.++++++.||.|++|++ +++.+..+. |...|++++|+| ++++|++|+.||.|++||++++
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 356999999999 679999999999999999 677777776 888999999999 9999999999999999999999
Q ss_pred eEEEEe---cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCC-------------c-ccC---
Q 004298 94 KLLRSL---KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPG-------------L-VSG--- 151 (763)
Q Consensus 94 ~~~~~l---~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~-------------~-~s~--- 151 (763)
+.+..+ ..|...|.++.|+|++..+++++ .|+.+++||....... +.. . ...
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG------MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEE------TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEec------CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 999988 68999999999999999999998 8999999998742000 000 0 000
Q ss_pred CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee---------------eeeeeeccc------------
Q 004298 152 DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP---------------IGKINIHKF------------ 204 (763)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~---------------ig~~~i~~~------------ 204 (763)
...........+..+.+. ++++++++.||.|++|+..... +..+..+..
T Consensus 223 ~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL----GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp SEEECSSCSSCCCEEEEE----TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred ccccccCCcceEEEEEEc----CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence 000000011222333332 4588888999999999865421 222221111
Q ss_pred ccccccCCCCCceeeec--------------------cceeeEEecCCCCEEEEEeecC
Q 004298 205 HVAIPNADEQGTCRLLN--------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 205 ~~~~~s~~~~~~~~l~~--------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
...+.+++.++.+++|+ ..|.+++|+|||+.|++++.|+
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 11123455677777775 3578899999999999887765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=190.41 Aligned_cols=197 Identities=21% Similarity=0.214 Sum_probs=150.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++++.|++|++|++ +++....+.+...+.+++|+| +|++|++|+.||.|++||+++++.+..+
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence 45999999999999999999999999999 667777777888899999999 9999999999999999999999988777
Q ss_pred -------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC----------CcccCCcccccCCccc
Q 004298 100 -------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP----------GLVSGDTGFTDDSEDS 162 (763)
Q Consensus 100 -------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~----------~~~s~~~~~~~~~~~~ 162 (763)
.+|...|.+++|+|++..+++++ .|+++++||......... ....+|...
T Consensus 246 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s------~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~------- 312 (393)
T 1erj_A 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGS------LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF------- 312 (393)
T ss_dssp C------CCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEEC---------------CEEEEEECCSSC-------
T ss_pred cccccCCCCCCCCEEEEEECCCCCEEEEEe------CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc-------
Confidence 57889999999999999999998 899999999875311100 001122221
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecC------CCCE
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK------DLFH 235 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp------Dg~~ 235 (763)
+ ....+++++.+|++|+.||.|++|+..... +..+ +.+...|.+++|++ +++.
T Consensus 313 v--~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l------------------~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 313 V--LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML------------------QGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp E--EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE------------------ECCSSCEEEEEECSSCTTCTTCEE
T ss_pred E--EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE------------------CCCCCCEEEEEecCCcCcCCCCCE
Confidence 1 233455777899999999999999865432 1222 11224577888775 6788
Q ss_pred EEEEeecCccccccCCCCCCcEEEEEee
Q 004298 236 LTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 236 Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
++.++.|+ .++++.+.
T Consensus 373 l~sgs~Dg------------~i~iW~~~ 388 (393)
T 1erj_A 373 FATGSGDC------------KARIWKYK 388 (393)
T ss_dssp EEEEETTS------------EEEEEEEE
T ss_pred EEEECCCC------------cEEECccc
Confidence 88777665 77777665
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=184.59 Aligned_cols=200 Identities=20% Similarity=0.130 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|+|++++||+++.||.|++|++ +++.+..+. |...|.+++|+|+|++|++++.||.|++||+++++.+..+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 112 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 34999999999999999999999999998 777777776 7889999999999999999999999999999999999988
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcc-cC-CcccccCCcc--cccceecccCCCee
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV-SG-DTGFTDDSED--SFRELANSSHQRFS 175 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~-s~-~~~~~~~~~~--~~~~~~~~~~~~~~ 175 (763)
. |...|.++.|+|++..+++++.+. ...++.+++|+............ .. .......... .+. ...++++++
T Consensus 113 ~-~~~~v~~~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 188 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT--VAGWSTKGK 188 (369)
T ss_dssp E-CSSCEEEEEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE--EEEECGGGC
T ss_pred e-cCCCeEEEEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee--EEEEcCCCC
Confidence 7 789999999999999998886110 01239999998765321110000 00 0000000000 222 233456788
Q ss_pred EEEEEcCCCcEEEEEcCc--eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKDGSICFNIFGI--FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~--~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+++|+.||.|++|+... .....+. .....|.+++|+||++.+++++.++
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSID------------------LHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEE------------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEe------------------cCCCceeEEEECCCCCEEEEecCCc
Confidence 999999999999999765 2222222 1224688999999999999888776
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=188.25 Aligned_cols=214 Identities=12% Similarity=0.097 Sum_probs=157.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.|.+++|+|+++++|+++.|+.|++|++... .+..+. |...|++++|+|+|++|++|+.||.|++||+++++....
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee
Confidence 3999999999999999999999999999554 566664 788999999999999999999999999999999876554
Q ss_pred --ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCCe
Q 004298 99 --LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 99 --l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
+..|...|.++.|+|++..+++++ .|+.+++|+....... ......++. ..+..+ .+++++
T Consensus 90 ~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~~~~~~~~-------~~i~~~--~~~~~~ 154 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNEKKFAVGS------GSRVISICYFEQENDWWVCKHIKKPIR-------STVLSL--DWHPNS 154 (372)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEE------TTSSEEEEEEETTTTEEEEEEECTTCC-------SCEEEE--EECTTS
T ss_pred EEeecCCCceeEEEECCCCCEEEEEe------CCCEEEEEEecCCCcceeeeeeecccC-------CCeeEE--EEcCCC
Confidence 367889999999999999999998 8999999998753210 000001111 122233 345677
Q ss_pred eEEEEEcCCCcEEEEEcCc-------------------eeeeeeeec----------ccccccccCCCCCceeeec----
Q 004298 175 SILCSGDKDGSICFNIFGI-------------------FPIGKINIH----------KFHVAIPNADEQGTCRLLN---- 221 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~-------------------~~ig~~~i~----------~~~~~~~s~~~~~~~~l~~---- 221 (763)
+++++|+.||.|++|+... ..+..+..+ .....+.+++.++.+++|+
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 8999999999999999531 112222111 1111234566788888887
Q ss_pred ----------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 ----------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
.+|.+++|+||++.++++ .++ .++++.++.
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~------------~i~i~~~~~ 274 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDC------------FPVLFTYDS 274 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTS------------SCEEEEEET
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCC------------eEEEEEccC
Confidence 368899999998876655 444 667777665
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=183.99 Aligned_cols=215 Identities=13% Similarity=0.228 Sum_probs=154.2
Q ss_pred CCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcc--CceE-EEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPE---KDLLAMATEDSKILLHRFN--WQRL-WTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~---~~lLA~~s~Dg~V~v~~l~--~~~v-~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.+.|.+++|+|+ +++||+++.||.|++|++. ++.+ ..+. |...|++++|+|+|++|++|+.||.|++||++++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 456999999999 6999999999999999994 5554 3333 7889999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEe--ecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc-----------c----
Q 004298 94 KLLRSLKSHTVAVVCLNW--EEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF-----------T---- 156 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~w--s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~-----------~---- 156 (763)
+.+. +..|...|+++.| ++++..+++++ .|+.+++||....... .....+... .
T Consensus 119 ~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 3mmy_A 119 QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS------WDKTLKFWDTRSSNPM--MVLQLPERCYCADVIYPMAVVATAE 189 (368)
T ss_dssp EEEE-EEECSSCEEEEEEEECSSCEEEEEEE------TTSEEEEECSSCSSCS--EEEECSSCEEEEEEETTEEEEEEGG
T ss_pred Ccee-eccccCceEEEEEEeCCCCCEEEEcc------CCCcEEEEECCCCcEE--EEEecCCCceEEEecCCeeEEEeCC
Confidence 8776 4579999999999 88999899988 8999999998753111 000000000 0
Q ss_pred -------------------cCCccccccee--cccCCCeeEEEEEcCCCcEEEEEcCcee--------------------
Q 004298 157 -------------------DDSEDSFRELA--NSSHQRFSILCSGDKDGSICFNIFGIFP-------------------- 195 (763)
Q Consensus 157 -------------------~~~~~~~~~~~--~~~~~~~~~L~sgs~DG~I~lw~~~~~~-------------------- 195 (763)
.........+. .......+.+++|+.||.|++|++....
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 00000001111 1111123449999999999999876531
Q ss_pred ------eeeeeecccccccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCc
Q 004298 196 ------IGKINIHKFHVAIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQL 244 (763)
Q Consensus 196 ------ig~~~i~~~~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l 244 (763)
+..+..+.....+.+++.++.+++|+ .+|.+++|+|||++|++++.++.
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW 338 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence 11222222122344677889999997 46899999999999999988763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=183.92 Aligned_cols=204 Identities=11% Similarity=0.058 Sum_probs=151.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEEe---cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWTI---SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~~---~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..|.+++|+|+++++++++ ||.|++|++.. + .+..+ .+...|.+++|+|+|++|++|+.||.|++||+++++
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 4499999999999999998 99999999942 2 22222 477899999999999999999999999999999887
Q ss_pred --EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 95 --LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 95 --~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
....+..|...|.++.|+|++..+++++ .|+.+++||..... ......++. ..+..+ .+++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~v~~~d~~~~~--~~~~~~~~~-------~~i~~~--~~~~ 193 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCC------SDGNIAVWDLHNQT--LVRQFQGHT-------DGASCI--DISN 193 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCS-------SCEEEE--EECT
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCc--eeeeeeccc-------CceEEE--EECC
Confidence 6677888999999999999999999988 89999999987531 111111121 122223 3456
Q ss_pred CeeEEEEEcCCCcEEEEEcCceee-eeee---------ecccccccccCCCCCceeeec-------------cceeeEEe
Q 004298 173 RFSILCSGDKDGSICFNIFGIFPI-GKIN---------IHKFHVAIPNADEQGTCRLLN-------------ASIYKVAL 229 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~~i-g~~~---------i~~~~~~~~s~~~~~~~~l~~-------------~~I~~v~~ 229 (763)
+++.+++++.||.|++|+...... ..+. ..........++.++.+++|+ ..|.+++|
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~ 273 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEE
Confidence 778999999999999998765322 2221 111111123445667788776 46889999
Q ss_pred cCCCCEEEEEeecC
Q 004298 230 SKDLFHLTVLCSGQ 243 (763)
Q Consensus 230 SpDg~~Llv~~~d~ 243 (763)
+||++++++++.++
T Consensus 274 ~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 274 AYCGKWFVSTGKDN 287 (337)
T ss_dssp CTTSSEEEEEETTS
T ss_pred CCCCCEEEEecCCC
Confidence 99999998887766
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=198.88 Aligned_cols=204 Identities=23% Similarity=0.305 Sum_probs=162.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
...|.+++|+|+++++++++.|+.|++|+.+++.+..+. |...|.+++|+|||++|++|+.||.|++||. +++.+..+
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~ 381 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 381 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEe
Confidence 345999999999999999999999999999888877765 7789999999999999999999999999995 68889999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
..|...|++++|+|+++++++++ .|+.+++|+.... ......++... +. ...+++++.+|++
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~------~d~~v~~~~~~~~---~~~~~~~~~~~-------v~--~~~~s~d~~~l~~ 443 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASAS------DDKTVKLWNRNGQ---LLQTLTGHSSS-------VW--GVAFSPDDQTIAS 443 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEE------TTSEEEEECTTCC---EEEEEECCSSC-------EE--EEEECTTSSEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEe------CCCEEEEEeCCCC---EEEEecCCCCC-------eE--EEEECCCCCEEEE
Confidence 99999999999999999999998 8999999996432 11111222222 22 2335577789999
Q ss_pred EcCCCcEEEEEcCceeeeeeeeccccc----------ccccCCCCCceeeec-------------cceeeEEecCCCCEE
Q 004298 180 GDKDGSICFNIFGIFPIGKINIHKFHV----------AIPNADEQGTCRLLN-------------ASIYKVALSKDLFHL 236 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~~i~~~~~----------~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~~L 236 (763)
++.||+|++|+........+..+.... ...+++.++.+++|+ .+|.+++|||||++|
T Consensus 444 ~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 444 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 999999999986654444433322211 123566788899986 468999999999999
Q ss_pred EEEeecC
Q 004298 237 TVLCSGQ 243 (763)
Q Consensus 237 lv~~~d~ 243 (763)
++++.|+
T Consensus 524 ~s~~~dg 530 (577)
T 2ymu_A 524 ASASDDK 530 (577)
T ss_dssp EEEETTS
T ss_pred EEEECcC
Confidence 9888776
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-19 Score=193.50 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=154.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|.+++|+|++++|++++.|+.|++|++ +++.+..+. |...|.+++|+|||++|++|+.||.|++||+++++.+..
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 456999999999999999999999999999 666676665 788999999999999999999999999999999999998
Q ss_pred eccc---CCce---------------------eEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcc
Q 004298 99 LKSH---TVAV---------------------VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTG 154 (763)
Q Consensus 99 l~~h---~~~V---------------------~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~ 154 (763)
+..| ...| .++.|+|++..+++++ .|+.+++||........ ....++.
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~-~~~~~~~- 290 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH------VSGVITVHNVFSKEQTI-QLPSKFT- 290 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE------TTSCEEEEETTTCCEEE-EECCTTS-
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc------CCCeEEEEECCCCceeE-EcccccC-
Confidence 8753 3344 4455577888888887 89999999987531110 0001111
Q ss_pred cccCCcccccceecccCCCee-EEEEEcCCCcEEEEEcCce--eeeeeeec-ccc---------cccccCCCCCceeeec
Q 004298 155 FTDDSEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIF--PIGKINIH-KFH---------VAIPNADEQGTCRLLN 221 (763)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~--~ig~~~i~-~~~---------~~~~s~~~~~~~~l~~ 221 (763)
..+..+ .+++++. +|++|+.||.|++|+.... ++..+..+ ..+ ..+.+++.++.+++|+
T Consensus 291 ------~~v~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 291 ------CSCNSL--TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp ------SCEEEE--EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred ------CCceeE--EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 122223 3456666 9999999999999987653 23333331 111 1234677889999997
Q ss_pred -----------------------cceeeEEecCCCC---EEEEEeecC
Q 004298 222 -----------------------ASIYKVALSKDLF---HLTVLCSGQ 243 (763)
Q Consensus 222 -----------------------~~I~~v~~SpDg~---~Llv~~~d~ 243 (763)
..|.+++|+||++ .+++++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 2477899999999 788877655
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=182.81 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=160.7
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEccC-c-----eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFNW-Q-----RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~-~-----~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|++++|+|+ +++||+|+.|++|+||++.. + ....+. |...|.+++|+|||++|++|+.||.|++|+...+
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~ 118 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence 45999999998 68999999999999999832 2 233333 7789999999999999999999999999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC---CCCCccc----------CCcc-ccc--
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP---QMPGLVS----------GDTG-FTD-- 157 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~---~l~~~~s----------~~~~-~~~-- 157 (763)
........+...+..+.+++++..+++++ .|+.+++||...... ....+.. +... +..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGS------RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ceeeeecCCCCceeEEEEeecCccceeec------CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 98888888889999999999999999988 899999998754210 0000000 0000 000
Q ss_pred --------------------CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeeccc--------cccc
Q 004298 158 --------------------DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKF--------HVAI 208 (763)
Q Consensus 158 --------------------~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~--------~~~~ 208 (763)
.....+. ...+++++++|++|+.||+|++|+...... ..+..+.. ....
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLN--TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEE--EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEE--EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCce
Confidence 0001111 223467788999999999999998765422 22221110 0122
Q ss_pred ccCCCCCceeeec-----------------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 209 PNADEQGTCRLLN-----------------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 209 ~s~~~~~~~~l~~-----------------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.+++.++.+++|+ ..|.+++|||||++|++++.|+ .|+++.+.+.
T Consensus 271 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg------------~v~iW~~~tG 338 (340)
T 4aow_A 271 LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN------------LVRVWQVTIG 338 (340)
T ss_dssp EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS------------CEEEEEEEC-
T ss_pred eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC------------EEEEEeCCCc
Confidence 3445677888886 3588999999999999888766 7888877653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-19 Score=210.53 Aligned_cols=206 Identities=11% Similarity=0.096 Sum_probs=159.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.|.+++|||+++++|+++.||.|.||++ +++.+..+. |...|++++|+|||++|++|+.||.|++||+.+++.+..+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 34999999999999999999999999998 666777766 7889999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC-CeeEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ-RFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ 178 (763)
.+|...|++++|+|+++.+++++ .|+.+++|+...... ......++... +.. ..+++ +++.++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~~~-~~~~~~~~~~~-------v~~--~~~~p~~~~~l~ 157 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWA-LEQTFEGHEHF-------VMC--VAFNPKDPSTFA 157 (814)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEE------TTSEEEEEEGGGTSE-EEEEEECCSSC-------EEE--EEEETTEEEEEE
T ss_pred ecCCCCEEEEEEeCCCCEEEEEc------CCCEEEEEECCCCce-EEEEEcCCCCc-------EEE--EEEEcCCCCEEE
Confidence 99999999999999999999988 899999999764211 11111122221 222 23445 678999
Q ss_pred EEcCCCcEEEEEcCcee-eeeeee-----------cc--cccccccCCCCCceeeec--------------cceeeEEec
Q 004298 179 SGDKDGSICFNIFGIFP-IGKINI-----------HK--FHVAIPNADEQGTCRLLN--------------ASIYKVALS 230 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~-ig~~~i-----------~~--~~~~~~s~~~~~~~~l~~--------------~~I~~v~~S 230 (763)
+|+.||+|++|+.+... ...+.. .. ......+++.++.+++|+ ..|.+++|+
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99999999999865321 111111 10 111233566778888886 468899999
Q ss_pred CCCCEEEEEeecC
Q 004298 231 KDLFHLTVLCSGQ 243 (763)
Q Consensus 231 pDg~~Llv~~~d~ 243 (763)
|+|+.+++++.++
T Consensus 238 ~~~~~l~~~~~dg 250 (814)
T 3mkq_A 238 PTLPIIISGSEDG 250 (814)
T ss_dssp SSSSEEEEEETTS
T ss_pred CCCCEEEEEeCCC
Confidence 9999998887765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=195.85 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=136.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC------CCeEEEEEc-cCceE-----EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATE------DSKILLHRF-NWQRL-----WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~------Dg~V~v~~l-~~~~v-----~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..|.+++|||||.+||+++. |+.|++|+. ++... ....|...|.+++|+||+++ ++++.||+|+|||
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd 121 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWE 121 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEee
Confidence 34999999999999999997 778999987 33322 22346778999999999865 4678899999999
Q ss_pred ccCCeEEE----EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 90 VENGKLLR----SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 90 ve~g~~~~----~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
+.+++... ...+|...|++++|+|+++++++++ .|+++++||..... ......++... +..
T Consensus 122 ~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs------~dg~v~iwd~~~~~--~~~~~~~h~~~-------v~~ 186 (357)
T 4g56_B 122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG------KDFSVKVWDLSQKA--VLKSYNAHSSE-------VNC 186 (357)
T ss_dssp -------CCCCEEECCCSSCEEEEEECSSSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCSSC-------EEE
T ss_pred ccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe------CCCeEEEEECCCCc--EEEEEcCCCCC-------EEE
Confidence 99887543 3347899999999999999999998 89999999987531 11111222222 223
Q ss_pred eecccCCCe-eEEEEEcCCCcEEEEEcCceee-ee------------eeeccc-ccccccCCCCCceeeec---------
Q 004298 166 LANSSHQRF-SILCSGDKDGSICFNIFGIFPI-GK------------INIHKF-HVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 166 ~~~~~~~~~-~~L~sgs~DG~I~lw~~~~~~i-g~------------~~i~~~-~~~~~s~~~~~~~~l~~--------- 221 (763)
+.+ ++++ .++++++.||+|++|+...... .. +..+.. ..-+.+++.++.+++|+
T Consensus 187 v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 187 VAA--CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEE--CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred EEE--ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 333 3333 4789999999999998654211 11 111110 11123566788899987
Q ss_pred -----cceeeEEecCCCCE-EEEEeecC
Q 004298 222 -----ASIYKVALSKDLFH-LTVLCSGQ 243 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~-Llv~~~d~ 243 (763)
..|.+++|||++.. |+.++.|+
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 46899999999865 55555555
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=204.65 Aligned_cols=193 Identities=16% Similarity=0.135 Sum_probs=147.4
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEccC-c-----eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRFNW-Q-----RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~-~-----~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.+.|++++|+|++ ++|++|+.|++|++|++.. . ....+ .|...|.+++|+|||++|++|+.||+|+|||+.+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 3459999999975 8999999999999999842 1 12223 3788999999999999999999999999999999
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
++.++.+.+|...|.+++|+|++..+++++ .|+++++||...... .+.....+|.. .+..+.+.++
T Consensus 462 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~D~~i~iwd~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~ 528 (694)
T 3dm0_A 462 GVSTRRFVGHTKDVLSVAFSLDNRQIVSAS------RDRTIKLWNTLGECKYTISEGGEGHRD-------WVSCVRFSPN 528 (694)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSCEEEEE------TTSCEEEECTTSCEEEEECSSTTSCSS-------CEEEEEECSC
T ss_pred CcceeEEeCCCCCEEEEEEeCCCCEEEEEe------CCCEEEEEECCCCcceeeccCCCCCCC-------cEEEEEEeCC
Confidence 999999999999999999999999999998 899999999754210 01111112222 2333444444
Q ss_pred CCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.....+++|+.||+|++|+......... +.-+.+.|.+++|||||+.+++++.|+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~-----------------~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRST-----------------LAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEE-----------------ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEE-----------------EcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 4446899999999999999765322111 111234688999999999998888776
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=187.21 Aligned_cols=213 Identities=12% Similarity=0.049 Sum_probs=158.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
.+.|.+++|+| +++++++++.|+.|++|++.++.+..+. +...|.+++|+|+|++|++|+.||.|++||+ +++.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 35599999999 7899999999999999999877766664 3367999999999999999999999999999 5888
Q ss_pred EEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCC
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+..+..|...|.+++|+|++. .+++++ .|+.+++||....... .... .++. ..+..+ .+++
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~-~~~~-------~~v~~~--~~s~ 260 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSS------VDATVKLWDLRNIKDKNSYIAE-MPHE-------KPVNAA--YFNP 260 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEE------TTSEEEEEEGGGCCSTTCEEEE-EECS-------SCEEEE--EECT
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEe------CCCEEEEEeCCCCCcccceEEE-ecCC-------CceEEE--EEcC
Confidence 999999999999999999998 888888 8999999998752111 1000 0121 122223 3456
Q ss_pred -CeeEEEEEcCCCcEEEEEcCceee-eeeeeccc--------------------------ccccccCCCCCceeeec---
Q 004298 173 -RFSILCSGDKDGSICFNIFGIFPI-GKINIHKF--------------------------HVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 173 -~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~--------------------------~~~~~s~~~~~~~~l~~--- 221 (763)
++++|++++.||.|++|+...... ..+..+.. .... +++.++.+++|+
T Consensus 261 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANS 339 (383)
T ss_dssp TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCC
Confidence 778999999999999998764321 11111100 0011 456788899997
Q ss_pred -------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 222 -------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 -------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
..+..++|+|||+.|++++ |+ .++++.++.
T Consensus 340 ~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~------------~i~iw~~~~ 382 (383)
T 3ei3_B 340 GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF------------NILIWNRED 382 (383)
T ss_dssp CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT------------EEEEEECC-
T ss_pred CceeeeecCCCCCceEEEEEEecCccEEEEec-CC------------cEEEEecCC
Confidence 1245569999999888774 54 677777653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-18 Score=178.52 Aligned_cols=212 Identities=18% Similarity=0.255 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..+++|||++ +||+|. |++|+||++ +++.+..+. |+..|++++|+|+|++|++|+.||+|++||+++++.++.+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999875 788765 899999999 677665553 6778999999999999999999999999999999888776
Q ss_pred cccC-----------------------------------------CceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 100 KSHT-----------------------------------------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 100 ~~h~-----------------------------------------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
.+|. ..+.++.|.+++..+++++ .|+++++||.
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~ 179 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG------NDNLVNVWPS 179 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEES
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe------cCcceeEEEC
Confidence 6544 4455555666666666665 7899999988
Q ss_pred CCCCCCCC--CcccCCcccccCCcccccceeccc-CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccc----------
Q 004298 139 APRIPQMP--GLVSGDTGFTDDSEDSFRELANSS-HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFH---------- 205 (763)
Q Consensus 139 ~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~---------- 205 (763)
........ .....+. ..+..+.+.. ....-.+++|+.+++|++|+...........+...
T Consensus 180 ~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQ-------GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 252 (318)
T ss_dssp SCBTTBSCCSEEECCCC-------SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTT
T ss_pred CCCcccccceeeecccC-------CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccc
Confidence 75321111 0001111 1112222222 23344556788899999998665433222211111
Q ss_pred cc--cccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEe
Q 004298 206 VA--IPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVL 262 (763)
Q Consensus 206 ~~--~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~l 262 (763)
.. ..++..++.+++|+ +.|.+++|||||++|+.++.|+ .|+++.+
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~------------~v~iWd~ 313 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE------------TLRLWRC 313 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT------------EEEEECC
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC------------eEEEEEC
Confidence 01 12345678888886 5799999999999999888776 6777754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=192.14 Aligned_cols=199 Identities=12% Similarity=0.090 Sum_probs=146.1
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMAT--EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
..+.+++|||||+++|+++ .|++|+||++ +++.+..+.|...|.+++|+|||+++++++.| .+++|+..+++.+..
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIAR 212 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEE
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceee
Confidence 3488999999999987655 6899999999 77888888888999999999999999999855 566677777766543
Q ss_pred --ecccCCceeEEEeecCCCceeccCCCCCcccCC----ceeecCCCCCCCCCC--CcccCCcccccCCcccccceeccc
Q 004298 99 --LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR----TSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 99 --l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~----~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
...|...|.+++|+|++..+++++ .++ .++.|+......... ....++.. .+ ...++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~V--~~~~~ 277 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAAS------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-------GI--TSMDV 277 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEE------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-------CE--EEEEE
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEe------cCCcceeEEeecccccceecceeeeeecCCCC-------Ce--EeEEE
Confidence 456888999999999999998886 444 466777653211100 01112211 12 23346
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCcccccc
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEEL 249 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~ 249 (763)
++++++|++|+.||+|++|+..... +..+. +.+..+|.+++|||||++|+.++.|+
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-----------------~gH~~~V~~v~fSpdg~~laS~S~D~------ 334 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFK-----------------QAHSFAITEVTISPDSTYVASVSAAN------ 334 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEET-----------------TSSSSCEEEEEECTTSCEEEEEETTS------
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEec-----------------CcccCCEEEEEECCCCCEEEEEeCCC------
Confidence 6888999999999999999976543 22220 11234699999999999999988776
Q ss_pred CCCCCCcEEEEEeecc
Q 004298 250 GGHGMHGLHCLVLDTS 265 (763)
Q Consensus 250 ~~~~~~~l~~~~ld~~ 265 (763)
.|+++.+..+
T Consensus 335 ------tvrvw~ip~~ 344 (365)
T 4h5i_A 335 ------TIHIIKLPLN 344 (365)
T ss_dssp ------EEEEEECCTT
T ss_pred ------eEEEEEcCCC
Confidence 7888877544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=194.22 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=137.5
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-Cce--EEEe-cCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN-WQR--LWTI-SPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-~~~--v~~~-~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|++++|||+ +++||+|+.||.|+||++. ++. +..+ .|...|++++|+| ||++|++|+.||+|++||++++..
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 35999999994 5799999999999999993 332 3333 3788999999998 799999999999999999986654
Q ss_pred EEEecc--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 96 LRSLKS--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 96 ~~~l~~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
...... +...+.+++|+|++.++++|+ .|+.+++||...+. .....+|.. .+..+. +++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~------~dg~i~~wd~~~~~---~~~~~~h~~-------~v~~v~--~~p~ 261 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGD------NVGNVILLNMDGKE---LWNLRMHKK-------KVTHVA--LNPC 261 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEEC------SSSBEEEEESSSCB---CCCSBCCSS-------CEEEEE--ECTT
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEe------CCCcEeeeccCcce---eEEEecccc-------eEEeee--ecCC
Confidence 333332 335688999999999999998 89999999986531 111222322 222333 3344
Q ss_pred e-eEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 174 F-SILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 174 ~-~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+ .++++|+.||+|++|+......... . ....-+..+|.+++|||||++|++++.|+
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~--------~------~~~~~h~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKAS--------F------LYSLPHRHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSC--------C------SBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred CceEEEEecCcceeeEEecccccccce--------E------EEeeeccccccceeECCCCCeeEEEcCCC
Confidence 3 4899999999999998654321110 0 00011234688999999999999988876
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=192.22 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=123.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.+++|+| ++++|++++.||+|++|++.++.+..+. +...+.+++|+|+|++|++|+.||.|++||++ ++.+
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~ 243 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL 243 (435)
T ss_dssp CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee
Confidence 4599999999 6899999999999999999776655443 23457899999999999999999999999986 5667
Q ss_pred EEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCC-CCcccCCcccccCCcccccceecccCCCe
Q 004298 97 RSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+.+|...|++++|+|++. ++++++ .|+++++||.+...... .....+|... + ...++++++
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~-------v--~~~~~spdg 308 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATAS------VDQTVKIWDLRQVRGKASFLYSLPHRHP-------V--NAACFSPDG 308 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEE------TTSBCCEEETTTCCSSSCCSBCCBCSSC-------E--EECCBCTTS
T ss_pred EEEecccceEEeeeecCCCceEEEEec------CcceeeEEecccccccceEEEeeecccc-------c--cceeECCCC
Confidence 78899999999999999986 567777 89999999987532111 1111122222 2 223456788
Q ss_pred eEEEEEcCCCcEEEEEcCce
Q 004298 175 SILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~ 194 (763)
++|++|+.||+|++|+....
T Consensus 309 ~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 309 ARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp SEEEEEESSSCEEEEESSSS
T ss_pred CeeEEEcCCCEEEEEECCCC
Confidence 89999999999999987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=202.61 Aligned_cols=212 Identities=14% Similarity=0.107 Sum_probs=154.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++|+.||+|+||++ +++.+..+. |...|.+++|+|||++|++|+.||+|++||..........
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 45999999999999999999999999999 566666654 8889999999999999999999999999998654333222
Q ss_pred ---cccCCceeEEEeecCC--CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 100 ---KSHTVAVVCLNWEEDA--QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 100 ---~~h~~~V~~l~ws~~~--~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
.+|...|.|+.|+|++ ..+++++ .|+++++||.... .+.....+|...+ ....+++++
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~d~~v~vwd~~~~--~~~~~~~~h~~~v---------~~v~~spdg 573 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSAS------WDKTVKVWNLSNC--KLRSTLAGHTGYV---------STVAVSPDG 573 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEE------TTSCEEEEETTTC--CEEEEECCCSSCE---------EEEEECTTS
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEe------CCCeEEEEECCCC--cEEEEEcCCCCCE---------EEEEEeCCC
Confidence 4688899999999987 4688887 8999999998753 1112223333322 233456788
Q ss_pred eEEEEEcCCCcEEEEEcCcee-eeeeeecc----cc----cccccCCCCCceeeecc-----------------------
Q 004298 175 SILCSGDKDGSICFNIFGIFP-IGKINIHK----FH----VAIPNADEQGTCRLLNA----------------------- 222 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~----~~----~~~~s~~~~~~~~l~~~----------------------- 222 (763)
++|++|+.||+|++|+..... +..+..+. .. ......+.+..+++|+.
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccccccc
Confidence 899999999999999875432 11111110 00 01112234556788862
Q ss_pred ----------ceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEe
Q 004298 223 ----------SIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVL 262 (763)
Q Consensus 223 ----------~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~l 262 (763)
.+.+++|||||++|++++.|+ .|+++.+
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg------------~i~iW~i 691 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDG------------VIRVWGI 691 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTS------------EEEEEEC
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCC------------eEEEEec
Confidence 156789999999999888776 6777654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=194.34 Aligned_cols=184 Identities=14% Similarity=0.168 Sum_probs=135.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCC-----cEEEEEEccCCCEEEEEEcCCcEEEEEccCCe--
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGK-----SVTSLCWRPDGKAIAVGLEDGTITLHDVENGK-- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~-----~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~-- 94 (763)
..|.+++|||+|++||+++.||.|++|+..+ .+..+.|.. .|.+++|||||++||+|+.||+|+|||+.+++
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 4599999999999999999999999999654 444444333 59999999999999999999999999999885
Q ss_pred -----EEEEe----cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC-CCCcc-cCCcccccCCcccc
Q 004298 95 -----LLRSL----KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ-MPGLV-SGDTGFTDDSEDSF 163 (763)
Q Consensus 95 -----~~~~l----~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~-l~~~~-s~~~~~~~~~~~~~ 163 (763)
.+.++ .+|.+.|.+++|+|+| +++++ .|+++++|+....... ..... .++. ..+
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass------~D~tVrlWd~~~~~~~~~~~tL~~~h~-------~~V 229 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL------SNNSVFSMTVSASSHQPVSRMIQNASR-------RKI 229 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE------TTCCEEEECCCSSSSCCCEEEEECCCS-------SCC
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEe------CCCeEEEEECCCCccccceeeeccccc-------CcE
Confidence 36776 6777899999999999 55555 6999999998764311 00001 1222 223
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe--cCCCCEEEEEee
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL--SKDLFHLTVLCS 241 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~--SpDg~~Llv~~~ 241 (763)
..+.+. +++|++++ +|+|++|+......-.... -+.+.|..++| |||++.++++..
T Consensus 230 ~svaFs----g~~LASa~-~~tIkLWd~~~~~~~~~~~-----------------gh~~~V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 230 TDLKIV----DYKVVLTC-PGYVHKIDLKNYSISSLKT-----------------GSLENFHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp CCEEEE----TTEEEEEC-SSEEEEEETTTTEEEEEEC-----------------SCCSCCCEEEETTCSSCEEEEECSS
T ss_pred EEEEEE----CCEEEEEe-CCeEEEEECCCCeEEEEEc-----------------CCCceEEEEEeeeCCCCCEEEEEcC
Confidence 334443 36888887 6999999966544322211 01245788999 999988887765
Q ss_pred cC
Q 004298 242 GQ 243 (763)
Q Consensus 242 d~ 243 (763)
++
T Consensus 288 dG 289 (588)
T 2j04_A 288 TS 289 (588)
T ss_dssp CE
T ss_pred CC
Confidence 54
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=206.60 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=156.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---CceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCCe-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN---WQRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENGK- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g~- 94 (763)
+.|.+++|+|+++++|+|+.||.|+||++. ++.+..+. |...|++++|+|+ |++|++|+.||.|++||+.+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 349999999999999999999999999994 33444554 7889999999998 9999999999999999999987
Q ss_pred -EEEEecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 -LLRSLKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 -~~~~l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+..|...|+++.|+|+ +..+++++ .|+.+++||.............++.. .+..+.+.+.
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs------~dg~I~vwdl~~~~~~~~~~~~~~~~-------~v~~l~~~p~ 156 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVAS------SDGKVSVVEFKENGTTSPIIIDAHAI-------GVNSASWAPA 156 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEECCSSSCCCCEEEECCSS-------CEEEEEECCC
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEe------CCCcEEEEEeecCCCcceeEeecCCC-------ceEEEEecCc
Confidence 77788899999999999999 89999998 89999999987642221111122221 2223333221
Q ss_pred -----------CCeeEEEEEcCCCcEEEEEcCce-----eeeeee----------eccc---ccccccCCCCCceeeec-
Q 004298 172 -----------QRFSILCSGDKDGSICFNIFGIF-----PIGKIN----------IHKF---HVAIPNADEQGTCRLLN- 221 (763)
Q Consensus 172 -----------~~~~~L~sgs~DG~I~lw~~~~~-----~ig~~~----------i~~~---~~~~~s~~~~~~~~l~~- 221 (763)
++++++++|+.||+|++|+.... ....+. .+.. ...+.+++.++.+++|+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 15788999999999999976432 111111 1111 12234667788888886
Q ss_pred ------------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 ------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 ------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|||+++++++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 3477899999999999887766
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-18 Score=185.85 Aligned_cols=187 Identities=14% Similarity=0.207 Sum_probs=144.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-C-------ceEEEec-CCCcEEEEEEccCC-CEEEEEEcCCcEEEEEc
Q 004298 22 SQIKIAEWNP-EKDLLAMATEDSKILLHRFN-W-------QRLWTIS-PGKSVTSLCWRPDG-KAIAVGLEDGTITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~-------~~v~~~~-~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwdv 90 (763)
+.|.+++|+| ++++||+|+.||.|++|++. + +.+..+. |...|.+++|+|+| ++|++|+.||.|++||+
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 4599999999 99999999999999999994 3 3445554 78899999999998 69999999999999999
Q ss_pred cCCeEEEEe--cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcc-cCCcccccCCccccccee
Q 004298 91 ENGKLLRSL--KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV-SGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 91 e~g~~~~~l--~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~-s~~~~~~~~~~~~~~~~~ 167 (763)
++++.+..+ ..|...|.+++|+|++..+++++ .|+.+++||...... .... .++... .+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~~~~~~~~------~~~~~- 226 (402)
T 2aq5_A 162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC------RDKRVRVIEPRKGTV--VAEKDRPHEGT------RPVHA- 226 (402)
T ss_dssp TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE------TTSEEEEEETTTTEE--EEEEECSSCSS------SCCEE-
T ss_pred CCCCccEEEecCCCCCceEEEEECCCCCEEEEEe------cCCcEEEEeCCCCce--eeeeccCCCCC------cceEE-
Confidence 999999999 88999999999999999999998 899999999875311 0011 112111 11122
Q ss_pred cccCCCeeEEEEE---cCCCcEEEEEcCceee--eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 168 NSSHQRFSILCSG---DKDGSICFNIFGIFPI--GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 168 ~~~~~~~~~L~sg---s~DG~I~lw~~~~~~i--g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+.+++.++++| +.||.|++|+...... ....+. ....+..++|+|||+.+++++.
T Consensus 227 -~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 227 -VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----------------TSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp -EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----------------CCSSCEEEEEETTTTEEEEEET
T ss_pred -EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----------------CCCceeEEEEcCCCCEEEEEEc
Confidence 345678899999 8999999999765321 111100 1134778999999999987764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=191.92 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.++.++|+|+++++++++.|+.|++|++..... ..+.....+....|+|+|++|++|+.||.|++||+++++....+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 355789999999999999999999999854332 2223334455567899999999999999999999999999998899
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
|...|++++|+|++..+++++ .|+.+++||..... ......++... +..+ .++++++.|++|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s------~d~~i~iwd~~~~~--~~~~~~~h~~~-------v~~~--~~~~~~~~l~s~~ 200 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSS------QDMQLKIWSVKDGS--NPRTLIGHRAT-------VTDI--AIIDRGRNVLSAS 200 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTCC--CCEEEECCSSC-------EEEE--EEETTTTEEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEe------CCCeEEEEeCCCCc--CceEEcCCCCc-------EEEE--EEcCCCCEEEEEc
Confidence 999999999999999999998 89999999987531 11222233222 2223 3456778999999
Q ss_pred CCCcEEEEEcCce-eeeeeeecc----------------------------------cccccccCCCCCceeeec-----
Q 004298 182 KDGSICFNIFGIF-PIGKINIHK----------------------------------FHVAIPNADEQGTCRLLN----- 221 (763)
Q Consensus 182 ~DG~I~lw~~~~~-~ig~~~i~~----------------------------------~~~~~~s~~~~~~~~l~~----- 221 (763)
.||+|++|+.... ....+..+. ....+.+++.++.+++|+
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999987643 222222110 001123556778888887
Q ss_pred ----------cceeeEEecCCCC-EEEEEeecC
Q 004298 222 ----------ASIYKVALSKDLF-HLTVLCSGQ 243 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~-~Llv~~~d~ 243 (763)
..|.+++|+|+++ .+++++.++
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 3688999999999 777776665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=181.89 Aligned_cols=214 Identities=17% Similarity=0.268 Sum_probs=158.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc-CCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE-NGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve-~g~~~~~ 98 (763)
..|.+++|+|++++||+++.||.|.+|++ +++.+..+. |...|.+++| ++++|++|+.||.|++||++ .+..+..
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 212 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT 212 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE
Confidence 45999999999999999999999999999 566677765 7789999999 56899999999999999998 5677888
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...|.++.|+|++..+++++ .|+.+++||....... ....++. ..+..+.+.+. ...+++
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~--~~~~~~~-------~~v~~~~~~p~-~~~ll~ 276 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGG------NDNVVQIWDARSSIPK--FTKTNHN-------AAVKAVAWCPW-QSNLLA 276 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTCSSEE--EEECCCS-------SCCCEEEECTT-STTEEE
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEe------CCCeEEEccCCCCCcc--EEecCCc-------ceEEEEEECCC-CCCEEE
Confidence 999999999999999999999998 8999999998752111 0111111 22233444332 235777
Q ss_pred EEc--CCCcEEEEEcCcee-eeeeeec---------cccccccc--CCCCCceeeec----------------cceeeEE
Q 004298 179 SGD--KDGSICFNIFGIFP-IGKINIH---------KFHVAIPN--ADEQGTCRLLN----------------ASIYKVA 228 (763)
Q Consensus 179 sgs--~DG~I~lw~~~~~~-ig~~~i~---------~~~~~~~s--~~~~~~~~l~~----------------~~I~~v~ 228 (763)
+|+ .||.|++|+..... ...+... .......+ +..++.+++|+ ..|.+++
T Consensus 277 ~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 277 TGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp EECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 765 89999999865432 2222111 11111123 44678888886 3688899
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
|+|||+++++++.|+ .++++.+...
T Consensus 357 ~s~dg~~l~s~~~dg------------~i~iw~~~~~ 381 (401)
T 4aez_A 357 LSPDGRILSTAASDE------------NLKFWRVYDG 381 (401)
T ss_dssp ECTTSSEEEEECTTS------------EEEEEECCC-
T ss_pred ECCCCCEEEEEeCCC------------cEEEEECCCC
Confidence 999999999887765 7888877654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=177.37 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=99.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc----eEEEecCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEc-c
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQ----RLWTISPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDV-E 91 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~----~v~~~~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdv-e 91 (763)
+..+.|.+++|+|++++|++++.|+.|++|++ +++ ......|...|.+++|+|+|+ +|++|+.||.|++||+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 33456999999999999999999999999999 444 333445888999999999999 9999999999999999 8
Q ss_pred CCeEEEEecc--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 92 NGKLLRSLKS--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ~g~~~~~l~~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+++. ..+.+ |...|.++.|+| +..+++++ .|+.+++||...
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~------~d~~i~iwd~~~ 131 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG-DDKLIAAS------WDGLIEVIDPRN 131 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET-TTEEEEEE------TTSEEEEECHHH
T ss_pred CCce-EeccccCCCCceEEEEeCC-CCEEEEEc------CCCeEEEEcccc
Confidence 7765 67788 999999999999 88999888 899999999764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=178.52 Aligned_cols=219 Identities=13% Similarity=0.134 Sum_probs=160.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC-----CcEEEEEccCCe-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED-----GTITLHDVENGK- 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D-----g~V~lwdve~g~- 94 (763)
+.|.+++|+|++++|++++.||.|++|++ +++.+..+.+...|.+++|+|+|+++++++.+ |.|++||++++.
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 45999999999999999999999999999 67788888888999999999999999999999 999999998653
Q ss_pred ----------EEEEecccCC--ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 95 ----------LLRSLKSHTV--AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 95 ----------~~~~l~~h~~--~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
.+..+..|.. .+.+++|+|++..+++++ .|+.+++||........ .....+.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~-~~~~~~~~-------~ 220 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH------KDGKISKYDVSNNYEYV-DSIDLHEK-------S 220 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE------TTSEEEEEETTTTTEEE-EEEECCSS-------C
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc------CCCEEEEEECCCCcEeE-EEEecCCC-------c
Confidence 3344555665 999999999999999987 89999999987521111 11111211 2
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeee---------cccccccccCCCCC--------------cee
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINI---------HKFHVAIPNADEQG--------------TCR 218 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i---------~~~~~~~~s~~~~~--------------~~~ 218 (763)
+..+ .+++++++|++++.||.|++|+...... ..+.. .........++.++ .++
T Consensus 221 v~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 221 ISDM--QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred eeEE--EECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 2223 3456788999999999999998765322 22211 00000111122222 455
Q ss_pred eec--------------cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeeccccc
Q 004298 219 LLN--------------ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFS 268 (763)
Q Consensus 219 l~~--------------~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~ 268 (763)
+|+ ..|.+++|+|||+.|++++.|+ .++++.++...+.
T Consensus 299 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------------~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG------------FIRLHHFEKSYFD 350 (369)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS------------EEEEEEECHHHHT
T ss_pred EEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC------------eEEEEECccccch
Confidence 554 5789999999999999887766 8889988876543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-17 Score=179.31 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=163.2
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccC---CCEEEEEEcCCcEEEEEccCCe
Q 004298 20 VASQIKIAEWNP-EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPD---GKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 20 ~~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspD---G~~Lasg~~Dg~V~lwdve~g~ 94 (763)
....|.+++|+| ++.++++++.||.|++|++ +++.+..+.+...+.+++|+|. ++++++|+.||.|++||+++++
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 345699999999 7789999999999999999 6667777778889999999994 4599999999999999999999
Q ss_pred EEEEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCCCCCCc---cc----CCcccccCCcccccce
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL---VS----GDTGFTDDSEDSFREL 166 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~---~s----~~~~~~~~~~~~~~~~ 166 (763)
.+..+..|...|.++.|+|++.. +++++ .|+.+++||.+......... .. ............+..+
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATAS------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEc------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999999999999999999985 77887 89999999987532111100 00 0000001112223333
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecc----------------cccccccCCCCCceeeec---------
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHK----------------FHVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~----------------~~~~~~s~~~~~~~~l~~--------- 221 (763)
.+++++++|++|+.||.|++|+............. .......++.++.+++|+
T Consensus 252 --~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 252 --CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp --EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred --EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 34567889999999999999987653211100000 000111223455666665
Q ss_pred -----cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 222 -----ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
..|.+++|+|||++|++++.|+ .++++.++..
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg------------~i~iw~~~~~ 366 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDC------------NILAWVPSLY 366 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTS------------CEEEEEECC-
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCC------------eEEEEeCCCC
Confidence 5789999999999999888766 7888877764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-18 Score=180.52 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=122.3
Q ss_pred CCeEEEEEcCC----CCEEEEEeCCCeEEEEEcc-CceEEEec------CCCcEEEEEEccC----CCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNPE----KDLLAMATEDSKILLHRFN-WQRLWTIS------PGKSVTSLCWRPD----GKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP~----~~lLA~~s~Dg~V~v~~l~-~~~v~~~~------~~~~V~~l~wspD----G~~Lasg~~Dg~V~ 86 (763)
+.|.+++|+|+ ..++++++.++.|.+|++. ++.+..+. +...|.+++|+|+ |++|++|+.||.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 34999999994 4566666777799999994 66555443 5678999999999 77999999999999
Q ss_pred EEEccCCeEEEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcc---cCCcccccCCccc
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV---SGDTGFTDDSEDS 162 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~---s~~~~~~~~~~~~ 162 (763)
+||+++++.+..+.+|...|+++.|+| ++..+++++ .|+.+++||...... .... .++. ..
T Consensus 99 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~--~~~~~~~~~~~-------~~ 163 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS------KDHALRLWNIQTDTL--VAIFGGVEGHR-------DE 163 (366)
T ss_dssp EECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE------TTSCEEEEETTTTEE--EEEECSTTSCS-------SC
T ss_pred EEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe------CCCeEEEEEeecCeE--EEEeccccccc-------Cc
Confidence 999999999999999999999999999 889999998 899999999875311 0000 1121 22
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+..+ .++++++.|++|+.||.|++|+...
T Consensus 164 v~~~--~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 164 VLSA--DYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp EEEE--EECTTSSEEEEEETTSCEEEEESCS
T ss_pred eeEE--EECCCCCEEEEecCCCCEEEEECCC
Confidence 2233 3456778999999999999998664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=210.55 Aligned_cols=156 Identities=15% Similarity=0.185 Sum_probs=129.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|.+++|+|+++++|+|+.||+|++|++ +++.+..+. |...|.+++|+|||++||+|+.||.|++||+.+++.+..
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 345999999999999999999999999999 777888876 788999999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecC--CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LKSHTVAVVCLNWEED--AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~--~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+.+|...|.++.|+|+ +..+++++ .|+.+++||..... ......++... +. ...+++++++
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~------~d~~v~vwd~~~~~--~~~~~~~h~~~-------v~--~~~~sp~~~~ 757 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGS------NDFFLKLWDLNQKE--CRNTMFGHTNS-------VN--HCRFSPDDEL 757 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEE------TTSCEEEEETTSSS--EEEEECCCSSC-------EE--EEEECSSTTE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEe------CCCeEEEEECCCcc--hhheecCCCCC-------EE--EEEEecCCCE
Confidence 9999999999999994 45788887 89999999987531 11111222222 22 2334567789
Q ss_pred EEEEcCCCcEEEEEcCc
Q 004298 177 LCSGDKDGSICFNIFGI 193 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~ 193 (763)
+++|+.||+|++|+...
T Consensus 758 l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVRS 774 (1249)
T ss_dssp EEEEESSSEEEEEEGGG
T ss_pred EEEEECCCeEEEEeCCC
Confidence 99999999999998654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-18 Score=186.79 Aligned_cols=206 Identities=12% Similarity=0.009 Sum_probs=140.5
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCc-eEEE-----ec-CCCcEEEEEEcc--------CCCEEEEEEcCCcEEEEEccCCe
Q 004298 30 NPEKDLLAMATEDSKILLHRFNWQ-RLWT-----IS-PGKSVTSLCWRP--------DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l~~~-~v~~-----~~-~~~~V~~l~wsp--------DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+|++.++|+++.|++|+||+.... .... +. |...|++++|+| ||++||+|+.|++|+|||++++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 345668999999999999999443 3221 11 778999999998 89999999999999999999998
Q ss_pred EEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCccc--------------cc
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGF--------------TD 157 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~--------------~~ 157 (763)
.+..+..|...|.+++|+|++. .+++++ .|+++++||......... ......... ..
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGE------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEE------TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecC------CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 8888888999999999999875 788888 899999999876422111 000000000 00
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeee-e-----eeccc-------------------------cc
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGK-I-----NIHKF-------------------------HV 206 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~-~-----~i~~~-------------------------~~ 206 (763)
.....+..+.+ ..+++..+++++.|+++++|+....+.+. + .+... ..
T Consensus 252 ~~~~~v~~v~~-~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 4gq1_A 252 GIASSLANVRW-IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY 330 (393)
T ss_dssp CCSSSCSEEEE-ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTE
T ss_pred cccccceeeee-ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCE
Confidence 11112222222 23667899999999999999754322110 0 00000 00
Q ss_pred ccccCCCCCceeeec--------------cceeeEEecCCCCEEEEEeec
Q 004298 207 AIPNADEQGTCRLLN--------------ASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 207 ~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~~Llv~~~d 242 (763)
-..+++.++.+++|+ .+|.+++|||||++|++++.+
T Consensus 331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 331 FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 113556789999997 469999999999999988654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-18 Score=186.43 Aligned_cols=206 Identities=14% Similarity=0.167 Sum_probs=151.0
Q ss_pred CeEEEEEcCCCC-EEEEE----------eCCCeEEEEEccCc----eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 23 QIKIAEWNPEKD-LLAMA----------TEDSKILLHRFNWQ----RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~----------s~Dg~V~v~~l~~~----~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
.|.+++|+|++. ++|++ +.|+.|++|++... .+..+.|...|++++|+|||++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 378899999986 99999 88999999999432 4555668889999999999999999999999999
Q ss_pred EEccC----CeEEEEecccCCceeEEEeecC-CCceeccCCCCCcccCCceeecCCCCCC------CCC-CCcccCCccc
Q 004298 88 HDVEN----GKLLRSLKSHTVAVVCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRI------PQM-PGLVSGDTGF 155 (763)
Q Consensus 88 wdve~----g~~~~~l~~h~~~V~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~------~~l-~~~~s~~~~~ 155 (763)
||+.+ .+.+..+..|...|+++.|+|+ +..+++++ .|+.+++||..... ... .....++
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--- 164 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSS--- 164 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEEC------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS---
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEc------CCCeEEEEECCCCccccccccccccccccCC---
Confidence 99987 4588889999999999999998 78999998 89999999987642 110 0001111
Q ss_pred ccCCcccccceecccCCC-eeEEEEEcCCCcEEEEEcCcee-eeeeeec----------------cc-ccccccCCCCC-
Q 004298 156 TDDSEDSFRELANSSHQR-FSILCSGDKDGSICFNIFGIFP-IGKINIH----------------KF-HVAIPNADEQG- 215 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~----------------~~-~~~~~s~~~~~- 215 (763)
...+..+. ++++ ..++++|+.||.|++|+..... +..+..+ .. ...+.+++.++
T Consensus 165 ----~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 165 ----VDEVISLA--WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp ----SCCCCEEE--ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ----CCCeeEEE--eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 12233333 3454 5789999999999999876432 2222211 10 01122344454
Q ss_pred --ceeeec----------------cceeeEEecC-CCCEEEEEeecC
Q 004298 216 --TCRLLN----------------ASIYKVALSK-DLFHLTVLCSGQ 243 (763)
Q Consensus 216 --~~~l~~----------------~~I~~v~~Sp-Dg~~Llv~~~d~ 243 (763)
.+++|+ ..|.+++|+| +++.+++++.++
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 666665 3578899999 888888887766
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=180.54 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=142.1
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
...|.+++|+|++ +++|+|+.||.|++|++ +++....+. |...|.+++|+| ++++|++|+.||.|++||+++ +
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~ 151 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-S 151 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-C
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-C
Confidence 4569999999999 99999999999999999 455544443 788999999999 789999999999999999985 5
Q ss_pred EEEEeccc---CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 95 LLRSLKSH---TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 95 ~~~~l~~h---~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.+..+..| ...|.+++|+|++..+++++ .|+.+++||.... ......++.. .+..+ .++
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~---~~~~~~~h~~-------~v~~~--~~~ 213 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD------STGRLLLLGLDGH---EIFKEKLHKA-------KVTHA--EFN 213 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEE------TTSEEEEEETTSC---EEEEEECSSS-------CEEEE--EEC
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEEC------CCCCEEEEECCCC---EEEEeccCCC-------cEEEE--EEC
Confidence 55565544 47899999999999999998 8999999998532 1111122222 22233 345
Q ss_pred CCee-EEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecC-CCCEEEEEeecC
Q 004298 172 QRFS-ILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK-DLFHLTVLCSGQ 243 (763)
Q Consensus 172 ~~~~-~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp-Dg~~Llv~~~d~ 243 (763)
+++. ++++|+.||+|++|+...... +.. +. ..-....|.+++|+| ||+.+++++.++
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~--------------~~~~~~~v~~~~~s~~~~~~l~~~~~d~ 273 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSY-IA--------------EMPHEKPVNAAYFNPTDSTKLLTTDQRN 273 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EE--------------EEECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccce-EE--------------EecCCCceEEEEEcCCCCCEEEEEcCCC
Confidence 6666 899999999999999765211 000 00 001224688999999 999999888766
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=183.33 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=147.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe---------cCCCcEEEEEEccCC-CEEEEEEcCCcEEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI---------SPGKSVTSLCWRPDG-KAIAVGLEDGTITLHD 89 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~---------~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwd 89 (763)
...|.+++|+|+++++++| .|+.|++|++. +.+...+ .|...|++++|+|+| ++|++|+.||.|++||
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 3459999999999999998 79999999995 4444431 367889999999999 9999999999999999
Q ss_pred ccCCeE----EEEecccCC------------ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 90 VENGKL----LRSLKSHTV------------AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 90 ve~g~~----~~~l~~h~~------------~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
+++++. +..+..|.. .|.+++|+|+++++++++ . +.+++||.......+ ....++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~-~~v~iwd~~~~~~~~-~~~~~~~ 327 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD------Y-LSVKVWDLNMENRPV-ETYQVHE 327 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE------S-SEEEEEETTCCSSCS-CCEESCG
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee------C-CeEEEEeCCCCcccc-ceeeccc
Confidence 999887 788888876 899999999999999997 6 999999987521111 1122222
Q ss_pred ccccC------CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeeccccccc---------ccCCC--CCc
Q 004298 154 GFTDD------SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAI---------PNADE--QGT 216 (763)
Q Consensus 154 ~~~~~------~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~---------~s~~~--~~~ 216 (763)
..... .......+..++++++++|++|+.||.|++|+......-.+..+..+... ..++. ...
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence 21100 00001112245667888999999999999999776544333322211100 00000 000
Q ss_pred ee----eeccceeeEEecCCCCEEEEEeec
Q 004298 217 CR----LLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 217 ~~----l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+. -+...|..++|+|+|+.|++++.+
T Consensus 408 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 408 ISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp EEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred ccccccccCCceeEEEECCCCCEEEEEecc
Confidence 10 123568899999999999887654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=181.48 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=128.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|.+++|+|++..+++++.|++|++|++ +++.+..+. |...|.+++|+| +|++|++|+.||+|++||+++++++.
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 34999999999999999999999999999 666676665 788999999988 57899999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+.+|...|++++|+|++..+++++ .|+++++||.+..... .....+.. ...+ ....+++++.+|
T Consensus 235 ~~~~h~~~v~~v~~~p~~~~l~s~s------~D~~v~lwd~~~~~~~--~~~~~~~~-----~~~~--~~~~~s~~g~~l 299 (354)
T 2pbi_B 235 AFETHESDVNSVRYYPSGDAFASGS------DDATCRLYDLRADREV--AIYSKESI-----IFGA--SSVDFSLSGRLL 299 (354)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEE--EEECCTTC-----CSCE--EEEEECTTSSEE
T ss_pred EecCCCCCeEEEEEeCCCCEEEEEe------CCCeEEEEECCCCcEE--EEEcCCCc-----ccce--eEEEEeCCCCEE
Confidence 9999999999999999999999998 8999999998753110 00000000 0011 223456788899
Q ss_pred EEEcCCCcEEEEEcCc
Q 004298 178 CSGDKDGSICFNIFGI 193 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~ 193 (763)
++|+.||+|++|+...
T Consensus 300 ~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLK 315 (354)
T ss_dssp EEEETTSCEEEEETTT
T ss_pred EEEECCCcEEEEECCC
Confidence 9999999999998643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=180.84 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=161.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+.|.+++|+|++++||+++.||.|.+|+.+++.+..+. |...|.+++|+|+|++|++++.||.|++||+++++.+..+.
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence 36999999999999999999999999999888888887 77899999999999999999999999999999999999998
Q ss_pred ccCCc---------------eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 101 SHTVA---------------VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 101 ~h~~~---------------V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
.+... +.++.|++++. +++++ .++.+++|+..... ......++.. .+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~g~i~~~d~~~~~--~~~~~~~~~~-------~i~~ 252 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPG------PKGAIFVYQITEKT--PTGKLIGHHG-------PISV 252 (425)
T ss_dssp CC---------------CCCBSCCEEEETTE-EEEEC------GGGCEEEEETTCSS--CSEEECCCSS-------CEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCE-EEEEc------CCCeEEEEEcCCCc--eeeeeccCCC-------ceEE
Confidence 87776 99999999876 45555 69999999987531 1111112221 2222
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccc---------cccccCCCCCceeeec--------------
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFH---------VAIPNADEQGTCRLLN-------------- 221 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~---------~~~~s~~~~~~~~l~~-------------- 221 (763)
+. +++++++|++|+.||.|++|+..... ...+..+... ..+.+++.++.+++|+
T Consensus 253 ~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 253 LE--FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EE--EETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred EE--ECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 33 44666799999999999999865421 1111111110 0334566788888887
Q ss_pred cceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 222 ASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
..|.+++|+|||+.+++++.++ .++++.+...
T Consensus 331 ~~i~~~~~s~~~~~l~~~~~dg------------~i~i~~~~~~ 362 (425)
T 1r5m_A 331 VPIFAGRISQDGQKYAVAFMDG------------QVNVYDLKKL 362 (425)
T ss_dssp CCEEEEEECTTSSEEEEEETTS------------CEEEEECHHH
T ss_pred ccEEEEEEcCCCCEEEEEECCC------------eEEEEECCCC
Confidence 4688999999999999887665 6777776543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-18 Score=187.21 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=118.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce------------EEEec-CC------------CcEEEEEEccCC--C
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR------------LWTIS-PG------------KSVTSLCWRPDG--K 74 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~------------v~~~~-~~------------~~V~~l~wspDG--~ 74 (763)
+.|.+++|+|++++||+|+.||.|+||++.... +..+. |. ..|++++|+|++ .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 469999999999999999999999999995332 33333 55 779999999998 8
Q ss_pred EEEEEEcCCcEEEEEccCCeEE---------------------------------------EE-ecccCCceeEEEeecC
Q 004298 75 AIAVGLEDGTITLHDVENGKLL---------------------------------------RS-LKSHTVAVVCLNWEED 114 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdve~g~~~---------------------------------------~~-l~~h~~~V~~l~ws~~ 114 (763)
.|++|+.||+|++||+.+++.. .. ..+|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 9999999999999999865442 12 3579999999999999
Q ss_pred CCceeccCCCCCcccCCceeecCCCCCCCCC------CCcccCCcccccCCcccccceecccCCCe-eEEEEEcCCCcEE
Q 004298 115 AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM------PGLVSGDTGFTDDSEDSFRELANSSHQRF-SILCSGDKDGSIC 187 (763)
Q Consensus 115 ~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~L~sgs~DG~I~ 187 (763)
+..++++ .|+.+++||........ +....++.. .+..+ .+++++ ++|++|+.||+|+
T Consensus 189 ~~~l~s~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~--~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 189 YETYLSA-------DDLRINLWHLEITDRSFNIVDIKPANMEELTE-------VITAA--EFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SSEEEEE-------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC-------CEEEE--EECSSCTTEEEEEETTSCEE
T ss_pred CCEEEEe-------CCCeEEEEECCCCCceeeeeecccccccccCc-------ceEEE--EECCCCCcEEEEEeCCCeEE
Confidence 9999987 49999999987311000 001112222 22233 345666 8999999999999
Q ss_pred EEEcCce
Q 004298 188 FNIFGIF 194 (763)
Q Consensus 188 lw~~~~~ 194 (763)
+|+....
T Consensus 253 iwd~~~~ 259 (447)
T 3dw8_B 253 LCDMRAS 259 (447)
T ss_dssp EEETTTC
T ss_pred EEECcCC
Confidence 9987654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=174.97 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=141.3
Q ss_pred CCeEEEEEcCCCCE-EEEEeC---CCeEEEEEccC-ce--EEEecCCCcEEEEEEccC---CCEEEEEEcCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDL-LAMATE---DSKILLHRFNW-QR--LWTISPGKSVTSLCWRPD---GKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~l-LA~~s~---Dg~V~v~~l~~-~~--v~~~~~~~~V~~l~wspD---G~~Lasg~~Dg~V~lwdve 91 (763)
..|.+++|+|++.. +++++. |+.|++|++.. +. .....|...|.+++|+|+ |++|++|+.||.|++||++
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 44999999999965 456665 89999999944 33 333457889999999998 7999999999999999999
Q ss_pred CCe-EEEEecccCCceeEEEe------ecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 92 NGK-LLRSLKSHTVAVVCLNW------EEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 92 ~g~-~~~~l~~h~~~V~~l~w------s~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
+++ .+..+.+|...|.++.| +|++..+++++ .|+.+++||........ .....+.... ...+.
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~------~d~~i~vwd~~~~~~~~-~~~~~~~~~~---~~~v~ 168 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS------RDGTVKVWDPRQKDDPV-ANMEPVQGEN---KRDCW 168 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE------TTSCEEEECTTSCSSCS-EEECCCTTSC---CCCEE
T ss_pred CCCccEEEEEecccceEEEeeccccccCCCccEEEEEe------CCCeEEEEeCCCCCCcc-eeccccCCCC---CCceE
Confidence 988 88899999999999965 67899999998 89999999987632111 1111111100 11122
Q ss_pred cee--cccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecC---CCCEEEEE
Q 004298 165 ELA--NSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK---DLFHLTVL 239 (763)
Q Consensus 165 ~~~--~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp---Dg~~Llv~ 239 (763)
.+. ..++++++++++|+.||.|++|+.......... -....|.+++|+| ++..++++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET------------------NIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE------------------ECSSCEEEEEESCSSSSCCEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec------------------CCCCceEEEEcCCCCCCCCEEEEE
Confidence 222 235678889999999999999997764432211 1124588999999 99999988
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
+.++
T Consensus 231 ~~dg 234 (357)
T 3i2n_A 231 SLEG 234 (357)
T ss_dssp ESTT
T ss_pred CCCC
Confidence 7766
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-17 Score=197.09 Aligned_cols=204 Identities=8% Similarity=0.032 Sum_probs=147.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
++.|.+++|+|++++||+|+.||.|+||+... +.+....+...|.+++|+| |++|++++.|++|++||+++++.++.+
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 34599999999999999999999999999944 4455566778999999999 899999999999999999999999988
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC---CC------CcccCCcccccCCcccccceeccc
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ---MP------GLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~---l~------~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
. |...|++++|+|++.++++|+ .|+++++||....... .+ ....++. ..+..+. +
T Consensus 96 ~-~~~~V~~v~~sp~g~~l~sgs------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-------~~V~sl~--~ 159 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLDWMLIGL------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-------SPIVSIQ--W 159 (902)
T ss_dssp E-CSSCEEEEECCTTCSEEEEEE------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-------CCCCEEE--E
T ss_pred c-CCCCEEEEEECCCCCEEEEEc------CCCcEEEEECCCCccccceeccccccccccccCC-------CCeEEEE--E
Confidence 6 678999999999999999998 8999999998753110 00 0011122 1223333 3
Q ss_pred CC-CeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCC-CceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 171 HQ-RFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQ-GTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 171 ~~-~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~-~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++ +...+++|+.||.| +|+...... ..+..+..+... .+... ...+-....|.+++|+|||+++++++.|+
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP-GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC-CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC-CcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 44 35789999999999 999765432 222211000000 00000 00011224689999999999999988876
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=183.15 Aligned_cols=221 Identities=14% Similarity=0.208 Sum_probs=158.4
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-----------CceEEEec-CCCcEEEEEEccCCC-EEEEEEcCCcEEE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN-----------WQRLWTIS-PGKSVTSLCWRPDGK-AIAVGLEDGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-----------~~~v~~~~-~~~~V~~l~wspDG~-~Lasg~~Dg~V~l 87 (763)
+.|.+++|+|+ ++++|+++.||.|.+|++. .+.+..+. |+..|.+++|+|+++ +|++|+.||.|++
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 208 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICL 208 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEE
Confidence 34999999997 6899999999999999994 34555554 788999999999998 9999999999999
Q ss_pred EEccCCeE-------EEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccC
Q 004298 88 HDVENGKL-------LRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDD 158 (763)
Q Consensus 88 wdve~g~~-------~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~ 158 (763)
|++.++.. ...+.+|...|.+++|+| ++..+++++ .|+.+++||.+.... ........+.
T Consensus 209 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~------~dg~i~i~d~~~~~~~~~~~~~~~~~----- 277 (430)
T 2xyi_A 209 WDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA------DDQKLMIWDTRNNNTSKPSHTVDAHT----- 277 (430)
T ss_dssp EETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE------TTSEEEEEETTCSCSSSCSEEEECCS-----
T ss_pred EeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe------CCCeEEEEECCCCCCCcceeEeecCC-----
Confidence 99987322 456778999999999999 567788887 899999999986321 1111111221
Q ss_pred CcccccceecccCCCee-EEEEEcCCCcEEEEEcCce--eeeeeeecccc-----------cccccCCCCCceeeec---
Q 004298 159 SEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIF--PIGKINIHKFH-----------VAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~--~ig~~~i~~~~-----------~~~~s~~~~~~~~l~~--- 221 (763)
..+..+. +++++. ++++|+.||.|++|++... ++..+..+... .-+.+++.++.+++|+
T Consensus 278 --~~v~~i~--~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 278 --AEVNCLS--FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --SCEEEEE--ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred --CCeEEEE--eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 2233344 345444 7999999999999997752 23333322211 1134566677788775
Q ss_pred -------------------------cceeeEEecCCCC-EEEEEeecCccccccCCCCCCcEEEEEeecccccc
Q 004298 222 -------------------------ASIYKVALSKDLF-HLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIFSK 269 (763)
Q Consensus 222 -------------------------~~I~~v~~SpDg~-~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~ 269 (763)
..|.+++|+|++. .+++++.++ .++++.++...+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg------------~i~iw~~~~~~~~~ 415 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN------------IMQVWQMAENVYND 415 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS------------EEEEEEECHHHHCC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC------------CEEEeEcccccccC
Confidence 2488899999999 444444433 78888888776553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-17 Score=194.61 Aligned_cols=207 Identities=14% Similarity=0.216 Sum_probs=157.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC-eEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG-KLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g-~~~~~ 98 (763)
+.|.+++|+|++++||+++.||.|.+|++ +++.+..+. |...|++++|+|+|++|++|+.||.|++||++++ .....
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 45999999999999999999999999999 677777776 7889999999999999999999999999999987 77788
Q ss_pred ecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|...|.++.|+| ++..+++++ .|+++++||........ .... .....+..+.+.+.++++++
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~v~vwd~~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGC------LDRTVKVWSLGQSTPNF--TLTT------GQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEE------TTSEEEEEETTCSSCSE--EEEC------CCTTCCCEEEECCSTTCCEE
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCccee--EEec------CCCCCEEEEEEEECCCCCEE
Confidence 889999999999999 788888887 89999999986532111 0000 01122334455554588899
Q ss_pred EEEcCCCcEEEEEcCcee-eeeeeecccc----------cccccCCCCCceeeec--------------cceeeEEecCC
Q 004298 178 CSGDKDGSICFNIFGIFP-IGKINIHKFH----------VAIPNADEQGTCRLLN--------------ASIYKVALSKD 232 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~-ig~~~i~~~~----------~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD 232 (763)
++|+.||.|++|+..... ...+..+... ..+.+++.++.+++|+ ..+.+++|+|+
T Consensus 202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 999999999999865432 2222222111 1134566788899997 46889999999
Q ss_pred CCEE-EEEeec
Q 004298 233 LFHL-TVLCSG 242 (763)
Q Consensus 233 g~~L-lv~~~d 242 (763)
|+.+ ++++.+
T Consensus 282 ~~~~~~~~~~~ 292 (814)
T 3mkq_A 282 GRKNYIASGFD 292 (814)
T ss_dssp CGGGEEEEEET
T ss_pred CCceEEEEEeC
Confidence 9864 444433
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-16 Score=174.01 Aligned_cols=214 Identities=19% Similarity=0.260 Sum_probs=155.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC-CeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN-GKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~-g~~~~~ 98 (763)
..|++++|+|+|++||+|+.||.|.||++ +++.+..+. |...+.++.| ++++|++|+.|+.+++||... ...+..
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEE
Confidence 45999999999999999999999999999 666676665 6778888777 568999999999999999875 456778
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+.+|...+.++.|+|++..+++++ .|+.+++|+......... .....+ ...+..+.+++... ++
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~------~D~~v~i~~~~~~~~~~~~~~~~~~~-------~~~V~~~~~~p~~~-~~ 291 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGG------NDNLVNVWPSAPGEGGWVPLQTFTQH-------QGAVKAVAWCPWQS-NV 291 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEESSCCSSCSCCSEEECCC-------SSCEEEEEECTTCT-TE
T ss_pred ecccccceeeeeecCCCCeeeeee------ccccceEEeeccccccceeeeeeccc-------CCceeeeeeCCCcc-cE
Confidence 899999999999999999999998 899999999875321111 111111 12233344443322 34
Q ss_pred EE--EEcCCCcEEEEEcCceee-eeeeecccc---------ccc--ccCCCCCceeeec--------------cceeeEE
Q 004298 177 LC--SGDKDGSICFNIFGIFPI-GKINIHKFH---------VAI--PNADEQGTCRLLN--------------ASIYKVA 228 (763)
Q Consensus 177 L~--sgs~DG~I~lw~~~~~~i-g~~~i~~~~---------~~~--~s~~~~~~~~l~~--------------~~I~~v~ 228 (763)
++ +|+.||+|++|+...... ..+..+... ... .++..++.+++|+ +.|.+++
T Consensus 292 la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~ 371 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 371 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 44 456899999998665322 222211110 011 1344678889887 4699999
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
|||||++|+.++.|+ .|+++.+.
T Consensus 372 ~spdg~~l~S~s~D~------------tvriWdv~ 394 (420)
T 4gga_A 372 MSPDGATVASAAADE------------TLRLWRCF 394 (420)
T ss_dssp ECTTSSCEEEEETTT------------EEEEECCS
T ss_pred EcCCCCEEEEEecCC------------eEEEEECC
Confidence 999999999988776 77787654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=177.21 Aligned_cols=210 Identities=19% Similarity=0.297 Sum_probs=145.8
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEc----cCce-------EEEec-----------CCCcEEEEEEccCCCEEEEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRF----NWQR-------LWTIS-----------PGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l----~~~~-------v~~~~-----------~~~~V~~l~wspDG~~Lasg 79 (763)
.|.+++|+|+++ +||+++.||.|.+|++ .... ...+. |...|++++|+|||++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 499999999999 9999999999999999 5333 33332 24589999999999999999
Q ss_pred EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcc---
Q 004298 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTG--- 154 (763)
Q Consensus 80 ~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~--- 154 (763)
+.||.|++|| .+++.+..+..|...|.++.|+|++..+++++ .|+.+++|+..... ..+.........
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD------VENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE------TTCCEEEEETTTTEEEEEECCC---------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe------cCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 9999999999 67889999999999999999999999999988 89999999986521 000000000000
Q ss_pred c-ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eee----------eeecccccccccCCCCCceeeec-
Q 004298 155 F-TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGK----------INIHKFHVAIPNADEQGTCRLLN- 221 (763)
Q Consensus 155 ~-~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~----------~~i~~~~~~~~s~~~~~~~~l~~- 221 (763)
. .......+..+.+ .++ ..+++++.||.|++|+..... ... +........+.+++.++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEW--VDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp ------CCCBSCCEE--EET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred ccccCCcceeeEEEE--cCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 0 0000000222333 233 468899999999999865421 111 11111111234566788888887
Q ss_pred -------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 -------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|++ .+++++.++
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCC
Confidence 468899999999 777776665
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-17 Score=175.08 Aligned_cols=212 Identities=12% Similarity=0.155 Sum_probs=150.5
Q ss_pred CeEEEEEcCC---CCEEEEEeCCCeEEEEEc-cCc-eEEEec-CCCcEEEEE------EccCCCEEEEEEcCCcEEEEEc
Q 004298 23 QIKIAEWNPE---KDLLAMATEDSKILLHRF-NWQ-RLWTIS-PGKSVTSLC------WRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~sP~---~~lLA~~s~Dg~V~v~~l-~~~-~v~~~~-~~~~V~~l~------wspDG~~Lasg~~Dg~V~lwdv 90 (763)
.|.+++|+|+ ++++++++.||.|++|++ +++ .+..+. |...|.+++ |+|+|++|++|+.||.|++||+
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 4999999999 699999999999999999 444 566665 778899995 4789999999999999999999
Q ss_pred cCCe-EEEEecccCC----ceeEEE----eecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc
Q 004298 91 ENGK-LLRSLKSHTV----AVVCLN----WEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED 161 (763)
Q Consensus 91 e~g~-~~~~l~~h~~----~V~~l~----ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~ 161 (763)
++++ .+..+..|.. .|.++. |+|++..+++++ .|+.+++||....... ....+ ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~---~~~~~-------~~ 210 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY------DNGDIKLFDLRNMALR---WETNI-------KN 210 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE------TTSEEEEEETTTTEEE---EEEEC-------SS
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc------cCCeEEEEECccCcee---eecCC-------CC
Confidence 9887 6777766554 899998 788999999998 8999999998763210 00111 11
Q ss_pred cccceecccCC---CeeEEEEEcCCCcEEEEEcCcee-eeeee-----eccc----------cc-ccccCCCCCceeeec
Q 004298 162 SFRELANSSHQ---RFSILCSGDKDGSICFNIFGIFP-IGKIN-----IHKF----------HV-AIPNADEQGTCRLLN 221 (763)
Q Consensus 162 ~~~~~~~~~~~---~~~~L~sgs~DG~I~lw~~~~~~-ig~~~-----i~~~----------~~-~~~s~~~~~~~~l~~ 221 (763)
.+..+. +++ +++.+++|+.||.|++|+..... ...+. .+.. .. .+.+++.++.+++|+
T Consensus 211 ~v~~~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 211 GVCSLE--FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp CEEEEE--ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred ceEEEE--cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 222233 334 67788899999999999754321 11110 1111 01 234566777788776
Q ss_pred c---------------------------------ceeeEEecCCCCEEEE-EeecCccccccCCCCCCcEEEEEeec
Q 004298 222 A---------------------------------SIYKVALSKDLFHLTV-LCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 222 ~---------------------------------~I~~v~~SpDg~~Llv-~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
. +|.+++|+|||+.+++ ++.|+ .++++.+..
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~------------~i~iw~~~~ 353 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ------------TVRVLIVTK 353 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS------------EEEEEEECC
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC------------cEEEEECCC
Confidence 2 4788999999999985 54444 677776653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=171.95 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=120.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEE---ecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE--
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWT---ISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL-- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~---~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~-- 95 (763)
..|.+++|+|+++++++++.||.|++|++.... ... ..+...|.+++|+|+|++|++|+.||.|++||+++++.
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 459999999999999999999999999994433 222 23778999999999999999999999999999998762
Q ss_pred -EEE-ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC---C-----cccCCc-ccccCCccccc
Q 004298 96 -LRS-LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP---G-----LVSGDT-GFTDDSEDSFR 164 (763)
Q Consensus 96 -~~~-l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~---~-----~~s~~~-~~~~~~~~~~~ 164 (763)
... ...|...|.++.|+|++..+++++ .|+.+++||......... . ...+.. .........+.
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 206 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGS------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 206 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEE------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEc------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEE
Confidence 333 367889999999999999999998 899999999753210000 0 000000 00001112222
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+ .+++++++|++|+.||.|++|+...
T Consensus 207 ~~--~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 207 GV--CFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EE--EECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EE--EECCCCCEEEEEeCCCEEEEEECCC
Confidence 33 3456778999999999999998653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-17 Score=178.99 Aligned_cols=206 Identities=10% Similarity=0.006 Sum_probs=146.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc----cCceE--------EEec-----CCCcEEEEE--EccCCCEEEEEEcC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF----NWQRL--------WTIS-----PGKSVTSLC--WRPDGKAIAVGLED 82 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l----~~~~v--------~~~~-----~~~~V~~l~--wspDG~~Lasg~~D 82 (763)
+.|.+++|+|++++|++++.||.|++|++ .++.+ ..+. +...+.++. |+|++++|++|+.|
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 34999999999999999999999999998 33322 2222 455677777 67899999999999
Q ss_pred CcEEEEEccCCeEEEEecc--cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCcccccCC
Q 004298 83 GTITLHDVENGKLLRSLKS--HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDTGFTDDS 159 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~--h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~~~~~~~ 159 (763)
|.|++||+++++.+..+.. |...|++++|+|++..+++++ .|+.+++||.+.... ..... ++
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~~~~~--~~~~~~~~------- 256 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT------TRGIIDIWDIRFNVL--IRSWSFGD------- 256 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE------TTSCEEEEETTTTEE--EEEEBCTT-------
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc------CCCeEEEEEcCCccE--EEEEecCC-------
Confidence 9999999999999999988 889999999999999999998 899999999875211 00000 11
Q ss_pred cccccceec--ccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCC------ceee--eccceeeEE
Q 004298 160 EDSFRELAN--SSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQG------TCRL--LNASIYKVA 228 (763)
Q Consensus 160 ~~~~~~~~~--~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~------~~~l--~~~~I~~v~ 228 (763)
...+..+.+ .+++++.+|++|+.||+|++|+..... ...+..+...........++ .++- ....|.+++
T Consensus 257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 112233322 345778899999999999999976432 33333222111110000100 1111 346789999
Q ss_pred ecCCCCEEEEEeecC
Q 004298 229 LSKDLFHLTVLCSGQ 243 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~ 243 (763)
|+ +++.+++++.|+
T Consensus 337 ~~-~~~~l~s~~~d~ 350 (437)
T 3gre_A 337 VS-NDKILLTDEATS 350 (437)
T ss_dssp EE-TTEEEEEEGGGT
T ss_pred EC-CceEEEecCCCC
Confidence 99 778888777666
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-17 Score=173.22 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=121.1
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC----
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN---- 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~---- 92 (763)
..|.+++|+|+++ ++++++.||.|++|++ .......+. |...|.+++|+| +++|++|+.||.|++||+++
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 3499999999999 9999999999999999 777666654 778999999999 99999999999999999987
Q ss_pred -----CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC-CCCCCCCcccCCcccccCCcccccce
Q 004298 93 -----GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP-RIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 93 -----g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~-~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
++.+..+. |...|.++.|++++ +++++ .++.+++||... ...........+. ..+..
T Consensus 136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~-------~~i~~- 198 (342)
T 1yfq_A 136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGM------NNSQVQWFRLPLCEDDNGTIEESGLK-------YQIRD- 198 (342)
T ss_dssp CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEE------STTEEEEEESSCCTTCCCEEEECSCS-------SCEEE-
T ss_pred cccccCCeeeEEe-eCCceEEEEecCCc--EEEEe------CCCeEEEEECCccccccceeeecCCC-------CceeE-
Confidence 77777776 88999999999987 66666 799999999876 2211111111111 11222
Q ss_pred ecccCC-CeeEEEEEcCCCcEEEEEcCc
Q 004298 167 ANSSHQ-RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 167 ~~~~~~-~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..+++ +++++++|+.||.|++|+++.
T Consensus 199 -i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 199 -VALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp -EEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred -EEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 33456 778999999999999998754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-17 Score=178.38 Aligned_cols=197 Identities=19% Similarity=0.252 Sum_probs=145.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..++||++ ++||+|. |++|+||+. +|+.+..+. |+..|++++|+|||++||+|+.||+|+|||+++++.++.+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 456999975 6888776 899999999 666554443 6678999999999999999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.|+ +..+++++ .|+.+++|+........ ....++...+ ....+.+.++.+++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs------~d~~i~~~d~~~~~~~~-~~~~~h~~~~---------~~~~~~~~g~~l~s 247 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGS------RSGHIHHHDVRVAEHHV-ATLSGHSQEV---------CGLRWAPDGRHLAS 247 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEE------TTSEEEEEETTSSSCEE-EEEECCSSCE---------EEEEECTTSSEEEE
T ss_pred eCCCCceEEEeeC--CCEEEEEe------CCCceeEeeecccceee-EEecccccce---------eeeeecCCCCeeee
Confidence 9999999999886 56888888 89999999977532211 1112222221 12234577789999
Q ss_pred EcCCCcEEEEEcCcee-----eeeeeecccc----------cc---cccCCCCCceeeec-------------cceeeEE
Q 004298 180 GDKDGSICFNIFGIFP-----IGKINIHKFH----------VA---IPNADEQGTCRLLN-------------ASIYKVA 228 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~-----ig~~~i~~~~----------~~---~~s~~~~~~~~l~~-------------~~I~~v~ 228 (763)
++.||.+++|+..... ......+... .. ..+++.|+.+++|+ ..+.++.
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~ 327 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeee
Confidence 9999999999865321 1111111110 00 12456789999997 4578899
Q ss_pred ecCCCCEEEEEe
Q 004298 229 LSKDLFHLTVLC 240 (763)
Q Consensus 229 ~SpDg~~Llv~~ 240 (763)
|+|+++.+++++
T Consensus 328 ~~~~~~~lv~~s 339 (420)
T 4gga_A 328 WSPHYKELISGH 339 (420)
T ss_dssp EETTTTEEEEEE
T ss_pred ecCCCCeEEEEE
Confidence 999999998876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=190.59 Aligned_cols=188 Identities=9% Similarity=0.034 Sum_probs=138.6
Q ss_pred CCeEEEEEcCC------CCEEEEEeCCCeEEEEEccCce------------EEEec-CCCcEEEEEEccCCCEEEEEEcC
Q 004298 22 SQIKIAEWNPE------KDLLAMATEDSKILLHRFNWQR------------LWTIS-PGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 22 ~~V~~l~~sP~------~~lLA~~s~Dg~V~v~~l~~~~------------v~~~~-~~~~V~~l~wspDG~~Lasg~~D 82 (763)
+.|..++|+|+ +.+||+++.||+|++|++.... ...+. |...|++++|+|++ .|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence 45999999997 5799999999999999994321 12332 66789999999875 89999999
Q ss_pred CcEEEEEccCCe-EEEEecccCCceeEE--EeecCC-CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 83 GTITLHDVENGK-LLRSLKSHTVAVVCL--NWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 83 g~V~lwdve~g~-~~~~l~~h~~~V~~l--~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
|+|++||+++++ ....+.+|...|+++ .|++++ .++++++ .|+++++||.+..... ....++...
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S------~D~tvklWD~~~~~~~--~~~~~~~~~--- 355 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA------VDGYFYIFNPKDIATT--KTTVSRFRG--- 355 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE------TTSEEEEECGGGHHHH--CEEEEECSC---
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec------cCCeEEEEECCCCCcc--ccccccccc---
Confidence 999999999774 455688999999999 578887 8899998 8999999998752110 001111100
Q ss_pred CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 159 SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
..+..+ .+++++..+++++.|++|++|+...... ..+ .-+.+.|.+++|||||+.|+
T Consensus 356 --~~v~~v--~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l------------------~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 356 --SNLVPV--VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL------------------VSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp --CSCCCE--EEETTTTEEEEECSSSEEEEEETTCTTCCEEE------------------EECSSCEEEEECCSSCCBCE
T ss_pred --Ccccce--EeCCCcCeEEEeCCCCcEEEEECcccccceee------------------ecCCCceEEEEeCCCCCeEE
Confidence 001122 3456677899999999999998654321 222 12235689999999999999
Q ss_pred EEeecC
Q 004298 238 VLCSGQ 243 (763)
Q Consensus 238 v~~~d~ 243 (763)
.++.|+
T Consensus 414 Sgs~Dg 419 (524)
T 2j04_B 414 AGSADG 419 (524)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 888877
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-17 Score=173.11 Aligned_cols=156 Identities=9% Similarity=0.055 Sum_probs=121.6
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEc-cCceEEEe--cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRF-NWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.+++|+| +++++++++.||+|++|++ +++.+... .+...|++++|+|||++||+|+.||.|++||+++++.+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~ 205 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA 205 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence 4599999999 9999999999999999999 45544433 24557999999999999999999999999999999887
Q ss_pred -EEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCC
Q 004298 97 -RSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 97 -~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
..+.. |...|++++|+|++.++++++ ++.+++||.+..... +.. ...+.. .+.....++++
T Consensus 206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~-------~~~v~iwd~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~ 270 (343)
T 3lrv_A 206 SSRFPVDEEAKIKEVKFADNGYWMVVEC-------DQTVVCFDLRKDVGTLAYPT-YTIPEF-------KTGTVTYDIDD 270 (343)
T ss_dssp CEECCCCTTSCEEEEEECTTSSEEEEEE-------SSBEEEEETTSSTTCBSSCC-CBC------------CCEEEEECT
T ss_pred ccEEeccCCCCEEEEEEeCCCCEEEEEe-------CCeEEEEEcCCCCcceeecc-cccccc-------cccceEEEECC
Confidence 88888 999999999999999999997 449999998863211 110 000101 11112245667
Q ss_pred CeeEEEEEcC-CCcEEEEEcC
Q 004298 173 RFSILCSGDK-DGSICFNIFG 192 (763)
Q Consensus 173 ~~~~L~sgs~-DG~I~lw~~~ 192 (763)
++++|++|+. |+.|++|.+.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEEEc
Confidence 8889999988 9999999864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=188.76 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=117.3
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--------------------------------cCceEEEecCCCc
Q 004298 16 FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF--------------------------------NWQRLWTISPGKS 63 (763)
Q Consensus 16 ~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l--------------------------------~~~~v~~~~~~~~ 63 (763)
..|.+..+|.+++|+|||.++|+++.|++|+ +. .+..+..+.+...
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY 87 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence 3566778899999999999999999999994 32 1112222224567
Q ss_pred EEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-----ceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-----AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 64 V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-----~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
|.+++|||||+.||+++.||.|++||.++ ++..+. |.. .|.+++|+|+|+++++|+ .||++++|+.
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs------~DGtVkIWd~ 158 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN------EDGELQFFSI 158 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE------TTSEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc------CCCEEEEEEC
Confidence 99999999999999999999999999643 777777 665 499999999999999998 8999999998
Q ss_pred CCCCC---------CCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 139 APRIP---------QMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 139 ~~~~~---------~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..... .+..+..+|...+ ...++++++ +++++.|++|++|+...
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V---------~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWV---------THIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCE---------EEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred CCCccccccceeeeeeecccccccccE---------EEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 76421 0111113333332 233455777 78888899999998654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-17 Score=181.13 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=146.4
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCeEEEEEcc---CceEEEe---cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLL-AMATEDSKILLHRFN---WQRLWTI---SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lL-A~~s~Dg~V~v~~l~---~~~v~~~---~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+.|.+++|+|++++| |+++.||.|++|++. ++.+..+ .+...|++++|+|||++|++|+.||.|++|++.+++
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP 182 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence 469999999999996 889999999999986 4455444 467889999999999999999999999999998877
Q ss_pred EEE----EecccCCceeEEEeecC---CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccccee
Q 004298 95 LLR----SLKSHTVAVVCLNWEED---AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 95 ~~~----~l~~h~~~V~~l~ws~~---~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
... .+.+|...|+++.|+|+ ++++++++ .|+++++||....... .....++.. .+..+.
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~------~d~~i~vwd~~~~~~~-~~~~~~h~~-------~v~~~~ 248 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD------RDEHIKISHYPQCFIV-DKWLFGHKH-------FVSSIC 248 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE------TTSCEEEEEESCTTCE-EEECCCCSS-------CEEEEE
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEc------CCCcEEEEECCCCcee-eeeecCCCC-------ceEEEE
Confidence 544 77789999999999999 88999998 8999999998653110 000112222 222333
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCC-------CCceeeeccceeeEEecCCCCEEEEE
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADE-------QGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~-------~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
++ ++++|++|+.||+|++|++.... +..+..+........... ...-......|..++|+||+++++++
T Consensus 249 --~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 249 --CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp --EC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred --EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 44 77899999999999999976543 333432211000000000 00000123468899999999999998
Q ss_pred e-ecC
Q 004298 240 C-SGQ 243 (763)
Q Consensus 240 ~-~d~ 243 (763)
+ .++
T Consensus 326 ~~~d~ 330 (450)
T 2vdu_B 326 VEATK 330 (450)
T ss_dssp ETTCS
T ss_pred ECCCC
Confidence 8 444
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=177.26 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=150.7
Q ss_pred CCeEEEEEc----CCCCE-EEEEeCCCeEEEEEccC-------ceEE-----Ee--------cCCCcEEEEEEccCCCEE
Q 004298 22 SQIKIAEWN----PEKDL-LAMATEDSKILLHRFNW-------QRLW-----TI--------SPGKSVTSLCWRPDGKAI 76 (763)
Q Consensus 22 ~~V~~l~~s----P~~~l-LA~~s~Dg~V~v~~l~~-------~~v~-----~~--------~~~~~V~~l~wspDG~~L 76 (763)
..|.+++|+ |++++ +++++.||.|++|++.. +.+. .+ .+...|.+++|+|+| +|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence 459999999 99999 99999999999999943 4433 33 267789999999999 99
Q ss_pred EEEEcCCcEEEEEccCCeEEEEecc---c---CCceeEEEeecCCCceeccCCCCCcccC---CceeecCCCCCCCCCCC
Q 004298 77 AVGLEDGTITLHDVENGKLLRSLKS---H---TVAVVCLNWEEDAQPSKNDFGNIPTYED---RTSRFFPPAPRIPQMPG 147 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l~~---h---~~~V~~l~ws~~~~~l~s~s~~~~~~~d---~~i~~wd~~~~~~~l~~ 147 (763)
++|+.||.|++||+++++.+..+.. | ...|.++.|+|++.++++++ .| +.+++||...... ..
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~------~d~~~g~i~i~d~~~~~~--~~ 272 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH------DSNSFGCITLYETEFGER--IG 272 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE------EETTEEEEEEEETTTCCE--EE
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe------cCCCCceEEEEECCCCcc--cc
Confidence 9999999999999999999999998 9 99999999999999999987 78 9999999875311 11
Q ss_pred cccCC----ccccc--CCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc-cc--cccCCCCCce
Q 004298 148 LVSGD----TGFTD--DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH-VA--IPNADEQGTC 217 (763)
Q Consensus 148 ~~s~~----~~~~~--~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~-~~--~~s~~~~~~~ 217 (763)
...+. ..... .....+..+ .+++++++|++|+.||.|++|+.... .+..+...... .+ ....+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 350 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 350 (397)
T ss_dssp EECBC--------CCBSBSSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred eeccCcccccccccccccCCcEEEE--EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccc
Confidence 11110 00000 011122223 34567789999999999999997654 33333311000 00 0000000111
Q ss_pred eeeccceeeEEecCCC----------CEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 218 RLLNASIYKVALSKDL----------FHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 218 ~l~~~~I~~v~~SpDg----------~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
+....+|.+++|+||| +.+++++.|+ .++++.++.
T Consensus 351 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg------------~i~iw~~~~ 395 (397)
T 1sq9_A 351 SLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR------------SIRWFREAG 395 (397)
T ss_dssp BCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT------------EEEEEEEEC
T ss_pred cccCCceeEEEeccccccccccccccceEEEecCCC------------cEEEEEcCC
Confidence 2224679999999999 6777776665 778887764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=174.47 Aligned_cols=212 Identities=8% Similarity=0.059 Sum_probs=147.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c------eEEEec-CCCcEEEEEEccC----C---CEEEEEEcCCcE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q------RLWTIS-PGKSVTSLCWRPD----G---KAIAVGLEDGTI 85 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~------~v~~~~-~~~~V~~l~wspD----G---~~Lasg~~Dg~V 85 (763)
.+.|.+++|+| ++||+++.||.|++|++.. + .+..+. |...|++++|+|+ | ++|++|+.||.|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 34599999999 8999999999999999944 3 355554 7889999999999 9 999999999999
Q ss_pred EEEEccCCeE-----EEEeccc-----CCceeEEEee----cCCCc-eeccCCCCCcccCCceeecCCCC------CCCC
Q 004298 86 TLHDVENGKL-----LRSLKSH-----TVAVVCLNWE----EDAQP-SKNDFGNIPTYEDRTSRFFPPAP------RIPQ 144 (763)
Q Consensus 86 ~lwdve~g~~-----~~~l~~h-----~~~V~~l~ws----~~~~~-l~s~s~~~~~~~d~~i~~wd~~~------~~~~ 144 (763)
++||+++++. +..+..| ...|.++.|+ |++.. +++++ .|+.+++||... ....
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD------VKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE------TTSCEEEEEEESSSSHHHHTTT
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe------CCCcEEEEeCCcccccccccee
Confidence 9999998887 8888888 5899999999 99999 99987 899999999875 2111
Q ss_pred C-CC--cccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeee---c---ccc---------
Q 004298 145 M-PG--LVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINI---H---KFH--------- 205 (763)
Q Consensus 145 l-~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i---~---~~~--------- 205 (763)
. .. ...+...........+..+ .+++++ ++++|+.||.|++|+.... .+..+.. + ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSV--DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEE--EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eccCcceeeeeeccccCCCCCceEE--EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 0 00 0000000000011222233 344666 9999999999999987642 2333332 2 111
Q ss_pred -cccccCCCC---Cceeeec---------------------------cceeeEEecCCCCEEEEEeecC
Q 004298 206 -VAIPNADEQ---GTCRLLN---------------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 206 -~~~~s~~~~---~~~~l~~---------------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+.+++.+ +.+++|+ ..|.+++|+||+++|++++.++
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 112244455 6777765 2477899999999998887765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-17 Score=177.83 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=148.1
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcc-Cc------eEEEe----cCCCcEEEEEEccC-CCEEEEEEcCCcEEEE
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFN-WQ------RLWTI----SPGKSVTSLCWRPD-GKAIAVGLEDGTITLH 88 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~-~~------~v~~~----~~~~~V~~l~wspD-G~~Lasg~~Dg~V~lw 88 (763)
..|.+++|+|+ ++++++++.|+.|++|++. ++ ....+ .|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 45999999998 8999999999999999994 43 33333 36778999999999 7899999999999999
Q ss_pred EccCCeEEEEeccc------CCceeEEEeecCC-CceeccCCCCCcccCC---ceeecCCCCCCCCCCCccc-CCccccc
Q 004298 89 DVENGKLLRSLKSH------TVAVVCLNWEEDA-QPSKNDFGNIPTYEDR---TSRFFPPAPRIPQMPGLVS-GDTGFTD 157 (763)
Q Consensus 89 dve~g~~~~~l~~h------~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~---~i~~wd~~~~~~~l~~~~s-~~~~~~~ 157 (763)
|+++++.+..+..| ...|.++.|+|++ ..+++++ .|+ .+++||......... ... ++..
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~--- 263 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT------GSDNDPSILIWDLRNANTPLQ-TLNQGHQK--- 263 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE------CCSSSCCCCEEETTSTTSCSB-CCCSCCSS---
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE------CCCCCceEEEEeCCCCCCCcE-EeecCccC---
Confidence 99999999998876 7899999999997 5778877 677 999999876321111 111 2222
Q ss_pred CCcccccceecccCC-CeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCC-C
Q 004298 158 DSEDSFRELANSSHQ-RFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL-F 234 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg-~ 234 (763)
.+..+. +++ ++++|++|+.||+|++|+.... .+..+. .....|.+++|+||+ .
T Consensus 264 ----~v~~~~--~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~------------------~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 264 ----GILSLD--WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP------------------ARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp ----CEEEEE--ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE------------------CSSSCCCCEEECTTCTT
T ss_pred ----ceeEEE--eCCCCCCeEEEEeCCCCEEEeeCCCCccceeec------------------CCCCceEEEEECCCCCC
Confidence 222233 445 6789999999999999986643 222221 122458899999999 6
Q ss_pred EEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 235 HLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 235 ~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.+++++.|+ .++++.++..
T Consensus 320 ~l~s~~~d~------------~i~iw~~~~~ 338 (416)
T 2pm9_A 320 LFACASFDN------------KIEVQTLQNL 338 (416)
T ss_dssp EEEECCSSS------------EEEEEESCCC
T ss_pred EEEEEecCC------------cEEEEEccCC
Confidence 666655544 7888877654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=188.75 Aligned_cols=153 Identities=9% Similarity=0.030 Sum_probs=120.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cc-eEEEe-cCCCcEEEE--EEccCC-CEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQ-RLWTI-SPGKSVTSL--CWRPDG-KAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~-~v~~~-~~~~~V~~l--~wspDG-~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|.+++|+|+ ..||+|+.||+|++|++. ++ ....+ .|...|+++ +|+|+| ++||+|+.||+|+|||+++++.
T Consensus 267 ~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 267 SLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp TCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred CCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 45999999986 489999999999999994 43 33333 378899999 678898 8999999999999999999887
Q ss_pred EEEecccCC--ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 96 LRSLKSHTV--AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 96 ~~~l~~h~~--~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
+..+.+|.. .|.+++|+|+++.+++++ .|+++++||.+... ......+|...+ ...+++++
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~------~d~tv~lwd~~~~~--~~~~l~gH~~~V---------~sva~Sp~ 408 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSD------GASSLRAVPSRAAF--AVHPLVSRETTI---------TAIGVSRL 408 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEEC------SSSEEEEEETTCTT--CCEEEEECSSCE---------EEEECCSS
T ss_pred ccccccccccCcccceEeCCCcCeEEEeC------CCCcEEEEECcccc--cceeeecCCCce---------EEEEeCCC
Confidence 777767653 589999999999898887 79999999987632 111222343322 23345678
Q ss_pred eeEEEEEcCCCcEEEEEcC
Q 004298 174 FSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~ 192 (763)
+..|++|+.||+|++|+..
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CCBCEEEETTTEEECCBSC
T ss_pred CCeEEEEECCCEEEEEech
Confidence 8899999999999999743
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=167.32 Aligned_cols=199 Identities=13% Similarity=0.106 Sum_probs=143.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC---eEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG---KLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g---~~~ 96 (763)
+.|.+++| |+++++|+++.||.|++|++.... ...+. |...|.+++|+|+|++|++|+.||.|++|++.+. +.+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 45999999 999999999999999999995444 43333 7789999999999999999999999999998753 667
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
..+..|...|.++.| ++..+++++ .|+.+++||.......+ ..+.. .+..+.+. ..+.+.
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~------~d~~i~~~d~~~~~~~~----~~~~~-------~v~~~~~~-~~~~~~ 157 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGS------WDKTAKVWKEGSLVYNL----QAHNA-------SVWDAKVV-SFSENK 157 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEE------TTSEEEEEETTEEEEEE----ECCSS-------CEEEEEEE-ETTTTE
T ss_pred cchhhcccCEEEEEe--cCCEEEEEe------CCCCEEEEcCCcEEEec----ccCCC-------ceeEEEEc-cCCCCE
Confidence 888899999999999 467888887 89999999932211111 11111 11122222 125678
Q ss_pred EEEEcCCCcEEEEEcCceeeeeeee-ccc---------ccccccCCCCCceeeec--------------cceeeEEecCC
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKINI-HKF---------HVAIPNADEQGTCRLLN--------------ASIYKVALSKD 232 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~i-~~~---------~~~~~s~~~~~~~~l~~--------------~~I~~v~~SpD 232 (763)
+++++.||.|++|+.+.. ...+.. +.. .....+++.++.+++|+ ..|.+++|+|+
T Consensus 158 l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 158 FLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 999999999999984432 111111 110 01144666788888887 46899999999
Q ss_pred CCEEEEEeecC
Q 004298 233 LFHLTVLCSGQ 243 (763)
Q Consensus 233 g~~Llv~~~d~ 243 (763)
| .+++++.++
T Consensus 237 ~-~l~~~~~dg 246 (313)
T 3odt_A 237 G-DIVSCGEDR 246 (313)
T ss_dssp S-CEEEEETTS
T ss_pred C-CEEEEecCC
Confidence 9 577776665
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=171.44 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=144.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-CceEEEe--------------cCCCcEEEEEEcc-CCCEEEEEEcCC
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFN-WQRLWTI--------------SPGKSVTSLCWRP-DGKAIAVGLEDG 83 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~~~v~~~--------------~~~~~V~~l~wsp-DG~~Lasg~~Dg 83 (763)
.+.|.+++|+| ++++||+++.||.|++|++. ++....+ .|...|.+++|+| ++++|++|+.||
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 34599999999 99999999999999999993 3332222 1778999999999 888999999999
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCC---ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCc
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ---PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSE 160 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~---~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~ 160 (763)
.|++||+++++....+. +...+.++.|++.+. .+++++ .++.+++||..... ......++..
T Consensus 123 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~d~~~~~--~~~~~~~~~~------ 187 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT------RGPKVQLCDLKSGS--CSHILQGHRQ------ 187 (408)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE------SSSSEEEEESSSSC--CCEEECCCCS------
T ss_pred eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc------CCCeEEEEeCCCcc--eeeeecCCCC------
Confidence 99999999999988886 678999999998554 788887 89999999987531 1111222222
Q ss_pred ccccceecccCCCee-EEEEEcCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 161 DSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
.+..+. ++++++ ++++|+.||.|++|+..... ...+..+... ...............|.+++|+|||++++
T Consensus 188 -~v~~~~--~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 188 -EILAVS--WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---KSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp -CEEEEE--ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---SCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred -cEEEEE--ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---cceeeccccccccCceeEEEEcCCCCEEE
Confidence 222333 445555 79999999999999976432 1111110000 00000111122346789999999999999
Q ss_pred EEeecC
Q 004298 238 VLCSGQ 243 (763)
Q Consensus 238 v~~~d~ 243 (763)
+++.++
T Consensus 262 ~~~~dg 267 (408)
T 4a11_B 262 TVGTDN 267 (408)
T ss_dssp EEETTS
T ss_pred EecCCC
Confidence 988776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=177.48 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=138.9
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEEc-cCceEEEe--c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEK-DLLAMATEDSKILLHRF-NWQRLWTI--S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l-~~~~v~~~--~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..|.+++|+|++ +++++++.|+.|++|++ +++.+..+ . |...|.+++|+|||++|++|+.||.|++||+++++.+
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 349999999998 79999999999999999 66677777 3 7789999999999999999999999999999999999
Q ss_pred EEe-cccCCc-eeEEEeecCCCceecc---CCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 97 RSL-KSHTVA-VVCLNWEEDAQPSKND---FGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 97 ~~l-~~h~~~-V~~l~ws~~~~~l~s~---s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+ ..|.+. +.++.|+|++.+++++ + .|+.+++||..............+. ..+. ...++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~--~~~~s 276 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------SERQVALWDTKHLEEPLSLQELDTS-------SGVL--LPFFD 276 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTT------CCEEEEEEETTBCSSCSEEEECCCC-------SSCE--EEEEE
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCC------CCceEEEEcCccccCCceEEeccCC-------Ccee--EEEEc
Confidence 998 788775 9999999999999988 5 7999999998763221111000111 1122 22344
Q ss_pred CCeeEE-EEEcCCCcEEEEEcCcee--eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEE
Q 004298 172 QRFSIL-CSGDKDGSICFNIFGIFP--IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLT 237 (763)
Q Consensus 172 ~~~~~L-~sgs~DG~I~lw~~~~~~--ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Ll 237 (763)
++++.| ++|+.||.|++|++.... ...+..+. ...+|.+++|+||+..++
T Consensus 277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~----------------~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS----------------SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC----------------CSSCCSEEEECCGGGSCG
T ss_pred CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc----------------cCCcccceEEecccccce
Confidence 566666 467789999999866432 22221110 124578999999988764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=172.54 Aligned_cols=197 Identities=16% Similarity=0.201 Sum_probs=145.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
+.+++|++ +.+++++.|+.|++|++ +++....+. |...|++++|+|||++|++|+.||.|++||+++++.++.+.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence 45578886 45777889999999999 555444443 67899999999999999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
+|...|.++.|+ +..+++++ .|+.+++||....... .....++.. .+..+ .+++++++|++|
T Consensus 174 ~~~~~v~~~~~~--~~~l~~~~------~dg~i~i~d~~~~~~~-~~~~~~~~~-------~v~~~--~~~~~~~~l~s~ 235 (401)
T 4aez_A 174 GHQARVGCLSWN--RHVLSSGS------RSGAIHHHDVRIANHQ-IGTLQGHSS-------EVCGL--AWRSDGLQLASG 235 (401)
T ss_dssp CCSSCEEEEEEE--TTEEEEEE------TTSEEEEEETTSSSCE-EEEEECCSS-------CEEEE--EECTTSSEEEEE
T ss_pred CCCCceEEEEEC--CCEEEEEc------CCCCEEEEecccCcce-eeEEcCCCC-------CeeEE--EEcCCCCEEEEE
Confidence 999999999994 56888887 8999999998742111 111112222 22223 345677899999
Q ss_pred cCCCcEEEEEcCce-eeeeeeecccc-----c-----c-ccc--CCCCCceeeec-------------cceeeEEecCCC
Q 004298 181 DKDGSICFNIFGIF-PIGKINIHKFH-----V-----A-IPN--ADEQGTCRLLN-------------ASIYKVALSKDL 233 (763)
Q Consensus 181 s~DG~I~lw~~~~~-~ig~~~i~~~~-----~-----~-~~s--~~~~~~~~l~~-------------~~I~~v~~SpDg 233 (763)
+.||.|++|+.... ....+..+... . . ..+ ++.++.+++|+ ..|.+++|+|+|
T Consensus 236 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~ 315 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS 315 (401)
T ss_dssp ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSS
T ss_pred eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Confidence 99999999987653 22222211111 1 1 123 23688999998 468999999999
Q ss_pred CEEEEEe
Q 004298 234 FHLTVLC 240 (763)
Q Consensus 234 ~~Llv~~ 240 (763)
+.+++++
T Consensus 316 ~~l~~~~ 322 (401)
T 4aez_A 316 KEIMSTH 322 (401)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=175.41 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=125.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc--CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFN--WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~--~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
...|.+++|+| +++++++|+.|++|++|++. ++.+..+. |...|++++|+|||++|++|+.||+|++||+++++.+
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 45699999987 88999999999999999983 44555554 7789999999999999999999999999999999999
Q ss_pred EEecccC-------CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCcccCCcccccCCccccccee
Q 004298 97 RSLKSHT-------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGLVSGDTGFTDDSEDSFRELA 167 (763)
Q Consensus 97 ~~l~~h~-------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~~s~~~~~~~~~~~~~~~~~ 167 (763)
..+..+. ..|++++|+|+++++++|+ .|+.+++||..... ..+.....+|...+ . .
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-------~--~ 349 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGY------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRI-------S--C 349 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC------TTSCEEEEETTTCCEEEEECCSCSSCCCCC-------C--E
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEE------CCCCEEEEECCCCceEEEEecccCCCCCce-------E--E
Confidence 8876543 2489999999999999998 89999999976421 11111112333322 2 2
Q ss_pred cccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 168 NSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 168 ~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..+++++.+|++|+.||+|++|++..
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCC
Confidence 34567888999999999999998543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=167.75 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=120.5
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|+ +++||+|+.|++|++|++... .+..+. |...|.+++|+|+ |++|++|+.||+|++||++++
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence 45999999864 899999999999999999432 444444 7789999999997 899999999999999999876
Q ss_pred e--EEEEecccCCceeEEEeecC-------------CCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccc
Q 004298 94 K--LLRSLKSHTVAVVCLNWEED-------------AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFT 156 (763)
Q Consensus 94 ~--~~~~l~~h~~~V~~l~ws~~-------------~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~ 156 (763)
. ....+.+|...|.+++|+|+ ++.+++++ .|+++++||....... +.....+|...
T Consensus 134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs------~D~~v~lwd~~~~~~~~~~~~~l~~H~~~- 206 (297)
T 2pm7_B 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDW- 206 (297)
T ss_dssp SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE------TTSCEEEEEEETTTTEEEEEEEECCCSSC-
T ss_pred CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc------CCCcEEEEEEcCCCceEEEEEEecCCCCc-
Confidence 3 24567789999999999997 46888888 8999999997642211 11112233332
Q ss_pred cCCcccccceecccCC-CeeEEEEEcCCCcEEEEEcCc
Q 004298 157 DDSEDSFRELANSSHQ-RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~~~~L~sgs~DG~I~lw~~~~ 193 (763)
+..+.+.+.. .+++|++|+.||+|++|+...
T Consensus 207 ------V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 207 ------VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ------EEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ------eEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 2334443321 248999999999999998654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=182.24 Aligned_cols=187 Identities=12% Similarity=0.139 Sum_probs=144.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cC----ceEEEec-CCCc-EEEEEEcc--CCCEEEEEEcCCcEEEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NW----QRLWTIS-PGKS-VTSLCWRP--DGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~----~~v~~~~-~~~~-V~~l~wsp--DG~~Lasg~~Dg~V~lwd 89 (763)
...+.|.+++|+|+++++|+++ ++.|.+|++ ++ +.+..+. |... |++++|+| ||++|++|+.||.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 3456799999999999999998 889999999 45 5666665 7788 99999999 999999999999999999
Q ss_pred ccCC--------eEEEEecccCCceeEEEeecCCCceeccCCCCCcccC----CceeecCCCCCCCCCCCcccCCccccc
Q 004298 90 VENG--------KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYED----RTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 90 ve~g--------~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d----~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
+.++ +.+..+..|...|.+++|+|+++.+++++ .+ +.+.+|+.......+. ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~~~~~~~~v~~~d~~~~~~~~~----~~~~--- 161 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG------EGRDNFGVFISWDSGNSLGEVS----GHSQ--- 161 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE------CCSSCSEEEEETTTCCEEEECC----SCSS---
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec------cCCCCccEEEEEECCCcceeee----cCCc---
Confidence 9855 77788889999999999999999998887 44 6899999543222222 2222
Q ss_pred CCcccccceecccCCCee-EEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeecc---ceeeEEecCC
Q 004298 158 DSEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNA---SIYKVALSKD 232 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~---~I~~v~~SpD 232 (763)
.+..+. ++++++ ++++|+.||.|++|+...... ..+. .... .|.+++|+||
T Consensus 162 ----~v~~~~--~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~ 217 (615)
T 1pgu_A 162 ----RINACH--LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR------------------THHKQGSFVRDVEFSPD 217 (615)
T ss_dssp ----CEEEEE--ECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC------------------SSSCTTCCEEEEEECST
T ss_pred ----cEEEEE--ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec------------------ccCCCCceEEEEEECCC
Confidence 122233 445555 899999999999999665432 1221 1112 5889999999
Q ss_pred -CCEEEEEeecC
Q 004298 233 -LFHLTVLCSGQ 243 (763)
Q Consensus 233 -g~~Llv~~~d~ 243 (763)
++.+++++.++
T Consensus 218 ~~~~l~~~~~dg 229 (615)
T 1pgu_A 218 SGEFVITVGSDR 229 (615)
T ss_dssp TCCEEEEEETTC
T ss_pred CCCEEEEEeCCC
Confidence 99999888766
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-16 Score=172.86 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
+.++.+ +++++++|+.||.|++|++ +++.+..+. |...|.+++|+|++ .|++|+.||+|++||+++++.+..+.+
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 566555 5689999999999999998 677777776 88899999999998 999999999999999999999999999
Q ss_pred cCCceeEEEee--cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCC-c-c------------cccCCcccccc
Q 004298 102 HTVAVVCLNWE--EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGD-T-G------------FTDDSEDSFRE 165 (763)
Q Consensus 102 h~~~V~~l~ws--~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~-~-~------------~~~~~~~~~~~ 165 (763)
|...|.++.|+ +++..+++++ .|+++++||............... . . ........+.
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 274 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGS------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR- 274 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEE------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE-
T ss_pred CCCccEEEEEecCCCCCEEEEEc------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE-
Confidence 99999999998 4678899988 899999999876321110000000 0 0 0000011111
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+..++++++++|+.||.|++|+...... ..+. .+...|.+++|+|+++.+++++.++
T Consensus 275 ---~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 275 ---TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS------------------GHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp ---EEEEETTEEEEEETTSCEEEEETTTTEEEEEEC------------------CCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ---EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------------CCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 1235567899999999999999765322 2211 1224588899999999998887766
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=176.00 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=117.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe-
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK- 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~- 94 (763)
.+.|.+++|+|++++||+++.|+.|++|++.. + ....+ .|...|.+++|+|||++|++|+.||.|++||+++++
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 34599999999999999999999999999943 3 34444 378899999999999999999999999999999887
Q ss_pred --EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC-C--CCcc-----cCCcccccCCcccc
Q 004298 95 --LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ-M--PGLV-----SGDTGFTDDSEDSF 163 (763)
Q Consensus 95 --~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~-l--~~~~-----s~~~~~~~~~~~~~ 163 (763)
....+.. |...|++++|+|++..+++++ .|+.+++||....... . +... .+...........+
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 208 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGC------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEE------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEe------CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceE
Confidence 4677877 999999999999999999998 8999999997532100 0 0000 00000000111222
Q ss_pred cceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 164 RELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 164 ~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
..+ .+++++++|++|+.||+|++|+....
T Consensus 209 ~~~--~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 209 HAV--GFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEE--EECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEE--EECCCCCEEEEEeCCCcEEEEECCCC
Confidence 233 34577789999999999999986543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-16 Score=161.66 Aligned_cols=210 Identities=20% Similarity=0.183 Sum_probs=155.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc----CceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN----WQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~----~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
..|.+++|+|+++++++++.||.|.+|++. ++.+..+. |...|.+++| +++++++|+.||.|++|| .++..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~ 135 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV 135 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE
Confidence 459999999999999999999999999982 23455554 7788999999 678999999999999999 78888
Q ss_pred EEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
..+..|...|.++.|.| ++..+++++ .|+.+++||.......... .+ ...+..+. +++++.
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~---~~-------~~~i~~~~--~~~~~~ 197 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTAS------ADKTIKLWQNDKVIKTFSG---IH-------NDVVRHLA--VVDDGH 197 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEE------TTSCEEEEETTEEEEEECS---SC-------SSCEEEEE--EEETTE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEE------CCCCEEEEecCceEEEEec---cC-------cccEEEEE--EcCCCe
Confidence 99999999999999998 888898888 8999999994432111111 01 11222233 334555
Q ss_pred EEEEEcCCCcEEEEEcCce-eeeeeeecccc---------cccccCCCCCceeeec--------------cceeeEEecC
Q 004298 176 ILCSGDKDGSICFNIFGIF-PIGKINIHKFH---------VAIPNADEQGTCRLLN--------------ASIYKVALSK 231 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~---------~~~~s~~~~~~~~l~~--------------~~I~~v~~Sp 231 (763)
+++|+.||.|++|+.... .+..+..+... ....+++.++.+++|+ .+|.+++|+|
T Consensus 198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 276 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS 276 (313)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT
T ss_pred -EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc
Confidence 889999999999987643 22233222111 1245667888999997 4789999999
Q ss_pred CCCEEEEEeecCccccccCCCCCCcEEEEEeecccc
Q 004298 232 DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTSIF 267 (763)
Q Consensus 232 Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~~l 267 (763)
||+ +++++.++ .++++.++...+
T Consensus 277 ~~~-~~~~~~dg------------~i~iw~~~~~~~ 299 (313)
T 3odt_A 277 NGD-IIVGSSDN------------LVRIFSQEKSRW 299 (313)
T ss_dssp TSC-EEEEETTS------------CEEEEESCGGGC
T ss_pred CCC-EEEEeCCC------------cEEEEeCCCCce
Confidence 998 55555554 788888776543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-16 Score=165.70 Aligned_cols=193 Identities=13% Similarity=0.015 Sum_probs=123.1
Q ss_pred CeEEEEEcCC----CCEEEEEeC--------------------CCeEEEEEc--cCceEEEec-CCCcEEEEEEcc---C
Q 004298 23 QIKIAEWNPE----KDLLAMATE--------------------DSKILLHRF--NWQRLWTIS-PGKSVTSLCWRP---D 72 (763)
Q Consensus 23 ~V~~l~~sP~----~~lLA~~s~--------------------Dg~V~v~~l--~~~~v~~~~-~~~~V~~l~wsp---D 72 (763)
.|..++++|+ ++.+++++. |+.|++|.+ +|+.+.... |+..++.++|+| |
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5888999999 888887664 566666666 244444332 555677778888 6
Q ss_pred CCEEEEEEcCCcEEEEEccCCeEEEEecccC---CceeEEEeecCCCceeccCCC------CCcccCCceeecCCCCCCC
Q 004298 73 GKAIAVGLEDGTITLHDVENGKLLRSLKSHT---VAVVCLNWEEDAQPSKNDFGN------IPTYEDRTSRFFPPAPRIP 143 (763)
Q Consensus 73 G~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~---~~V~~l~ws~~~~~l~s~s~~------~~~~~d~~i~~wd~~~~~~ 143 (763)
|..||+|+.|++|+|||+++|++++++.+|. ..+.+++|+|+|..+++++.. .....|+++++||......
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 6889999999999999999999999998754 367888999999877443211 1223799999998765311
Q ss_pred C--CC-CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceee
Q 004298 144 Q--MP-GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRL 219 (763)
Q Consensus 144 ~--l~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l 219 (763)
. +. ....++.... +. .+..+.++++|+.||+|++|+...-. +.++.-|. +
T Consensus 273 l~v~~~~~p~Gh~~~~---------ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~----------~----- 326 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRF---------LE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS----------D----- 326 (356)
T ss_dssp EEEEEECCCTTCCCCE---------EE--EEEETTEEEEEETTSCEEEEETTTCSEEEEECCC-----------------
T ss_pred EEEEEeeccCCCccee---------Ec--cccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC----------C-----
Confidence 0 00 0001111100 11 11124579999999999999976532 22221000 0
Q ss_pred eccceeeEEecCCCCEEEEEeecC
Q 004298 220 LNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 220 ~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+..++|||||++|+.++.|+
T Consensus 327 --~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 327 --QHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTS
T ss_pred --CeEEEEEECCCCCEEEEEECCC
Confidence 1233589999999999888766
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-16 Score=194.48 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEcc--CCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRP--DGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
.+.|.+++|+|+++++|+++.||.|++|++ +++.+..+. |...|.+++|+| ++.++++|+.||.|++||+++++.+
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence 345999999999999999999999999999 677777765 788999999999 5568999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+.+|...|++++|+|++..+++++ .|+++++||...
T Consensus 737 ~~~~~h~~~v~~~~~sp~~~~l~s~s------~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 737 NTMFGHTNSVNHCRFSPDDELLASCS------ADGTLRLWDVRS 774 (1249)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEE------SSSEEEEEEGGG
T ss_pred heecCCCCCEEEEEEecCCCEEEEEE------CCCeEEEEeCCC
Confidence 99999999999999999999999998 899999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=171.47 Aligned_cols=200 Identities=13% Similarity=0.039 Sum_probs=149.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEc--cCCCEEEEEEcCCcEEEEEccCCe--
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWR--PDGKAIAVGLEDGTITLHDVENGK-- 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~ws--pDG~~Lasg~~Dg~V~lwdve~g~-- 94 (763)
.+.|.+++|+|++ ++++|+.||+|++|++ +++.+..+. |...|.+++|+ |+++++++|+.||.|++||+++++
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 240 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence 3459999999988 9999999999999999 667777776 78899999999 588999999999999999998765
Q ss_pred ---------------------EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 95 ---------------------LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 95 ---------------------~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
.+..+.+|...|.++ ++++..+++++ .|+.+++||..... ......++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~------~d~~i~vwd~~~~~--~~~~~~~~~ 310 (464)
T 3v7d_B 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS------YDNTLIVWDVAQMK--CLYILSGHT 310 (464)
T ss_dssp ------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE------TTSCEEEEETTTTE--EEEEECCCS
T ss_pred ccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe------CCCeEEEEECCCCc--EEEEecCCC
Confidence 255677888888887 56788899988 89999999987521 111111222
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeeccc--------ccccccCCCCCceeeec---
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKF--------HVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~--------~~~~~s~~~~~~~~l~~--- 221 (763)
. .+.. ..++++++.+++|+.||+|++|+.... .+..+..+.. .....+++.++.+++|+
T Consensus 311 ~-------~v~~--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 311 D-------RIYS--TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp S-------CEEE--EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred C-------CEEE--EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 2 1222 334567789999999999999987542 2233322221 12234677899999997
Q ss_pred ----------cceeeEEecCCCCEEEEEe
Q 004298 222 ----------ASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 222 ----------~~I~~v~~SpDg~~Llv~~ 240 (763)
..+..++|+++++.+++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 382 YSRKFSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp CCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred CceeeeecCCCCccEEEEEeCCCEEEEec
Confidence 2456679999999888766
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=168.22 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=119.2
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEcc-C--ceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFN-W--QRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~-~--~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+| ++++||+++.|++|++|++. + +.+..+. |...|++++|+|+ |++|++|+.||+|++||++++
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 4599999986 48999999999999999994 3 3555554 7789999999998 889999999999999999876
Q ss_pred eE---EEEecccCCceeEEEeecC-----------------CCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCC
Q 004298 94 KL---LRSLKSHTVAVVCLNWEED-----------------AQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGD 152 (763)
Q Consensus 94 ~~---~~~l~~h~~~V~~l~ws~~-----------------~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~ 152 (763)
.. ...+.+|...|.++.|+|+ +..+++++ .|+++++||...... .......+|
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------~D~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG------CDNLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB------TTSBCCEEEECTTSCEEEEECCBCC
T ss_pred CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec------CCCeEEEEEeCCCCccceeeecccC
Confidence 32 3456789999999999997 36788888 899999999853210 011112233
Q ss_pred cccccCCcccccceecccCC--CeeEEEEEcCCCcEEEEEcCc
Q 004298 153 TGFTDDSEDSFRELANSSHQ--RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~--~~~~L~sgs~DG~I~lw~~~~ 193 (763)
... +..+.+.+.. ..++|++|+.||+|++|+...
T Consensus 212 ~~~-------V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 212 SDW-------VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SSC-------EEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCc-------eEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 322 2334443322 237899999999999998654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=174.09 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=141.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEccC----c---eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc-
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFNW----Q---RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE- 91 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~----~---~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve- 91 (763)
.+.|.+++|+| ++++||+|+.||+|+||++.. . ....+.|...|++++|+|++++|++|+.||.|++||++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 34599999999 999999999999999999832 2 24455688999999999999999999999999999995
Q ss_pred --CCeEEEEecc------------cCCceeEEE--eecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccC--Cc
Q 004298 92 --NGKLLRSLKS------------HTVAVVCLN--WEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSG--DT 153 (763)
Q Consensus 92 --~g~~~~~l~~------------h~~~V~~l~--ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~--~~ 153 (763)
+++....+.. +...+.++. |++++..+++++ .|+.+++||...... .....+ +.
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~--~~~~~~~~h~ 214 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT------NLSRVIIFDIRTLER--LQIIENSPRH 214 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE------TTSEEEEEETTTCCE--EEEEECCGGG
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCee--eEEEccCCCC
Confidence 5655544432 445666666 557888999988 899999999876311 111111 11
Q ss_pred ccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeE----E
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKV----A 228 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v----~ 228 (763)
..+..+ .+++++++|++|+.||+|++|+...... ..+... .+.+|.++ +
T Consensus 215 -------~~v~~~--~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~ 268 (437)
T 3gre_A 215 -------GAVSSI--CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-----------------DHAPITHVEVCQF 268 (437)
T ss_dssp -------CCEEEE--EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-----------------TCEEEEEEEECTT
T ss_pred -------CceEEE--EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-----------------CCCceEEEEeccc
Confidence 122223 3457788999999999999999765321 222100 11357788 5
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
|+||+..+++++.|+ .++++.+..
T Consensus 269 ~s~~~~~l~s~~~dg------------~i~iwd~~~ 292 (437)
T 3gre_A 269 YGKNSVIVVGGSSKT------------FLTIWNFVK 292 (437)
T ss_dssp TCTTEEEEEEESTTE------------EEEEEETTT
T ss_pred cCCCccEEEEEcCCC------------cEEEEEcCC
Confidence 556777888776655 677776654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=172.82 Aligned_cols=163 Identities=7% Similarity=0.042 Sum_probs=125.2
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCC--
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDG-- 83 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg-- 83 (763)
..++++.+.+. |.+++|+|+|+++++++.++.+.+|..+++.+.... |+..|.+++|+|||+++++++.|+
T Consensus 168 ~~~~~~~~~~~----V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~ 243 (365)
T 4h5i_A 168 TEKFEIETRGE----VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK 243 (365)
T ss_dssp EEEEEEECSSC----CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred cEEEEeCCCCc----eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence 33445555544 999999999999999997765555555777665432 667899999999999999999887
Q ss_pred --cEEEEEccCCeE----EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 84 --TITLHDVENGKL----LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 84 --~V~lwdve~g~~----~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
.+++|++..+.. .+.+.+|...|++++|+|+|+++++|+ .|++|++||..... .+.....+|...+
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs------~D~~V~iwd~~~~~-~~~~~~~gH~~~V- 315 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS------NDNSIALVKLKDLS-MSKIFKQAHSFAI- 315 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE------TTSCEEEEETTTTE-EEEEETTSSSSCE-
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc------CCCEEEEEECCCCc-EEEEecCcccCCE-
Confidence 688899887653 356778999999999999999999998 89999999987531 1111123444333
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
...+++|++++|++|+.||+|++|++
T Consensus 316 --------~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 316 --------TEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp --------EEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred --------EEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 33456788999999999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-16 Score=166.08 Aligned_cols=184 Identities=8% Similarity=-0.059 Sum_probs=130.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce----------EEEe--cCCCcEEEEEEcc--CCCEEEEEEcCCcEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR----------LWTI--SPGKSVTSLCWRP--DGKAIAVGLEDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~----------v~~~--~~~~~V~~l~wsp--DG~~Lasg~~Dg~V~lw 88 (763)
.|.++.|+|+ +++++.|++|++|+.+++. +..+ .|...|.+++|+| +|+++++|+.||+|++|
T Consensus 78 ~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 78 NPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154 (343)
T ss_dssp CCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred CceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 3777888988 8999999999999875331 2222 2446799999999 99999999999999999
Q ss_pred EccCCeEEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccC-CcccccCCcccccce
Q 004298 89 DVENGKLLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSG-DTGFTDDSEDSFREL 166 (763)
Q Consensus 89 dve~g~~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~-~~~~~~~~~~~~~~~ 166 (763)
|+++++.+..... |...|++++|+|++.++++|+ .|+.+++||.+..... .....+ |... +..
T Consensus 155 d~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~------~dg~i~iwd~~~~~~~-~~~~~~~h~~~-------v~~- 219 (343)
T 3lrv_A 155 SYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS------PDGILDVYNLSSPDQA-SSRFPVDEEAK-------IKE- 219 (343)
T ss_dssp ESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC------TTSCEEEEESSCTTSC-CEECCCCTTSC-------EEE-
T ss_pred ECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc------CCCEEEEEECCCCCCC-ccEEeccCCCC-------EEE-
Confidence 9999998776643 456899999999999999988 8999999999864221 011112 3222 223
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccce--eeEEecCCCCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASI--YKVALSKDLFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I--~~v~~SpDg~~Llv~~~ 241 (763)
..+++++.+|++|+ |++|++|+...... ..+.... .. ...+ .+++|+|+|++|++++.
T Consensus 220 -l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 220 -VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----------IP-----EFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp -EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----------C----------CCEEEEECTTSSEEEEEET
T ss_pred -EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----------cc-----cccccceEEEECCCCCEEEEecC
Confidence 34567788999999 55999999765321 1111000 00 0112 36999999999998765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=170.06 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc---eEEEec----------------------------------------
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQ---RLWTIS---------------------------------------- 59 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~---~v~~~~---------------------------------------- 59 (763)
+.+++|+|+|++++++ .++.|.+|++ +|+ .+....
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 8899999999976655 5789999998 676 433322
Q ss_pred ---------------CCCcEEEEEEccCCCEE-EEEEcCCcEEEEEcc--CCeEEEEec--ccCCceeEEEeecCCCcee
Q 004298 60 ---------------PGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVE--NGKLLRSLK--SHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 60 ---------------~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve--~g~~~~~l~--~h~~~V~~l~ws~~~~~l~ 119 (763)
+...|++++|+|||++| ++|+.||.|++||+. +++.+..+. .|...|++++|+|++..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 11259999999999996 889999999999999 888888886 5678999999999999999
Q ss_pred ccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCC---eeEEEEEcCCCcEEEEEcCce
Q 004298 120 NDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQR---FSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 120 s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+++ .++.+.+|+....... ......++.. .+..+. ++++ +++|++|+.||+|++|++...
T Consensus 166 ~~~------~~g~v~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~--~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 166 IAD------KFGDVYSIDINSIPEEKFTQEPILGHVS-------MLTDVH--LIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEE------TTSEEEEEETTSCCCSSCCCCCSEECSS-------CEEEEE--EEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred EEe------CCCcEEEEecCCcccccccceeeecccC-------ceEEEE--EcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 997 7999999987653211 1111122222 223333 3455 789999999999999986532
Q ss_pred e-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 195 P-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 195 ~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
. +..+. .-+...|.+++|+ ||++|++++.|+ .++++.+...
T Consensus 231 ~~~~~~~-----------------~~h~~~v~~~~~s-d~~~l~s~~~d~------------~v~vwd~~~~ 272 (450)
T 2vdu_B 231 FIVDKWL-----------------FGHKHFVSSICCG-KDYLLLSAGGDD------------KIFAWDWKTG 272 (450)
T ss_dssp TCEEEEC-----------------CCCSSCEEEEEEC-STTEEEEEESSS------------EEEEEETTTC
T ss_pred ceeeeee-----------------cCCCCceEEEEEC-CCCEEEEEeCCC------------eEEEEECCCC
Confidence 1 11110 0122468899999 999999887765 7778876654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=165.93 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=147.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...|.+++| +++++++|+.||.|++|++ +++.+..+. |...|.+++| ++++|++|+.||+|++||+++++.+..
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 345877766 7899999999999999999 677777776 7889999998 889999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCC-CCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQM-PGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
+.+|...|.++.|++ ..+++++ .|+.+++||........ .....++.. .+..+.+ +++.+
T Consensus 209 ~~~h~~~v~~l~~~~--~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~v~~~~~----~~~~l 269 (435)
T 1p22_A 209 LIHHCEAVLHLRFNN--GMMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRA-------AVNVVDF----DDKYI 269 (435)
T ss_dssp ECCCCSCEEEEECCT--TEEEEEE------TTSCEEEEECSSSSCCEEEEEECCCSS-------CEEEEEE----ETTEE
T ss_pred EcCCCCcEEEEEEcC--CEEEEee------CCCcEEEEeCCCCCCceeeeEecCCCC-------cEEEEEe----CCCEE
Confidence 999999999999974 4788887 89999999987532110 011122222 2222322 45789
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeecccc--------cccccCCCCCceeeec--------------cceeeEEecCCCC
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKFH--------VAIPNADEQGTCRLLN--------------ASIYKVALSKDLF 234 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~~--------~~~~s~~~~~~~~l~~--------------~~I~~v~~SpDg~ 234 (763)
++|+.||.|++|+.... .+..+..+... ....+++.++.+++|+ ..|.+++| |++
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSS
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCC
Confidence 99999999999987653 22223222211 1234667888999997 35777777 778
Q ss_pred EEEEEeecC
Q 004298 235 HLTVLCSGQ 243 (763)
Q Consensus 235 ~Llv~~~d~ 243 (763)
.+++++.++
T Consensus 348 ~l~sg~~dg 356 (435)
T 1p22_A 348 RIVSGAYDG 356 (435)
T ss_dssp EEEEEETTS
T ss_pred EEEEEeCCC
Confidence 888887766
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-15 Score=164.01 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=150.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+ ++.+++++.||.|++|++ +++.+..+. |...|.+++| +|+++++|+.||.|++||+++++.+..+
T Consensus 200 ~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 200 STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 348888886 567999999999999998 566666664 7778999988 7889999999999999999999999999
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+|...|.++.| ++..+++++ .|+.+++||..... ......++...+ ..+. .+++++++
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~------~d~~i~i~d~~~~~--~~~~~~~~~~~v-------~~~~----~~~~~l~~ 334 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGS------LDTSIRVWDVETGN--CIHTLTGHQSLT-------SGME----LKDNILVS 334 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEE------TTSCEEEEETTTCC--EEEEECCCCSCE-------EEEE----EETTEEEE
T ss_pred cCCCCceEEEEE--CCCEEEEEe------CCCeEEEEECCCCC--EEEEEcCCcccE-------EEEE----EeCCEEEE
Confidence 999999999999 678888887 79999999987531 111111222111 1121 23468999
Q ss_pred EcCCCcEEEEEcCce-eeeeeee---ccc--------ccccccCCCCCceeeec-------------------cceeeEE
Q 004298 180 GDKDGSICFNIFGIF-PIGKINI---HKF--------HVAIPNADEQGTCRLLN-------------------ASIYKVA 228 (763)
Q Consensus 180 gs~DG~I~lw~~~~~-~ig~~~i---~~~--------~~~~~s~~~~~~~~l~~-------------------~~I~~v~ 228 (763)
|+.||.|++|+.... .+..+.. +.. .....+++.++.+++|+ +.|.+++
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 414 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence 999999999987543 2222221 111 11234667788899987 3478899
Q ss_pred ecCCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 229 LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 229 ~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
|+|+|..+++++.++. ....++++.++.
T Consensus 415 ~s~~~~~la~~~~dg~--------~~~~l~v~df~~ 442 (445)
T 2ovr_B 415 ASNTKLVCAVGSRNGT--------EETKLLVLDFDV 442 (445)
T ss_dssp ECSSEEEEEEECSSSS--------SCCEEEEEECCC
T ss_pred ecCCEEEEEEcccCCC--------CccEEEEEECCC
Confidence 9999998888876651 122466666553
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=160.94 Aligned_cols=157 Identities=16% Similarity=0.263 Sum_probs=123.0
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~g 93 (763)
+.|.+++|+|+ +++|++++.||.|++|++... .+..+. |...|.+++|+|+ |++|++|+.||.|++||+.++
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 45999999987 899999999999999999443 444444 7789999999999 999999999999999999877
Q ss_pred --eEEEEecccCCceeEEEeec-------------CCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccc
Q 004298 94 --KLLRSLKSHTVAVVCLNWEE-------------DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFT 156 (763)
Q Consensus 94 --~~~~~l~~h~~~V~~l~ws~-------------~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~ 156 (763)
.....+..|...|.++.|+| ++..+++++ .|+.+++||....... ......++..
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~h~~-- 207 (379)
T 3jrp_A 136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG------ADNLVKIWKYNSDAQTYVLESTLEGHSD-- 207 (379)
T ss_dssp SCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE------TTSCEEEEEEETTTTEEEEEEEECCCSS--
T ss_pred CceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe------CCCeEEEEEecCCCcceeeEEEEecccC--
Confidence 34456778999999999999 688899988 8999999998653211 1011112222
Q ss_pred cCCcccccceecccCCC---eeEEEEEcCCCcEEEEEcCc
Q 004298 157 DDSEDSFRELANSSHQR---FSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 157 ~~~~~~~~~~~~~~~~~---~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+..+ .++++ +++|++|+.||.|++|+...
T Consensus 208 -----~v~~~--~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 208 -----WVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -----CEEEE--EECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred -----cEeEE--EECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 22233 34566 78999999999999998765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-15 Score=171.03 Aligned_cols=192 Identities=13% Similarity=0.155 Sum_probs=142.5
Q ss_pred CCC-eEEEEEcC--CCCEEEEEeCCCeEEEEEc-cC--------ceEEEec-CCCcEEEEEEccCCCEEEEEEcC----C
Q 004298 21 ASQ-IKIAEWNP--EKDLLAMATEDSKILLHRF-NW--------QRLWTIS-PGKSVTSLCWRPDGKAIAVGLED----G 83 (763)
Q Consensus 21 ~~~-V~~l~~sP--~~~lLA~~s~Dg~V~v~~l-~~--------~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D----g 83 (763)
... |.+++|+| ++++||+++.||.|++|++ ++ +.+..+. |...|.+++|+|||++|++++.+ +
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 142 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG 142 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCcc
Confidence 456 99999999 9999999999999999999 33 3444444 77899999999999999999988 6
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
.|++|| +++.+..+.+|...|+++.|+|++. .+++++ .|+.+++||..... ......++.. ....
T Consensus 143 ~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~d~~v~vwd~~~~~--~~~~~~~~~~----~~~~ 208 (615)
T 1pgu_A 143 VFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVG------DDGSVVFYQGPPFK--FSASDRTHHK----QGSF 208 (615)
T ss_dssp EEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEE------TTTEEEEEETTTBE--EEEEECSSSC----TTCC
T ss_pred EEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEe------CCCcEEEEeCCCcc--eeeeecccCC----CCce
Confidence 888888 6788899999999999999999997 688887 89999999976521 1111111211 0002
Q ss_pred ccceecccCCC-eeEEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 163 FRELANSSHQR-FSILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 163 ~~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
+..+ .++++ +++|++|+.||.|++|+...... ..+... . ......|.+++|+ +++.+++++
T Consensus 209 v~~~--~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~----------~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 209 VRDV--EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD----Q----------EPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp EEEE--EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT----T----------BCCCSCEEEEEES-SSSEEEEEE
T ss_pred EEEE--EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccc----c----------cccCCceEEEEEc-CCCEEEEEc
Confidence 2223 34567 88999999999999999654321 111000 0 0112468899999 999999888
Q ss_pred ecC
Q 004298 241 SGQ 243 (763)
Q Consensus 241 ~d~ 243 (763)
.++
T Consensus 272 ~d~ 274 (615)
T 1pgu_A 272 ADA 274 (615)
T ss_dssp TTS
T ss_pred CCC
Confidence 765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=180.95 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=123.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE----
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL---- 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~---- 96 (763)
..|.+++|+| +++||+++.|++|++|++ +++.+..+.+...|++++|+|+|++|++|+.||.|++||+++++..
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 4599999999 889999999999999999 6777777777789999999999999999999999999999988764
Q ss_pred -------EEecccCCceeEEEeecCC-CceeccCCCCCcccCCceeecCCCCCCC--CCCCc-----ccCCc--ccccCC
Q 004298 97 -------RSLKSHTVAVVCLNWEEDA-QPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMPGL-----VSGDT--GFTDDS 159 (763)
Q Consensus 97 -------~~l~~h~~~V~~l~ws~~~-~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~~~-----~s~~~--~~~~~~ 159 (763)
..+.+|.+.|++++|+|++ ..+++++ .|+.+ +||...... .+..+ ..+.. ......
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEe------CCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 2346788999999999964 6777777 89999 999876311 01110 00000 000000
Q ss_pred cccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 160 EDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...+.. ..+++++++|++|+.||+|++|+...
T Consensus 211 ~~~V~~--v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 211 TPKVIQ--SLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp CCCEEE--EEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCCeEE--EEEcCCCCEEEEEECCCeEEEEECCC
Confidence 122333 34567788999999999999999754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=160.30 Aligned_cols=113 Identities=22% Similarity=0.313 Sum_probs=96.8
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEccC----------ceEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFNW----------QRLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~~----------~~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~ 86 (763)
..|.+++|+| ++++|++++.||.|++|++.. +.+..+. |...|.+++|+|+ +++|++|+.||.|+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 4599999999 599999999999999999944 3355554 7789999999999 99999999999999
Q ss_pred EEEccCCe------------------------------------------------------------EEEEecccCCce
Q 004298 87 LHDVENGK------------------------------------------------------------LLRSLKSHTVAV 106 (763)
Q Consensus 87 lwdve~g~------------------------------------------------------------~~~~l~~h~~~V 106 (763)
+||+++++ .+..+.+|...|
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred EecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 99987543 145566789999
Q ss_pred eEEEeecCC----CceeccCCCCCcccCCceeecCCCC
Q 004298 107 VCLNWEEDA----QPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 107 ~~l~ws~~~----~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++++|+|++ .++++++ .|+.+++||...
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~------~dg~i~iwd~~~ 249 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGC------KDGRIRIFKITE 249 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEE------TTSCEEEEEEEE
T ss_pred eEEEECCCCCCcceEEEEEc------CCCeEEEEeCCC
Confidence 999999998 7899988 899999998765
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=158.77 Aligned_cols=151 Identities=12% Similarity=0.037 Sum_probs=110.3
Q ss_pred CeEEEEEcC---CCCEEEEEeCCCeEEEEEc-cCceEEEec-C---CCcEEEEEEccCCCEE------------EEEEcC
Q 004298 23 QIKIAEWNP---EKDLLAMATEDSKILLHRF-NWQRLWTIS-P---GKSVTSLCWRPDGKAI------------AVGLED 82 (763)
Q Consensus 23 ~V~~l~~sP---~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~---~~~V~~l~wspDG~~L------------asg~~D 82 (763)
.|..++|+| ++++||+++.|++|+||++ +|+.+.++. + ...+.+++|+|||+++ ++|+.|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 477778888 6688999999999999999 688888886 2 2367888999999987 668899
Q ss_pred CcEEEEEccCCeEEEEe-----cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 83 GTITLHDVENGKLLRSL-----KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l-----~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
++|++||..+|+.+..+ .+|...+.+..++ +..+++++ .|+++++||..... ......+|...+
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS------~DgTIkIWDl~tGk--~l~tL~gH~~~v- 328 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAIL------TSGTIAIWDLLLGQ--CTALLPPVSDQH- 328 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEE------TTSCEEEEETTTCS--EEEEECCC--CC-
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEc------CCCcEEEEECCCCc--EEEEecCCCCCe-
Confidence 99999999999988765 3666555444444 77888887 89999999997631 111122222211
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
+ ....+++++++|++|+.||+|++|++
T Consensus 329 -----v--s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 -----W--SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----C--CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----E--EEEEECCCCCEEEEEECCCcEEEecC
Confidence 0 11346788999999999999999984
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=158.37 Aligned_cols=203 Identities=11% Similarity=0.010 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCC----------------------------
Q 004298 24 IKIAEWNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDG---------------------------- 73 (763)
Q Consensus 24 V~~l~~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG---------------------------- 73 (763)
+..++|+++++.++ +++.|++|++|+. +++.+..+.+...|.+++|++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence 55566666666554 3455678999998 67777777777788888888753
Q ss_pred -------CEEEE--EEcCCcEEEEEccCCe----------------EEEEecccCCceeEEEeecCCCceeccCCCCCcc
Q 004298 74 -------KAIAV--GLEDGTITLHDVENGK----------------LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTY 128 (763)
Q Consensus 74 -------~~Las--g~~Dg~V~lwdve~g~----------------~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~ 128 (763)
+++|+ |+.||.|++||+.+++ .+..+.+|...|++++|+|++.++++++
T Consensus 141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s------ 214 (355)
T 3vu4_A 141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS------ 214 (355)
T ss_dssp EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE------
T ss_pred ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe------
Confidence 34455 4689999999998765 2678899999999999999999999998
Q ss_pred cCCc-eeecCCCCCCCCCCCccc-C-CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeee-ccc
Q 004298 129 EDRT-SRFFPPAPRIPQMPGLVS-G-DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINI-HKF 204 (763)
Q Consensus 129 ~d~~-i~~wd~~~~~~~l~~~~s-~-~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i-~~~ 204 (763)
.|++ +++||..... ...... + +.. .+. ...+++++++|++|+.||+|++|++.......... ...
T Consensus 215 ~d~~~v~iwd~~~~~--~~~~~~~g~h~~-------~v~--~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~ 283 (355)
T 3vu4_A 215 QDGTIIRVFKTEDGV--LVREFRRGLDRA-------DVV--DMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW 283 (355)
T ss_dssp TTCSEEEEEETTTCC--EEEEEECTTCCS-------CEE--EEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred CCCCEEEEEECCCCc--EEEEEEcCCCCC-------cEE--EEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence 8998 9999987531 111111 1 222 222 33456788899999999999999876432211111 000
Q ss_pred --ccccccCCCCCceeeec---cceeeEEecCCCCEEEEEeecC
Q 004298 205 --HVAIPNADEQGTCRLLN---ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 205 --~~~~~s~~~~~~~~l~~---~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+....+........+.. .+...++|++||+.+++.+.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 00000000000111111 1235689999999999998766
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=156.69 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=108.6
Q ss_pred CEEEE--EeCCCeEEEEEccCce-----------------EEEec-CCCcEEEEEEccCCCEEEEEEcCCc-EEEEEccC
Q 004298 34 DLLAM--ATEDSKILLHRFNWQR-----------------LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGT-ITLHDVEN 92 (763)
Q Consensus 34 ~lLA~--~s~Dg~V~v~~l~~~~-----------------v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~-V~lwdve~ 92 (763)
.++|+ |+.||.|++|++.... +..+. |...|++++|+|||++||+|+.||+ |++||+++
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 34555 4677888888884322 34443 7789999999999999999999998 99999999
Q ss_pred CeEEEEec-c-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCc---------ccCCcccc---cC
Q 004298 93 GKLLRSLK-S-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGL---------VSGDTGFT---DD 158 (763)
Q Consensus 93 g~~~~~l~-~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~---------~s~~~~~~---~~ 158 (763)
++.+..+. + |...|.+++|+|+++++++++ .|+++++||........... ......+. ..
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVS------DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEE------TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE------CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec
Confidence 99999998 5 999999999999999999998 89999999986531111000 00000000 00
Q ss_pred CcccccceecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 159 SEDSFRELANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
...........+.++++.+++++.||.+++|.+
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 000000122345677889999999999999974
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=159.42 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=146.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE---
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL--- 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~--- 96 (763)
+.|.+++| +++++++|+.||.|++|++ +++.+..+. |...|.+++|++ ..+++|+.||.|++||+++++..
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee
Confidence 45999998 7889999999999999999 677777775 778899999974 59999999999999999987654
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
..+.+|...|.++.| ++..+++++ .|+.+++||..... ......++... +..+.+ ++++
T Consensus 250 ~~~~~~~~~v~~~~~--~~~~l~s~~------~dg~i~vwd~~~~~--~~~~~~~~~~~-------v~~~~~----~~~~ 308 (435)
T 1p22_A 250 RVLVGHRAAVNVVDF--DDKYIVSAS------GDRTIKVWNTSTCE--FVRTLNGHKRG-------IACLQY----RDRL 308 (435)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEE------TTSEEEEEETTTCC--EEEEEECCSSC-------EEEEEE----ETTE
T ss_pred eEecCCCCcEEEEEe--CCCEEEEEe------CCCeEEEEECCcCc--EEEEEcCCCCc-------EEEEEe----CCCE
Confidence 677889999999999 678888888 89999999987531 11111222221 122222 3468
Q ss_pred EEEEcCCCcEEEEEcCce-eeeeeeeccc--------ccccccCCCCCceeeec-----------------------cce
Q 004298 177 LCSGDKDGSICFNIFGIF-PIGKINIHKF--------HVAIPNADEQGTCRLLN-----------------------ASI 224 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~-~ig~~~i~~~--------~~~~~s~~~~~~~~l~~-----------------------~~I 224 (763)
+++|+.||+|++|+.... .+..+..+.. .....+++.++.+++|+ ++|
T Consensus 309 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v 388 (435)
T 1p22_A 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388 (435)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC
T ss_pred EEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe
Confidence 999999999999987643 2223322221 11234667788888886 246
Q ss_pred eeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 225 YKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 225 ~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
.+++| |++.+++++.|+ .++++.++..
T Consensus 389 ~~l~~--~~~~l~s~s~Dg------------~i~iwd~~~~ 415 (435)
T 1p22_A 389 FRLQF--DEFQIVSSSHDD------------TILIWDFLND 415 (435)
T ss_dssp CCEEE--CSSCEEECCSSS------------EEEEEC----
T ss_pred EEEEe--CCCEEEEEeCCC------------EEEEEECCCC
Confidence 66777 677777766555 7777776654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-14 Score=156.63 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=142.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+.|.+++|+ ++++++++.||.|++|++ +++.+..+. |...|.+++|+ ++.+++|+.||.|++||+++++.+..
T Consensus 159 ~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~ 234 (445)
T 2ovr_B 159 TGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHV 234 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred CCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 3459999998 579999999999999999 666677765 77889999995 57899999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+.+|...|.++.| ++..+++++ .|+.+++||..... ......++.. .+..+.+ +++.++
T Consensus 235 ~~~~~~~v~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~--~~~~~~~~~~-------~v~~~~~----~~~~l~ 293 (445)
T 2ovr_B 235 LMGHVAAVRCVQY--DGRRVVSGA------YDFMVKVWDPETET--CLHTLQGHTN-------RVYSLQF----DGIHVV 293 (445)
T ss_dssp EECCSSCEEEEEE--CSSCEEEEE------TTSCEEEEEGGGTE--EEEEECCCSS-------CEEEEEE----CSSEEE
T ss_pred EcCCcccEEEEEE--CCCEEEEEc------CCCEEEEEECCCCc--EeEEecCCCC-------ceEEEEE----CCCEEE
Confidence 9999999999999 678888887 89999999976421 1111112211 1222222 557899
Q ss_pred EEcCCCcEEEEEcCcee-eeeeeeccc--------ccccccCCCCCceeeec-----------------cceeeEEecCC
Q 004298 179 SGDKDGSICFNIFGIFP-IGKINIHKF--------HVAIPNADEQGTCRLLN-----------------ASIYKVALSKD 232 (763)
Q Consensus 179 sgs~DG~I~lw~~~~~~-ig~~~i~~~--------~~~~~s~~~~~~~~l~~-----------------~~I~~v~~SpD 232 (763)
+|+.||.|++|+..... +..+..+.. .....+++.++.+++|+ .+|.+++|+
T Consensus 294 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-- 371 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-- 371 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred EEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence 99999999999876532 222222111 11234666788899887 246677775
Q ss_pred CCEEEEEeecC
Q 004298 233 LFHLTVLCSGQ 243 (763)
Q Consensus 233 g~~Llv~~~d~ 243 (763)
++++++++.++
T Consensus 372 ~~~l~s~~~dg 382 (445)
T 2ovr_B 372 KNFVITSSDDG 382 (445)
T ss_dssp SSEEEEEETTS
T ss_pred CCEEEEEeCCC
Confidence 57788777666
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-14 Score=151.63 Aligned_cols=182 Identities=14% Similarity=0.075 Sum_probs=134.6
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLL-AMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lL-A~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~l 99 (763)
.+.+++|+|+++.+ ++++.|+.|++|++ +++.+..+..+..+.+++|+|||++|++++ .++.|++||+.+++.+..+
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence 38999999999876 56668999999999 777778887777999999999999886655 6799999999999998888
Q ss_pred cccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE-
Q 004298 100 KSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL- 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L- 177 (763)
..| ..+.+++|+|+++.+ ++++ .++.+++||...... ......+ .....+ .++++++.+
T Consensus 113 ~~~-~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~--~~~~~~~--------~~~~~~--~~~~dg~~l~ 173 (391)
T 1l0q_A 113 KTG-KSPLGLALSPDGKKLYVTNN------GDKTVSVINTVTKAV--INTVSVG--------RSPKGI--AVTPDGTKVY 173 (391)
T ss_dssp ECS-SSEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEE--EEEEECC--------SSEEEE--EECTTSSEEE
T ss_pred eCC-CCcceEEECCCCCEEEEEeC------CCCEEEEEECCCCcE--EEEEecC--------CCcceE--EECCCCCEEE
Confidence 754 578999999999876 5666 799999999865210 0000101 111122 344555555
Q ss_pred EEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 178 CSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++.+|.|++|+......-.... ....+..++|+|||++++++..
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVK------------------VEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE------------------CSSEEEEEEECTTSSEEEEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe------------------cCCCccceEECCCCCEEEEEec
Confidence 788899999999976543221100 0124678999999999998875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=150.12 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=119.1
Q ss_pred CCCeEEEEEcCCC--CEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 21 ASQIKIAEWNPEK--DLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 21 ~~~V~~l~~sP~~--~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
...|..++|++++ .++++++.|+.|++|++ +++.+..+. |...|++++|+|||++|++|+.||.|++||+++++.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence 4569999999875 57889999999999999 555555554 7789999999999999999999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCC-----CcccCCcccccCCcccccceecc
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMP-----GLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~-----~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
..+.. ...|.++.|+|++.+++++ .|+.+++||..... ..+. ....++. ..+. ..+
T Consensus 251 ~~~~~-~~~v~~~~~~~~~~~~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~-------~~v~--~l~ 313 (340)
T 4aow_A 251 YTLDG-GDIINALCFSPNRYWLCAA-------TGPSIKIWDLEGKIIVDELKQEVISTSSKAEP-------PQCT--SLA 313 (340)
T ss_dssp EEEEC-SSCEEEEEECSSSSEEEEE-------ETTEEEEEETTTTEEEEEECCC-------CCC-------CCEE--EEE
T ss_pred eeecC-CceEEeeecCCCCceeecc-------CCCEEEEEECCCCeEEEeccccceeeeccCCC-------CCEE--EEE
Confidence 98875 4689999999988766655 58999999987531 0000 0011121 1222 234
Q ss_pred cCCCeeEEEEEcCCCcEEEEEc
Q 004298 170 SHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
+++++++|++|+.||+|++|+.
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeC
Confidence 5678889999999999999984
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=171.79 Aligned_cols=158 Identities=16% Similarity=0.262 Sum_probs=123.4
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccC--CCEEEEEEcCCcEEEEEccC
Q 004298 21 ASQIKIAEWNPE--KDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPD--GKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 21 ~~~V~~l~~sP~--~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspD--G~~Lasg~~Dg~V~lwdve~ 92 (763)
.+.|.+++|+|+ ++++++|+.||.|++|++... .+..+. |...|++++|+|+ |+.+++|+.||.|++||+.+
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 345999999998 999999999999999999544 444444 7889999999999 99999999999999999987
Q ss_pred C--eEEEEecccCCceeEEEeec-------------CCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCccc
Q 004298 93 G--KLLRSLKSHTVAVVCLNWEE-------------DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGF 155 (763)
Q Consensus 93 g--~~~~~l~~h~~~V~~l~ws~-------------~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~ 155 (763)
+ .....+.+|...|.++.|+| ++..+++++ .|+.+++||....... ......++..
T Consensus 133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~~~~h~~- 205 (753)
T 3jro_A 133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG------ADNLVKIWKYNSDAQTYVLESTLEGHSD- 205 (753)
T ss_dssp SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE------TTSCEEEEEEETTTTEEEEEEEECCCSS-
T ss_pred CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE------CCCeEEEEeccCCcccceeeeeecCCCC-
Confidence 6 34456678999999999999 588899988 8999999998753211 1111112222
Q ss_pred ccCCcccccceecccCCC---eeEEEEEcCCCcEEEEEcCc
Q 004298 156 TDDSEDSFRELANSSHQR---FSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~---~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+..+ .++++ ++++++|+.||.|++|+...
T Consensus 206 ------~V~~l--~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 206 ------WVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CEEEE--EECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ------cEEEE--EeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 22233 34456 78999999999999998765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=159.16 Aligned_cols=158 Identities=17% Similarity=0.279 Sum_probs=122.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcc-C---ceEEEe-cCCCcEEEEEEccCCC-EEEEEEcCCcEEEEEccC-
Q 004298 21 ASQIKIAEWNP-EKDLLAMATEDSKILLHRFN-W---QRLWTI-SPGKSVTSLCWRPDGK-AIAVGLEDGTITLHDVEN- 92 (763)
Q Consensus 21 ~~~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~-~---~~v~~~-~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwdve~- 92 (763)
...|.+++|+| ++.++++++.||.|++|++. + ..+..+ .|...|++++|+|+|+ ++++|+.||.|++||+++
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 34599999999 67899999999999999994 3 355555 4788999999999997 689999999999999997
Q ss_pred CeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCCCCCCC------------CCCcccCCcccccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPAPRIPQ------------MPGLVSGDTGFTDDS 159 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~~~~~~------------l~~~~s~~~~~~~~~ 159 (763)
++.+..+..|...|+++.|+|++. .+++++ .|+.+++||+...... +.....++
T Consensus 311 ~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h------- 377 (430)
T 2xyi_A 311 KLKLHSFESHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH------- 377 (430)
T ss_dssp TSCSEEEECCSSCEEEEEECSSCTTEEEEEE------TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-------
T ss_pred CCCeEEeecCCCCEEEEEECCCCCCEEEEEe------CCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-------
Confidence 567888989999999999999996 577877 7999999998752111 00011111
Q ss_pred cccccceecccCCCee-EEEEEcCCCcEEEEEcCc
Q 004298 160 EDSFRELANSSHQRFS-ILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~ 193 (763)
...+..+. +++++. ++++++.||.|++|....
T Consensus 378 ~~~v~~~~--~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 378 TAKISDFS--WNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSCEEEEE--ECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCceEEE--ECCCCCCEEEEEECCCCEEEeEccc
Confidence 12233344 445666 899999999999998554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=152.77 Aligned_cols=203 Identities=10% Similarity=-0.013 Sum_probs=145.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEec------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTIS------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..+.+++|+|++.++++++.++.|.+|++. ++.+..+. |...|.+++|+|+|+++++++.||.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 347789999977888888888999999994 55554332 56689999999999999999999999999999999
Q ss_pred EEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+..+..|...+.+++|+|++..+ ++++ .++.+++||...... ....... ..+ ....++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~i~~~d~~~~~~--~~~~~~~--------~~~--~~~~~~~~ 264 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNW------ISEDISVIDRKTKLE--IRKTDKI--------GLP--RGLLLSKD 264 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEET------TTTEEEEEETTTTEE--EEECCCC--------SEE--EEEEECTT
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEec------CCCcEEEEECCCCcE--EEEecCC--------CCc--eEEEEcCC
Confidence 999999899999999999999877 4554 689999999865210 0000000 111 12234566
Q ss_pred eeEEEEEc--------CCCcEEEEEcCceee-eeee---------ecccc-cccccCCCCCceeeec-------------
Q 004298 174 FSILCSGD--------KDGSICFNIFGIFPI-GKIN---------IHKFH-VAIPNADEQGTCRLLN------------- 221 (763)
Q Consensus 174 ~~~L~sgs--------~DG~I~lw~~~~~~i-g~~~---------i~~~~-~~~~s~~~~~~~~l~~------------- 221 (763)
++.+++++ .||.|++|+...... ..+. ..... .-..+++.++.+++|+
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~ 344 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF 344 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC
Confidence 76777777 588999998654221 1111 11000 0112345677788886
Q ss_pred cceeeEEecCCCCEEEEEeec
Q 004298 222 ASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 222 ~~I~~v~~SpDg~~Llv~~~d 242 (763)
..+.+++|+|||+.+++++.+
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECC
T ss_pred CCCCeEEEcCCCCEEEEEecC
Confidence 347889999999999988764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=147.18 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=132.9
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l 99 (763)
.|.+++|+|+++.++++ +.++.|.+|++ +++.+..+.++..+.+++|+|||+.+ ++++.|+.|++||+.+++.+..+
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 59999999999987655 46799999999 56666777777889999999999987 67778999999999999999888
Q ss_pred cccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 KSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
..| ..+.++.|+|+++.+ ++++ .++.+++||...... ...... ..... ...++++++.++
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~--~~~~~~--------~~~~~--~~~~~~~g~~l~ 215 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANF------DSMSISVIDTVTNSV--IDTVKV--------EAAPS--GIAVNPEGTKAY 215 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEET------TTTEEEEEETTTTEE--EEEEEC--------SSEEE--EEEECTTSSEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeC------CCCEEEEEECCCCeE--EEEEec--------CCCcc--ceEECCCCCEEE
Confidence 765 567999999999876 5665 689999999875310 000000 01111 223456677777
Q ss_pred EEc---CCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 179 SGD---KDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 179 sgs---~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+++ .++.|++|+..... +..++.+ ..+.+++|+|||+++++++.
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKITARIPVG-------------------PDPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEECC-------------------SSEEEEEECTTSSEEEEEET
T ss_pred EEecCcCCCcEEEEECCCCeEEEEEecC-------------------CCccEEEEccCCCEEEEEcC
Confidence 776 69999999976432 2222211 13567899999999987754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=152.38 Aligned_cols=167 Identities=10% Similarity=0.058 Sum_probs=113.3
Q ss_pred CCCeEEEEEcC--------CCCEEEEEeCCCeEEEEEc-cCceEEE-ecCCCcEEEEEEccCCC-EEEEEEcCCcEEEEE
Q 004298 21 ASQIKIAEWNP--------EKDLLAMATEDSKILLHRF-NWQRLWT-ISPGKSVTSLCWRPDGK-AIAVGLEDGTITLHD 89 (763)
Q Consensus 21 ~~~V~~l~~sP--------~~~lLA~~s~Dg~V~v~~l-~~~~v~~-~~~~~~V~~l~wspDG~-~Lasg~~Dg~V~lwd 89 (763)
.+.|.+++|+| ++++||+++.|++|+||++ +++++.. ..+...|.+++|+|++. +|++|+.||+|++||
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd 215 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence 45699999998 7899999999999999999 4555544 45778999999999875 899999999999999
Q ss_pred ccCCeEEEEe-------------------------cccCCceeEEEee-cCCCceeccCCCCCcccCCceeecCCCCC--
Q 004298 90 VENGKLLRSL-------------------------KSHTVAVVCLNWE-EDAQPSKNDFGNIPTYEDRTSRFFPPAPR-- 141 (763)
Q Consensus 90 ve~g~~~~~l-------------------------~~h~~~V~~l~ws-~~~~~l~s~s~~~~~~~d~~i~~wd~~~~-- 141 (763)
+++++..... .+|...|.++.|. +++..+++++ .|+++++||+...
T Consensus 216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s------~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC------KSGAWLRWNLFANND 289 (393)
T ss_dssp TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC------TTSEEEEEEC-----
T ss_pred CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe------CCCCEEEEECccCCC
Confidence 9987654322 2567789999987 7899999998 8999999997642
Q ss_pred CCCCCCcccCCc--ccccC-----CcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 142 IPQMPGLVSGDT--GFTDD-----SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 142 ~~~l~~~~s~~~--~~~~~-----~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
...+..+..... .+... .........+....+..++++|+.||+|++|+...
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC
T ss_pred CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC
Confidence 111111110000 00000 00001112222334556788999999999998654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=142.90 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=125.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-----------------------------------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS----------------------------------------- 59 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~----------------------------------------- 59 (763)
..|.+++|+|+++++|+|+.||+|++|++ +++.+..+.
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 45999999999999999999999999998 444333221
Q ss_pred -CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE----EEEecccCCceeEEEeecCCCce---eccCCCCCcccCC
Q 004298 60 -PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL----LRSLKSHTVAVVCLNWEEDAQPS---KNDFGNIPTYEDR 131 (763)
Q Consensus 60 -~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~----~~~l~~h~~~V~~l~ws~~~~~l---~s~s~~~~~~~d~ 131 (763)
|...+.++.|+++|++|++|+.||.|++||+++++. ......|.+.|.++.|+|++..+ ++++ .++
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~ 221 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT------SDR 221 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT------TTC
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC------CCC
Confidence 234578899999999999999999999999987653 34455678899999999987643 3455 789
Q ss_pred ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccc-----
Q 004298 132 TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFH----- 205 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~----- 205 (763)
++++|+........ .. .+ ...+....+....+.-++++|+.||+|++|+.... .+..+.-|...
T Consensus 222 ~i~lwd~~~~~~~~--~~-~~-------~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 222 HIRIWNVCSGACLS--AV-DA-------HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp EEEEEETTTCCEEE--EE-EC-------SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEEecccccccc--cc-cc-------eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 99999976531110 00 00 11122233333334334445668999999987654 33333322211
Q ss_pred -----cccccCCCCCceeeec
Q 004298 206 -----VAIPNADEQGTCRLLN 221 (763)
Q Consensus 206 -----~~~~s~~~~~~~~l~~ 221 (763)
..+.+++.|+++++|+
T Consensus 292 ~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 292 MSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp ECTTSSCEEEEETTTEEEEEC
T ss_pred EcCCCCEEEEEecCCeEEEEE
Confidence 1234677888888887
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=149.13 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=128.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC---eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEE-EEEcCCc--EEEEEccCCe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS---KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIA-VGLEDGT--ITLHDVENGK 94 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg---~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~La-sg~~Dg~--V~lwdve~g~ 94 (763)
..|.+++|||+|+.||+++.++ .|++|++ +++......+...+.+++|+|||+.|+ +++.||. |++||+.+++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 3499999999999999999875 9999999 455443334667899999999999888 5555655 9999999887
Q ss_pred EEEEecccCCceeEEEeecCCCceeccCCCCCcccCC--ceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR--TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~--~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
. ..+..|...+.++.|+|+|+.+++++. .++ .+.+||....... ....+. ... ....+++
T Consensus 259 ~-~~l~~~~~~~~~~~~spdg~~l~~~s~-----~~g~~~i~~~d~~~~~~~---~l~~~~-------~~~--~~~~~sp 320 (415)
T 2hqs_A 259 I-RQVTDGRSNNTEPTWFPDSQNLAFTSD-----QAGRPQVYKVNINGGAPQ---RITWEG-------SQN--QDADVSS 320 (415)
T ss_dssp E-EECCCCSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTSSCCE---ECCCSS-------SEE--EEEEECT
T ss_pred E-EeCcCCCCcccceEECCCCCEEEEEEC-----CCCCcEEEEEECCCCCEE---EEecCC-------Ccc--cCeEECC
Confidence 6 567788889999999999998877651 244 4555676542111 000010 111 2234567
Q ss_pred CeeEEEEEcCC---CcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 173 RFSILCSGDKD---GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 173 ~~~~L~sgs~D---G~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.|++++.+ +.|++|+...-....+. .. ..+.+++|||||+.+++++.++
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~----------~~---------~~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLS----------ST---------FLDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEEECC----------CS---------SSCEEEEECTTSSEEEEEEEET
T ss_pred CCCEEEEEECcCCceEEEEEECCCCCEEEec----------CC---------CCcCCeEEcCCCCEEEEEEcCC
Confidence 77788877754 57888876543221110 00 1366899999999999887654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-14 Score=149.05 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=115.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEE--ccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCW--RPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~w--spDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+.|.+++|+|++++|++++.||.|++|++ +++.+....|...|++++| +|+|++|++|+.||.|++||+++++.+..
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 34999999999999999999999999999 4555555568899999999 89999999999999999999999887777
Q ss_pred ecccC-----------------------------------------CceeEEEeecCCCc----eeccCCCCCcccCCce
Q 004298 99 LKSHT-----------------------------------------VAVVCLNWEEDAQP----SKNDFGNIPTYEDRTS 133 (763)
Q Consensus 99 l~~h~-----------------------------------------~~V~~l~ws~~~~~----l~s~s~~~~~~~d~~i 133 (763)
+..|. ..+.++.+.++... +++++ .|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~dg~i 240 (368)
T 3mmy_A 167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS------IEGRV 240 (368)
T ss_dssp EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE------TTSEE
T ss_pred EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec------CCCcE
Confidence 65442 22334444444333 56665 78889
Q ss_pred eecCCCCCCC-CCCCcccCCcccc-----cCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce
Q 004298 134 RFFPPAPRIP-QMPGLVSGDTGFT-----DDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 134 ~~wd~~~~~~-~l~~~~s~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
++|+...... .......++.... ......+..+ .+++++++|++|+.||.|++|+....
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI--AFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE--EECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EEEecCCCCccccceeeeeeecccccccccccccceEEE--EEecCCCEEEEEccCCeEEEEECCCC
Confidence 9998775311 1111111111100 0000023333 45567789999999999999997753
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-14 Score=156.22 Aligned_cols=190 Identities=9% Similarity=0.067 Sum_probs=132.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-----------ceEE------EecCCCcEEEEEEccCCCEEE----EEEc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-----------QRLW------TISPGKSVTSLCWRPDGKAIA----VGLE 81 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-----------~~v~------~~~~~~~V~~l~wspDG~~La----sg~~ 81 (763)
.+..++|+|++.++++++.++ +.||+... ..+. .+.++..|.+++|+|||++|| +|+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 488999999999999999888 88887521 1122 233456799999999999999 6778
Q ss_pred CCcEEEEEccCC--------e---EEEEecccCCceeEEEeecC-CCceeccCCCCCcccCCceeecCCCCCCCCCCCcc
Q 004298 82 DGTITLHDVENG--------K---LLRSLKSHTVAVVCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLV 149 (763)
Q Consensus 82 Dg~V~lwdve~g--------~---~~~~l~~h~~~V~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~ 149 (763)
|+.|+|||++++ + .+..+.+|...|.+++|+|+ +..+++++ .|+++++||.+..... ...
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s------~Dg~v~iwD~~~~~~~--~~~ 188 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL------ADGSIAVLQVTETVKV--CAT 188 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE------TTSCEEEEEESSSEEE--EEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE------CCCeEEEEEcCCCcce--eec
Confidence 999999998765 2 24556779999999999998 67888888 8999999998763110 001
Q ss_pred cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe
Q 004298 150 SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL 229 (763)
Q Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~ 229 (763)
.++ ...+..+ ++++++++|++|+.||+|++|+........+..+. .. .... ...|.+++|
T Consensus 189 ~~~-------~~~v~~v--~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~-----~~-~~~~-----~~~v~~v~w 248 (434)
T 2oit_A 189 LPS-------TVAVTSV--CWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP-----FY-ESDH-----PVRVLDVLW 248 (434)
T ss_dssp ECG-------GGCEEEE--EECTTSSCEEEEETTSCEEEECTTCCEEEEECCCT-----TC-CTTS-----CEEEEEEEE
T ss_pred cCC-------CCceeEE--EEcCCCCEEEEEcCCCcEEEEccCCcccccccCCc-----cc-CCCC-----ceeEEEEEE
Confidence 111 1223333 34567889999999999999987632233332111 00 0000 025789999
Q ss_pred cCCCCEEEEEee
Q 004298 230 SKDLFHLTVLCS 241 (763)
Q Consensus 230 SpDg~~Llv~~~ 241 (763)
++++.++++...
T Consensus 249 ~~~~~~l~~~~~ 260 (434)
T 2oit_A 249 IGTYVFAIVYAA 260 (434)
T ss_dssp EETTEEEEEEEE
T ss_pred ecCceEEEEEcc
Confidence 998877766544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=152.72 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCCEEE----EEeCCCeEEEEEcc-C--------ceEEEe---c-CCCcEEEEEEccC-CCEEEEEEc
Q 004298 20 VASQIKIAEWNPEKDLLA----MATEDSKILLHRFN-W--------QRLWTI---S-PGKSVTSLCWRPD-GKAIAVGLE 81 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA----~~s~Dg~V~v~~l~-~--------~~v~~~---~-~~~~V~~l~wspD-G~~Lasg~~ 81 (763)
+++.|.+++|+|++++|| +++.|+.|+||++. + +.+..+ . |+..|.+++|+|+ +++||+|+.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 345699999999999999 67889999999983 2 222222 2 6788999999997 899999999
Q ss_pred CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 82 DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
||+|++||++++..+....+|...|++++|+|+|.++++++ .|+++++||.+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs------~dg~v~iwd~~ 222 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK------QNGTVVQYLPT 222 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE------TTSCEEEECTT
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc------CCCcEEEEccC
Confidence 99999999999987777778889999999999999999998 89999999987
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=143.88 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=138.9
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE--------cCCcEEEEEcc
Q 004298 22 SQIKIAEWNPEKDLLAMA-TEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL--------EDGTITLHDVE 91 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~--------~Dg~V~lwdve 91 (763)
..+.+++|+|+++.++++ +.|+.|.+|++ +++.+..+..+..+.+++|+|||+++++++ .||.|++||+.
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 359999999999988554 47999999999 677777777777899999999999999988 58999999999
Q ss_pred CCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 92 NGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 92 ~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
+++.+..+ .|...+.+++|+|+++.+ ++++ .++.+++||..... ...... . ..... ...+
T Consensus 292 ~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~~~--~~~~~~-~-------~~~~~--~~~~ 352 (433)
T 3bws_A 292 KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKEKK--VQKSIP-V-------FDKPN--TIAL 352 (433)
T ss_dssp TTEEEEEE-EEEECEEEEEECSSTTEEEEEET------TTTEEEEEETTTTE--EEEEEE-C-------SSSEE--EEEE
T ss_pred CCcEEeec-cCCCCcceEEECCCCCEEEEEec------CCCEEEEEECCCCc--EEEEec-C-------CCCCC--eEEE
Confidence 99888776 456689999999999744 5555 79999999987421 000000 0 01111 2334
Q ss_pred CCCeeEEEEEcC---------------CCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCC
Q 004298 171 HQRFSILCSGDK---------------DGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLF 234 (763)
Q Consensus 171 ~~~~~~L~sgs~---------------DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~ 234 (763)
+++++.+++++. ||.|++|+...... ..+.. ...+..++|+|||+
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-------------------GNQPTGLDVSPDNR 413 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-------------------SSSEEEEEECTTSC
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-------------------CCCCceEEEcCCCC
Confidence 566666776665 57999998655322 22210 12467899999999
Q ss_pred EEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 235 HLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 235 ~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
++++++.++ ..++++.++
T Consensus 414 ~l~~~~~~d-----------~~i~v~~~~ 431 (433)
T 3bws_A 414 YLVISDFLD-----------HQIRVYRRD 431 (433)
T ss_dssp EEEEEETTT-----------TEEEEEEET
T ss_pred EEEEEECCC-----------CeEEEEEec
Confidence 998876522 267777654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=128.15 Aligned_cols=184 Identities=10% Similarity=0.079 Sum_probs=120.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEec---CCCcEEEEEEccCCCEEEEEE--cCCcEEEEEc--cCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTIS---PGKSVTSLCWRPDGKAIAVGL--EDGTITLHDV--ENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~---~~~~V~~l~wspDG~~Lasg~--~Dg~V~lwdv--e~g 93 (763)
..|.+++|+|+++++++++ ++.|.+|++.. .....+. +...+.+++|+|||++|++++ .++.+.||.+ .++
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence 3499999999999999887 78999999955 4444433 236789999999999999999 4455666554 445
Q ss_pred eEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
+ ...+..+ ..+.++.|+|+++.++ +++ .++.+++|+......... ....+ ...+..+ .+++
T Consensus 121 ~-~~~~~~~-~~~~~~~~spdg~~l~~~~~------~~~~~~l~~~~~~~~~~~-~~~~~-------~~~~~~~--~~s~ 182 (297)
T 2ojh_A 121 T-PRLMTKN-LPSYWHGWSPDGKSFTYCGI------RDQVFDIYSMDIDSGVET-RLTHG-------EGRNDGP--DYSP 182 (297)
T ss_dssp C-CEECCSS-SSEEEEEECTTSSEEEEEEE------ETTEEEEEEEETTTCCEE-ECCCS-------SSCEEEE--EECT
T ss_pred c-eEEeecC-CCccceEECCCCCEEEEEEC------CCCceEEEEEECCCCcce-EcccC-------CCccccc--eECC
Confidence 4 4445443 4589999999999776 554 678889987542111110 00011 1112223 3456
Q ss_pred CeeEEEEEc-CCCcEEEEEcCce--eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 173 RFSILCSGD-KDGSICFNIFGIF--PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 173 ~~~~L~sgs-~DG~I~lw~~~~~--~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+++.++.++ .++.+++|.++.. ....+. -....+..++|||||+++++++.+
T Consensus 183 dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 183 DGRWIYFNSSRTGQMQIWRVRVDGSSVERIT------------------DSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCEEECC------------------CCSEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCEEEEEecCCCCccEEEECCCCCCcEEEe------------------cCCcccCCeEECCCCCEEEEEEcC
Confidence 666666554 6999999975421 111110 011346789999999999988765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=135.81 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=117.3
Q ss_pred CCEEEEEeCC------CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC---cEEEEEccCCeEEEEeccc
Q 004298 33 KDLLAMATED------SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG---TITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 33 ~~lLA~~s~D------g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg---~V~lwdve~g~~~~~l~~h 102 (763)
+..++.++.+ +.|++|+++++.+..+. |...|.+++|+|||+.|++++.++ .|++||+++++.. .+..|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 6667766654 79999999776655554 677899999999999999999875 9999999998875 56678
Q ss_pred CCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 103 TVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
...+.+++|+|+|+.++ +++.+ .+..+.+||....... ....+.. .. ....++++++.|++++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~---~l~~~~~-------~~--~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIR---QVTDGRS-------NN--TEPTWFPDSQNLAFTS 285 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEE---ECCCCSS-------CE--EEEEECTTSSEEEEEE
T ss_pred CCcccCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEE---eCcCCCC-------cc--cceEECCCCCEEEEEE
Confidence 88999999999999777 55410 2345888887653110 0111111 11 2234557777777766
Q ss_pred C-CCcEEEE--EcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 182 K-DGSICFN--IFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 182 ~-DG~I~lw--~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
. +|...+| +...-....+. . ....+.+++|||||++|+++..+
T Consensus 286 ~~~g~~~i~~~d~~~~~~~~l~----------~--------~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQRIT----------W--------EGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CTTSSCEEEEEETTSSCCEECC----------C--------SSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEe----------c--------CCCcccCeEECCCCCEEEEEECc
Confidence 5 6655555 43321111110 0 01246689999999999988764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=7e-11 Score=125.43 Aligned_cols=190 Identities=8% Similarity=0.014 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEcc-C---ceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC-CeE
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRFN-W---QRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN-GKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~-~---~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~-g~~ 95 (763)
.+..++|+|+++++++++. ++.|.+|+++ + +.+..+.....+.+++|+|||+++++++ .++.|++||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 4788999999998876664 7899999992 2 2344445566789999999999988888 899999999987 655
Q ss_pred EE----Eecc-cCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCC--CcccCC-cccccCCcccccce
Q 004298 96 LR----SLKS-HTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGD-TGFTDDSEDSFREL 166 (763)
Q Consensus 96 ~~----~l~~-h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~-~~~~~~~~~~~~~~ 166 (763)
.. .+.. ....+.++.|+|+++.++ ++. .++.+.+|+.......+. ...... ..+. ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~-- 234 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNIECVQTLDMMPENFS--DTRWAA-- 234 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTSCCEEEEEEECSCTTCC--SCCCEE--
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEecCCCCcEEEEeeccccCcccc--ccCCcc--
Confidence 32 2222 235788999999998654 443 588999998854211110 000000 0000 000111
Q ss_pred ecccCCCeeEEE-EEcCCCcEEEEEcCc----e-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 167 ANSSHQRFSILC-SGDKDGSICFNIFGI----F-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 167 ~~~~~~~~~~L~-sgs~DG~I~lw~~~~----~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
...++++++.|+ ++..++.|.+|+... . .+..+.. ...+..++|+|||+.|+++.
T Consensus 235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-------------------ETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-------------------SSSCCCEEECTTSSEEEEEC
T ss_pred ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-------------------CCccceEEECCCCCEEEEec
Confidence 223456665554 666899999998762 1 1122211 01255789999999999887
Q ss_pred e
Q 004298 241 S 241 (763)
Q Consensus 241 ~ 241 (763)
.
T Consensus 296 ~ 296 (343)
T 1ri6_A 296 Q 296 (343)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.1e-12 Score=128.74 Aligned_cols=192 Identities=9% Similarity=-0.029 Sum_probs=125.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CC--eEEEEEccCceEEEecCCCcEEEEEEccCCCEEE-EEEcCCcEEEEEcc-CCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATE--DS--KILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIA-VGLEDGTITLHDVE-NGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~--Dg--~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~La-sg~~Dg~V~lwdve-~g~~ 95 (763)
..|.+++|+|+++++++++. ++ .|++++..++....+.....+.+++|+|||+.|+ ++..|+.++||++. .+..
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 45788999999999999983 34 4555555555666666666699999999999887 67789999999964 2334
Q ss_pred EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
...+..|...+.++.|+|+++.++.++. .++.+++|+......... ....+ ...+ ....++++++
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~~~i~~~~~~~~~~~-~~~~~-------~~~~--~~~~~s~dg~ 229 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSS-----RTGQMQIWRVRVDGSSVE-RITDS-------AYGD--WFPHPSPSGD 229 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEETTSSCEE-ECCCC-------SEEE--EEEEECTTSS
T ss_pred ceEcccCCCccccceECCCCCEEEEEec-----CCCCccEEEECCCCCCcE-EEecC-------Cccc--CCeEECCCCC
Confidence 4566677889999999999997765431 477888887642111110 00111 1111 1233557777
Q ss_pred EEEEEcCC-----------CcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 ILCSGDKD-----------GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 ~L~sgs~D-----------G~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.|++++.+ +.|++|+........+. . ..-....+..++|||||+++++++.+.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~--~-------------~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF--D-------------LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE--E-------------EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeee--c-------------cCCCCcccccceECCCCCEEEEEEecc
Confidence 78777765 45777775432211110 0 000113467889999999999887654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9e-11 Score=125.43 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCEEEEEe--CCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMAT--EDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s--~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+..++|+|+++.+++++ .++.|.+|+. +++.++.+. ++..+.+++|+|||+++++++.++.|.+||..+++.+..+
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~ 222 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK 222 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence 68899999999877766 4788999999 666777777 6677899999999999999999999999999999998887
Q ss_pred cc----cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 100 KS----HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 100 ~~----h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
.. +...+..++|+|+++.+..++ ..++.+.+||..... ........ .. ....++++++
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~--~~~~~~~~--------~~---~~~~~s~dg~ 284 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITD-----SKAAEVLVVDTRNGN--ILAKVAAP--------ES---LAVLFNPARN 284 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEE-----SSSSEEEEEETTTCC--EEEEEECS--------SC---CCEEEETTTT
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEe-----CCCCEEEEEECCCCc--EEEEEEcC--------CC---ceEEECCCCC
Confidence 64 455688899999998665543 156899999876421 10000000 00 1122345555
Q ss_pred -EEEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 176 -ILCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 176 -~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++++..++.|.+|+...... ..++.. ..+..++|+|||+++++...++
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-------------------THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECC-------------------SEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEECCCCeEEEEECCCCeEEEEEecC-------------------CCCCeEEEcCCCCEEEEEEccc
Confidence 556666799999998764432 222211 1356899999999999988764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.9e-11 Score=124.28 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=122.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC-CeEEEEEcc--Cc---eEEEecCCCcEEEEEEccCCCEEEEEEc-CCcEEEEEcc---C
Q 004298 23 QIKIAEWNPEKDLLAMATED-SKILLHRFN--WQ---RLWTISPGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVE---N 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D-g~V~v~~l~--~~---~v~~~~~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve---~ 92 (763)
.+..++|+|+++++++++.+ +.|.+|+++ .. .+..+..+..+.+++|+|||+++++++. ++.|.+||+. +
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 47889999999988888876 899999995 32 2334444457899999999998877764 8899999994 4
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
++.+..+.. ...+.+++|+|+++.+++++ ..++.+.+|+..... .+...... ............ ..+++
T Consensus 119 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~-----~~~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~~~~~--~~~~p 187 (343)
T 1ri6_A 119 VGVVDVVEG-LDGCHSANISPDNRTLWVPA-----LKQDRICLFTVSDDG-HLVAQDPA--EVTTVEGAGPRH--MVFHP 187 (343)
T ss_dssp EEEEEEECC-CTTBCCCEECTTSSEEEEEE-----GGGTEEEEEEECTTS-CEEEEEEE--EEECSTTCCEEE--EEECT
T ss_pred ccccccccC-CCCceEEEECCCCCEEEEec-----CCCCEEEEEEecCCC-ceeeeccc--ccccCCCCCcce--EEECC
Confidence 445555544 35689999999998766543 257899999976411 00000000 000000011112 23456
Q ss_pred CeeEE-EEEcCCCcEEEEEcCce--e---eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 173 RFSIL-CSGDKDGSICFNIFGIF--P---IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 173 ~~~~L-~sgs~DG~I~lw~~~~~--~---ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+++.+ +++..++.|.+|+++.. . ...+. ..+ . +..+ ...+..++|+|||++++++..
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~--~~~----~-~~~~-----~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD--MMP----E-NFSD-----TRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE--CSC----T-TCCS-----CCCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc--ccC----c-cccc-----cCCccceEECCCCCEEEEEec
Confidence 66644 55568999999987431 1 11111 000 0 0000 013557999999999987764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-10 Score=131.41 Aligned_cols=201 Identities=10% Similarity=0.045 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc---cCceEEEecCCCcEEEEEEcc----CCCEEEEEE-cCCcEEEEEccCCeE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF---NWQRLWTISPGKSVTSLCWRP----DGKAIAVGL-EDGTITLHDVENGKL 95 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~~~~v~~~~~~~~V~~l~wsp----DG~~Lasg~-~Dg~V~lwdve~g~~ 95 (763)
+..++|+|+++++++++.|+.|.+|++ +++.+..+..+..+.+++|+| ||+++++++ .+++|.+||..++++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 889999999999999999999999999 566777788888899999999 999999998 589999999999999
Q ss_pred EEEeccc----------C-CceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccc
Q 004298 96 LRSLKSH----------T-VAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSF 163 (763)
Q Consensus 96 ~~~l~~h----------~-~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~ 163 (763)
+..+..+ . ..+.++.++|++.. +++.. .++++.+||...... +....-....+ .
T Consensus 261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~-l~~~~i~~~~~-------~ 326 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDN-LTVTSIGAAPF-------L 326 (543)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSS-CEEEEEECCSS-------C
T ss_pred ceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCc-ceeEEeccCcC-------c
Confidence 9888652 2 37899999998765 44554 789999999865211 10000000011 1
Q ss_pred cceecccCCCeeEE-EEEcCCCcEEEEEcCcee-eeeeeeccccc-------------c-cccCC-CCCceeeec-----
Q 004298 164 RELANSSHQRFSIL-CSGDKDGSICFNIFGIFP-IGKINIHKFHV-------------A-IPNAD-EQGTCRLLN----- 221 (763)
Q Consensus 164 ~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~-------------~-~~s~~-~~~~~~l~~----- 221 (763)
. ...++++++++ +++..+++|.+|+..... ...+++...+. . ..++. .++++++|+
T Consensus 327 ~--~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~ 404 (543)
T 1nir_A 327 H--DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 404 (543)
T ss_dssp C--CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred c--CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC
Confidence 1 12345666654 455678999999876532 23333321110 0 11221 356777774
Q ss_pred ----------------cceeeEEecCCCCEEEEEe
Q 004298 222 ----------------ASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 222 ----------------~~I~~v~~SpDg~~Llv~~ 240 (763)
+.+..+++||||++|++..
T Consensus 405 ~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 405 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 1245689999999999875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=145.10 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CC-----eEEEEEcc-CceEEEec-CC------------------------CcEEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATE-DS-----KILLHRFN-WQRLWTIS-PG------------------------KSVTSLCW 69 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~-Dg-----~V~v~~l~-~~~v~~~~-~~------------------------~~V~~l~w 69 (763)
..|..++|||+|+.||+++. |+ .|++|++. ++....+. ++ ..|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 45899999999999999998 88 89999994 44333332 11 23789999
Q ss_pred ccCCCEEEEEEcCCcEEEEEccCCe--EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 70 RPDGKAIAVGLEDGTITLHDVENGK--LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 70 spDG~~Lasg~~Dg~V~lwdve~g~--~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+|||++|++++. +.|++||+.+++ ....+..|...+.++.|+|||+.++.++ ++.+.+||...
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-------~~~i~~~d~~~ 181 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-------GRNLWVIDLAS 181 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-------TTEEEEEETTT
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-------CCcEEEEecCC
Confidence 999999999987 999999999873 3456677788999999999999998885 56899998765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.5e-11 Score=135.03 Aligned_cols=199 Identities=10% Similarity=0.039 Sum_probs=138.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc--cCCeEEEEecccCC
Q 004298 28 EWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV--ENGKLLRSLKSHTV 104 (763)
Q Consensus 28 ~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv--e~g~~~~~l~~h~~ 104 (763)
+++|++.++++++.|++|.+|+. +++.+..+..+..+.+++|+|||++|++++.|++|++||+ .+++.+.++.. ..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~ 222 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GI 222 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CC
Confidence 48999999999999999999999 6777777775666999999999999999999999999999 89999998874 56
Q ss_pred ceeEEEeec----CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC----CcccccceecccCCCeeE
Q 004298 105 AVVCLNWEE----DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD----SEDSFRELANSSHQRFSI 176 (763)
Q Consensus 105 ~V~~l~ws~----~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~----~~~~~~~~~~~~~~~~~~ 176 (763)
.+.+++|+| +|+++++++ +.++++.+||..+.. .............. .+.....+.+.. +...+
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~-----~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-~~~~~ 294 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGA-----YWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEF 294 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEE-----EESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEE
T ss_pred CcceEEeCCCcCCCCCEEEEEE-----ccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECC-CCCEE
Confidence 789999999 999988876 358999999875421 00000000000000 000111222222 23467
Q ss_pred EEEEcCCCcEEEEEcCceeee---eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCC
Q 004298 177 LCSGDKDGSICFNIFGIFPIG---KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHG 253 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig---~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~ 253 (763)
+++...+|+|.+|++...... .+.. + ..+..++|+|||+++++++.++
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---------~----------~~~~~~~~spdg~~l~va~~~~---------- 345 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---------A----------PFLHDGGWDSSHRYFMTAANNS---------- 345 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---------C----------SSCCCEEECTTSCEEEEEEGGG----------
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---------C----------cCccCceECCCCCEEEEEecCC----------
Confidence 888889999999987653211 1110 0 1245789999999998886532
Q ss_pred CCcEEEEEeecc
Q 004298 254 MHGLHCLVLDTS 265 (763)
Q Consensus 254 ~~~l~~~~ld~~ 265 (763)
..+.++...+.
T Consensus 346 -~~v~v~D~~tg 356 (543)
T 1nir_A 346 -NKVAVIDSKDR 356 (543)
T ss_dssp -TEEEEEETTTT
T ss_pred -CeEEEEECCCC
Confidence 25666655443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=122.49 Aligned_cols=186 Identities=13% Similarity=-0.021 Sum_probs=125.3
Q ss_pred CeEEEEEcCCCCEEEE-EeCCCeEEEEEc-cCceEEEecCCC----------cEEEEEEccCCCEEEEEE--cCCcEEEE
Q 004298 23 QIKIAEWNPEKDLLAM-ATEDSKILLHRF-NWQRLWTISPGK----------SVTSLCWRPDGKAIAVGL--EDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~~----------~V~~l~wspDG~~Lasg~--~Dg~V~lw 88 (763)
.+..++|+|+++.+++ ...++.|.+|+. +++.++.+..+. .+.+++|+|||+.+++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 3677999999995554 455799999999 666667765321 278999999999888776 48899999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~ 168 (763)
|.++++.+..+..+...+.++.|+|+++.++.++ .++.+.+||....... .....+... .......+
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------~~~~i~~~d~~~~~~~-~~~~~~~~~----~~~~~~~~-- 236 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTN------ADGELITIDTADNKIL-SRKKLLDDG----KEHFFINI-- 236 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEETTTTEEEEEC------TTSEEEEEETTTTEEE-EEEECCCSS----SCCCEEEE--
T ss_pred cCCCCceEEEecCCCCccceEEECCCCCEEEEEc------CCCeEEEEECCCCeEE-EEEEcCCCC----CCcccceE--
Confidence 9999999998876666789999999999888776 6889999987652100 000000000 00111112
Q ss_pred ccCCCeeE-EEEEcCCCcEEEEEcCceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 169 SSHQRFSI-LCSGDKDGSICFNIFGIFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 169 ~~~~~~~~-L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.++++++. ++++..++.|.+|+...... ..+... ....++|+|||++++++..
T Consensus 237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------------~~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 237 SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP--------------------ESLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS--------------------SCCCEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC--------------------CCceEEECCCCCEEEEEEC
Confidence 33455554 44445569999998654322 222210 1135889999999888764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-10 Score=120.91 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=120.4
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEEcc--Cc--eEEEecCC----------CcEEEEEEccCCCEEEEEEcCCcEE
Q 004298 22 SQIKIAEWNPEKDLLAMAT-EDSKILLHRFN--WQ--RLWTISPG----------KSVTSLCWRPDGKAIAVGLEDGTIT 86 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~--~~--~v~~~~~~----------~~V~~l~wspDG~~Lasg~~Dg~V~ 86 (763)
..+..++|+|+++++++++ .++.|.+|+++ +. .+..+... ..+.+++|+|||++++++..++.|+
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 3477899999999888887 67999999984 22 23333221 2488999999999666666789999
Q ss_pred EEEcc-CCeEEE--Eeccc-CCceeEEEeecCCCceec-cCCCCCcccCCceeecCCCCCCCCCC--CcccCCc-ccccC
Q 004298 87 LHDVE-NGKLLR--SLKSH-TVAVVCLNWEEDAQPSKN-DFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDT-GFTDD 158 (763)
Q Consensus 87 lwdve-~g~~~~--~l~~h-~~~V~~l~ws~~~~~l~s-~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~-~~~~~ 158 (763)
+|++. +|+... .+..+ ...+..++|+|+|++++. +. .++.+.+|+.......+. ....... .+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-- 237 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE------LSSQIASLKYDTQTGAFTQLGIVKTIPADYT-- 237 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET------TTTEEEEEEEETTTTEEEEEEEEESSCTTCC--
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC------CCCEEEEEEecCCCCceEEeeeeeecCCCCC--
Confidence 99998 565432 22222 236788999999996554 33 578889997653111100 0000000 000
Q ss_pred CcccccceecccCCCeeEE-EEEcCCCcEEEEEcCce----eeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 159 SEDSFRELANSSHQRFSIL-CSGDKDGSICFNIFGIF----PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~----~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
..... ....++++++.| +++..++.|.+|+...- .+..++. . ...+..++|||||
T Consensus 238 ~~~~~--~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---------~---------~~~~~~~~~spdg 297 (347)
T 3hfq_A 238 AHNGA--AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST---------E---------GDFPRDFDLDPTE 297 (347)
T ss_dssp SCCEE--EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC---------S---------SSCCCEEEECTTS
T ss_pred CCCcc--eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec---------C---------CCCcCeEEECCCC
Confidence 00111 123355777755 66667899999986521 1111110 0 0125679999999
Q ss_pred CEEEEEeec
Q 004298 234 FHLTVLCSG 242 (763)
Q Consensus 234 ~~Llv~~~d 242 (763)
++|+++..+
T Consensus 298 ~~l~v~~~~ 306 (347)
T 3hfq_A 298 AFVVVVNQN 306 (347)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEEcC
Confidence 999988764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=122.88 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEEccCce---EEEe-cCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEcc-CCe-
Q 004298 24 IKIAEWNPEKDLLAMATE--DSKILLHRFNWQR---LWTI-SPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVE-NGK- 94 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~--Dg~V~v~~l~~~~---v~~~-~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve-~g~- 94 (763)
+..++|+|++++++++.. ++.|.+|++.... +..+ .++..+..++|+|||++|++++ .++.|.+|++. +|.
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 567999999995444432 6899999994433 3332 2567788999999999998888 78999999996 333
Q ss_pred -EEEEecc---------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 95 -LLRSLKS---------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 95 -~~~~l~~---------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
.+..+.. +...+.+++|+|+++.+++.. .++.+.+|+.... ..+... ..+.........
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~------~~~~v~~~~~~~~-g~~~~~----~~~~~~~g~~p~ 190 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL------GSDKVYVYNVSDA-GQLSEQ----SVLTMEAGFGPR 190 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET------TTTEEEEEEECTT-SCEEEE----EEEECCTTCCEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC------CCCEEEEEEECCC-CcEEEe----eeEEcCCCCCCc
Confidence 3333322 112488999999999655554 6788999987631 111000 000000000111
Q ss_pred ceecccCCCee-EEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 165 ELANSSHQRFS-ILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 165 ~~~~~~~~~~~-~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
...++++++ +++++..++.|.+|+++.. .+.+.......... .+..+ ...+..++|||||++|+++...
T Consensus 191 --~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~-~~~~~-----~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 191 --HLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIP-ADYTA-----HNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp --EEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSC-TTCCS-----CCEEEEEEECTTSCEEEEEEET
T ss_pred --eEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecC-CCCCC-----CCcceeEEECCCCCEEEEEeCC
Confidence 223556776 4555678899999986531 01110000000000 00000 0236689999999999887653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=121.29 Aligned_cols=185 Identities=9% Similarity=-0.033 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCEEEEEeC-CCeEEEEEc-cCce-EEEecCCCcEEE-EEEccCCCEEEEEEcCC---cEEEEEccCCeEE
Q 004298 24 IKIAEWNPEKDLLAMATE-DSKILLHRF-NWQR-LWTISPGKSVTS-LCWRPDGKAIAVGLEDG---TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~-Dg~V~v~~l-~~~~-v~~~~~~~~V~~-l~wspDG~~Lasg~~Dg---~V~lwdve~g~~~ 96 (763)
+ .++|+|+++.+++++. ++.|.+|++ +++. ...+..+..... ++|+|||++++++..++ .|.+||+++++.+
T Consensus 43 ~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 43 V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 5 8999999996666555 889999999 4544 555554444555 99999999999666553 8999999999998
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCc-eeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT-SRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~-i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
..+.. .....+++|+|+|+.++.++ ..++. +.+|+...... +... . ..... ..... ....++++++
T Consensus 122 ~~~~~-~~~~~~~~~spdg~~l~~~~-----~~~~~~i~~~~~~~~g~-~~~~-~-~~~~~--~~~~~--~~~~~spdg~ 188 (331)
T 3u4y_A 122 STIPI-PYDAVGIAISPNGNGLILID-----RSSANTVRRFKIDADGV-LFDT-G-QEFIS--GGTRP--FNITFTPDGN 188 (331)
T ss_dssp EEEEC-CTTEEEEEECTTSSCEEEEE-----ETTTTEEEEEEECTTCC-EEEE-E-EEEEC--SSSSE--EEEEECTTSS
T ss_pred EEEEC-CCCccceEECCCCCEEEEEe-----cCCCceEEEEEECCCCc-Eeec-C-Ccccc--CCCCc--cceEECCCCC
Confidence 88765 45579999999998655443 14567 99998764211 0000 0 00000 00111 2233456666
Q ss_pred -EEEEEcCCCcEEEEEcCcee----eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 176 -ILCSGDKDGSICFNIFGIFP----IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 176 -~L~sgs~DG~I~lw~~~~~~----ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+++++..++.|++|+..... +..++. ...+..++|||||++++++..
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPENITLLNAVGT-------------------NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTSCEEEEEEEC-------------------SSCCCCEEECTTSSEEEEECS
T ss_pred EEEEEeCCCCeEEEEECCCCcccceeeeccC-------------------CCCCceEEECCCCCEEEEEEc
Confidence 55666679999999865432 222211 023557899999999988764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-10 Score=119.12 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCC------cEEEEEEccCCCEEEEEE------------cCC
Q 004298 24 IKIAEWNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGK------SVTSLCWRPDGKAIAVGL------------EDG 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~------~V~~l~wspDG~~Lasg~------------~Dg 83 (763)
+..++|+|+++.++ ++..++.|.+|++ +++.+..+..+. .+.+++|+|||++++++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 67899999997664 5556789999999 667676665433 677899999999999886 579
Q ss_pred cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 84 TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.|.+||+.+++.+..+.. ...+.++.|+|+++.++.++ +.+.+||..
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~ 162 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG--------RDLHVMDPE 162 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES--------SSEEEEETT
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC--------CeEEEEECC
Confidence 999999999998888765 45788999999999777663 456666654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.9e-11 Score=140.02 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
|..++|||||++|++++. +.|++|++.+. .+..+. ++..+.+++|+|||++||+++ ++.|++||+.+++.....
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 788999999999999886 99999999655 444443 557899999999999999987 468999999988876655
Q ss_pred cccCCc----------------eeEEEeecCCCceeccC
Q 004298 100 KSHTVA----------------VVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 100 ~~h~~~----------------V~~l~ws~~~~~l~s~s 122 (763)
..+... +.++.|+|||+.+++++
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 444332 47899999999888775
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-11 Score=138.43 Aligned_cols=195 Identities=12% Similarity=0.150 Sum_probs=124.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-----ceEEEe-cCC-Cc--------------EEEEEEccCCCEEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNW-----QRLWTI-SPG-KS--------------VTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-----~~v~~~-~~~-~~--------------V~~l~wspDG~~Lasg~ 80 (763)
..+..++|||+|+.||++ .++.|++|++.+ .....+ ..+ .. +.+++|+|||++|++++
T Consensus 121 ~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence 347789999999999985 679999999954 433333 222 22 48999999999999998
Q ss_pred ---------------------------------cCCcEEEEEccCCeEEEEec--ccCCceeEEEeecCCCceeccCCCC
Q 004298 81 ---------------------------------EDGTITLHDVENGKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFGNI 125 (763)
Q Consensus 81 ---------------------------------~Dg~V~lwdve~g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~ 125 (763)
.++.|++||+.+++...... .|...+.++.|+|||+.+++++.+.
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 45679999999988765442 4667899999999999887765100
Q ss_pred CcccCCceeecCCCCC-CC-CCCCcccCCcccccCCcccccceecccCC--CeeEEEEEcCCCcEEEEEcCceeeeeeee
Q 004298 126 PTYEDRTSRFFPPAPR-IP-QMPGLVSGDTGFTDDSEDSFRELANSSHQ--RFSILCSGDKDGSICFNIFGIFPIGKINI 201 (763)
Q Consensus 126 ~~~~d~~i~~wd~~~~-~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~L~sgs~DG~I~lw~~~~~~ig~~~i 201 (763)
......+.+||.... .. .+.. ....... .....+ .+++ +++++++++.||.+++|.++.- -+...
T Consensus 280 -~~~~~~v~~~d~~~g~~~~~~~~--~~~~~~~----~~~~~~--~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~- 348 (706)
T 2z3z_A 280 -AQNECKVNAYDAETGRFVRTLFV--ETDKHYV----EPLHPL--TFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIR- 348 (706)
T ss_dssp -TSCEEEEEEEETTTCCEEEEEEE--EECSSCC----CCCSCC--EECTTCSSEEEEEECTTSSCEEEEEETT-SCEEE-
T ss_pred -CCCeeEEEEEECCCCceeeEEEE--ccCCCeE----CccCCc--eeecCCCCEEEEEEccCCccEEEEEECC-CCEEE-
Confidence 001237888987652 10 0000 0000000 001112 3445 7789999999999999986521 01110
Q ss_pred cccccccccCCCCCceeeeccceee-EEecCCCCEEEEEeec
Q 004298 202 HKFHVAIPNADEQGTCRLLNASIYK-VALSKDLFHLTVLCSG 242 (763)
Q Consensus 202 ~~~~~~~~s~~~~~~~~l~~~~I~~-v~~SpDg~~Llv~~~d 242 (763)
..+.+ ...+.. ++|||||+.+++.+.+
T Consensus 349 ------~l~~~--------~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 349 ------QVTKG--------EWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp ------ECCCS--------SSCEEEEEEECTTSSEEEEEESS
T ss_pred ------ecCCC--------CeEEEeeeEEcCCCCEEEEEecC
Confidence 00111 112444 7899999999888765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.6e-10 Score=116.60 Aligned_cols=207 Identities=8% Similarity=0.026 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCEEEEEeCCC---eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE-EcCCc-EEEEEccCCeEE-
Q 004298 24 IKIAEWNPEKDLLAMATEDS---KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG-LEDGT-ITLHDVENGKLL- 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg---~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg-~~Dg~-V~lwdve~g~~~- 96 (763)
+.+++|+|++++++++..++ .|.+|++ +++.+..+..+..+.+++|+|||++++++ ..++. |.+|++.....+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 33499999999998555443 8999999 56666667777788999999999866555 56688 999998753322
Q ss_pred ---EEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccC
Q 004298 97 ---RSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 97 ---~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
.....+...+.++.|+|+++.+ +++. .++.+.+||...... ......... ... ....++
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~d~~~~~~~~~~~~~~~~--------~~~--~~~~~s 229 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANL------IGNSIGILETQNPENITLLNAVGTN--------NLP--GTIVVS 229 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEET------TTTEEEEEECSSTTSCEEEEEEECS--------SCC--CCEEEC
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeC------CCCeEEEEECCCCcccceeeeccCC--------CCC--ceEEEC
Confidence 1111334568999999999855 4443 588999999764211 000000100 111 122345
Q ss_pred CCeeEEE-EEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccC
Q 004298 172 QRFSILC-SGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELG 250 (763)
Q Consensus 172 ~~~~~L~-sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~ 250 (763)
++++.++ +...++.|.+|+........+.... .... .++. +......++|||||++|++++.++
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~---~~~~---~~~~~~~~~~spdg~~l~v~~~~~------- 294 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG--HGLL---IDPR---PLFGANQMALNKTETKLFISANIS------- 294 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE--CCCC---CCCG---GGTTCCCEEECTTSSEEEEEETTT-------
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCceeeecccc--cccc---cCCC---CcccccceEECCCCCEEEEecCCC-------
Confidence 6777554 4456788999986653332111000 0000 0000 001124589999999998887643
Q ss_pred CCCCCcEEEEEeecc
Q 004298 251 GHGMHGLHCLVLDTS 265 (763)
Q Consensus 251 ~~~~~~l~~~~ld~~ 265 (763)
+.+.++.++..
T Consensus 295 ----~~v~v~d~~~~ 305 (331)
T 3u4y_A 295 ----RELKVFTISGK 305 (331)
T ss_dssp ----TEEEEEETTSC
T ss_pred ----CcEEEEEecCC
Confidence 25666665543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=142.30 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC----cEEEEEEccCCCEEEEEEcC---------CcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK----SVTSLCWRPDGKAIAVGLED---------GTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~----~V~~l~wspDG~~Lasg~~D---------g~V~l 87 (763)
..+..++|+|+|+++++ +.||+|++|++ +++....+.+.. .|.+++|||||++|++++.+ +.+++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678999999998876 78999999999 555544444322 48999999999999999875 77889
Q ss_pred EEccCCeEEEEec---ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
||+++++. ..+. .|...+.+++|+|||+.++.++ ++.+.+|+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~ 143 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-------ENNIYYCAHVG 143 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-------TTEEEEESSSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEE-------CCeEEEEECCC
Confidence 99998876 3443 3444589999999999999886 47899999865
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-10 Score=133.36 Aligned_cols=99 Identities=12% Similarity=0.203 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------CeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATED---------SKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---------g~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.|..++|||||++||+++.+ +.|++|++.+.....+. +...+.+++|||||+.||+++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 48999999999999999875 78889999655544443 2234889999999999999986 7999999
Q ss_pred ccCCeEEEEecccCCce------------------eEEEeecCCCceeccC
Q 004298 90 VENGKLLRSLKSHTVAV------------------VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V------------------~~l~ws~~~~~l~s~s 122 (763)
+.+++.......+...+ .++.|+|||+.+++++
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 99988776655443333 7899999999888765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=133.42 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=85.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe-cCCCcEEEEEEccCCCEEEEEEcCC----------cEEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDG----------TITLHD 89 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg----------~V~lwd 89 (763)
..+..++|||+|+.||+++.++.|++|++. ++..... .+...+.+++|+|||++|++++.++ .|++||
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 458999999999999999999999999994 4444344 4667789999999999999988654 899999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+++ +..+..|...+.++.|+|+|+.+++++
T Consensus 459 ~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 459 MEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp TTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred CCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 99888 677888888899999999999888776
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.8e-10 Score=131.23 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEEccCceEEEec----CCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMAT---------------------------------EDSKILLHRFNWQRLWTIS----PGKSVTS 66 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s---------------------------------~Dg~V~v~~l~~~~v~~~~----~~~~V~~ 66 (763)
+.+++|||+|+.||+++ .+..|++|++.+.....+. +...+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 57899999999999987 4467999999655544433 4467999
Q ss_pred EEEccCCCEEEEEEcCC-----cEEEEEccCCeEEEEec-c-cCC---ceeEEEeec--CCCceeccCCCCCcccCCcee
Q 004298 67 LCWRPDGKAIAVGLEDG-----TITLHDVENGKLLRSLK-S-HTV---AVVCLNWEE--DAQPSKNDFGNIPTYEDRTSR 134 (763)
Q Consensus 67 l~wspDG~~Lasg~~Dg-----~V~lwdve~g~~~~~l~-~-h~~---~V~~l~ws~--~~~~l~s~s~~~~~~~d~~i~ 134 (763)
++|+|||+.|++++.|+ .|++||+.+|+....+. . +.. .+.++.|+| +|+++++++ .++.++
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~------~~g~~~ 336 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR------RDGWNH 336 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC------TTSSCE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc------cCCccE
Confidence 99999999999988776 89999999984443332 2 222 347789999 999888876 678888
Q ss_pred ecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE-EEEcCCC--cEEEEEcCceeeeeeeecccccccccC
Q 004298 135 FFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL-CSGDKDG--SICFNIFGIFPIGKINIHKFHVAIPNA 211 (763)
Q Consensus 135 ~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L-~sgs~DG--~I~lw~~~~~~ig~~~i~~~~~~~~s~ 211 (763)
+|.......... ....+. ..+.. ...++++++.| ++++.++ .+++|.++.-. +... . .+
T Consensus 337 l~~~~~~~~~~~-~l~~~~-------~~v~~-~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~~~--~-----l~- 398 (706)
T 2z3z_A 337 LYLYDTTGRLIR-QVTKGE-------WEVTN-FAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GKTK--D-----LT- 398 (706)
T ss_dssp EEEEETTSCEEE-ECCCSS-------SCEEE-EEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CCCE--E-----SC-
T ss_pred EEEEECCCCEEE-ecCCCC-------eEEEe-eeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CCce--e-----cc-
Confidence 886542111000 000110 11111 02344555544 4555555 35555432210 1110 0 00
Q ss_pred CCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEEEeecc
Q 004298 212 DEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDTS 265 (763)
Q Consensus 212 ~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~~ 265 (763)
....+.+++|||||+++++.+.+. .....++++.++..
T Consensus 399 --------~~~~~~~~~~spdg~~l~~~~~~~--------~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 399 --------PESGMHRTQLSPDGSAIIDIFQSP--------TVPRKVTVTNIGKG 436 (706)
T ss_dssp --------CSSSEEEEEECTTSSEEEEEEECS--------SCSCEEEEEESSSC
T ss_pred --------CCCceEEEEECCCCCEEEEEecCC--------CCCcEEEEEECCCC
Confidence 012367899999999998887643 12235777766554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-10 Score=129.68 Aligned_cols=178 Identities=11% Similarity=-0.027 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEKDLL-AMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~~lL-A~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~~~~~ 98 (763)
+...+|+|+++.+ ++++.++.+.+|++.+.+...+..... .+++|+|||++||+++.+ +.|++||+.+|+.. .
T Consensus 112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~ 189 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-V 189 (582)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-E
T ss_pred ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-E
Confidence 5577999998643 333444555699996555444432222 789999999999988877 78999999988765 6
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCC--ceeecCCCCCCCCCCCcccCCcccccCCccccccee------ccc
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR--TSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELA------NSS 170 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~--~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~------~~~ 170 (763)
+..|...+..++|+|||+.++++. .++ .+.+||....... ...++... +..+. ..+
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~------~~~~~~i~~~d~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLE------TAREARLVTVDPRDGSVE---DLELPSKD-------FSSYRPTAITWLGY 253 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEE------CSSCEEEEEECTTTCCEE---ECCCSCSH-------HHHHCCSEEEEEEE
T ss_pred eecCCCccccceECCCCCEEEEcc------CCCeeEEEEEcCCCCcEE---EccCCCcC-------hhhhhhccccceeE
Confidence 778888999999999999998655 566 7889998753221 11111111 11111 114
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
++++.++++++.+|++++|.. |+... .. .+.+.+++|| ||+.++..+.+
T Consensus 254 spdg~~~~~~~~~g~~~l~~~-----g~~~~------~~-----------~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 254 LPDGRLAVVARREGRSAVFID-----GERVE------AP-----------QGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp CTTSCEEEEEEETTEEEEEET-----TEEEC------CC-----------SSEEEEEEEE-TTEEEEEEEET
T ss_pred cCCCcEEEEEEcCCcEEEEEE-----CCeec------cC-----------CCceEEEEec-CCEEEEEEcCC
Confidence 566689999999999999986 33210 00 1246788999 88877666554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-10 Score=138.08 Aligned_cols=183 Identities=11% Similarity=0.075 Sum_probs=132.4
Q ss_pred CeEEEEEc-CCCCEEEEEeCCCeEEEEEccCceEEEec-CCC-cEEEEEEccCCCEEEEEEcCCcEE-EEEccCCeEEEE
Q 004298 23 QIKIAEWN-PEKDLLAMATEDSKILLHRFNWQRLWTIS-PGK-SVTSLCWRPDGKAIAVGLEDGTIT-LHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~s-P~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~-~V~~l~wspDG~~Lasg~~Dg~V~-lwdve~g~~~~~ 98 (763)
.|..++|| |+|+.+|+++ ++.|.+|+..+.....+. +.. .+.+++|+ ||+.|++++.++.+. +|++.+++.. .
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~ 373 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-K 373 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-E
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-E
Confidence 48899999 9999999888 889999999655555554 455 79999999 999999999988898 9999877654 4
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+..|...+.+++|+|+|+.+++++ .++.+++||...... .....++... +. ...++++++.|+
T Consensus 374 l~~~~~~~~~~~~SpDG~~la~~~------~~~~v~~~d~~tg~~--~~~~~~~~~~-------v~--~~~~SpDG~~la 436 (1045)
T 1k32_A 374 FEENLGNVFAMGVDRNGKFAVVAN------DRFEIMTVDLETGKP--TVIERSREAM-------IT--DFTISDNSRFIA 436 (1045)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCE--EEEEECSSSC-------CC--CEEECTTSCEEE
T ss_pred ecCCccceeeeEECCCCCEEEEEC------CCCeEEEEECCCCce--EEeccCCCCC-------cc--ceEECCCCCeEE
Confidence 447788999999999999999887 788999999865311 1111112111 11 223567888888
Q ss_pred EEcCCC----------cEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 179 SGDKDG----------SICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 179 sgs~DG----------~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++.++ .|++|+........+. .. ...+..++|||||++|++.+.++
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~----------~~--------~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT----------TE--------NSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEEEECS----------CS--------SSBEEEEEECTTSCEEEEEESCC
T ss_pred EEecCccccccCCCCCeEEEEECCCCcEEEee----------CC--------CcccCCceEcCCCCEEEEEeccc
Confidence 877644 8999986543321110 00 12356789999999999887644
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=116.45 Aligned_cols=115 Identities=9% Similarity=-0.007 Sum_probs=87.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC--cEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEecc
Q 004298 26 IAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK--SVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+++++++.++++++.+++|.+|++ +++.+..+..+. .+..++|+|||+.++++ ..++.|.+||+++++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 3568889999999999999999999 566666666544 68899999999976554 4789999999999998887764
Q ss_pred cC------CceeEEEeecCCCceeccCCC------CCcccCCceeecCCCC
Q 004298 102 HT------VAVVCLNWEEDAQPSKNDFGN------IPTYEDRTSRFFPPAP 140 (763)
Q Consensus 102 h~------~~V~~l~ws~~~~~l~s~s~~------~~~~~d~~i~~wd~~~ 140 (763)
+. ..+.++.|+|+|+.+++++.+ .....++.+.+||...
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC
Confidence 32 237899999999988877510 0000138899998754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=132.91 Aligned_cols=96 Identities=11% Similarity=0.258 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCEEEEEeC---------CCeEEEEEccCceE---EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATE---------DSKILLHRFNWQRL---WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~---------Dg~V~v~~l~~~~v---~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
|..++|||||++||+++. ++.|++|++.+... ..+ ...+.+++|||||+.||++. ++.|++|++.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 789999999999999876 78999999966555 333 24688999999999999986 7899999999
Q ss_pred CCeEEEEe-cccCCce-----------------eEEEeecCCCceeccC
Q 004298 92 NGKLLRSL-KSHTVAV-----------------VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 92 ~g~~~~~l-~~h~~~V-----------------~~l~ws~~~~~l~s~s 122 (763)
+|+..... .++...| .++.|+|||+.+++++
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 88775432 2222222 4899999999998875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-10 Score=133.16 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=82.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEecCCC----cEEEEEEccCCCEEEEEEc---------CCcEEEEEc
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTISPGK----SVTSLCWRPDGKAIAVGLE---------DGTITLHDV 90 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~~~~~----~V~~l~wspDG~~Lasg~~---------Dg~V~lwdv 90 (763)
..++|+|++.+++ .+.|+.|++|++.+ +....+.+.. .+.+++|||||++||+++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 3689999996555 45699999999954 4333333222 3889999999999999886 799999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++|+.+.... ....+.+++|+|||+.++.++ ++.+++|+...
T Consensus 98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~ 139 (719)
T 1z68_A 98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPG 139 (719)
T ss_dssp TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-------TTEEEEESSTT
T ss_pred CCCcccccee-cCcccccceECCCCCEEEEEE-------CCeEEEEeCCC
Confidence 9988732111 135689999999999999884 78999999865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=126.07 Aligned_cols=108 Identities=11% Similarity=0.182 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CC-C----cEEEEEEccCCCEEEEEEcC---------CcEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PG-K----SVTSLCWRPDGKAIAVGLED---------GTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~-~----~V~~l~wspDG~~Lasg~~D---------g~V~ 86 (763)
....++|+|++.+++++ |++|++|++ +++....+. +. . ....+.|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999988886 999999999 455433333 21 1 23458999999999999987 5667
Q ss_pred EEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+||+++|+.. .+..|...+...+|+|||+.++.++ ++.+.+|+...
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~ 141 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-------NNDIYVKIEPN 141 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-------TTEEEEESSTT
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-------CCeEEEEECCC
Confidence 9999998864 4667788899999999999999885 78899998765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=108.60 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCEEEEEeCC----CeEEEEEccC--ce---EEEec-CCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLLAMATED----SKILLHRFNW--QR---LWTIS-PGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D----g~V~v~~l~~--~~---v~~~~-~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~ 92 (763)
+..++|+|++++|++++.+ +.|.+|+++. .. +.... ++..+..+++ ||++|++++ .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 5678999999999988875 7999999843 22 33333 4567788888 899888777 688999999975
Q ss_pred CeEEEEe------cc--------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC----C-CCCcccCCc
Q 004298 93 GKLLRSL------KS--------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP----Q-MPGLVSGDT 153 (763)
Q Consensus 93 g~~~~~l------~~--------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~----~-l~~~~s~~~ 153 (763)
...+..+ .+ +...+.+++|+|+|++++.++ ..++.+.+|+...... . +..... ..
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~-----~~~~~v~v~~~~~~~~~~~~~~l~~~~~-~~ 203 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD-----LGTDQIHKFNINPNANADNKEKFLTKGT-PE 203 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEECTTCCTTTCCCCEEEEE-EE
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe-----CCCCEEEEEEEcCCCCcccccceeeccc-cc
Confidence 4322111 11 123458899999998665443 1578899997654221 1 100000 00
Q ss_pred ccccCCcccccceecccCCCeeEEEEEc-CCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEecC
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
.......... ....++++++.+++++ .++.|.+|++..-....+. +... .... .....++|||
T Consensus 204 ~~~~~~~~~~--~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~-----~~~~--------~~~~~i~~sp 268 (361)
T 3scy_A 204 AFKVAPGSGP--RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD-----TVNA--------QGSGDIHLSP 268 (361)
T ss_dssp EEECCTTCCE--EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC-----SSCC--------CCEEEEEECT
T ss_pred ceecCCCCCC--eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC-----CCCC--------CCcccEEECC
Confidence 0000001111 1234567777665555 7999999986532111111 0000 0000 1245899999
Q ss_pred CCCEEEEEeec
Q 004298 232 DLFHLTVLCSG 242 (763)
Q Consensus 232 Dg~~Llv~~~d 242 (763)
||++|+++..+
T Consensus 269 dg~~l~v~~~~ 279 (361)
T 3scy_A 269 DGKYLYASNRL 279 (361)
T ss_dssp TSSEEEEEECS
T ss_pred CCCEEEEECCC
Confidence 99999887664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-09 Score=114.23 Aligned_cols=204 Identities=11% Similarity=-0.010 Sum_probs=119.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEEec--CCCcEEEEEEccCCCE--EEEEE-------------cCC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWTIS--PGKSVTSLCWRPDGKA--IAVGL-------------EDG 83 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~~~--~~~~V~~l~wspDG~~--Lasg~-------------~Dg 83 (763)
.+..++|+|+++++++++.+ .|.+|+++ ++...... .+..+.+++|+|||++ ++++. .+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 47789999999999988887 99999984 54332222 2233567999999994 55553 689
Q ss_pred cEEEEEcc-CCeEEEEec----ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 84 TITLHDVE-NGKLLRSLK----SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 84 ~V~lwdve-~g~~~~~l~----~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
.+.+|++. +|+....+. .+...+.++.|+|+|++++++. ..++.+.+|+.... ..+... ... ... .
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~-----~~~~~v~~~~~~~~-g~~~~~-~~~-~~~-~ 190 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD-----LTANKLWTHRKLAS-GEVELV-GSV-DAP-D 190 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEECTT-SCEEEE-EEE-ECS-S
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc-----CCCCEEEEEEECCC-CCEEEe-eeE-ecC-C
Confidence 99999997 577655443 2456899999999999776553 13678999987620 111000 000 000 0
Q ss_pred CcccccceecccCCCeeEEEEEc-CCCcEEEEEcCceeeeee-----eecccccccccCCCCCceeeeccceeeEE-ecC
Q 004298 159 SEDSFRELANSSHQRFSILCSGD-KDGSICFNIFGIFPIGKI-----NIHKFHVAIPNADEQGTCRLLNASIYKVA-LSK 231 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~~~~ig~~-----~i~~~~~~~~s~~~~~~~~l~~~~I~~v~-~Sp 231 (763)
..... ....++++++.+++++ .+++|.+|.++.- .|.. .+...+... . +....+. -...+..++ |||
T Consensus 191 ~g~~p--~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~-~-g~~~~~~-~~~~~~~i~~~sp 264 (365)
T 1jof_A 191 PGDHP--RWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGI-P-DRDPETG-KGLYRADVCALTF 264 (365)
T ss_dssp TTCCE--EEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTC-C-CBCTTTS-SBSEEEEEEEECT
T ss_pred CCCCC--CEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCc-C-Ccccccc-cccccccEEEECC
Confidence 00111 1223567777776665 5789999976421 1111 011111000 0 0000000 000356899 999
Q ss_pred CCCEEEEEeec
Q 004298 232 DLFHLTVLCSG 242 (763)
Q Consensus 232 Dg~~Llv~~~d 242 (763)
||++|+++..+
T Consensus 265 dG~~l~v~~~~ 275 (365)
T 1jof_A 265 SGKYMFASSRA 275 (365)
T ss_dssp TSSEEEEEEEE
T ss_pred CCCEEEEECCC
Confidence 99999877543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=109.79 Aligned_cols=111 Identities=5% Similarity=-0.061 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCE--EEEEe-------------CCCeEEEEEcc--CceEEEec-----CCCcEEEEEEccCCCEEEEEE-
Q 004298 24 IKIAEWNPEKDL--LAMAT-------------EDSKILLHRFN--WQRLWTIS-----PGKSVTSLCWRPDGKAIAVGL- 80 (763)
Q Consensus 24 V~~l~~sP~~~l--LA~~s-------------~Dg~V~v~~l~--~~~v~~~~-----~~~~V~~l~wspDG~~Lasg~- 80 (763)
+..++|+|+|+. +++++ .++.+.+|+++ ++....+. ++..+.+++|+|||++++++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 455899999984 44443 68999999994 44332222 456899999999999988876
Q ss_pred cCCcEEEEEcc-CCeEE--EEec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 81 EDGTITLHDVE-NGKLL--RSLK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 81 ~Dg~V~lwdve-~g~~~--~~l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.++.|++|++. +|+.. ..+. .|...+.+++|+|+|+++++++ ..++++.+|+..
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-----~~~~~v~v~~~~ 223 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM-----EAGNRICEYVID 223 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEEC
T ss_pred CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEE-----CCCCeEEEEEEe
Confidence 47899999998 78753 3343 2456799999999998876654 146788888654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-08 Score=108.41 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=103.9
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEEcc--C-----c--------eEEEecCCCcEEEEEEccCCCEEEEEE-cCCcE
Q 004298 23 QIKIAEWNPEKDLLAMAT-EDSKILLHRFN--W-----Q--------RLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTI 85 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~--~-----~--------~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V 85 (763)
.+.+++|+|+++++++++ .++.|.+|+++ + + ......++..+.+++|+|||+++++++ .++.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 358899999999666555 57899999984 2 1 123344667789999999999988887 69999
Q ss_pred EEEEccCCeE--EEEec---ccCCceeEEEeecCCCceeccCCCCCccc-CCceeecCCCCCCCCCCCcccCCcccccCC
Q 004298 86 TLHDVENGKL--LRSLK---SHTVAVVCLNWEEDAQPSKNDFGNIPTYE-DRTSRFFPPAPRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 86 ~lwdve~g~~--~~~l~---~h~~~V~~l~ws~~~~~l~s~s~~~~~~~-d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~ 159 (763)
.+|++.+++. +..+. .+...+.+++|+|+|++++.+. .. ++.+.+|+..+....+.... ....
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-----~~~~~~i~v~~~~~~~g~~~~~~----~~~~-- 304 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-----RLKADGVAIFKVDETNGTLTKVG----YQLT-- 304 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-----CSSSCEEEEEEECTTTCCEEEEE----EEEC--
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-----CCCCCEEEEEEEcCCCCcEEEee----EecC--
Confidence 9999998865 23332 2334578999999999875543 13 57899998753211110000 0000
Q ss_pred cccccceecccCCCeeEEEEEc-CCCcEEEEEcC
Q 004298 160 EDSFRELANSSHQRFSILCSGD-KDGSICFNIFG 192 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs-~DG~I~lw~~~ 192 (763)
.... ....+++++++|++++ .++.|.+|.++
T Consensus 305 g~~~--~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 305 GIHP--RNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCC--CEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCC--ceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 0011 1233567777676666 77999998654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=106.80 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT------------EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s------------~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.+..++|+|+++.+++++ .++.|.+|++ +++.+..+..+..+.+++|+|||++|+++ ++.|++||
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence 366799999999988886 5799999999 55666777777778899999999998888 78999999
Q ss_pred ccCCeEEEEecc
Q 004298 90 VENGKLLRSLKS 101 (763)
Q Consensus 90 ve~g~~~~~l~~ 101 (763)
+.+++.+..+..
T Consensus 161 ~~~~~~~~~~~~ 172 (337)
T 1pby_B 161 PEAGTLVEDKPI 172 (337)
T ss_dssp TTTTEEEEEECS
T ss_pred CCCCcEeeeeec
Confidence 999988876654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=118.73 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC----------CeEEEEEccC------ceEEEec--CCCcEEEEEEccCCCEEEEEEcCC-
Q 004298 23 QIKIAEWNPEKDLLAMATED----------SKILLHRFNW------QRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDG- 83 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D----------g~V~v~~l~~------~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg- 83 (763)
.+..++|||+|+.|+.++.+ ..|++|++.+ +....+. +...+.+++|||||++|+.++.++
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 47899999999999998876 5799999966 5555544 345678899999999999888553
Q ss_pred -------cEEEEEcc-CC---eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCC--ceeecCCCCC-CCCCCCcc
Q 004298 84 -------TITLHDVE-NG---KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR--TSRFFPPAPR-IPQMPGLV 149 (763)
Q Consensus 84 -------~V~lwdve-~g---~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~--~i~~wd~~~~-~~~l~~~~ 149 (763)
.|++||++ +| +.......|...+..+.|+|||+++++++ .++ .+..|+.... ...+..
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~------~~~~~~l~~~~~~~~~~~~l~~-- 282 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD------RTGWWNLHRVDPATGAATQLCR-- 282 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC------TTSSCEEEEECTTTCCEEESSC--
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC------CCCCeEEEEEECCCCceeeccc--
Confidence 79999999 57 44444445578899999999999666665 455 4455554321 111111
Q ss_pred cCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 150 SGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 150 s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
.+.... ...-........+.+++.++++++. |.+++|.++
T Consensus 283 -~~~~~~-~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 283 -REEEFA-GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp -CSSBSS-CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred -cccccc-CccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 111100 0000000011233456778999998 999999643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=110.71 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=72.7
Q ss_pred EEEcCCCCEEEEEeC-CC--eEEEEEccCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 27 AEWNPEKDLLAMATE-DS--KILLHRFNWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 27 l~~sP~~~lLA~~s~-Dg--~V~v~~l~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+|||||+.||.++. ++ .|++|++.+.....+.+ +..+.+++|+|||+.|+.+..++.|++||+.+++....+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999887 66 48888886666655543 23344678999999999999999999999999988777666
Q ss_pred cCCceeEEEe--ecCCCcee
Q 004298 102 HTVAVVCLNW--EEDAQPSK 119 (763)
Q Consensus 102 h~~~V~~l~w--s~~~~~l~ 119 (763)
+...+....| +++++.++
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~ 140 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLV 140 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEE
T ss_pred hhhcccccceeECCCCCeec
Confidence 6666655555 78888765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-09 Score=119.49 Aligned_cols=174 Identities=10% Similarity=-0.027 Sum_probs=112.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEccCceEEEecC-C-CcEEEEEEccCCCEEEEEEc---CCcEEEEEccC---C
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRFNWQRLWTISP-G-KSVTSLCWRPDGKAIAVGLE---DGTITLHDVEN---G 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l~~~~v~~~~~-~-~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~---g 93 (763)
+|.+++|+|||+.||.++. ||++.||.+++.....+.. . ..+.+++|+|| +.++++.. +...+||.+.. |
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 3999999999999999887 9999999997777766653 3 47999999999 88877775 55566765543 3
Q ss_pred eEEEEecccCCceeEEEeecCCCc--eeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQP--SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~--l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
... .+..+ ..+...+|+|+++. +++++ ++...+||....... ...... . ....++
T Consensus 102 ~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~-------~~~~~l~d~~~g~~~--~l~~~~---------~---~~~~~s 158 (582)
T 3o4h_A 102 EEQ-RLEAV-KPMRILSGVDTGEAVVFTGAT-------EDRVALYALDGGGLR--ELARLP---------G---FGFVSD 158 (582)
T ss_dssp CCE-ECTTS-CSBEEEEEEECSSCEEEEEEC-------SSCEEEEEEETTEEE--EEEEES---------S---CEEEEE
T ss_pred ccc-cccCC-CCceeeeeCCCCCeEEEEecC-------CCCceEEEccCCcEE--EeecCC---------C---ceEEEC
Confidence 333 44332 34557789998864 44443 344458876542100 000000 0 223456
Q ss_pred CCeeEEEEEcCC----CcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEE
Q 004298 172 QRFSILCSGDKD----GSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTV 238 (763)
Q Consensus 172 ~~~~~L~sgs~D----G~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv 238 (763)
++++.|++++.+ +.|++|+...-....+. -..+.+..++|||||+.|+.
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~------------------~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD------------------SGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCEEEC------------------CSSCEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee------------------cCCCccccceECCCCCEEEE
Confidence 788889877766 67777775432221110 01134678999999999983
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-08 Score=118.86 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=74.7
Q ss_pred EEEEEcCCCCEEEEEeCC---------CeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 25 KIAEWNPEKDLLAMATED---------SKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~D---------g~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
..++|||||+.||.++.+ +.+++|++.+..+..+. +...+...+|||||+.||.+ .|+.|++|++.+|+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 458999999999998876 56679999666665554 45679999999999999998 47899999999887
Q ss_pred EEEE-ecccCCce-----------------eEEEeecCCCceeccC
Q 004298 95 LLRS-LKSHTVAV-----------------VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 95 ~~~~-l~~h~~~V-----------------~~l~ws~~~~~l~s~s 122 (763)
..+. ..++...+ ..+.|+|||+.++..+
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 5542 22332222 3589999999888765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-07 Score=94.51 Aligned_cols=184 Identities=12% Similarity=0.072 Sum_probs=123.2
Q ss_pred CeEEEEE-cCCCCEEEEEeC-CCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEW-NPEKDLLAMATE-DSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~-sP~~~lLA~~s~-Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+..+++ .+++.++++... ++.|.+|+.+++.+..+. +...+.+++++|+|+++++...++.|.+||. +++.+..
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 156 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHK 156 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEE
Confidence 4788999 577777776643 789999998888877765 3357899999999998888788899999995 4777766
Q ss_pred ec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+. .+...+.++++++++...++.. .++.+.+|+...... ........+ ... ...+.++++++
T Consensus 157 ~~~~~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~---~~~~~~g~~-----~~p--~~i~~d~~G~l 220 (286)
T 1q7f_A 157 FGCSKHLEFPNGVVVNDKQEIFISDN------RAHCVKVFNYEGQYL---RQIGGEGIT-----NYP--IGVGINSNGEI 220 (286)
T ss_dssp EECTTTCSSEEEEEECSSSEEEEEEG------GGTEEEEEETTCCEE---EEESCTTTS-----CSE--EEEEECTTCCE
T ss_pred eCCCCccCCcEEEEECCCCCEEEEEC------CCCEEEEEcCCCCEE---EEEccCCcc-----CCC--cEEEECCCCCE
Confidence 64 3445789999999998777765 678899998653210 000000000 011 12334567788
Q ss_pred EEEEcCCC-cEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 177 LCSGDKDG-SICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 177 L~sgs~DG-~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
+++...++ .|.+|+.....+..+..+. . ...+..++++|||+ ++++.
T Consensus 221 ~v~~~~~~~~i~~~~~~g~~~~~~~~~~---------~-------~~~~~~i~~~~~g~-l~vs~ 268 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQDGQLISALESKV---------K-------HAQCFDVALMDDGS-VVLAS 268 (286)
T ss_dssp EEEECSSSCEEEEECTTSCEEEEEEESS---------C-------CSCEEEEEEETTTE-EEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEEEcccC---------C-------CCcceeEEECCCCc-EEEEC
Confidence 88887776 9999975443333332110 0 01255789999986 55554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-07 Score=110.88 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----eEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCc------------
Q 004298 23 QIKIAEWNPEKDLLAMATEDS-----KILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGT------------ 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg-----~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~------------ 84 (763)
.+..++|||||++||.+..++ .|++|++.+...... ..+..+.+++|+|||+.|+.+..++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 378899999999999876543 899999955544332 22233678999999999999998776
Q ss_pred ----EEEEEccCCe----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 85 ----ITLHDVENGK----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 85 ----V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|++|++.+++ .+.....|...+..+.|+|+|++++..+..... .+..+.+||..
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~ 267 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD-PVNRLWYCDLQ 267 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS-SCCEEEEEEGG
T ss_pred CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC-CccEEEEEECc
Confidence 9999998876 333333345568899999999988765411000 14567777764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-08 Score=114.14 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=100.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEEcc--C-ceEEEec------CCCcEEEEEEccCCCEEEEEEcC----------
Q 004298 26 IAEWN--PEKDL-LAMATE-DSKILLHRFN--W-QRLWTIS------PGKSVTSLCWRPDGKAIAVGLED---------- 82 (763)
Q Consensus 26 ~l~~s--P~~~l-LA~~s~-Dg~V~v~~l~--~-~~v~~~~------~~~~V~~l~wspDG~~Lasg~~D---------- 82 (763)
...|+ |||+. ||.++. +..|+++++. + .....+. ++..+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45665 99998 776654 5667777776 4 5555544 34578899999999999999877
Q ss_pred CcEEEEEccC------CeEEEEec-ccCCceeEEEeecCCCceeccCCC--CCcccCCceeecCCCC-C-CCCCCCcccC
Q 004298 83 GTITLHDVEN------GKLLRSLK-SHTVAVVCLNWEEDAQPSKNDFGN--IPTYEDRTSRFFPPAP-R-IPQMPGLVSG 151 (763)
Q Consensus 83 g~V~lwdve~------g~~~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~--~~~~~d~~i~~wd~~~-~-~~~l~~~~s~ 151 (763)
..|++||+.+ ++. ..+. .+...+..+.|+|||+.++..+.+ ...+....+.+||... . .........+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 5899999987 554 4555 556788899999999988766511 0111224677887762 1 0000000001
Q ss_pred CcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 152 DTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
+ .... ....++++++++++++.+|..++|.++
T Consensus 240 ~-------~~~~--~~~~~spdg~l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 240 P-------EEAI--AQAEWAPDGSLIVATDRTGWWNLHRVD 271 (662)
T ss_dssp T-------TBCE--EEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred C-------CceE--cceEECCCCeEEEEECCCCCeEEEEEE
Confidence 0 0111 122345666788888889977777654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.8e-07 Score=92.60 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC-------CCcEEEEEE-ccCCCEEEEEEc-CCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-------GKSVTSLCW-RPDGKAIAVGLE-DGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~-------~~~V~~l~w-spDG~~Lasg~~-Dg~V~lwdve~ 92 (763)
..+..++++|+++++++.+.++.|.+|+.+++.++.+.. ...+.++++ .++|+++++... ++.|++|| .+
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY 108 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence 347899999999998888889999999998887777642 246899999 578877777654 89999999 67
Q ss_pred CeEEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccC
Q 004298 93 GKLLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 93 g~~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
++.+..+.. +...+.+++++++++.+++.. .++.+.+|+....... .......+ ... .....+
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~---~~~~~~~~-----~~p--~~i~~~ 172 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVEC------KVMRVIIFDQNGNVLH---KFGCSKHL-----EFP--NGVVVN 172 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEEE---EEECTTTC-----SSE--EEEEEC
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEEC------CCCEEEEEcCCCCEEE---EeCCCCcc-----CCc--EEEEEC
Confidence 888777743 345789999999998777765 5788999986432100 00000000 001 123345
Q ss_pred CCeeEEEEEcCCCcEEEEEcCc
Q 004298 172 QRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
++++++++.+.++.|++|+...
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~g 194 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYEG 194 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETTC
T ss_pred CCCCEEEEECCCCEEEEEcCCC
Confidence 6778888888899999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-06 Score=90.00 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=108.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEEc-cCceEEEecC--CCcEEEEEEccCCC
Q 004298 22 SQIKIAEWNPEKDLLAMATED------------------------SKILLHRF-NWQRLWTISP--GKSVTSLCWRPDGK 74 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D------------------------g~V~v~~l-~~~~v~~~~~--~~~V~~l~wspDG~ 74 (763)
+.|..++++|+|+++++...+ +.|.+|+. +++.+..... -..+.+++++|+|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 469999999999999888777 47999998 4665544432 24789999999999
Q ss_pred EEEEEEcCCcEEEEEccCCe-EEEEe---------cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC
Q 004298 75 AIAVGLEDGTITLHDVENGK-LLRSL---------KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP 143 (763)
Q Consensus 75 ~Lasg~~Dg~V~lwdve~g~-~~~~l---------~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~ 143 (763)
++++...++.|++||..... .+..+ ..+......++++| ++..+++.+ +.++.++.|+......
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~-----~~~~~I~~~~~~g~~~ 178 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG-----YCNSRIVQFSPSGKFV 178 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC-----SSCCEEEEECTTSCEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC-----CCCCeEEEEcCCCCEE
Confidence 88888889999999975332 45555 23445789999999 787777663 1478899998543211
Q ss_pred C-CCCcccCCcccccCCcccc-cceecccCCC-eeEEEEEcCCCcEEEEEcC
Q 004298 144 Q-MPGLVSGDTGFTDDSEDSF-RELANSSHQR-FSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 144 ~-l~~~~s~~~~~~~~~~~~~-~~~~~~~~~~-~~~L~sgs~DG~I~lw~~~ 192 (763)
. ......+... . ...+ .....+.+++ ++++++...+++|++|+..
T Consensus 179 ~~~~~~g~~~~~-~---~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 179 TQWGEESSGSSP-R---PGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECEECCSSSC-C---TTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeccCCCCCCC-C---CcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 0 0000000000 0 0000 0112234455 7888888899999999875
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=93.22 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe--cCCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI--SPGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~--~~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~~~ 96 (763)
.+..++|+|++++++++..++.|.+|+..+..+..+ .+...+.+++|+|||++++++..+ +.|.+||.++++..
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 478999999999888888899999999955444333 456789999999999988887776 78999999887765
Q ss_pred EEec--ccCCceeEEEeecCCCceeccC
Q 004298 97 RSLK--SHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~--~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..+. .+...+.++.++|++...++..
T Consensus 126 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 153 (333)
T 2dg1_A 126 DIIEDLSTAYCIDDMVFDSKGGFYFTDF 153 (333)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEEC
T ss_pred EEEccCccCCcccceEECCCCCEEEEec
Confidence 4443 2345789999999998777654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=100.32 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=72.9
Q ss_pred CeEEEEEcCCCCEEEEEeCC---C--eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcC--------------
Q 004298 23 QIKIAEWNPEKDLLAMATED---S--KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED-------------- 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g--~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D-------------- 82 (763)
.+..++|||+|+.||.++.+ + .|++|++.+.....+. .+. +.+++|+|||+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 47789999999999987754 3 3777777655444443 233 9999999999999988743
Q ss_pred -------------CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 83 -------------GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 -------------g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
..|++||+.+++.+..+.. . .+..+.|+|+| .+++++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEe
Confidence 5789999998887566655 4 88999999999 666554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-07 Score=100.83 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=123.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc------------CceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN------------WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~------------~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
.+..++++++..++++|+.++ +.+|++. .+..+.+.... |+.++| ||+.|+++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 489999999999999999885 5569972 23334455555 999999 99999999 8899999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.+.........|...|.++.|.+.. ++.+. .||.+.+|+....... .. ...+.++ ++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~------~dG~L~v~dl~~~~~~--~~-----------~~~Vs~v--~W 170 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILN------SVNDLSALDLRTKSTK--QL-----------AQNVTSF--DV 170 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEE------TTSEEEEEETTTCCEE--EE-----------EESEEEE--EE
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEE------CCCCEEEEEccCCccc--cc-----------cCCceEE--EE
Confidence 8766555666777889888877543 55555 6999999998742111 00 1223333 45
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCceee---eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 171 HQRFSILCSGDKDGSICFNIFGIFPI---GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~~~i---g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
++++ ++.|..||++++|..+...+ .+++.. ........ .+..|.+++|.+++.++++-..
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P---p~~~~~~~------~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP---SELEELPV------EEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC---HHHHTSCT------TTSEEEEEEESSSSEEEEEEEC
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccccccceecCC---cccccccC------CCeeEEEEEEecCCeEEEEEcC
Confidence 5777 67899999999997665553 233211 00000000 0135889999999888876554
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.3e-08 Score=103.56 Aligned_cols=81 Identities=11% Similarity=-0.006 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCEEEEEeCC---CeEEEEEccCceEEEecCC-CcE-EEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEKDLLAMATED---SKILLHRFNWQRLWTISPG-KSV-TSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D---g~V~v~~l~~~~v~~~~~~-~~V-~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
+..++|||+|+.||.+... ..|++|++.+.....+..+ ..+ ..+.|+|||+.|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5678999999998877653 3688888866665555432 232 3378999999999999999999999998887655
Q ss_pred ecccCC
Q 004298 99 LKSHTV 104 (763)
Q Consensus 99 l~~h~~ 104 (763)
...+..
T Consensus 118 ~~~~~~ 123 (396)
T 3c5m_A 118 YTVDEE 123 (396)
T ss_dssp EECCTT
T ss_pred Eecccc
Confidence 554443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=91.29 Aligned_cols=199 Identities=12% Similarity=0.034 Sum_probs=121.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-----CCCcEEEEEEccCCCEEEEE----E-----------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-----PGKSVTSLCWRPDGKAIAVG----L----------- 80 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-----~~~~V~~l~wspDG~~Lasg----~----------- 80 (763)
..+..++++|+++++++...++.|.+|+. +++...... ....+..++++|+|+++++. .
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~ 148 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM 148 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence 34889999999999887777789999999 665432222 12346789999999988873 2
Q ss_pred --cCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 81 --EDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 81 --~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
..+.|..++.. ++. ..+..+......++|+|+++.+++.+ .++.+..|+.... ..+. .....+ ..
T Consensus 149 ~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~------~~~~i~~~~~~~~-g~~~---~~~~~~-~~ 215 (296)
T 3e5z_A 149 ELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDT------GDNATHRYCLNAR-GETE---YQGVHF-TV 215 (296)
T ss_dssp CSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEET------TTTEEEEEEECSS-SCEE---EEEEEE-CC
T ss_pred cCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeC------CCCeEEEEEECCC-CcCc---CCCeEe-eC
Confidence 13455555544 554 34445566789999999998776655 5778888886521 1110 000000 00
Q ss_pred CcccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEe-cCCCCEEE
Q 004298 159 SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVAL-SKDLFHLT 237 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~-SpDg~~Ll 237 (763)
.......+ ..+++++++++. ++.|.+|+........+..+ .. +.+++| +||++.|+
T Consensus 216 ~~~~p~~i--~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~------------------~~-~~~~~f~~~d~~~L~ 272 (296)
T 3e5z_A 216 EPGKTDGL--RVDAGGLIWASA--GDGVHVLTPDGDELGRVLTP------------------QT-TSNLCFGGPEGRTLY 272 (296)
T ss_dssp SSSCCCSE--EEBTTSCEEEEE--TTEEEEECTTSCEEEEEECS------------------SC-CCEEEEESTTSCEEE
T ss_pred CCCCCCeE--EECCCCCEEEEc--CCeEEEECCCCCEEEEEECC------------------CC-ceeEEEECCCCCEEE
Confidence 00011112 344667766665 78899887553333333211 12 457888 68999999
Q ss_pred EEeecCccccccCCCCCCcEEEEEeecccccc
Q 004298 238 VLCSGQLSQEELGGHGMHGLHCLVLDTSIFSK 269 (763)
Q Consensus 238 v~~~d~l~~~~~~~~~~~~l~~~~ld~~~l~~ 269 (763)
+++.+ +++.+..++.-+..
T Consensus 273 v~t~~-------------~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 273 MTVST-------------EFWSIETNVRGLEH 291 (296)
T ss_dssp EEETT-------------EEEEEECSCCBCCC
T ss_pred EEcCC-------------eEEEEEcccccccc
Confidence 88653 55666665555443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-07 Score=99.29 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEEccC----ceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEE
Q 004298 24 IKIAEWNPEKDLLAMATED------------SKILLHRFNW----QRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D------------g~V~v~~l~~----~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~l 87 (763)
+..++|+|+++++++++.+ +.|.+|++.. +.+....+...+.+++|+|||+ +++++ +.|++
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~ 170 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYK 170 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEE
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEE
Confidence 6789999999999988865 8999999843 2333444455688999999999 55553 44999
Q ss_pred EEccCCeEEEEecc
Q 004298 88 HDVENGKLLRSLKS 101 (763)
Q Consensus 88 wdve~g~~~~~l~~ 101 (763)
||+.+++.+..+..
T Consensus 171 ~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 171 MDVKTGKYTVALPL 184 (349)
T ss_dssp ECTTTCCEEEEECS
T ss_pred EeCCCCceeccccc
Confidence 99999988877654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.8e-07 Score=95.78 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=108.1
Q ss_pred EEcCCCCEEEEEe----------------------CCCeEEEEEccCceEEEe-cCCCcEEEEEEcc-CCCEEEEEEcC-
Q 004298 28 EWNPEKDLLAMAT----------------------EDSKILLHRFNWQRLWTI-SPGKSVTSLCWRP-DGKAIAVGLED- 82 (763)
Q Consensus 28 ~~sP~~~lLA~~s----------------------~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wsp-DG~~Lasg~~D- 82 (763)
.++|++.+++... .+..|.+|++.......+ .+...+..++|+| ||+.|+....+
T Consensus 131 ~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~ 210 (388)
T 3pe7_A 131 VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGP 210 (388)
T ss_dssp EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC
T ss_pred eECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecC
Confidence 3489999887432 346788999844444333 4556789999999 99999888764
Q ss_pred -----CcEEEEEccCCeEEEEecccC--CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 83 -----GTITLHDVENGKLLRSLKSHT--VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 83 -----g~V~lwdve~g~~~~~l~~h~--~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
..|.++|...++. ..+..+. ..+..+.|+|+|+.++..+... ...+..+.+||.............+....
T Consensus 211 ~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 288 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHL 288 (388)
T ss_dssp TTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEE
T ss_pred CCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceee
Confidence 3778888765544 4444444 3578899999999776543100 00122488899865321110000010000
Q ss_pred ccCCcccccceecccCCCeeEEEEE---------cCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceee
Q 004298 156 TDDSEDSFRELANSSHQRFSILCSG---------DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYK 226 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~sg---------s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~ 226 (763)
. ...... .++++++.|+.. ..++.|++|+...-....+..+.........+. ...+..
T Consensus 289 ~----~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~ 355 (388)
T 3pe7_A 289 M----SNYDGS--LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDR-------QVTHPH 355 (388)
T ss_dssp E----ECTTSS--EEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBS-------STTCCC
T ss_pred e----ecCCCC--eEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccccccc-------ccCCCC
Confidence 0 000001 234555555543 446688888866533322221110000000000 012567
Q ss_pred EEecCCCCEEEEEee
Q 004298 227 VALSKDLFHLTVLCS 241 (763)
Q Consensus 227 v~~SpDg~~Llv~~~ 241 (763)
++|||||+.|++.+.
T Consensus 356 ~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 356 PSFTPDDKQILFTSD 370 (388)
T ss_dssp CEECTTSSEEEEEEC
T ss_pred ccCCCCCCEEEEEec
Confidence 899999999998764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=91.47 Aligned_cols=151 Identities=10% Similarity=0.004 Sum_probs=104.3
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCC--cEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGK--SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVC 108 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~ 108 (763)
+++|++++.++.|.+|+. +|+.+|++..+. .+.++.++|||++++ +.++.|..||. +|+.+.++..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 578889999999999999 999999998543 689999999999888 45788999998 899999988653 57889
Q ss_pred EEeecCCCceeccCCCCCccc-CCceeecCCCCCC-CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcE
Q 004298 109 LNWEEDAQPSKNDFGNIPTYE-DRTSRFFPPAPRI-PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSI 186 (763)
Q Consensus 109 l~ws~~~~~l~s~s~~~~~~~-d~~i~~wd~~~~~-~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I 186 (763)
+.+.++|..+++.+ . ++.+..++...+. .... ...+.... .... ......++++++++.+.++.|
T Consensus 82 ~~~~~dG~~lv~~~------~~~~~v~~vd~~Gk~l~~~~-~~~~~~~~----~~~~--~~v~~~~~G~~lv~~~~~~~v 148 (276)
T 3no2_A 82 ARILPDGNALVAWC------GHPSTILEVNMKGEVLSKTE-FETGIERP----HAQF--RQINKNKKGNYLVPLFATSEV 148 (276)
T ss_dssp EEECTTSCEEEEEE------STTEEEEEECTTSCEEEEEE-ECCSCSSG----GGSC--SCCEECTTSCEEEEETTTTEE
T ss_pred cEECCCCCEEEEec------CCCCEEEEEeCCCCEEEEEe-ccCCCCcc----cccc--cCceECCCCCEEEEecCCCEE
Confidence 99999999888765 3 4455555543321 0000 00000000 0000 011235678899999999999
Q ss_pred EEEEcCceeeeee
Q 004298 187 CFNIFGIFPIGKI 199 (763)
Q Consensus 187 ~lw~~~~~~ig~~ 199 (763)
..|+.....+-++
T Consensus 149 ~~~d~~G~~~w~~ 161 (276)
T 3no2_A 149 REIAPNGQLLNSV 161 (276)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9987543333333
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.7e-07 Score=105.64 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCEEEEE-----eCCCeEEEEEccCceEE-E-ecCCCcEEEEEEccCCCEEEEEEcCCc-----------
Q 004298 23 QIKIAEWNPEKDLLAMA-----TEDSKILLHRFNWQRLW-T-ISPGKSVTSLCWRPDGKAIAVGLEDGT----------- 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-----s~Dg~V~v~~l~~~~v~-~-~~~~~~V~~l~wspDG~~Lasg~~Dg~----------- 84 (763)
.+..++|||||++||.+ +.+..|++|++.+.... . ...+....+++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 48899999999999954 33468999999554432 1 112222268999999999999998776
Q ss_pred --EEEEEccCCe----EEEEecccCCceeEEEeecCCCceeccC
Q 004298 85 --ITLHDVENGK----LLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 85 --V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|++|++.++. .+.....|...+..+.|+|+|++++..+
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence 9999998876 4444444556889999999999887665
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-06 Score=97.15 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=127.2
Q ss_pred CCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc--CCeEEEEecccCCcee
Q 004298 31 PEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE--NGKLLRSLKSHTVAVV 107 (763)
Q Consensus 31 P~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve--~g~~~~~l~~h~~~V~ 107 (763)
|.+.++++...+++|.+++. +++.+..+..+..+..+.|+|||+++.+++.|+.|.+||+. +++.+.++... ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~ 243 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR 243 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence 44456666777899999999 66777888888888999999999999999999999999995 88888888763 4568
Q ss_pred EEEee----cCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC----CcccccceecccCCCeeEEEE
Q 004298 108 CLNWE----EDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD----SEDSFRELANSSHQRFSILCS 179 (763)
Q Consensus 108 ~l~ws----~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~----~~~~~~~~~~~~~~~~~~L~s 179 (763)
.+.|+ |+|+++++++ +.++++.++|..+. ..+. .........+. .+..+..+... +.....++.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n-----~~~~~v~ViD~~t~-~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s-~~~~~~vv~ 315 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGA-----YWPPQYVIMDGETL-EPKK-IQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVN 315 (567)
T ss_dssp EEEECCSTTCTTTEEEEEE-----EETTEEEEEETTTC-CEEE-EEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEE
T ss_pred eeEEccccCCCCCEEEEEE-----ccCCeEEEEECCCC-cEEE-EEeccccccccccccCCCceEEEEEc-CCCCEEEEE
Confidence 99999 6999887775 46788999986541 1110 00000000000 00011112111 122345566
Q ss_pred EcCCCcEEEEEcCcee---eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCc
Q 004298 180 GDKDGSICFNIFGIFP---IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHG 256 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~---ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~ 256 (763)
...+|+|.+.++.... +..+... ...+.+.|+|||+++++++... ..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~-------------------~~~~d~~~~pdgr~~~va~~~s-----------n~ 365 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAE-------------------RFLHDGGLDGSHRYFITAANAR-----------NK 365 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECC-------------------SSEEEEEECTTSCEEEEEEGGG-----------TE
T ss_pred ecCCCeEEEEecCCCccceeeeeecc-------------------ccccCceECCCCCEEEEEeCCC-----------Ce
Confidence 6778888888765421 2222100 1134678999999999987543 25
Q ss_pred EEEEEeecc
Q 004298 257 LHCLVLDTS 265 (763)
Q Consensus 257 l~~~~ld~~ 265 (763)
+.++.+++.
T Consensus 366 V~ViD~~t~ 374 (567)
T 1qks_A 366 LVVIDTKEG 374 (567)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 666655543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-06 Score=90.06 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=76.4
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
...++|+|+++ +++++..++.|..|+..++ ...+ .+...+.+++|+|||+++++...++.|.+||..+|+.......
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 108 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADS 108 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec
Confidence 67899999998 7888888999999999665 4333 3566799999999999888777789999999988876544322
Q ss_pred c----CCceeEEEeecCCCceec
Q 004298 102 H----TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 102 h----~~~V~~l~ws~~~~~l~s 120 (763)
. ...+..++++|+|++.++
T Consensus 109 ~~~~~~~~~~~i~~d~~G~l~vt 131 (296)
T 3e5z_A 109 FEGKKLNSPNDVCLAPDGSLWFS 131 (296)
T ss_dssp ETTEECCCCCCEEECTTSCEEEE
T ss_pred cCCCCCCCCCCEEECCCCCEEEE
Confidence 1 235678999999998776
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.51 E-value=7.2e-07 Score=94.56 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.|.++.|+|+...++..+.++.+..| .++.+..+. +...+.+++|+|||++++++..++.|.+||.++++.......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 37788999998877777778888888 344444443 445679999999999888888999999999998887665545
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccC----CceeecCCCC
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYED----RTSRFFPPAP 140 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d----~~i~~wd~~~ 140 (763)
+...+.++.|+++++.+++.. .+ +.+..|+...
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~------~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYL------GDFKSTGGIFAATENG 121 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEEC------TTSSSCCEEEEECTTS
T ss_pred CCCCcceEEECCCCcEEEEeC------CCCCCCceEEEEeCCC
Confidence 567899999999998777654 33 5788888764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=91.82 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc---cCceEEEecCCCcEEEEEEc----cCCCEEEEEE-cCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF---NWQRLWTISPGKSVTSLCWR----PDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l---~~~~v~~~~~~~~V~~l~ws----pDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
..+..+.++|+|+++.+++.|+.|.+|++ +++.+..+..+.....++|+ |||++++++. .+++|.++|..+.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 34789999999999999999999999999 67788888888888999999 7999888876 5699999999998
Q ss_pred eEEEEec
Q 004298 94 KLLRSLK 100 (763)
Q Consensus 94 ~~~~~l~ 100 (763)
+.+..+.
T Consensus 277 ~~~~~i~ 283 (567)
T 1qks_A 277 EPKKIQS 283 (567)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 8877654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.5e-06 Score=85.06 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=112.9
Q ss_pred cccceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC--CcEEEEEEccCCCEEEEEEc-CC
Q 004298 7 MRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG--KSVTSLCWRPDGKAIAVGLE-DG 83 (763)
Q Consensus 7 ~~~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~--~~V~~l~wspDG~~Lasg~~-Dg 83 (763)
+.+.+.++..... ..+.++.+.|+|++++ +.++.|..|+.+|+.+|.+..+ ..+.++.+.|||+++++.+. ++
T Consensus 24 tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 24 TKEIVWEYPLEKG--WECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TTEEEEEEECCTT--CCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CCeEEEEeCCCcc--CCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 4444544443321 2478899999999988 4578899999999999999854 57889999999999999887 88
Q ss_pred cEEEEEccCCeEEEEecc------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 84 TITLHDVENGKLLRSLKS------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 84 ~V~lwdve~g~~~~~l~~------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
.|..+|. +|+.+.++.. +......+...++|.++++.. .++.+..||...+. +-. .......
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~------~~~~v~~~d~~G~~--~w~-~~~~~~~-- 167 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF------ATSEVREIAPNGQL--LNS-VKLSGTP-- 167 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET------TTTEEEEECTTSCE--EEE-EECSSCC--
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec------CCCEEEEECCCCCE--EEE-EECCCCc--
Confidence 8888885 7888877652 122455667889999888876 68889999876421 000 0000000
Q ss_pred CCcccccceecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 158 DSEDSFRELANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
......++++++++++.+++|..++..
T Consensus 168 --------~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 168 --------FSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp --------CEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred --------cceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 111234677888888888888777644
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.7e-06 Score=85.12 Aligned_cols=196 Identities=6% Similarity=-0.075 Sum_probs=124.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC--CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP--GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~--~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+..++++|+++++++.. ++.|.+|+.++..+..+.. ...+.+++++|+|+++++...++.|.+|+..+........
T Consensus 68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp SCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC
T ss_pred CcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc
Confidence 467899999999776655 8899999998776665542 2578999999999987777788999999866554433222
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEE
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSG 180 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sg 180 (763)
.....+.+++++++++..++.. .++.+..|+.......... .. .. ... .....+++++++++.
T Consensus 147 ~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~~~~~~~~~--~~--~~-----~~p--~~i~~d~~g~l~v~~ 209 (270)
T 1rwi_B 147 TGLNDPDGVAVDNSGNVYVTDT------DNNRVVKLEAESNNQVVLP--FT--DI-----TAP--WGIAVDEAGTVYVTE 209 (270)
T ss_dssp CSCCSCCCEEECTTCCEEEEEG------GGTEEEEECTTTCCEEECC--CS--SC-----CSE--EEEEECTTCCEEEEE
T ss_pred ccCCCceeEEEeCCCCEEEEEC------CCCEEEEEecCCCceEeec--cc--CC-----CCc--eEEEECCCCCEEEEE
Confidence 3334678999999998766654 5678888887642111000 00 00 011 122344566778877
Q ss_pred cCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCCCcEEEE
Q 004298 181 DKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGMHGLHCL 260 (763)
Q Consensus 181 s~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~ 260 (763)
..++.|..|+.......... ..+ ...+..+++++||+ ++++.... ..|..+
T Consensus 210 ~~~~~v~~~~~~~~~~~~~~---------~~~--------~~~p~~i~~~~~g~-l~v~~~~~-----------~~v~~~ 260 (270)
T 1rwi_B 210 HNTNQVVKLLAGSTTSTVLP---------FTG--------LNTPLAVAVDSDRT-VYVADRGN-----------DRVVKL 260 (270)
T ss_dssp TTTSCEEEECTTCSCCEECC---------CCS--------CSCEEEEEECTTCC-EEEEEGGG-----------TEEEEE
T ss_pred CCCCcEEEEcCCCCcceeec---------cCC--------CCCceeEEECCCCC-EEEEECCC-----------CEEEEE
Confidence 77888988875432111110 000 02356899999997 65554322 366666
Q ss_pred Eeecc
Q 004298 261 VLDTS 265 (763)
Q Consensus 261 ~ld~~ 265 (763)
.++.+
T Consensus 261 ~~~~~ 265 (270)
T 1rwi_B 261 TSLEH 265 (270)
T ss_dssp CCCGG
T ss_pred cCCCc
Confidence 65544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-06 Score=89.50 Aligned_cols=160 Identities=10% Similarity=0.032 Sum_probs=108.3
Q ss_pred CeEEEEEcC-CCCEEEEEe-CCCeEEEEEccCceEEEec-CC----------CcEEEEEEccC-CCEEEEEEcCCcEEEE
Q 004298 23 QIKIAEWNP-EKDLLAMAT-EDSKILLHRFNWQRLWTIS-PG----------KSVTSLCWRPD-GKAIAVGLEDGTITLH 88 (763)
Q Consensus 23 ~V~~l~~sP-~~~lLA~~s-~Dg~V~v~~l~~~~v~~~~-~~----------~~V~~l~wspD-G~~Lasg~~Dg~V~lw 88 (763)
....++++| +++++++.+ .++.|.+|+.+++.+..+. .+ ....+++++|+ |+++++...++.|++|
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 478899999 788888886 6899999999998888774 11 23899999998 7777777789999999
Q ss_pred EccCCeEEEEec--ccCCceeEEEeecCCCceeccCC-CCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLK--SHTVAVVCLNWEEDAQPSKNDFG-NIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~--~h~~~V~~l~ws~~~~~l~s~s~-~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
+.++|+.+..+. .+...+.+++|+| +..+.+.+. .+....+..+++|+.... .+.......... ... .
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g--~~~~~~~~~~~~----~~~--p 294 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG--EIIDVFKPVRKH----FDM--P 294 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC--CEEEEECCSSSC----CSS--E
T ss_pred ECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC--eEEEEEcCCCCc----cCC--e
Confidence 999899998884 3556788999999 333322211 112225678888886542 111000000000 000 1
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEc
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIF 191 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~ 191 (763)
...+.+++++++++...+++|++|..
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeC
Confidence 12334567788898889999998863
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-07 Score=96.44 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=72.4
Q ss_pred EEcCCCCEEEEE-----eCCCeEEEEEccCceEE-EecCCCcEEEEEEcc-CCCEEEEEEcC------CcEEEEEccCCe
Q 004298 28 EWNPEKDLLAMA-----TEDSKILLHRFNWQRLW-TISPGKSVTSLCWRP-DGKAIAVGLED------GTITLHDVENGK 94 (763)
Q Consensus 28 ~~sP~~~lLA~~-----s~Dg~V~v~~l~~~~v~-~~~~~~~V~~l~wsp-DG~~Lasg~~D------g~V~lwdve~g~ 94 (763)
.|+|+++.++.+ ..+..|++|++.+.+.. ...+...+..+.|+| ||+.|+..+.+ ..|.+||+.+++
T Consensus 148 ~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 148 DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 567777766654 35668999998544333 334556789999999 89988877654 368888887665
Q ss_pred EEEEeccc--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRSLKSH--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~l~~h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. .+..+ ...+..+.|+|+|+.++..+... ....+.+.+||...
T Consensus 228 ~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 228 VR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFK-GQTDRVIYKANPET 273 (396)
T ss_dssp CE-ESSCCCTTEEEEEEEECTTSSCEEEEEEET-TTCCEEEEEECTTT
T ss_pred ee-EeeccCCCccccceEECCCCCEEEEEecCC-CCccceEEEEECCC
Confidence 43 33333 23588899999999776653100 00114488898764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=86.82 Aligned_cols=75 Identities=15% Similarity=0.056 Sum_probs=61.4
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEEc-cCceEEEec-------CCCcEEEEEEccCCCEEEEEEc--CCcE
Q 004298 26 IAEWNPEKDLLAMATE----------DSKILLHRF-NWQRLWTIS-------PGKSVTSLCWRPDGKAIAVGLE--DGTI 85 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~----------Dg~V~v~~l-~~~~v~~~~-------~~~~V~~l~wspDG~~Lasg~~--Dg~V 85 (763)
.++|+|+++++.+++. ++.|.+|+. +++.+..+. .+.....++++|||++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 7899999999988863 678999998 566666654 2345678999999999999874 6899
Q ss_pred EEEEccCCeEEEE-ec
Q 004298 86 TLHDVENGKLLRS-LK 100 (763)
Q Consensus 86 ~lwdve~g~~~~~-l~ 100 (763)
.+||+.+++.+.. +.
T Consensus 134 ~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTA 149 (361)
T ss_dssp EEEETTTTEEEEEEGG
T ss_pred EEEECCCCcEEEEEec
Confidence 9999999999888 64
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-06 Score=91.30 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=79.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-CceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~ 96 (763)
++|+ |..++| +++.|+++ .++.|++|++. -...... .+...+.++.+.+. .+|++..||.|.+||+.++...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc
Confidence 4677 999999 89999998 78999999982 2222222 24556888777664 3999999999999999988765
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
. +...|+|++|+|+| ++.|. .|+++++|+..
T Consensus 160 ~----~~~~Vs~v~WSpkG--~~vg~------~dg~i~~~~~~ 190 (388)
T 1xip_A 160 Q----LAQNVTSFDVTNSQ--LAVLL------KDRSFQSFAWR 190 (388)
T ss_dssp E----EEESEEEEEECSSE--EEEEE------TTSCEEEEEEE
T ss_pred c----ccCCceEEEEcCCc--eEEEE------cCCcEEEEcCC
Confidence 3 34689999999999 34454 68999999654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-05 Score=85.09 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCEEEEEeCC---------------------------CeEEEEEccCceE-EEecCCCcEEEEEEccCCCE
Q 004298 24 IKIAEWNPEKDLLAMATED---------------------------SKILLHRFNWQRL-WTISPGKSVTSLCWRPDGKA 75 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D---------------------------g~V~v~~l~~~~v-~~~~~~~~V~~l~wspDG~~ 75 (763)
+..++|+|+++.|+.++.+ ..|++|++.+... ..+... .+..++|+||| +
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~ 183 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-I 183 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-E
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-E
Confidence 7889999999999887642 5688899854443 444333 78899999999 7
Q ss_pred EEEEEcCC-------cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCC--cccCCceeecCCCCCCCCCC
Q 004298 76 IAVGLEDG-------TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIP--TYEDRTSRFFPPAPRIPQMP 146 (763)
Q Consensus 76 Lasg~~Dg-------~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~--~~~d~~i~~wd~~~~~~~l~ 146 (763)
++++..++ ...||.+.+++. ..+..+ ..+.. ++|+|+.++..+.... ......+.+|| ......+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~ 258 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGIL 258 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESS
T ss_pred EEEEecccccccccccccEEEeCCCce-EEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEecc
Confidence 77776542 445555555554 444444 44544 4999998776542110 01134566777 22111111
Q ss_pred CcccCCcccccCCcccccc-eecccCCCeeEEEEEcCCCcEEEEEcC
Q 004298 147 GLVSGDTGFTDDSEDSFRE-LANSSHQRFSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 147 ~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~L~sgs~DG~I~lw~~~ 192 (763)
.++ ...+.. +.+ + ++ ++++++.+|.+++| ++
T Consensus 259 ---~~~-------~~~~~~~~~~--s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 259 ---DEV-------DRGVGQAKIK--D-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp ---TTC-------CSEEEEEEEE--T-TE-EEEEEEETTEEEEE-EE
T ss_pred ---ccC-------CcccCCccEE--c-Cc-EEEEEecCCcEEEE-Ec
Confidence 111 111221 233 3 55 88999999999999 76
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-05 Score=80.83 Aligned_cols=152 Identities=5% Similarity=-0.055 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLA-MATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA-~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
....++++|++++++ +.+.++.|.+|+..+.....+. ....+.+++++|+|+++++.. ++.|.+||...+.. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 478899999999777 4467889999988554444433 235688999999999665555 88999999875543 333
Q ss_pred c-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 100 K-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 100 ~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
. .....+.++.+.+++...++.. .++.+..|+.......... ...+ .....+ ..++++++++
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~------~~~~i~~~~~~~~~~~~~~----~~~~-----~~p~~i--~~~~~g~l~v 165 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADR------GNNRVVKLAAGSKTQTVLP----FTGL-----NDPDGV--AVDNSGNVYV 165 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEG------GGTEEEEECTTCCSCEECC----CCSC-----CSCCCE--EECTTCCEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEEC------CCCEEEEEECCCceeEeec----cccC-----CCceeE--EEeCCCCEEE
Confidence 2 2235789999999998776654 5677888865432111000 0000 001112 2345667777
Q ss_pred EEcCCCcEEEEEcCc
Q 004298 179 SGDKDGSICFNIFGI 193 (763)
Q Consensus 179 sgs~DG~I~lw~~~~ 193 (763)
+...++.|..|+...
T Consensus 166 ~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 166 TDTDNNRVVKLEAES 180 (270)
T ss_dssp EEGGGTEEEEECTTT
T ss_pred EECCCCEEEEEecCC
Confidence 777788898887554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.5e-06 Score=96.14 Aligned_cols=189 Identities=11% Similarity=0.002 Sum_probs=113.6
Q ss_pred EEEEEcCCCCEEEEEeCCCe-------------EEEEEcc-Cc----eEEEec-CCCcEEEEEEccCCCEEEEEEcCC--
Q 004298 25 KIAEWNPEKDLLAMATEDSK-------------ILLHRFN-WQ----RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG-- 83 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~-------------V~v~~l~-~~----~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg-- 83 (763)
..++|+|+|+.|+.++.|.. |++|++. ++ .++... +...+.++.|+|||++|++++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 67899999999999988765 9999993 33 333332 335788999999999999888766
Q ss_pred --cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC-c
Q 004298 84 --TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS-E 160 (763)
Q Consensus 84 --~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~-~ 160 (763)
.|++|+..+++. ..+..+...+....| +++.+++.+.. ...++.+..||........ ........ .
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~---~~~~~~l~~~d~~~~~~~~------~~~l~~~~~~ 319 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDE---GAPRQRVFEVDPAKPARAS------WKEIVPEDSS 319 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECT---TCTTCEEEEEBTTBCSGGG------CEEEECCCSS
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECC---CCCCCEEEEEeCCCCCccC------CeEEecCCCC
Confidence 677777655553 445555666677777 56664333321 1135778888875421000 00011000 1
Q ss_pred ccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 161 DSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 161 ~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
..+..+.+ . +..++++...||..++|.++.- |.. ......+ . .+.+..++++||++.+++..
T Consensus 320 ~~l~~~~~--~-~~~lv~~~~~dg~~~l~~~~~~--g~~-~~~l~~~-----~-------~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 320 ASLLSVSI--V-GGHLSLEYLKDATSEVRVATLK--GKP-VRTVQLP-----G-------VGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp CEEEEEEE--E-TTEEEEEEEETTEEEEEEEETT--CCE-EEECCCS-----S-------SSEECCCBSCTTCSEEEEEE
T ss_pred CeEEEEEE--E-CCEEEEEEEECCEEEEEEEeCC--CCe-eEEecCC-----C-------CeEEEEeecCCCCCEEEEEE
Confidence 11222332 2 4568889999999999975421 110 0000000 0 12355678889998888776
Q ss_pred ec
Q 004298 241 SG 242 (763)
Q Consensus 241 ~d 242 (763)
++
T Consensus 382 ss 383 (695)
T 2bkl_A 382 TS 383 (695)
T ss_dssp EE
T ss_pred cC
Confidence 54
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-06 Score=97.78 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEEEcCCc------------
Q 004298 23 QIKIAEWNPEKDLLAMATED-----SKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVGLEDGT------------ 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D-----g~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg~~Dg~------------ 84 (763)
.+..++|||||++||.+..+ ..|++|++.+...... .++..+..++|+|| +.|+.+..|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 37789999999999987654 3699999955443332 12223357899999 99999887654
Q ss_pred --EEEEEccCCe----EEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 85 --ITLHDVENGK----LLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 85 --V~lwdve~g~----~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|++|++.++. .+.....+...+..+.|+|||++++..+..... ....+.+||...
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~ 303 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD-PVNTVHVARVTN 303 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC-SCCEEEEEEEET
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC-CcceEEEEECCC
Confidence 8999988765 333333333468899999999987765411000 134667776543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-05 Score=79.75 Aligned_cols=190 Identities=9% Similarity=0.022 Sum_probs=111.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEcC---------CcE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLED---------GTI 85 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~D---------g~V 85 (763)
+..+.+++++|++++++. . ++.|.+|+.....+..+. +...++.++++|||++.++...+ +..
T Consensus 53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence 355899999999996554 4 567999998544433321 22358899999999977655432 334
Q ss_pred EEEEcc-CCeEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC--cc
Q 004298 86 TLHDVE-NGKLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS--ED 161 (763)
Q Consensus 86 ~lwdve-~g~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~--~~ 161 (763)
.||.+. +++... +..+......++|+|+++.+. +.+ .++.+..|+..+....+. ....+.... ..
T Consensus 131 ~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~------~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 131 ALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDS------LSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQ 199 (297)
T ss_dssp EEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEG------GGTEEEEEEECTTTCCEE----EEEEEEECCGGGC
T ss_pred EEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecC------CCCcEEEEeccCCCCccc----CcEEEEECCCCCC
Confidence 566654 344433 323345568899999998654 333 467788886532111110 000010000 00
Q ss_pred cccceecccCCCeeEEEEEcCCCcEEEEEcC-ceeeeeeeecccccccccCCCCCceeeeccceeeEEec-CCCCEEEEE
Q 004298 162 SFRELANSSHQRFSILCSGDKDGSICFNIFG-IFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS-KDLFHLTVL 239 (763)
Q Consensus 162 ~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~-~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S-pDg~~Llv~ 239 (763)
.... ...++++++.++...++.|..|+.. ......+.++ ...+.+++|+ ||++.|++.
T Consensus 200 ~p~g--~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p------------------~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 200 IPDG--MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP------------------VDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEE--EEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS------------------SSBEEEEEEESGGGCEEEEE
T ss_pred CCCe--eEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC------------------CCCceEEEEeCCCCCEEEEE
Confidence 1111 2234566777777777788888754 2233333221 1246789998 899999998
Q ss_pred eecC
Q 004298 240 CSGQ 243 (763)
Q Consensus 240 ~~d~ 243 (763)
+...
T Consensus 260 ~~~~ 263 (297)
T 3g4e_A 260 CARD 263 (297)
T ss_dssp EBCT
T ss_pred cCCc
Confidence 7643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.3e-05 Score=81.21 Aligned_cols=186 Identities=8% Similarity=-0.070 Sum_probs=118.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+++.....+.+. .+.+.++...++.|.+++. +++.+..+..+.....++++|+|+..++...++.|.+||..+++...
T Consensus 41 ~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 41 KLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 445556778875 4556666667899999999 67777888777889999999999554444489999999999999888
Q ss_pred EecccC-----CceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 98 SLKSHT-----VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 98 ~l~~h~-----~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
.+.... .....+++ .+++..++..+ .++.+.++|..+.. ........ ... .....++
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-----~~~~v~viD~~t~~--~~~~i~~g--------~~p--~~i~~~~ 181 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-----YQNRILKIDTETDK--VVDELTIG--------IQP--TSLVMDK 181 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECT-----TCCEEEEEETTTTE--EEEEEECS--------SCB--CCCEECT
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCC-----CCCEEEEEECCCCe--EEEEEEcC--------CCc--cceEEcC
Confidence 776433 15567777 44554444310 37788899876421 00000000 000 1122346
Q ss_pred CeeEEEEEcCC----------CcEEEEEcCceeee-eeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 173 RFSILCSGDKD----------GSICFNIFGIFPIG-KINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 173 ~~~~L~sgs~D----------G~I~lw~~~~~~ig-~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
++++++++..+ +.|.+++.....+. .+.+.. + .....++++||++.++++.
T Consensus 182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-------g----------~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-------G----------DWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-------T----------CCCEEEEECTTSCEEEEES
T ss_pred CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-------C----------CCceeEEEecCCCEEEEEc
Confidence 67777776654 78888876544332 222110 0 1245789999999998864
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=94.95 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCCCEEEEEeCC-Ce--EEEEEc--c-Cc--eEEEec---CC--CcEEEEEEccCCCEEEEEEcCC-----cEEEEEccC
Q 004298 31 PEKDLLAMATED-SK--ILLHRF--N-WQ--RLWTIS---PG--KSVTSLCWRPDGKAIAVGLEDG-----TITLHDVEN 92 (763)
Q Consensus 31 P~~~lLA~~s~D-g~--V~v~~l--~-~~--~v~~~~---~~--~~V~~l~wspDG~~Lasg~~Dg-----~V~lwdve~ 92 (763)
|+|+.++....+ +. -.+|+. . ++ .+.... .+ ..+.+++|||||++||.+..++ .|++||+++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 899888865543 22 245555 2 22 222211 12 2578999999999999887644 899999999
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+.+..... ...+..++|+|||+.++.++
T Consensus 161 g~~~~~~~~-~~~~~~~~wspDg~~l~~~~ 189 (710)
T 2xdw_A 161 AKELPDVLE-RVKFSCMAWTHDGKGMFYNA 189 (710)
T ss_dssp TEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred CCCCccccc-CcccceEEEEeCCCEEEEEE
Confidence 988764322 23477899999999887765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.10 E-value=8e-05 Score=79.10 Aligned_cols=190 Identities=9% Similarity=-0.037 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC------cEEEEEEccCCCEEEEEE-cCCcEEEEEccCC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK------SVTSLCWRPDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~------~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
.....++++|++.+.++...++.|.+|+. +++.+..+..+. ....+++ .+++.+++.. .++.|.++|.+++
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence 34788999999865555547899999999 455555666554 6777888 4444444444 4899999999999
Q ss_pred eEEEEecccCCceeEEEeecCCCceeccCCCCC----cccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc
Q 004298 94 KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIP----TYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS 169 (763)
Q Consensus 94 ~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~----~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~ 169 (763)
+.+..+.. ......+.++++|++.+++..+.. ....+.+.++|..... +........ ... ....+
T Consensus 163 ~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~------g~~--p~~la 231 (328)
T 3dsm_A 163 KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKL------GDW--PSEVQ 231 (328)
T ss_dssp EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCT------TCC--CEEEE
T ss_pred eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCC------CCC--ceeEE
Confidence 99888865 345678899999987776641100 0002678888765421 000000000 000 11223
Q ss_pred cCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEe
Q 004298 170 SHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLC 240 (763)
Q Consensus 170 ~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~ 240 (763)
++++++.|.++.. .|.+++.....+.... ....+ ......++++|++..++++.
T Consensus 232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~-------~~~~~--------~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 232 LNGTRDTLYWINN--DIWRMPVEADRVPVRP-------FLEFR--------DTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp ECTTSCEEEEESS--SEEEEETTCSSCCSSC-------SBCCC--------SSCEEEEEECTTTCCEEEEE
T ss_pred EecCCCEEEEEcc--EEEEEECCCCceeeee-------eecCC--------CCceEEEEEcCCCCeEEEEc
Confidence 4455556665544 7777664432221100 00000 12356789999888888875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00025 Score=75.15 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=106.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---C---CCcEEEEEEccCCCEEEEEEc------CCcEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---P---GKSVTSLCWRPDGKAIAVGLE------DGTITLH 88 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~---~~~V~~l~wspDG~~Lasg~~------Dg~V~lw 88 (763)
+..|.+++|+|++++++.. .+ .|.+|+.....+..+. . ...+.+++++|+|++.++... .+.|..+
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 3459999999999887754 44 4888888443333322 1 236899999999997665543 2445555
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceec-cCCCCCcccCCceeecCCCCCCC-CCCCcccCCccccc--CCccccc
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKN-DFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTD--DSEDSFR 164 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s-~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~--~~~~~~~ 164 (763)
+ +++... +..+......++|+|+++.+.. .+ .++.+..|+...... .+.. ...+.. .......
T Consensus 167 ~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~------~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~ 233 (326)
T 2ghs_A 167 A--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT------KVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMD 233 (326)
T ss_dssp E--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET------TTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEE
T ss_pred e--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC------CCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCC
Confidence 5 565443 3233345788999999975543 33 467788887641101 1100 000000 0000111
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEec-CCCCEEEEEeecC
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS-KDLFHLTVLCSGQ 243 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S-pDg~~Llv~~~d~ 243 (763)
. ...+.++++.++...++.|..|+........+.+ -...+.+++|+ +|++.|++.+..+
T Consensus 234 g--i~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~------------------~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 234 G--SVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV------------------PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp E--EEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC------------------SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred e--eEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC------------------CCCCcEEEEEecCCCCEEEEEecCC
Confidence 1 2234556666666566777777643222222211 11247789998 8999998876643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=85.44 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=75.3
Q ss_pred EEEEcCCCCEEEEEeC-----------CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCC
Q 004298 26 IAEWNPEKDLLAMATE-----------DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENG 93 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~-----------Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g 93 (763)
.++++|+++.+.++.. .+.|.+|++ +++.+..+.-+. +.+++|+|||++|++++. ++|.+||.+++
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3789999887776543 358999999 677777777666 999999999999999887 99999999999
Q ss_pred --eEEEEecccCCceeEEEeecCCC
Q 004298 94 --KLLRSLKSHTVAVVCLNWEEDAQ 116 (763)
Q Consensus 94 --~~~~~l~~h~~~V~~l~ws~~~~ 116 (763)
+.+.++..+......+.++|+|.
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 99999876777888999999885
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-05 Score=90.39 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCc------------
Q 004298 23 QIKIAEWNPEKDLLAMATE-----DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGT------------ 84 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-----Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~------------ 84 (763)
.+..++|||||+++|.+.. ...|+++++ +++.+-...++....+++|+ ||+.|+.+..++.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 4788999999999996432 247999999 45443332222223578999 9999999987754
Q ss_pred -EEEEEccCCe----EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 85 -ITLHDVENGK----LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 85 -V~lwdve~g~----~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
|++|++.++. .+..... |...+..+.|+|+|++++..... ......+.++|...
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN--STSGNRLYVKDLSQ 268 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES--SSSCCEEEEEETTS
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc--CCCCcEEEEEECCC
Confidence 9999988754 3433334 45567889999999977432200 01235778887654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00037 Score=71.57 Aligned_cols=151 Identities=8% Similarity=-0.013 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR- 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~- 97 (763)
..+.+++++|++.+.++...++.|.+|+.. ..+..+. +...+.+++++|+|++.++...++.|..||.. ++...
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 358999999999988776668899999988 4443332 45679999999999988887778999999976 44322
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.+......+.++.+.+++...++.. .++.+..|+.......... ... ..... ....++++++.
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~d~~g~~~~~~~--~~~-------~~~~~--~i~~~~~g~l~ 155 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEM------NGNRIGRITDDGKIREYEL--PNK-------GSYPS--FITLGSDNALW 155 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTCCEEEEEC--SST-------TCCEE--EEEECTTSCEE
T ss_pred eCCCcCCCceeeEECCCCCEEEEec------CCceEEEECCCCCEEEecC--CCC-------CCCCc--eEEEcCCCCEE
Confidence 2222456789999999998777654 4667777876321110000 000 00111 12234566777
Q ss_pred EEEcCCCcEEEEEc
Q 004298 178 CSGDKDGSICFNIF 191 (763)
Q Consensus 178 ~sgs~DG~I~lw~~ 191 (763)
++...++.|..++.
T Consensus 156 v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 156 FTENQNNAIGRITE 169 (299)
T ss_dssp EEETTTTEEEEECT
T ss_pred EEeCCCCEEEEEcC
Confidence 77766788887764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.7e-05 Score=78.17 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=108.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--C---CCcEEEEEEccCCCEEEE----EEc-----------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--P---GKSVTSLCWRPDGKAIAV----GLE----------- 81 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~---~~~V~~l~wspDG~~Las----g~~----------- 81 (763)
..+..++|+|+|+++++...++.|.+|+.+++...-.. . ...+.+++++|||++.++ |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 34789999999998776666688999998755322221 1 134678999999998886 332
Q ss_pred --CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC
Q 004298 82 --DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 82 --Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~ 159 (763)
.+.|..||..+|+..... .......++|+|+++.+..+.........+.+..|+..... + .....+....
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l----~~~~~~~~~~ 237 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--L----HDRRHFASVP 237 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--E----EEEEEEECCS
T ss_pred cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--c----cCCeEEEECC
Confidence 256777887677654433 34567889999999865544310000002567777654311 0 0000000000
Q ss_pred cccccceecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEE
Q 004298 160 EDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVL 239 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~ 239 (763)
......+ ..++++++.+ ++.+| |.+|+.+....+.+.... .+..++|++|++.|++.
T Consensus 238 ~~~pdgi--~~d~~G~lwv-~~~~g-v~~~~~~g~~~~~~~~~~-------------------~~~~~~f~~d~~~L~it 294 (305)
T 3dr2_A 238 DGLPDGF--CVDRGGWLWS-SSGTG-VCVFDSDGQLLGHIPTPG-------------------TASNCTFDQAQQRLFIT 294 (305)
T ss_dssp SSCCCSE--EECTTSCEEE-CCSSE-EEEECTTSCEEEEEECSS-------------------CCCEEEECTTSCEEEEE
T ss_pred CCCCCeE--EECCCCCEEE-ecCCc-EEEECCCCCEEEEEECCC-------------------ceeEEEEeCCCCEEEEE
Confidence 0001112 2345566444 44444 777765444444443211 24578999999999988
Q ss_pred eec
Q 004298 240 CSG 242 (763)
Q Consensus 240 ~~d 242 (763)
+.+
T Consensus 295 ~~~ 297 (305)
T 3dr2_A 295 GGP 297 (305)
T ss_dssp ETT
T ss_pred cCC
Confidence 754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00015 Score=75.58 Aligned_cols=199 Identities=6% Similarity=-0.037 Sum_probs=115.7
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEe-c------CCCcEEEEEEccCCCEEEEEEcC-----------
Q 004298 22 SQIKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTI-S------PGKSVTSLCWRPDGKAIAVGLED----------- 82 (763)
Q Consensus 22 ~~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~-~------~~~~V~~l~wspDG~~Lasg~~D----------- 82 (763)
..+..++++|+ ++++++.. .+.|.+|+.++ ++..+ . +...+.+++++|+|++.++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~g-~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETTS-CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCCC-CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 45889999999 77665444 45788899884 44443 2 12358899999999988777655
Q ss_pred ----CcEEEEEccCCeEEEEecccCCceeEEEee----cCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCc
Q 004298 83 ----GTITLHDVENGKLLRSLKSHTVAVVCLNWE----EDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDT 153 (763)
Q Consensus 83 ----g~V~lwdve~g~~~~~l~~h~~~V~~l~ws----~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~ 153 (763)
+.|..|+.. ++..... .+......+.|+ ++++.+ ++.. .++.+..|+.... ..+.. .....
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~------~~~~i~~~~~~~~-g~~~~-~~~~~ 218 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGP-AKIEN-KKVWG 218 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEET-TEEEE-EEEEE
T ss_pred cCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEEC------CCCeEEEEECCCC-Ccccc-ceEEE
Confidence 567777765 6554333 333456889999 998644 4433 4677888875410 00000 00000
Q ss_pred ccccCCc-ccccceecccCCCeeEEEEEcCCCcEEEEEcC-ceeeeeeeecccccccccCCCCCceeeeccceeeEEecC
Q 004298 154 GFTDDSE-DSFRELANSSHQRFSILCSGDKDGSICFNIFG-IFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~-~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
.+. ... .... ....+++++++++...++.|..|+.. ......+.. ....+.++++++
T Consensus 219 ~~~-~~~~~~p~--~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~------------------~~~~~~~i~~~~ 277 (314)
T 1pjx_A 219 HIP-GTHEGGAD--GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC------------------PFEKPSNLHFKP 277 (314)
T ss_dssp ECC-CCSSCEEE--EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC------------------SSSCEEEEEECT
T ss_pred ECC-CCCCCCCC--ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC------------------CCCCceeEEECC
Confidence 000 000 0111 12344667778777778888888754 111122211 112467899999
Q ss_pred CCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 232 DLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 232 Dg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
||+.|+++..+. .+|..+.++.
T Consensus 278 dg~~l~v~~~~~-----------~~l~~~~~~~ 299 (314)
T 1pjx_A 278 QTKTIFVTEHEN-----------NAVWKFEWQR 299 (314)
T ss_dssp TSSEEEEEETTT-----------TEEEEEECSS
T ss_pred CCCEEEEEeCCC-----------CeEEEEeCCC
Confidence 999888876432 3566666554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00077 Score=69.16 Aligned_cols=152 Identities=9% Similarity=0.000 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCce-EEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQR-LWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS- 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~-v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~- 98 (763)
..+..++++|++.+.++...++.|..|+.+++. .+.+. ....+.++++.|+|++.++...++.|..||. +++....
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 458899999999988877778899999987543 22222 4567899999999998888778899999998 6665433
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
...+...+.++.+.+++...++.. .++.+..|+.......... ... .... .....++++++.+
T Consensus 136 ~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~--~~~-------~~~~--~~i~~~~~g~l~v 198 (299)
T 2z2n_A 136 LPNKGSYPSFITLGSDNALWFTEN------QNNAIGRITESGDITEFKI--PTP-------ASGP--VGITKGNDDALWF 198 (299)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECTTCCEEEEEC--SST-------TCCE--EEEEECTTSSEEE
T ss_pred CCCCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcCCCcEEEeeC--CCC-------CCcc--eeEEECCCCCEEE
Confidence 233446789999999998776654 4567777776221111000 000 0011 1122345566777
Q ss_pred EEcCCCcEEEEEc
Q 004298 179 SGDKDGSICFNIF 191 (763)
Q Consensus 179 sgs~DG~I~lw~~ 191 (763)
+...++.|..|+.
T Consensus 199 ~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 199 VEIIGNKIGRITT 211 (299)
T ss_dssp EETTTTEEEEECT
T ss_pred EccCCceEEEECC
Confidence 7666788888764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00053 Score=71.39 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=70.7
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
.....|+|+. .++++...++.|..|+..+.....+.....+.+++|+|||+++++ . ++.|.+||.++++........
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecC
Confidence 4578999965 566666778899999996665555556678999999999995554 4 678999999888764333221
Q ss_pred ----CCceeEEEeecCCCceecc
Q 004298 103 ----TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 103 ----~~~V~~l~ws~~~~~l~s~ 121 (763)
...+..+.++|+|++.++.
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEec
Confidence 2357889999999876654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=78.82 Aligned_cols=157 Identities=10% Similarity=-0.091 Sum_probs=100.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC--cEEEEEccCCeEEEEe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG--TITLHDVENGKLLRSL 99 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg--~V~lwdve~g~~~~~l 99 (763)
....++|+|+++++++...++.|++|+..+..+..+. ...... ++|+|+|+.|+++..++ .|..|+..++.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 4788999999998888888899999999766665554 333334 99999999999988766 7899998766554444
Q ss_pred ----cccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce-ecccCC-
Q 004298 100 ----KSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL-ANSSHQ- 172 (763)
Q Consensus 100 ----~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~-~~~~~~- 172 (763)
..+...+.+++++| ++.+.+ +. .++.+..|+........... .+... ....... ...+++
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv-~d------~~~~I~~~d~~~~~~~~~~~-~~~~g-----~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYF-VD------SNKNFGRFNVKTQEVTLIKQ-LELSG-----SLGTNPGPYLIYYFV 277 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEE-EC------TTCEEEEEETTTCCEEEEEE-CCCCS-----CCCCSSCCEEEEETT
T ss_pred eeccchhcCCcEEEEEeCCCCeEEE-EE------CCCcEEEEECCCCCEEEEec-ccccC-----CCCCCccccEEEeCC
Confidence 22456788999999 455444 43 46778888765421110000 00000 0000101 222344
Q ss_pred CeeEEEEEcCCCcEEEEEcCc
Q 004298 173 RFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~ 193 (763)
++.++++...+++|+.|+.+.
T Consensus 278 ~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 278 DSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp TTEEEEEETTTTEEEEECTTC
T ss_pred CCEEEEEeCCCCEEEEEecCC
Confidence 467777777888888887553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.1e-05 Score=88.91 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=60.8
Q ss_pred cCCCCEEEEEeCCCe---EEEEEc--c---CceEEEe------cCCC--cEEEEEEccCCCEEEEEEcC-----CcEEEE
Q 004298 30 NPEKDLLAMATEDSK---ILLHRF--N---WQRLWTI------SPGK--SVTSLCWRPDGKAIAVGLED-----GTITLH 88 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~---V~v~~l--~---~~~v~~~------~~~~--~V~~l~wspDG~~Lasg~~D-----g~V~lw 88 (763)
+|+|+.++....++. -.+|+. . +.....+ ..+. .+.+++|||||++||.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998887665432 556665 2 3322221 1222 67899999999999988754 359999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
|+++|+.+... .+...+..++|+|| +.++.++
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~ 226 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSR 226 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEE
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEE
Confidence 99999876532 22223467899999 8777655
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0014 Score=71.04 Aligned_cols=75 Identities=12% Similarity=-0.000 Sum_probs=59.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEecC--------CCcEEEEEEccCCCEEEEEEc--CCc
Q 004298 26 IAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTISP--------GKSVTSLCWRPDGKAIAVGLE--DGT 84 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~~--------~~~V~~l~wspDG~~Lasg~~--Dg~ 84 (763)
.+++||+++.+.++. .++.|.+|+. +.+.+..+.- +.....++|+|||++|.++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 799999999988876 3678999999 5555555542 234568999999999999874 588
Q ss_pred EEEEEccCCeEEEE-ecc
Q 004298 85 ITLHDVENGKLLRS-LKS 101 (763)
Q Consensus 85 V~lwdve~g~~~~~-l~~ 101 (763)
|.++| ++++.+.. +..
T Consensus 150 v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred EEEEE-CCCCEEeEEcCC
Confidence 99999 99999888 643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00052 Score=71.31 Aligned_cols=111 Identities=12% Similarity=0.095 Sum_probs=78.5
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------------CeEEEEEccCceEEEecCCCcEEEEEEc----cCCCEEEEEE-cC
Q 004298 23 QIKIAEWNPEKDLLAMATED---------------SKILLHRFNWQRLWTISPGKSVTSLCWR----PDGKAIAVGL-ED 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---------------g~V~v~~l~~~~v~~~~~~~~V~~l~ws----pDG~~Lasg~-~D 82 (763)
.+..++++|++++.++...+ +.|..++.+++......+......++|+ |||+.+.++. .+
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~ 197 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT 197 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence 47899999999988776655 4566666564433323333457889999 9998766664 68
Q ss_pred CcEEEEEcc-CCeE-----EEEecccC-CceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 83 GTITLHDVE-NGKL-----LRSLKSHT-VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 83 g~V~lwdve-~g~~-----~~~l~~h~-~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+.|.+|+.. +++. ...+..+. ..+..++++++|...++.. .++.+..|+..
T Consensus 198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~------~~~~i~~~d~~ 255 (314)
T 1pjx_A 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW------GSSHIEVFGPD 255 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE------TTTEEEEECTT
T ss_pred CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc------CCCEEEEEcCC
Confidence 999999986 5652 33344443 5688899999998777654 46788888876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00084 Score=73.83 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=61.4
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEecC--------CCcEEEEEEccCCCEEEEEEc--CCc
Q 004298 26 IAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTISP--------GKSVTSLCWRPDGKAIAVGLE--DGT 84 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~~--------~~~V~~l~wspDG~~Lasg~~--Dg~ 84 (763)
.++++|+++.+.++. .++.|.+++. +.+.+..+.- +.....+.++|||+++.++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 699999999887776 3678999999 6666666642 234567899999999999874 688
Q ss_pred EEEEEccCCeEEEEecc
Q 004298 85 ITLHDVENGKLLRSLKS 101 (763)
Q Consensus 85 V~lwdve~g~~~~~l~~ 101 (763)
|.+.|+.+++.+.++..
T Consensus 202 VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCeEEEEEEc
Confidence 99999999999988864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00077 Score=70.40 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=70.5
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
.....|+|+++ ++++...++.|..|+.+++......+...+.+++|+|+|+++++...++.|..|+.+ |+........
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence 67889999998 667777889999999866532222355678999999999977776677899999976 6543222111
Q ss_pred ----CCceeEEEeecCCCceec
Q 004298 103 ----TVAVVCLNWEEDAQPSKN 120 (763)
Q Consensus 103 ----~~~V~~l~ws~~~~~l~s 120 (763)
...+..+.+.++|...++
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEE
T ss_pred CCCccCCCCCEEECCCCCEEEe
Confidence 135678999999987775
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=82.42 Aligned_cols=200 Identities=12% Similarity=-0.021 Sum_probs=127.9
Q ss_pred CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE
Q 004298 21 ASQIKIAEW-N-PEKDLLAMAT------------------EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG 79 (763)
Q Consensus 21 ~~~V~~l~~-s-P~~~lLA~~s------------------~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg 79 (763)
......+++ + |++.++.+++ .++.+.+.+. +.+.+|.+.-++....++.+|||+++++.
T Consensus 133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFST 212 (595)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEE
T ss_pred CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEE
Confidence 345788898 5 9999988874 2357888898 66778888754466778999999999998
Q ss_pred EcCC--------------------------------------cEEEEEccC--CeE-EEEecccCCceeEEEeecCCCce
Q 004298 80 LEDG--------------------------------------TITLHDVEN--GKL-LRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 80 ~~Dg--------------------------------------~V~lwdve~--g~~-~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
+.+. .|.+.|..+ ++. +..+.. .....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEE
Confidence 8543 478888877 555 556643 3466789999999977
Q ss_pred eccCCCCCcccCCceeecCCCCCC----CCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-
Q 004298 119 KNDFGNIPTYEDRTSRFFPPAPRI----PQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI- 193 (763)
Q Consensus 119 ~s~s~~~~~~~d~~i~~wd~~~~~----~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~- 193 (763)
..++ ..+.++.++|..+.. .++.. ..................++++++..++..-|++|..|+++.
T Consensus 292 ~V~~-----~~s~~VsVid~~~~~~~~~~~l~~----~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a 362 (595)
T 1fwx_A 292 CVAG-----KLSPTVTVLDVTRFDAVFYENADP----RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 362 (595)
T ss_dssp EEEC-----TTSSBEEEEEGGGHHHHHHSCCCG----GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEeC-----CCCCeEEEEECcccccccccccCc----ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence 6654 257778888776310 00100 000000001111223344667777778888999999998765
Q ss_pred ----------eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 194 ----------FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 194 ----------~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+.+++++-.+.+..+ -..+.++|||++|+++....
T Consensus 363 ~~~~~g~~~~~vi~kidV~yqpGh~~~-------------~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 363 IRAYAGEKVDPIKDKLDVHYQPGHLKT-------------VMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp HHHHHTCSCCCEEEEEECSSCEEEEEE-------------TTTTSTTCCSSEEEEEESCC
T ss_pred hhhhcccccceeEEEeeccccccccee-------------ccceEeCCCCCEEEEcCCCC
Confidence 23445554432222111 11245799999999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0067 Score=62.12 Aligned_cols=206 Identities=8% Similarity=-0.108 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEEc-cCceEEEecCCC--cEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATE--DSKILLHRF-NWQRLWTISPGK--SVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~--Dg~V~v~~l-~~~~v~~~~~~~--~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~ 97 (763)
...++|+|++.+.++.+. ++.|.++++ +++.+..+.-+. ....+++. |+.| ++...++.|.++|..+++.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999998766665543 578999999 677666665333 33445554 5455 555578999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCc-ccccCCcccccceecccCCCee
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDT-GFTDDSEDSFRELANSSHQRFS 175 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (763)
++..... .....++++..+..+. .++++.++|..+.. ...... +.. ... .....+.+. ++.
T Consensus 101 ~i~~g~~--~g~glt~Dg~~l~vs~------gs~~l~viD~~t~~--v~~~I~Vg~~~~p~----~~~nele~~---dg~ 163 (266)
T 2iwa_A 101 NFTHQMK--DGWGLATDGKILYGSD------GTSILYEIDPHTFK--LIKKHNVKYNGHRV----IRLNELEYI---NGE 163 (266)
T ss_dssp EEECCSS--SCCEEEECSSSEEEEC------SSSEEEEECTTTCC--EEEEEECEETTEEC----CCEEEEEEE---TTE
T ss_pred EEECCCC--CeEEEEECCCEEEEEC------CCCeEEEEECCCCc--EEEEEEECCCCccc----ccceeEEEE---CCE
Confidence 9864301 1234556777665554 46788999876521 000000 000 000 001122221 234
Q ss_pred EEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecCccccccCCCCC
Q 004298 176 ILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQLSQEELGGHGM 254 (763)
Q Consensus 176 ~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~l~~~~~~~~~~ 254 (763)
+.+....++.|.+-+.... .++.+++.............. ......++++|+++.+++.+...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~-----~~v~nGIa~~~~~~~lfVTgk~~----------- 227 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD-----IDVLNGIAWDQENKRIFVTGKLW----------- 227 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT-----CCCEEEEEEETTTTEEEEEETTC-----------
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccc-----cCceEEEEEcCCCCEEEEECCCC-----------
Confidence 5555555667776665443 345555432110000000000 01235799999999999987532
Q ss_pred CcEEEEEeec
Q 004298 255 HGLHCLVLDT 264 (763)
Q Consensus 255 ~~l~~~~ld~ 264 (763)
+.++.+.+..
T Consensus 228 ~~v~~i~l~~ 237 (266)
T 2iwa_A 228 PKLFEIKLHL 237 (266)
T ss_dssp SEEEEEEEEE
T ss_pred CeEEEEEEec
Confidence 3666666554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0037 Score=63.94 Aligned_cols=150 Identities=9% Similarity=-0.061 Sum_probs=98.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE-E
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR-S 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~-~ 98 (763)
.+.+++++|++++.++...++.|.+|+.+ .++..+. ....+.++++.++|++.++...++.|..+|.. ++... .
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEec
Confidence 58899999999988877778999999988 3343332 23578999999999987777778999999987 66532 2
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+......+.++.+.+++...++.. .++.+..++.......... ... .... .....++++++.+
T Consensus 99 ~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~--~~~-------~~~~--~~i~~d~~g~l~v 161 (300)
T 2qc5_A 99 LPQPDSGPYGITEGLNGDIWFTQL------NGDRIGKLTADGTIYEYDL--PNK-------GSYP--AFITLGSDNALWF 161 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEET------TTTEEEEECTTSCEEEEEC--SST-------TCCE--EEEEECTTSSEEE
T ss_pred CCCCCCCCccceECCCCCEEEEcc------CCCeEEEECCCCCEEEccC--CCC-------CCCc--eeEEECCCCCEEE
Confidence 222346789999999988776654 4566777765422110000 000 0011 1122345566666
Q ss_pred EEcCCCcEEEEEc
Q 004298 179 SGDKDGSICFNIF 191 (763)
Q Consensus 179 sgs~DG~I~lw~~ 191 (763)
+...++.|..++.
T Consensus 162 ~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 162 TENQNNSIGRITN 174 (300)
T ss_dssp EETTTTEEEEECT
T ss_pred EecCCCeEEEECC
Confidence 6666777777764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0019 Score=70.86 Aligned_cols=158 Identities=8% Similarity=-0.067 Sum_probs=93.5
Q ss_pred EEEcCCCCEEEEEeCCC--eEEEEEccCc-eEEEe----c-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 27 AEWNPEKDLLAMATEDS--KILLHRFNWQ-RLWTI----S-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg--~V~v~~l~~~-~v~~~----~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
++|+|+++.++++..++ .|.+++..+. ....+ . ....+.+++++|++..|.++..++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999888888765 7888887433 22233 2 456688999999555555577789999999987764322
Q ss_pred ----ecccCCce--eEEEeecC-CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC--Ccccc-cceec
Q 004298 99 ----LKSHTVAV--VCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD--SEDSF-RELAN 168 (763)
Q Consensus 99 ----l~~h~~~V--~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~--~~~~~-~~~~~ 168 (763)
..++...- ..++|+|+ +.+.++.. ..+.|..|+.......+.+.. +..++.++ ....+ .....
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~------~~~~I~~~~~~g~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gi 328 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ------NLSSVYKITPDGECEWFCGSA-TQKTVQDGLREEALFAQPNGM 328 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEET------TTTEEEEECTTCCEEEEEECT-TCCSCBCEEGGGCBCSSEEEE
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeC------CCCEEEEEecCCCEEEEEeCC-CCCCcCCCcccccEeCCCeEE
Confidence 22222222 39999995 55555554 567788887654311111000 00011100 00001 01223
Q ss_pred ccCCCeeEEEEEc-CCCcEEEEEc
Q 004298 169 SSHQRFSILCSGD-KDGSICFNIF 191 (763)
Q Consensus 169 ~~~~~~~~L~sgs-~DG~I~lw~~ 191 (763)
+.+++++++++-+ .+++|+.|+.
T Consensus 329 a~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 329 TVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp EECTTCCEEEEETTTTCEEEEEET
T ss_pred EEeCCCCEEEEeCCCCCEEEEEEC
Confidence 3456677777777 7888888873
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00098 Score=70.52 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=70.3
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
.....|+|++ .++++...++.|..|+..++.+..+.....+.+++|+|||+++++. .+ .|.+||.++++.......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCC
Confidence 4678999975 5566666788999999976655555555789999999999877754 44 499999988876433221
Q ss_pred --c-CCceeEEEeecCCCceecc
Q 004298 102 --H-TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 102 --h-~~~V~~l~ws~~~~~l~s~ 121 (763)
. ...+..+.++|+|++.++.
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~ 151 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGT 151 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEEe
Confidence 1 2368899999999876654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0057 Score=62.54 Aligned_cols=152 Identities=9% Similarity=-0.014 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE-EEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL-WTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS- 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v-~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~- 98 (763)
..+..++++|++.+.++...++.|..|+.+++.. +... .+..+.++++.|+|++.++...++.|..+|.. ++....
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 4588999999999888776688899999875432 2222 34678999999999988877778899999987 665532
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEE
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILC 178 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 178 (763)
+......+.++.+.+++...++.. .++.+..++........ ..... .... .....++++++.+
T Consensus 141 ~~~~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~~g~~~~~----~~~~~-----~~~~--~~i~~d~~g~l~v 203 (300)
T 2qc5_A 141 LPNKGSYPAFITLGSDNALWFTEN------QNNSIGRITNTGKLEEY----PLPTN-----AAAP--VGITSGNDGALWF 203 (300)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEET------TTTEEEEECTTCCEEEE----ECSST-----TCCE--EEEEECTTSSEEE
T ss_pred CCCCCCCceeEEECCCCCEEEEec------CCCeEEEECCCCcEEEe----eCCCC-----CCCc--ceEEECCCCCEEE
Confidence 333346789999999998666554 45667777763211100 00000 0011 1122345566777
Q ss_pred EEcCCCcEEEEEc
Q 004298 179 SGDKDGSICFNIF 191 (763)
Q Consensus 179 sgs~DG~I~lw~~ 191 (763)
+....+.|..++.
T Consensus 204 ~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 204 VEIMGNKIGRITT 216 (300)
T ss_dssp EETTTTEEEEECT
T ss_pred EccCCCEEEEEcC
Confidence 6666777877764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.8e-05 Score=85.79 Aligned_cols=138 Identities=14% Similarity=0.021 Sum_probs=76.1
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-cee-E
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVV-C 108 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~-~ 108 (763)
+++.+++++.||.|..|+. +|+.+|.+.. ..+.+..+.++|+.+++++.||.|+.||.++|+.+.++..+.. .+. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 5788999999999999997 8999999987 5566666677888888889999999999999988766643311 110 0
Q ss_pred EEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEE
Q 004298 109 LNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICF 188 (763)
Q Consensus 109 l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~l 188 (763)
.... .+..+++++ .++.+..||..+...... ...... .. ..+....+++++.||.|+.
T Consensus 87 p~~~-~~~~v~~g~------~dg~v~a~D~~tG~~~w~--~~~~~~-----------~~--~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 87 PCRS-SDGILYMGK------KQDIWYVIDLLTGEKQQT--LSSAFA-----------DS--LSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp SCC------CCCCE------EEEEEEEECCC-------------------------------------EEEEEEEEEEEC
T ss_pred ceEe-cCCEEEEEe------CCCEEEEEECCCCcEEEE--ecCCCc-----------cc--ccccCCEEEEEecCCEEEE
Confidence 0111 233445554 688899999875211100 000000 00 1125567888888999988
Q ss_pred EEcC
Q 004298 189 NIFG 192 (763)
Q Consensus 189 w~~~ 192 (763)
|+..
T Consensus 145 ~d~~ 148 (369)
T 2hz6_A 145 YDTK 148 (369)
T ss_dssp CCSS
T ss_pred EECC
Confidence 8743
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0021 Score=68.40 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=75.7
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEEccCceEEEec--------CCCcEEEEEEccCCCEEEEEEc-----CCcEEE
Q 004298 23 QIKIAEWNPEKDLLAMAT--EDSKILLHRFNWQRLWTIS--------PGKSVTSLCWRPDGKAIAVGLE-----DGTITL 87 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s--~Dg~V~v~~l~~~~v~~~~--------~~~~V~~l~wspDG~~Lasg~~-----Dg~V~l 87 (763)
.+..++++|+|+++++.. .++.+.||.++..++..+. +-..+.+++++|+|++.++-.. ++.|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 478899999999988864 2342455555322344332 2246899999999987776554 689999
Q ss_pred EEccCCeEEEEeccc------CCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLKSH------TVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~~h------~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
||..+++.++.+... ...+..+++++++.. .++... ...++.+.+||...
T Consensus 98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~---~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA---PDDKAALIRVDLQT 154 (343)
T ss_dssp EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC---SGGGCEEEEEETTT
T ss_pred EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc---cCCCCeEEEEECCC
Confidence 999999988777532 235688999976433 333210 00356778887653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0098 Score=64.26 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEec--C------CCcEEEEEEccCCCEEEEEEc--CCcE
Q 004298 27 AEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTIS--P------GKSVTSLCWRPDGKAIAVGLE--DGTI 85 (763)
Q Consensus 27 l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~--~------~~~V~~l~wspDG~~Lasg~~--Dg~V 85 (763)
++++|+|+.+.+++ .++.|.+|+. +.+.+..+. . +.....++++|||+++.++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999887765 3678999999 566666654 2 224667999999999998874 6899
Q ss_pred EEEEccCCeEEEEecc
Q 004298 86 TLHDVENGKLLRSLKS 101 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~ 101 (763)
.++|+.+++.+.++..
T Consensus 163 sVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEECCCCcEEEEEEC
Confidence 9999999999998854
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0025 Score=74.93 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=71.3
Q ss_pred EEEEEcCCCCEEEEEeCCC-------------eEEEEEc-cCc----eEEEecC--CCcEEEEEEccCCCEEEEEEc---
Q 004298 25 KIAEWNPEKDLLAMATEDS-------------KILLHRF-NWQ----RLWTISP--GKSVTSLCWRPDGKAIAVGLE--- 81 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg-------------~V~v~~l-~~~----~v~~~~~--~~~V~~l~wspDG~~Lasg~~--- 81 (763)
..++|+ |++.|+.++.+. .|++|++ +++ .++.... ...+.++.|+|||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 457899 999999988774 3999998 332 3443322 345788999999998876553
Q ss_pred -CCcEEEEEccCCe-EEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCC
Q 004298 82 -DGTITLHDVENGK-LLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 82 -Dg~V~lwdve~g~-~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++.|+++|+.++. ....+..+....... |++++..+ +.+..+ .....+..++...
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~---~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD---APNRRLVTVDAAN 314 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT---CTTCEEEEEETTS
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC---CCCCEEEEEeCCC
Confidence 3589999998763 345565666655555 66666544 333210 1234566666654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0037 Score=66.47 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=71.3
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcc-CceEEEec-------CCCcEEEEEEccCCCEE-EEEE---cCCcE
Q 004298 23 QIKIAEWNPEKDLLAMATE-----DSKILLHRFN-WQRLWTIS-------PGKSVTSLCWRPDGKAI-AVGL---EDGTI 85 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-----Dg~V~v~~l~-~~~v~~~~-------~~~~V~~l~wspDG~~L-asg~---~Dg~V 85 (763)
.+..++++|++++.++-+. ++.|.+|++. ++.+..+. ++..+..++++|++..+ ++.. .++.|
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i 147 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL 147 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE
Confidence 5889999999988776544 5789999995 55444443 22356899999865554 4444 67899
Q ss_pred EEEEccCCeEEEEecccC-----------------------------CceeEEEeecCCCceeccC
Q 004298 86 TLHDVENGKLLRSLKSHT-----------------------------VAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~-----------------------------~~V~~l~ws~~~~~l~s~s 122 (763)
.+||..+++..+.+..|. ..+..|+|+|+++.+..+.
T Consensus 148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 999999888877664431 1357789999987666553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.013 Score=59.52 Aligned_cols=193 Identities=12% Similarity=-0.008 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDS--KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~l 99 (763)
...+.|+ ++.++.+.+.+| .|.++++ +++.+..+.-+.........++|+.| ...+.++.+.+||.++.+.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 5788998 677777777766 8999999 67766666544444443344445554 44557999999999999999998
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCc-ccccCCcccccceecccCCCeeEE
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDT-GFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~-~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
.... .....++++..+..+. ..+.+.++|..+.. ...... +.. ... ..++++.+. ++.+.
T Consensus 124 ~~~~---eG~glt~dg~~L~~Sd------Gs~~i~~iDp~T~~--v~~~I~V~~~g~~~----~~lNELe~~---~G~ly 185 (262)
T 3nol_A 124 NYDG---EGWGLTHNDQYLIMSD------GTPVLRFLDPESLT--PVRTITVTAHGEEL----PELNELEWV---DGEIF 185 (262)
T ss_dssp ECSS---CCCCEEECSSCEEECC------SSSEEEEECTTTCS--EEEEEECEETTEEC----CCEEEEEEE---TTEEE
T ss_pred ECCC---CceEEecCCCEEEEEC------CCCeEEEEcCCCCe--EEEEEEeccCCccc----cccceeEEE---CCEEE
Confidence 7532 2233345666555543 35678888876521 000000 000 000 011122222 34455
Q ss_pred EEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 178 CSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
+..-.++.|.+.+...- .++.+++..+........... .--..++++|+++.|++.+.
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~------~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI------DVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC------CCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcC------CceEEEEEcCCCCEEEEECC
Confidence 55445666666654332 345565543321110000000 12357999999999999875
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00086 Score=72.60 Aligned_cols=109 Identities=8% Similarity=-0.106 Sum_probs=83.3
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEc
Q 004298 27 AEWNPEKDLLAMATE-----DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDV 90 (763)
Q Consensus 27 l~~sP~~~lLA~~s~-----Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdv 90 (763)
....|+++.+.+... ++.|.+++. +++.+..+..+.... ++++|||+++.++. .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 344789988887765 678999999 667777787665555 99999999888876 3678999999
Q ss_pred cCCeEEEEecccC-------CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKLLRSLKSHT-------VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~~~~l~~h~-------~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+++.+.++.... .....+.++|||+++..+.. ..++.+.++|...
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~----~~~~~VsVID~~t 169 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF----SPAPAVGVVDLEG 169 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC----SSSCEEEEEETTT
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc----CCCCeEEEEECCC
Confidence 9999998875321 24667999999997766530 0257888998875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0078 Score=65.91 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=112.2
Q ss_pred CCCCEEEE-EeCCCeEEEEEccCc----eE-EEec-------CC-CcEEEEEEccCCCEEEEEEcC------CcEEEEEc
Q 004298 31 PEKDLLAM-ATEDSKILLHRFNWQ----RL-WTIS-------PG-KSVTSLCWRPDGKAIAVGLED------GTITLHDV 90 (763)
Q Consensus 31 P~~~lLA~-~s~Dg~V~v~~l~~~----~v-~~~~-------~~-~~V~~l~wspDG~~Lasg~~D------g~V~lwdv 90 (763)
++++++.+ +-.++.|.|++.... ++ ..+. .+ .....+...||| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77877665 556688999998422 23 3331 23 256678889999 66665555 78999999
Q ss_pred cCCeEEEEecccCC---ceeEEEeecCCCceeccCCC----------CC---cccCCceeecCCCCCCCCCCCccc-CCc
Q 004298 91 ENGKLLRSLKSHTV---AVVCLNWEEDAQPSKNDFGN----------IP---TYEDRTSRFFPPAPRIPQMPGLVS-GDT 153 (763)
Q Consensus 91 e~g~~~~~l~~h~~---~V~~l~ws~~~~~l~s~s~~----------~~---~~~d~~i~~wd~~~~~~~l~~~~s-~~~ 153 (763)
++++++.++..... --..+.|+|+++.+++.... .. .....++.+||.... ++..... +.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~~tI~vg~- 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRIHSLTLGE- 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEEEEEESCT-
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--cEeeEEecCC-
Confidence 99999999863222 23458899999987776310 00 023688999988752 1110000 00
Q ss_pred ccccCCcccccceecccCCCeeEEEEEc------CCCcEEEEEcCc--eee-eeeeeccccc--ccccCCCCCceeeecc
Q 004298 154 GFTDDSEDSFRELANSSHQRFSILCSGD------KDGSICFNIFGI--FPI-GKINIHKFHV--AIPNADEQGTCRLLNA 222 (763)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~sgs------~DG~I~lw~~~~--~~i-g~~~i~~~~~--~~~s~~~~~~~~l~~~ 222 (763)
....-..+.+.+++++++..++. .+++|.+|.++. +.. ..+++..... ...... ....--..
T Consensus 249 -----~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~--~~f~~~~~ 321 (462)
T 2ece_A 249 -----ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL--KPFKAVPP 321 (462)
T ss_dssp -----TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGG--GGGTEECC
T ss_pred -----CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccc--cccccCCC
Confidence 00111123344567766665555 566887776542 111 1111111000 000000 00000012
Q ss_pred ceeeEEecCCCCEEEEEeecC
Q 004298 223 SIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 223 ~I~~v~~SpDg~~Llv~~~d~ 243 (763)
....+.+|+||++|+++..+.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTT
T ss_pred ceeEEEECCCCCEEEEEeCCC
Confidence 356789999999999987753
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0038 Score=68.58 Aligned_cols=105 Identities=8% Similarity=-0.111 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCC-----CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEccCCe
Q 004298 31 PEKDLLAMATED-----SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDVENGK 94 (763)
Q Consensus 31 P~~~lLA~~s~D-----g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdve~g~ 94 (763)
|+++.+.++... +.|.+++. +++.+..+.-+..- .++++|||+++.++. .++.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 566666555442 68999999 67777888766666 999999999988886 47799999999999
Q ss_pred EEEEeccc-------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRSLKSH-------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~l~~h-------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+.++... ......+.++|||+++..+.. ..++.+.+.|...
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~----~~~~~VsVID~~t 209 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF----SPAPAVGVVDLEG 209 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC----SSSCEEEEEETTT
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEec----CCCCeEEEEECCC
Confidence 99887532 134567899999998876641 0256788888765
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.052 Score=55.09 Aligned_cols=204 Identities=12% Similarity=0.111 Sum_probs=114.5
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEecCC--CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe---E
Q 004298 22 SQIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTISPG--KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK---L 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~~~~--~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~---~ 95 (763)
..+..++|+|+++ +.|+...++.|...+..++.+..+.-+ .....|++.++|.++++.-.++.+.++++.... .
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 4599999999876 555577778888888887666666422 468899999999876665577889999886433 2
Q ss_pred EEEec------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc-CCcccccceec
Q 004298 96 LRSLK------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD-DSEDSFRELAN 168 (763)
Q Consensus 96 ~~~l~------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~-~~~~~~~~~~~ 168 (763)
+.... ..+.....++|.|.+..+..+. +.....+|..........-+...+..+.. ..-..+..+..
T Consensus 107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~------E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK------EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE------ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred eeeeccccccccccCCcceEEEeCCCCEEEEEE------CcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 33332 1234568999999886554443 22222333222100000000000000000 00001112222
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
.+ ..+++++..+.+..+..++........+.+....... ...+ ..-..++|.++|+ |+++++.
T Consensus 181 dp-~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l-----~~~~----~qpEGia~d~~G~-lyIvsE~ 243 (255)
T 3qqz_A 181 NQ-QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL-----SHNI----KQAEGVAMDASGN-IYIVSEP 243 (255)
T ss_dssp ET-TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC-----SSCC----CSEEEEEECTTCC-EEEEETT
T ss_pred cC-CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc-----cccc----CCCCeeEECCCCC-EEEEcCC
Confidence 22 4457888888888888887666666665544211000 0000 1134689999996 7777654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0051 Score=66.50 Aligned_cols=107 Identities=6% Similarity=-0.156 Sum_probs=78.3
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEcc
Q 004298 28 EWNPEKDLLAMATE--DS---KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDVE 91 (763)
Q Consensus 28 ~~sP~~~lLA~~s~--Dg---~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdve 91 (763)
...|+++.+.++.. .+ .|.+|+. +++.+..+..+... .++++|||+++.++. .++.|.+||..
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 34577877666553 22 7899998 66666677766555 999999999999986 36789999999
Q ss_pred CCeEEEEeccc-------CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 92 NGKLLRSLKSH-------TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ~g~~~~~l~~h-------~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+++.+..+... ......+.|+|+|+++..++.. .++.+.++| ..
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----~~~~v~viD-~t 156 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----AGPAVGLVV-QG 156 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----CCCeEEEEE-CC
Confidence 99888877532 1234589999999988776410 146788888 54
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.01 Score=64.95 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCEEEEEeCC------CeEEEEEc-cCceEEEecCC----CcEEEEEEccCCCEEEEEE------------
Q 004298 24 IKIAEWNPEKDLLAMATED------SKILLHRF-NWQRLWTISPG----KSVTSLCWRPDGKAIAVGL------------ 80 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D------g~V~v~~l-~~~~v~~~~~~----~~V~~l~wspDG~~Lasg~------------ 80 (763)
-..+.+.|+| +++++..+ |.|.+++. +++.+-++..+ ..-..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 3556789999 66665554 78999998 46666666522 2244688999999888874
Q ss_pred -------cCCcEEEEEccCCeEEEEecccC--CceeEEEe--ecCCCceeccC
Q 004298 81 -------EDGTITLHDVENGKLLRSLKSHT--VAVVCLNW--EEDAQPSKNDF 122 (763)
Q Consensus 81 -------~Dg~V~lwdve~g~~~~~l~~h~--~~V~~l~w--s~~~~~l~s~s 122 (763)
.+.+|.+||+.+++.+.++.... .....+.| +|++++...+.
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 37899999999999888887531 24455655 99998766544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.17 Score=50.83 Aligned_cols=204 Identities=11% Similarity=-0.039 Sum_probs=112.4
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDS--KILLHRF-NWQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITL 87 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~l 87 (763)
-++.|+.. .-...+.|++ +.+..+.+.+| .|.++++ +++.+-.+.-..........++| +.....+.++.+.+
T Consensus 13 ~~~phd~~--~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 13 KRYPHDTT--AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEECCTT--CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEcCCCCc--cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 33445433 4578899997 56666666654 8999999 67666666544444333333334 45555668999999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCcccccCCcccccce
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDTGFTDDSEDSFREL 166 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~~~~~~~~~~~~~~ 166 (763)
||.++.+.+.++...... ..++ +++..+..+. .++.+.++|..+.. ...... +..+.. -..++++
T Consensus 90 ~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSd------gs~~l~~iDp~t~~--~~~~I~V~~~g~~---~~~lNeL 155 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEG-WALT--SDDSHLYMSD------GTAVIRKLDPDTLQ--QVGSIKVTAGGRP---LDNLNEL 155 (243)
T ss_dssp EETTTTEEEEEEECSSCC-CEEE--ECSSCEEEEC------SSSEEEEECTTTCC--EEEEEECEETTEE---CCCEEEE
T ss_pred EECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEEC------CCCeEEEEeCCCCe--EEEEEEEccCCcc---cccceee
Confidence 999999999998753222 3443 4565554443 46778888876521 000000 000000 0011122
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccC-CCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNA-DEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~-~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
.+ .++.+.+..-.+..|.+-+... ..++.+++..+....... .... .--..++++|+++.|++...
T Consensus 156 e~---~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~------~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EW---VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN------DVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE---ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS------SCEEEEEEETTTTEEEEEET
T ss_pred EE---eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcC------CceEEEEEcCCCCEEEEECC
Confidence 21 1344555544455666655433 245666655432221100 0000 12357999999999998865
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.56 Score=48.36 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCC--cEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG--TITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg--~V~lwdve~g~~~~ 97 (763)
.....++|+|+++++++...++.|..|+.+++....+..+..+.++++.|||+++++..... .|..++..+|+...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45788999999998877778899988888776554445566789999999999666554433 46667777787643
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=8.3e-05 Score=80.53 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCC--cEE-EEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGK--SVT-SLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--~V~-~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
+.+..+.+++.++++++.||.|+.|+. +|+.+|...... .+. +.... ++..+++|+.||.|+.||.++|+.+.++
T Consensus 40 ~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 40 VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------
T ss_pred ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 444445567778888889999999999 788888875321 110 01111 3457788889999999999999998887
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..+. ...++|++..++.++ .++.+..||...
T Consensus 119 ~~~~----~~~~~p~~~~v~~~~------~dg~v~a~d~~t 149 (369)
T 2hz6_A 119 SSAF----ADSLSPSTSLLYLGR------TEYTITMYDTKT 149 (369)
T ss_dssp ------------------EEEEE------EEEEEECCCSSS
T ss_pred cCCC----cccccccCCEEEEEe------cCCEEEEEECCC
Confidence 6543 234456777777776 688999999865
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.026 Score=58.59 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
+.++...+++. +.+++.++.|..++..++.+|.... ...+.++...++|.+.+.. +.|..+| .+|+.+..+...
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~ 213 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG 213 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC
Confidence 45556666666 4457778889999988888888763 4456677777888755443 8888999 788887777665
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
...+.++...+++...+.. .++.+..++.
T Consensus 214 ~~~~~~~~~~~~g~l~v~t-------~~~gl~~~~~ 242 (330)
T 3hxj_A 214 YWTVTRPAISEDGTIYVTS-------LDGHLYAINP 242 (330)
T ss_dssp SCCCSCCEECTTSCEEEEE-------TTTEEEEECT
T ss_pred CcceeceEECCCCeEEEEc-------CCCeEEEECC
Confidence 5678888888887655544 2445555553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.053 Score=55.05 Aligned_cols=204 Identities=10% Similarity=-0.004 Sum_probs=110.2
Q ss_pred eEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCC-CEEEEEEcCCcEEEEE
Q 004298 12 FQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDG-KAIAVGLEDGTITLHD 89 (763)
Q Consensus 12 ~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG-~~Lasg~~Dg~V~lwd 89 (763)
-++.|+.. .-...+.|+ ++.+..+.+.+|.|.++++ +++.+..+ -..........++| +.....+.++.+.+||
T Consensus 47 ~~~phd~~--~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 47 REYPHATN--AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEECCTT--CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEcCCCc--cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 34444433 235788888 4677788888899999998 66655555 33333332233344 4455566899999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc-CCcccccCCcccccceec
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS-GDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s-~~~~~~~~~~~~~~~~~~ 168 (763)
.++.+.+.++... ..-..++ +++..+..+. .++++.++|..+. +...... +..... -..++.+.+
T Consensus 123 ~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSd------Gs~~l~~iDp~T~--~v~~~I~V~~~g~~---v~~lNeLe~ 188 (268)
T 3nok_A 123 GMPPQRERTTRYS-GEGWGLC--YWNGKLVRSD------GGTMLTFHEPDGF--ALVGAVQVKLRGQP---VELINELEC 188 (268)
T ss_dssp TTTTEEEEEEECS-SCCCCEE--EETTEEEEEC------SSSEEEEECTTTC--CEEEEEECEETTEE---CCCEEEEEE
T ss_pred CCcCcEEEEEeCC-CceeEEe--cCCCEEEEEC------CCCEEEEEcCCCC--eEEEEEEeCCCCcc---cccccccEE
Confidence 9999999998753 2223333 4566555543 4678888887652 1000000 000000 001122222
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
. ++.+.+..-.++.|.+-+...- .++.+++..+.........+. ..--..++++|+++.|++...
T Consensus 189 ~---dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~-----~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 189 A---NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP-----EAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp E---TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT-----TCCEEEEEECTTTCCEEEEET
T ss_pred e---CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCc-----CCceEEEEEcCCCCEEEEeCC
Confidence 2 3345554445566666554332 345555443211111000000 012357999999999998754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0066 Score=72.04 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=70.9
Q ss_pred CeEEEEEc-CCCCEEEEEeCC-C----eEEEEEccCc-eEEEecCCCcEEEEEEccCCCEEEEEEcC-----CcEEEEEc
Q 004298 23 QIKIAEWN-PEKDLLAMATED-S----KILLHRFNWQ-RLWTISPGKSVTSLCWRPDGKAIAVGLED-----GTITLHDV 90 (763)
Q Consensus 23 ~V~~l~~s-P~~~lLA~~s~D-g----~V~v~~l~~~-~v~~~~~~~~V~~l~wspDG~~Lasg~~D-----g~V~lwdv 90 (763)
.+...+|| |||++||.+... | +|+++++.+. ....-.-.....+++|+|||+.|+....| ..|+.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 47789999 999999865532 2 4999998544 31100000113468999999988887765 25888888
Q ss_pred cCCeE--EEEec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKL--LRSLK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~--~~~l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++.. ...+. ........+.|+|||++++..+... ....+.++|...
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~l~~~d~~~ 304 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---ETAEVHLLDLRK 304 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---SCEEEEEEESSS
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---CCceEEEEECCC
Confidence 77641 22222 2223466789999999776543110 233455566543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0083 Score=64.62 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=65.2
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEE-EEEE-cCCcEEEEEccCCe
Q 004298 27 AEWNPEKDLLAMATE---------DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAI-AVGL-EDGTITLHDVENGK 94 (763)
Q Consensus 27 l~~sP~~~lLA~~s~---------Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~L-asg~-~Dg~V~lwdve~g~ 94 (763)
++++|+++.+.++.. ++.+.++++ +++.+..+.-+....+++|+|||+.+ ++.. .++.|.++|+.+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 789999988776543 235679999 66777777766678999999999854 4455 59999999999999
Q ss_pred EEEEecccCCceeEEEee
Q 004298 95 LLRSLKSHTVAVVCLNWE 112 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws 112 (763)
.+.++... .....+++.
T Consensus 349 vv~~I~vg-~~P~~i~~~ 365 (368)
T 1mda_H 349 DQSSVELD-KGPESLSVQ 365 (368)
T ss_dssp EEEECCCC-SCCCEEECC
T ss_pred EEEEEECC-CCCCEEEee
Confidence 99999764 344555554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.081 Score=61.92 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=57.2
Q ss_pred EEEEcCCCCEEEEEeCCCe-------------------EEEEEc-cCceEEEecCC----------CcEEEEEEccCCC-
Q 004298 26 IAEWNPEKDLLAMATEDSK-------------------ILLHRF-NWQRLWTISPG----------KSVTSLCWRPDGK- 74 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~-------------------V~v~~l-~~~~v~~~~~~----------~~V~~l~wspDG~- 74 (763)
.++++|+.+++.+++.++. |..++. +|+.+|.+... ..+.......+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5789999999999888764 899998 89999988621 1122223344776
Q ss_pred --EEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 75 --AIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 75 --~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
.++++..+|.++++|.++|+.+...
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccc
Confidence 7899999999999999999998544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.013 Score=68.86 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-ceeEEEeecCCCc
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVVCLNWEEDAQP 117 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~~l~ws~~~~~ 117 (763)
+|.|..|++ +|+.+|.+..+..+..-.+...|.++++|+.||.++.||.++|+.+.+++.... ...-+.|..+|+.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence 377999999 789999998665555556777888999999999999999999999998875432 2245778888864
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.02 Score=61.57 Aligned_cols=92 Identities=5% Similarity=-0.170 Sum_probs=70.0
Q ss_pred eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE----------cCCcEEEEEccCCeEEEEecccC-------Cc
Q 004298 44 KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL----------EDGTITLHDVENGKLLRSLKSHT-------VA 105 (763)
Q Consensus 44 ~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~----------~Dg~V~lwdve~g~~~~~l~~h~-------~~ 105 (763)
+|.+++. +++.+-++.-+..- .+.++|||+++.++. .++.|.+||..+++.+.++.... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 8889998 66777777755544 899999999999886 37899999999999999986431 24
Q ss_pred eeEEEeecCCCceeccCCCCCcccCCceee--cCCCC
Q 004298 106 VVCLNWEEDAQPSKNDFGNIPTYEDRTSRF--FPPAP 140 (763)
Q Consensus 106 V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~--wd~~~ 140 (763)
...+.++|||+++..+... ....+.+ +|...
T Consensus 126 P~~ia~SpDGk~lyVan~~----~~~~v~V~~iD~~t 158 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFG----SSAAAGLSVPGASD 158 (368)
T ss_dssp TTSEEECTTSSCEEEEECS----SSCEEEEEETTTEE
T ss_pred cceEEEcCCCCEEEEEccC----CCCeEEEEEEchhh
Confidence 6789999999988766410 1345666 77743
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.089 Score=62.26 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=62.1
Q ss_pred EEEEEcCCCCEEEEEeCC-----CeEEEEEccC-c----eEEEecCCCcEEEEEEccCCCEEEEEEc---CCcEEEEEcc
Q 004298 25 KIAEWNPEKDLLAMATED-----SKILLHRFNW-Q----RLWTISPGKSVTSLCWRPDGKAIAVGLE---DGTITLHDVE 91 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~D-----g~V~v~~l~~-~----~v~~~~~~~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve 91 (763)
..++|+||++.|+....+ ..|++|++.+ + .++.-........+.|+|||++|+.... ...|+++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 357899999988877765 3578888743 2 3343333445678999999999988763 3468889988
Q ss_pred CC--eE-EEEec-ccCCceeEEEeecCCCceecc
Q 004298 92 NG--KL-LRSLK-SHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 92 ~g--~~-~~~l~-~h~~~V~~l~ws~~~~~l~s~ 121 (763)
++ +. +..+. ........+.|+..+.++..+
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t 337 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILT 337 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEe
Confidence 75 33 13333 334455666665444444443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.015 Score=68.02 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=61.3
Q ss_pred CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-CceeEEEeecCCCce
Q 004298 43 SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT-VAVVCLNWEEDAQPS 118 (763)
Q Consensus 43 g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~-~~V~~l~ws~~~~~l 118 (763)
|.|..|++ +++.+|.+.++..+.+..+..+|..+++|+.||.+++||.++|+.+.++.... ....-+.|..+|+..
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 78999999 78999999877666666777888899999999999999999999999987533 233456677787643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=1.6 Score=43.74 Aligned_cols=95 Identities=9% Similarity=-0.047 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEEccCceEEEec-CC-CcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEEe
Q 004298 24 IKIAEWNPEKDLLA-MATEDSKILLHRFNWQRLWTIS-PG-KSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 24 V~~l~~sP~~~lLA-~~s~Dg~V~v~~l~~~~v~~~~-~~-~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~l 99 (763)
+..++|+|++..|. +-..++.|.++++++..+..+. .+ ....+++++|++..|.++. ..+.|.+++.........+
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence 67899999765544 4455789999999776544433 22 5789999999876665554 6788999998643222222
Q ss_pred cccCCceeEEEeecCCCce
Q 004298 100 KSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l 118 (763)
.........++++|++..+
T Consensus 118 ~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 118 DTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp CSSCSSEEEEEEETTTTEE
T ss_pred ECCCCCccEEEEeeCCCEE
Confidence 2222467899999965443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.017 Score=65.45 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEccCc-------------eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRFNWQ-------------RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~-------------~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
..++.++|||+++.+++ .+.+|.++++... .+..+..|.....++|+|||....+..-|+.|..||
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 358 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEE
Confidence 67899999999777655 5688999999533 345666788899999999994444555899999999
Q ss_pred ccC----------CeEEEEecccCCce-----eEEEeecCCCceeccC
Q 004298 90 VEN----------GKLLRSLKSHTVAV-----VCLNWEEDAQPSKNDF 122 (763)
Q Consensus 90 ve~----------g~~~~~l~~h~~~V-----~~l~ws~~~~~l~s~s 122 (763)
+++ .+.+.++..|..+- ..+..+|||+++.++.
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred hhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 987 66788887765432 1224578999887764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.54 Score=48.38 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCeEEEEEccCceEEEecC-CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEe
Q 004298 33 KDLLAMATEDSKILLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l~~~~v~~~~~-~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~w 111 (763)
+..+.+++.++.|..++..++.+|.... ...+.++...++|. +.+|+.++.|..+|.. |+.+..+......+.++..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 5566778888999999988888888763 34456677777887 5667788999999988 8887777665566777777
Q ss_pred ecCCCceec
Q 004298 112 EEDAQPSKN 120 (763)
Q Consensus 112 s~~~~~l~s 120 (763)
.+++...+.
T Consensus 185 d~~g~l~v~ 193 (330)
T 3hxj_A 185 GKDGTIYFG 193 (330)
T ss_dssp CTTCCEEEE
T ss_pred cCCCEEEEE
Confidence 777765544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.65 Score=46.63 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEccCceEEEe-cCC-CcEEEEEEccCCCEEEEEEc---CCcEEEEEccCCeEE
Q 004298 23 QIKIAEWNPEKD-LLAMATEDSKILLHRFNWQRLWTI-SPG-KSVTSLCWRPDGKAIAVGLE---DGTITLHDVENGKLL 96 (763)
Q Consensus 23 ~V~~l~~sP~~~-lLA~~s~Dg~V~v~~l~~~~v~~~-~~~-~~V~~l~wspDG~~Lasg~~---Dg~V~lwdve~g~~~ 96 (763)
....++++|++. +.++-...+.|.++++++.....+ ..+ .....++++|++..|.++.. .+.|..+++. |+..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~ 158 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNR 158 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCc
Confidence 468899999765 444455568899999976533222 222 56789999997666655553 4688888875 4333
Q ss_pred EEec-ccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCC
Q 004298 97 RSLK-SHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 97 ~~l~-~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~ 139 (763)
..+. ..-.....++|++++..+. +.. ..+.+..++..
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~------~~~~I~~~~~~ 197 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDA------GTHRAECLNPA 197 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEEC------CCCEEEEEecC
Confidence 3332 2234678899999876443 333 45677777654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.96 E-value=1.2 Score=48.52 Aligned_cols=111 Identities=7% Similarity=0.041 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCEEEEEeC-CC----eEEEEEccCceE--EEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATE-DS----KILLHRFNWQRL--WTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg----~V~v~~l~~~~v--~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
....++|+|+++.|.++.. ++ .+.++..++... ..+.......+++++| +|.++++-..++.|..++..++.
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 4678999999995555543 22 344444443221 2222234467889999 77777777788999999988766
Q ss_pred EEEEecc-cCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCC
Q 004298 95 LLRSLKS-HTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 95 ~~~~l~~-h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
....... .......++|+|+++. .++.. ..+.|..++..
T Consensus 260 ~~~~~~~~~~~~P~gia~~pdG~~lyv~d~------~~~~I~~~~~d 300 (430)
T 3tc9_A 260 TTPLFTIQDSGWEFHIQFHPSGNYAYIVVV------NQHYILRSDYD 300 (430)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEET------TTTEEEEEEEE
T ss_pred EEEEEEcCCCCcceeEEEcCCCCEEEEEEC------CCCEEEEEeCC
Confidence 5322221 1235788999999984 34433 45666666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.13 Score=60.15 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=78.9
Q ss_pred EEEcCCC---CEEEEEeCCCeEEEEEc-cCceEEEecCC------------CcE------------------------EE
Q 004298 27 AEWNPEK---DLLAMATEDSKILLHRF-NWQRLWTISPG------------KSV------------------------TS 66 (763)
Q Consensus 27 l~~sP~~---~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~------------~~V------------------------~~ 66 (763)
+....+| +.++.++.+|.|++++. +|+.+|.+..+ ..+ ..
T Consensus 318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~ 397 (677)
T 1kb0_A 318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP 397 (677)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence 3444467 67888999999999998 89999987521 111 15
Q ss_pred EEEccCCCEEEEEEcC-------------------------------------------CcEEEEEccCCeEEEEecccC
Q 004298 67 LCWRPDGKAIAVGLED-------------------------------------------GTITLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 67 l~wspDG~~Lasg~~D-------------------------------------------g~V~lwdve~g~~~~~l~~h~ 103 (763)
++++|++.++.++..+ |.|..||+.+|+.+.++.. .
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~ 476 (677)
T 1kb0_A 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-V 476 (677)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-S
T ss_pred ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-C
Confidence 6889998888876542 7899999999999888763 3
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++....+..++..+..++ .|+.++.||..+
T Consensus 477 ~~~~~g~~~~~g~~v~~g~------~dg~l~a~D~~t 507 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGT------ADGRLVAYHAAT 507 (677)
T ss_dssp SSCCCCEEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred CCCcCcceEeCCCEEEEEC------CCCcEEEEECCC
Confidence 4444555566666666666 789999999875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.88 Score=48.12 Aligned_cols=68 Identities=7% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEE-EEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 32 EKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTS-LCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 32 ~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~-l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
++..+.+++.++.|..++. +|+.+|....+..+.+ ... ++..+.+++.+|.|..+|.++|+.+.++..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 4567778889999999998 7999999875433221 111 245788889999999999999999887754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.42 Score=55.55 Aligned_cols=75 Identities=28% Similarity=0.370 Sum_probs=57.9
Q ss_pred EEEEcCCCCEEEEEeCCCe-------------------EEEEEc-cCceEEEecCC----------CcEEEEEEccCCC-
Q 004298 26 IAEWNPEKDLLAMATEDSK-------------------ILLHRF-NWQRLWTISPG----------KSVTSLCWRPDGK- 74 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg~-------------------V~v~~l-~~~~v~~~~~~----------~~V~~l~wspDG~- 74 (763)
.++++|+.+++.+++.++. |..++. +|+.+|.+... ..........||+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 4788998899888887763 888887 89999998632 2233334445886
Q ss_pred --EEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 75 --AIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 75 --~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
.+++++.+|.++++|.++|+.+...+
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEecccc
Confidence 78999999999999999999986554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.45 Score=49.41 Aligned_cols=96 Identities=5% Similarity=0.012 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--C-------------------CCcEEEEEEcc-CCCEEEEEEc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--P-------------------GKSVTSLCWRP-DGKAIAVGLE 81 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~-------------------~~~V~~l~wsp-DG~~Lasg~~ 81 (763)
...++|+|+++++.++..++.|..|+..+..+..+. . ...+.++++.| +|+ |.++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 356899999997888888999999988654443321 1 13578999998 665 555554
Q ss_pred CCcEEEEEccCCeEEEEecc-----cCCceeEEEeec-CCCceecc
Q 004298 82 DGTITLHDVENGKLLRSLKS-----HTVAVVCLNWEE-DAQPSKND 121 (763)
Q Consensus 82 Dg~V~lwdve~g~~~~~l~~-----h~~~V~~l~ws~-~~~~l~s~ 121 (763)
.+.|..+|..+++. ..+.. .......+.+.+ +|...++.
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d 144 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTD 144 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEEC
Confidence 55588888775543 22211 113467889999 88766654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=1.8 Score=44.76 Aligned_cols=110 Identities=10% Similarity=-0.039 Sum_probs=69.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec---CC---CcEEEEEEcc-CCCEEEEEEc-------------
Q 004298 23 QIKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS---PG---KSVTSLCWRP-DGKAIAVGLE------------- 81 (763)
Q Consensus 23 ~V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~---~~V~~l~wsp-DG~~Lasg~~------------- 81 (763)
.+..++++| ++++++ +...+.|..++..+..+..+. .+ .....+++.| +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 477899998 565554 544555777777544332221 11 3578899999 9986665432
Q ss_pred ----CCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceecc-CCCCCcccCCceeecCCCC
Q 004298 82 ----DGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKND-FGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 82 ----Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~-s~~~~~~~d~~i~~wd~~~ 140 (763)
+|.|..||..+++....... -.....++|++++..+..+ . ..+.+..++...
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~ 216 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEF------LSHQIVKYWLEG 216 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEG------GGTEEEEEESSS
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeC------CCCeEEEEECCC
Confidence 36788889877765433221 2345679999998754333 2 356777776553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.43 Score=50.58 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-cCCceeEEE
Q 004298 33 KDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS-HTVAVVCLN 110 (763)
Q Consensus 33 ~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~-h~~~V~~l~ 110 (763)
+..+.+++.++.+..++. +|+.+|....+. ..++.. ++..+.++..+|.+..+|..+|+.+..... ....+....
T Consensus 239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 315 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV 315 (376)
T ss_dssp TTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred CCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence 466777888999999998 899999987543 333333 567888889999999999999998877652 122222222
Q ss_pred eecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 111 WEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 111 ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. +..+..++ .++.+..+|..+
T Consensus 316 ~~--~~~l~v~~------~~g~l~~~d~~t 337 (376)
T 3q7m_A 316 LY--NGNLVVGD------SEGYLHWINVED 337 (376)
T ss_dssp EE--TTEEEEEC------TTSEEEEEETTT
T ss_pred EE--CCEEEEEe------CCCeEEEEECCC
Confidence 22 23344444 577788887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.39 Score=48.86 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=70.5
Q ss_pred CCCEEEE-EeCCCeEEEEEc-cCceEEEecCC-CcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC-----
Q 004298 32 EKDLLAM-ATEDSKILLHRF-NWQRLWTISPG-KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT----- 103 (763)
Q Consensus 32 ~~~lLA~-~s~Dg~V~v~~l-~~~~v~~~~~~-~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~----- 103 (763)
+++.+.. .-.++.+.+++. +.+.+..+..+ .. ....++||+.+.++..++.|.++|.++.+.+.++....
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 3545544 445789999998 67777777655 32 34466799988888889999999999999988876422
Q ss_pred CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..++.+.|. ++...+... .++.+.+.|..+
T Consensus 152 ~~~nele~~-dg~lyvn~~------~~~~V~vID~~t 181 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWANIW------QTDCIARISAKD 181 (266)
T ss_dssp CCEEEEEEE-TTEEEEEET------TSSEEEEEETTT
T ss_pred ccceeEEEE-CCEEEEecC------CCCeEEEEECCC
Confidence 136678888 675555443 566777777764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=93.54 E-value=1.1 Score=46.89 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=69.2
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEEccCceEEEec-C-----C---CcEEEEEE---ccCCCEEEEEEc----------
Q 004298 25 KIAEWNPEKDLLAMAT-EDSKILLHRFNWQRLWTIS-P-----G---KSVTSLCW---RPDGKAIAVGLE---------- 81 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s-~Dg~V~v~~l~~~~v~~~~-~-----~---~~V~~l~w---spDG~~Lasg~~---------- 81 (763)
.+++|++....+..++ ..++|..|+..++.+..+. + + ..+.+|.| .|+|+++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4689998666555555 7899999999755444442 1 1 14689999 699888886542
Q ss_pred ---CCcEEEEEcc---CCeEEEEecc--c-----------CCceeEEEeecCCCceeccC
Q 004298 82 ---DGTITLHDVE---NGKLLRSLKS--H-----------TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 82 ---Dg~V~lwdve---~g~~~~~l~~--h-----------~~~V~~l~ws~~~~~l~s~s 122 (763)
+..|..+|+. +++.+....- . ......|+..++|...++++
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 6779999998 8877665431 1 12477889999998777665
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.47 E-value=1.3 Score=47.78 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCce---------------EEEec-----CCCcEEEEEEcc---CCCEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQR---------------LWTIS-----PGKSVTSLCWRP---DGKAIAVG 79 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~---------------v~~~~-----~~~~V~~l~wsp---DG~~Lasg 79 (763)
.|..+..||+|++||..+ +..|.|-.+++.. -+.+. +...|..+.|+| .|..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 588899999999999886 5578888886321 23332 245799999999 45689999
Q ss_pred EcCCcEEEEEccCC--eEEEEec---------ccCCceeEEEeecCCCce
Q 004298 80 LEDGTITLHDVENG--KLLRSLK---------SHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 80 ~~Dg~V~lwdve~g--~~~~~l~---------~h~~~V~~l~ws~~~~~l 118 (763)
..|+.|++||+... +.. .++ .....|.+++|.+++-.+
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEE
Confidence 99999999999752 122 222 223578899999876433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.58 Score=47.33 Aligned_cols=108 Identities=12% Similarity=0.092 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.......++++.|...+ .++.+.+|+. +.+.+.++..+..-..+ .+||+.|..+..++.|.++|.++.+.+.++..
T Consensus 87 ~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 87 YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 43333444565555554 5788999998 77788888754432334 46888888877788899999999999988765
Q ss_pred cC-----CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 102 HT-----VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 102 h~-----~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.. ..++-+.|. +|+..+.. +.+..|.+.|..+
T Consensus 165 ~~~g~~~~~lNELe~~-~G~lyan~------w~~~~I~vIDp~t 201 (262)
T 3nol_A 165 TAHGEELPELNELEWV-DGEIFANV------WQTNKIVRIDPET 201 (262)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEE------TTSSEEEEECTTT
T ss_pred ccCCccccccceeEEE-CCEEEEEE------ccCCeEEEEECCC
Confidence 22 234557787 67655544 2566777777654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.52 Score=51.60 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=84.7
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc-CC----cEEEEEccCCeEE
Q 004298 24 IKIAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DG----TITLHDVENGKLL 96 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg----~V~lwdve~g~~~ 96 (763)
...++|+| +...|.++...+.|..++++++.+..+. .......++|+++|+.|.++.. ++ .+..++. ++...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence 46789998 3544555554478888888776665554 4556889999999996666654 22 2333443 33221
Q ss_pred --EEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCCCCCC-CCCCcccCCcccccCCcccccceecccCC
Q 004298 97 --RSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPAPRIP-QMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 97 --~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~-~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
..+.. ......++++| ++...++.. ..+.+..++...... .+.. .+... ......+++
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~--~~~~~---------~P~gia~~p 279 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFT--IQDSG---------WEFHIQFHP 279 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEE--CSSSS---------CCEEEEECT
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEE--cCCCC---------cceeEEEcC
Confidence 22221 24467788999 666555543 456677776543210 0000 00000 011233456
Q ss_pred Cee-EEEEEcCCCcEEEEEcC
Q 004298 173 RFS-ILCSGDKDGSICFNIFG 192 (763)
Q Consensus 173 ~~~-~L~sgs~DG~I~lw~~~ 192 (763)
+++ ++++-..++.|..++++
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEeCC
Confidence 666 55665677888887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.76 E-value=12 Score=40.47 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=40.6
Q ss_pred cCCCCEEEEEeCCCeEEEEEcc-Cc--eEEEecC---CCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 30 NPEKDLLAMATEDSKILLHRFN-WQ--RLWTISP---GKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l~-~~--~v~~~~~---~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
+.++.-++++. ++.|+.-+++ .. ++.+..+ -..|..+..+|+|++||..+ +..|.|..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~ 95 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPW 95 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCT
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecC
Confidence 44555554443 4678777774 22 4444442 34678899999999999985 45788888763
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.23 E-value=1.2 Score=45.09 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=70.5
Q ss_pred cCCCCE-EEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC----
Q 004298 30 NPEKDL-LAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT---- 103 (763)
Q Consensus 30 sP~~~l-LA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~---- 103 (763)
.++++. ..+.-.++.+.+|+. +.+.+.++..+..-.+++ +||+.|.++..++.|.++|.++.+.+.++....
T Consensus 102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 102 ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp EECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 334444 444446788999998 677777777544334444 688888888889999999999999998876422
Q ss_pred -CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 -VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 -~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..++-+.|. +|+..+... ....|.+.|..+
T Consensus 180 v~~lNeLe~~-dG~lyanvw------~s~~I~vIDp~T 210 (268)
T 3nok_A 180 VELINELECA-NGVIYANIW------HSSDVLEIDPAT 210 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEET------TCSEEEEECTTT
T ss_pred cccccccEEe-CCEEEEEEC------CCCeEEEEeCCC
Confidence 244667787 666555442 566777777654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.23 Score=56.66 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=56.2
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCc-eeEEEeecCCCcee
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVA-VVCLNWEEDAQPSK 119 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~-V~~l~ws~~~~~l~ 119 (763)
+|.|..|+. +++.+|++..+..+.+......+..+.+++.||.++.+|.++|+.+.+++..... -.-+.+..+++..+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 478999998 7889999876554444334445677888999999999999999999988753221 12344667776444
Q ss_pred c
Q 004298 120 N 120 (763)
Q Consensus 120 s 120 (763)
.
T Consensus 523 ~ 523 (571)
T 2ad6_A 523 G 523 (571)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=92.06 E-value=0.23 Score=56.80 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce-eEEEeecCCCc
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV-VCLNWEEDAQP 117 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V-~~l~ws~~~~~ 117 (763)
+|.|..|++ +|+.+|+...+..+..-.....|..+++|+.||.++.||.++|+.+.+++.....+ .-+.|..+|+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 578999998 78999998754333222222356678889999999999999999999887633222 23667778863
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=91.96 E-value=1.8 Score=43.30 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=69.6
Q ss_pred EcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccC---
Q 004298 29 WNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT--- 103 (763)
Q Consensus 29 ~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~--- 103 (763)
..+.++.|. +.-.++.+.+|+. +.+.+.++..+..-.+++ +||+.|.++..++.|.++|.++.+.++++....
T Consensus 70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc
Confidence 333444444 4456788999998 677788887554434554 678888888889999999999999998876532
Q ss_pred --CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 104 --VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 104 --~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..++-+.|. +|+..+... .+..|.+.|..+
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw------~s~~I~vIDp~t 179 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVW------LTSRIARIDPAS 179 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEET------TTTEEEEECTTT
T ss_pred ccccceeeEEe-CCEEEEEEC------CCCeEEEEECCC
Confidence 245566776 565544432 455666666654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=16 Score=42.94 Aligned_cols=196 Identities=9% Similarity=0.044 Sum_probs=102.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC---------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP---------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~---------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
..|.++...+++.+.+ ++.++-+.+|+...+.+..+.+ ...|.++...++|.+.+ |..+ -|.+|+..+
T Consensus 215 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp CCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred CeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence 4588888887777655 5544448888886555544432 35699999999987554 4455 588899887
Q ss_pred CeEEEEecc-------cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 93 GKLLRSLKS-------HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 93 g~~~~~l~~-------h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
++..+.... ....|.++...++|..-+.. .++-+..++.....-............. ...+..
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt-------~~~Gl~~~~~~~~~~~~~~~~~~~~~l~---~~~V~~ 361 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT-------YFGGLNYYHPIRNRFKNIRNIPYKNSLS---DNVVSC 361 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE-------SSSCEEEECGGGGSSEEECCCTTSSSCS---CSSEEE
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE-------CCCCeEEeCCCcccceEEcCCCCCCCCC---CCeeEE
Confidence 765443211 23579999988888755443 2344555553321000000000000000 111222
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
+. .+.+++ |-+|+.+|-+..|+...-....+.... .... ..+-...|.+++..++|+.|.+++.+
T Consensus 362 i~--~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~-------~~~~--~~l~~~~v~~i~~d~~g~~lWigt~~ 426 (795)
T 4a2l_A 362 IV--EDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQE-------DESA--RGIGSNNIKAVYVDEKKSLVYIGTHA 426 (795)
T ss_dssp EE--ECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---------------CCSCSCEEEEEEETTTTEEEEEETT
T ss_pred EE--ECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCC-------CCcc--cCCCCccEEEEEEcCCCCEEEEEeCc
Confidence 22 234443 556777777887765432222221000 0000 00112347788888887756666553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=1.2 Score=50.59 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=69.3
Q ss_pred CCC---CEEEEEeCCCeEEEEEc-cCceEEEecCCC--------------cE--------------------------EE
Q 004298 31 PEK---DLLAMATEDSKILLHRF-NWQRLWTISPGK--------------SV--------------------------TS 66 (763)
Q Consensus 31 P~~---~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--------------~V--------------------------~~ 66 (763)
++| ++++.++.+|.+.+++. +|+.+|....+. .+ ..
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 466 35677888999999997 899999875321 11 23
Q ss_pred EEEccCCCEEEEEE-------------------------------------cCCcEEEEEccCCeEEEEecccCCceeEE
Q 004298 67 LCWRPDGKAIAVGL-------------------------------------EDGTITLHDVENGKLLRSLKSHTVAVVCL 109 (763)
Q Consensus 67 l~wspDG~~Lasg~-------------------------------------~Dg~V~lwdve~g~~~~~l~~h~~~V~~l 109 (763)
++++|++..+.++. .+|.|..||..+|+.+.++... ..+...
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~ 469 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGG 469 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSB
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccce
Confidence 67888888777764 2478999999999988877542 222222
Q ss_pred EeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 110 NWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 110 ~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.....+..+..++ .|+.+..||..+
T Consensus 470 ~~~t~gg~v~~g~------~dg~l~a~D~~t 494 (571)
T 2ad6_A 470 TLYTKGGLVWYAT------LDGYLKALDNKD 494 (571)
T ss_dssp CEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred eEEECCCEEEEEc------CCCeEEEEECCC
Confidence 2222344444455 688999998764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=90.20 E-value=5.3 Score=45.96 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=49.6
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEEccCceEEEe----cCCCcEEEEEEccCCCEEEEEE-cC-----CcEEEEEccCC
Q 004298 25 KIAEWNPEKDLLAMATE-DSKILLHRFNWQRLWTI----SPGKSVTSLCWRPDGKAIAVGL-ED-----GTITLHDVENG 93 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~-Dg~V~v~~l~~~~v~~~----~~~~~V~~l~wspDG~~Lasg~-~D-----g~V~lwdve~g 93 (763)
...++.+++.++++|+. ++.+.+|+...+ .|.. .....-.+.+..+||+++++|+ .+ ..+.+||..++
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 34677889999999884 457999998433 2432 2222334566678999999998 44 56899999877
Q ss_pred eEE
Q 004298 94 KLL 96 (763)
Q Consensus 94 ~~~ 96 (763)
+..
T Consensus 325 ~W~ 327 (656)
T 1k3i_A 325 TWT 327 (656)
T ss_dssp EEE
T ss_pred cce
Confidence 644
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=18 Score=42.39 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecC------CCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISP------GKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~------~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
..|.++...+++++|.+|+.++-|.+|+...+++..+.+ ...|.++...++|++.+.. . +.+.+||.++++.
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSF 483 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeE
Confidence 458899998888856678887779999986666665542 4579999999998865544 4 4588899887765
Q ss_pred EEEecc------cCCceeEEEeecCCCceecc
Q 004298 96 LRSLKS------HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 96 ~~~l~~------h~~~V~~l~ws~~~~~l~s~ 121 (763)
.+.... ....|.++...++|...+..
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEe
Confidence 433211 23578999888888765544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=89.29 E-value=14 Score=39.95 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCCEEEEEeCC---C-eEEEEEccCceE--EEecCCCcEEEEEEcc-CCCEEEEEEcCCcEEEEEccCCeE
Q 004298 23 QIKIAEWNPEKDLLAMATED---S-KILLHRFNWQRL--WTISPGKSVTSLCWRP-DGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D---g-~V~v~~l~~~~v--~~~~~~~~V~~l~wsp-DG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
....++|+|+++++++.... . .+......+... ..+........++++| +|.+.++-..++.|+.+|..+|..
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 47889999999955544321 1 233333322211 1122234456789999 776666666788999999887876
Q ss_pred EEEe-ccc-CCceeEEEeecCCCce-eccCCCCCcccCCceeecCC
Q 004298 96 LRSL-KSH-TVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 96 ~~~l-~~h-~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~ 138 (763)
...+ ... ...-..++|+|++..+ ++.. ..+.|..++.
T Consensus 263 ~~~~~~~~~~~~~~~ia~dpdG~~LYvad~------~~~~I~~~~~ 302 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWHPTGDWAYIIYN------GKHCIYRVDY 302 (433)
T ss_dssp EEEEEECSCCSSCEEEEECTTSSEEEEEET------TTTEEEEEEB
T ss_pred EEEEeccCCCCCcccEEEeCCCCEEEEEeC------CCCEEEEEeC
Confidence 3333 211 1233479999999843 4433 4566766554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=89.11 E-value=3.6 Score=44.81 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=61.9
Q ss_pred eEEEEEcCC---CCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC----c-EEEEEccCCe
Q 004298 24 IKIAEWNPE---KDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG----T-ITLHDVENGK 94 (763)
Q Consensus 24 V~~l~~sP~---~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg----~-V~lwdve~g~ 94 (763)
...++|+|+ +.+++ +...+.|+.++.....+..+. ......+++|+|+|+ |.++...+ . +...+...+.
T Consensus 141 P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 457899995 55544 433388988888555565554 445689999999999 55544322 1 3333322221
Q ss_pred E-EEEecccCCceeEEEeec-CCCceeccCCCCCcccCCceeecCCC
Q 004298 95 L-LRSLKSHTVAVVCLNWEE-DAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 95 ~-~~~l~~h~~~V~~l~ws~-~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
. ...+. .......+++.| ++.+.++.. .++.+..++..
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~------~~~~V~~~d~~ 258 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRY------HHAMISSYDPA 258 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBT------TCSEEEEECTT
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEEC------CCCEEEEEECC
Confidence 1 01111 123456677888 565554443 45667777765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=88.88 E-value=21 Score=36.48 Aligned_cols=92 Identities=10% Similarity=-0.111 Sum_probs=53.2
Q ss_pred CCeEEEEEccCceEE-EecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccC---CeE-EEEecccCCceeEEEeecCC
Q 004298 42 DSKILLHRFNWQRLW-TISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVEN---GKL-LRSLKSHTVAVVCLNWEEDA 115 (763)
Q Consensus 42 Dg~V~v~~l~~~~v~-~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~---g~~-~~~l~~h~~~V~~l~ws~~~ 115 (763)
.+.|+..++++.... .+.....+.+++|+++++.|..+. .++.|..++... +.. ...+...-.....+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 456777787554333 334556789999999766555554 678999999875 122 22232222456788887644
Q ss_pred C-ceeccCCCCCcccCCceeecCCC
Q 004298 116 Q-PSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 116 ~-~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
. ...+.. ..+.|.+++..
T Consensus 89 ~~ly~~d~------~~~~I~~~~~~ 107 (316)
T 1ijq_A 89 SNIYWTDS------VLGTVSVADTK 107 (316)
T ss_dssp TEEEEEET------TTTEEEEEETT
T ss_pred CeEEEEEC------CCCEEEEEeCC
Confidence 3 333333 45666666654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=88.69 E-value=0.8 Score=53.21 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce-eEEEeecCCC-ce
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV-VCLNWEEDAQ-PS 118 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V-~~l~ws~~~~-~l 118 (763)
+|.|..|++ +|+.+|....+..+....+...|.++++|+.||.++.||.++|+.+.+++...... .-+.+..+|+ ++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 378999998 88899998866555555566678899999999999999999999998887543211 2344556665 44
Q ss_pred ec
Q 004298 119 KN 120 (763)
Q Consensus 119 ~s 120 (763)
+.
T Consensus 517 a~ 518 (668)
T 1kv9_A 517 AI 518 (668)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=88.09 E-value=4.4 Score=42.08 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+..+..+.+.|++.+++ ++.+|.+++.+.++..-|... .+..+.++.+.|+++.+++|. +|.| .+....|+
T Consensus 204 ~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp SSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS
T ss_pred CCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc
Confidence 45688899999987765 556788776655545566532 123589999999888777665 6766 45555566
Q ss_pred EEEEecc---cCCceeEEEeecCCCceeccCCCCCcccCCceeecC
Q 004298 95 LLRSLKS---HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFP 137 (763)
Q Consensus 95 ~~~~l~~---h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd 137 (763)
.-..+.. ....+.++.|.+++..++.+ .++.+.-++
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G-------~~G~i~~~~ 319 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFILG-------QKGILLRYV 319 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEEC-------STTEEEEEC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEEc-------CCceEEEEc
Confidence 5555542 24578889998777766666 366665554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.97 Score=51.71 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=53.2
Q ss_pred CCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC-ceeEEEeecCCCc
Q 004298 42 DSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV-AVVCLNWEEDAQP 117 (763)
Q Consensus 42 Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~-~V~~l~ws~~~~~ 117 (763)
.|.|..|++ +|+.+|....+..+.+-.....|..+.+|+.||.++.+|.++|+.+.+++.... ...-+.|..+|+.
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 467888898 788899986443322212233567788899999999999999999988865332 2233566677763
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=87.81 E-value=15 Score=37.80 Aligned_cols=110 Identities=6% Similarity=-0.172 Sum_probs=70.2
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEc-C-CcEEEEEccCCeEEEE
Q 004298 24 IKIAEWNPEK-DLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLE-D-GTITLHDVENGKLLRS 98 (763)
Q Consensus 24 V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~-D-g~V~lwdve~g~~~~~ 98 (763)
...+++++.+ ++.++-...+.|.++++++.....+. ......+++..|++..|..+.. . +.|...++. |.....
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~ 157 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS 157 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEE
Confidence 4678888754 55555567789999999776444332 3457889999996665555543 3 678888875 544444
Q ss_pred ec-ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 99 LK-SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 99 l~-~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+. ..-.....++|++++..+..+. ...+.|..++..
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D-----~~~~~I~~~d~d 194 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVN 194 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETT
T ss_pred EEECCCCCceEEEEeccCCEEEEEE-----CCCCeEEEEecC
Confidence 32 2234678999998765543332 135567666654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.14 E-value=33 Score=36.25 Aligned_cols=93 Identities=5% Similarity=-0.109 Sum_probs=55.6
Q ss_pred CCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCce
Q 004298 41 EDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 41 ~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
....|+..++.+..+..+ .....+.+++|.+.+..|... ...+.|..++...+.....+.........+++.+.+..+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence 345677777765544333 334568899999866555544 477889999987655444343323455677777654433
Q ss_pred -eccCCCCCcccCCceeecCCC
Q 004298 119 -KNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 119 -~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.+.. ..+.|.+.+..
T Consensus 174 Y~~d~------~~~~I~~~~~d 189 (386)
T 3v65_B 174 YWTDS------GTSRIEVANLD 189 (386)
T ss_dssp EEEET------TTTEEEECBTT
T ss_pred EEEcC------CCCeEEEEeCC
Confidence 3332 34566666554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.99 E-value=13 Score=37.19 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccC-ceEEEe-----c-----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEcc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNW-QRLWTI-----S-----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVE 91 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~~v~~~-----~-----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve 91 (763)
....+++.+++.++++.-.++.+.+++++. ..++.. . .+....+|+|+|+++.|.++.......||.+.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 466888988887655554667899998832 222311 1 23346899999999888888776666666654
Q ss_pred ---CCeEEEEec-------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 92 ---NGKLLRSLK-------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 92 ---~g~~~~~l~-------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+..++.+. .+-..+..+++.|....+...|. ..+.+..+|...
T Consensus 151 g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-----~s~~L~~~d~~g 204 (255)
T 3qqz_A 151 GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-----ESRALQEVTLVG 204 (255)
T ss_dssp STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-----TTTEEEEECTTC
T ss_pred ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-----CCCeEEEEcCCC
Confidence 121222221 12346789999987654333221 455666666554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=86.26 E-value=6.6 Score=40.97 Aligned_cols=110 Identities=12% Similarity=0.114 Sum_probs=78.4
Q ss_pred eEEEEE---cCCCCEEEEEeC-------------CCeEEEEEcc----CceEEEecC-----C---------CcEEEEEE
Q 004298 24 IKIAEW---NPEKDLLAMATE-------------DSKILLHRFN----WQRLWTISP-----G---------KSVTSLCW 69 (763)
Q Consensus 24 V~~l~~---sP~~~lLA~~s~-------------Dg~V~v~~l~----~~~v~~~~~-----~---------~~V~~l~w 69 (763)
+..+.| .|++.++++... +..|..|+++ ++.+|.+.- + .....++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 578999 789888876442 6779999988 888887751 1 24789999
Q ss_pred ccCCCEEEEEEcC-CcEEEEEccCCeEEEEec------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 70 RPDGKAIAVGLED-GTITLHDVENGKLLRSLK------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 70 spDG~~Lasg~~D-g~V~lwdve~g~~~~~l~------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.++|+.-++++.. +.|...+.. |+.+..+. ......+.|.++|++..++... ..+.+.-+|+..
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~------~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG------GPRALTAFDVSK 215 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES------SSSSEEEEECSS
T ss_pred CCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc------CCCeEEEEcCCC
Confidence 9999988888877 887777754 44333221 1122467999999998777664 366677777663
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=85.54 E-value=3.4 Score=46.94 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=65.7
Q ss_pred CCCC---EEEEEeCCCeEEEEEc-cCceEEEecCCC--------------cE----------------------------
Q 004298 31 PEKD---LLAMATEDSKILLHRF-NWQRLWTISPGK--------------SV---------------------------- 64 (763)
Q Consensus 31 P~~~---lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~--------------~V---------------------------- 64 (763)
.+|+ .++.++.+|.+++++. +|+.+|....+. .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4663 7778899999999998 899999875321 00
Q ss_pred ----EEEEEccCCCEEEEEE---------------------------------cCCcEEEEEccCCeEEEEecccCCcee
Q 004298 65 ----TSLCWRPDGKAIAVGL---------------------------------EDGTITLHDVENGKLLRSLKSHTVAVV 107 (763)
Q Consensus 65 ----~~l~wspDG~~Lasg~---------------------------------~Dg~V~lwdve~g~~~~~l~~h~~~V~ 107 (763)
..++++|+...+.+.. .+|.|.-||..+|+.+.+..... ++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence 1346677655555433 25789999999999887765432 221
Q ss_pred EEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 108 CLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 108 ~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.-.....+..+..++ .|+.++.||..+
T Consensus 490 ~g~~~tagglvf~g~------~dg~l~A~D~~t 516 (582)
T 1flg_A 490 AGVLATAGNLVFTGT------GDGYFKAFDAKS 516 (582)
T ss_dssp SCCEEETTTEEEEEC------TTSEEEEEETTT
T ss_pred ccceEeCCCEEEEEC------CCCcEEEEECCC
Confidence 111112234444455 688888888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=85.04 E-value=3.7 Score=47.34 Aligned_cols=117 Identities=8% Similarity=-0.000 Sum_probs=71.5
Q ss_pred eEEEEEcC-CCCEEEEEeCCC-----------eEEEEEcc---CceEEEec--CCCcEEEEEEccCCCEEEEEE-cCCcE
Q 004298 24 IKIAEWNP-EKDLLAMATEDS-----------KILLHRFN---WQRLWTIS--PGKSVTSLCWRPDGKAIAVGL-EDGTI 85 (763)
Q Consensus 24 V~~l~~sP-~~~lLA~~s~Dg-----------~V~v~~l~---~~~v~~~~--~~~~V~~l~wspDG~~Lasg~-~Dg~V 85 (763)
-...++.| ++++++.|+.+. .+.+|+.. |..+-... +.....+.++.++|+++++|+ .++.+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 34667788 888888887543 57788873 33443332 223344678889999999998 55689
Q ss_pred EEEEccCCeEEEEecccCCc-eeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 86 TLHDVENGKLLRSLKSHTVA-VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~~~-V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+||..+++....-..+... -.++...++++.++.|+..........+.+||...
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 99999887654432222222 13445556888877776211111224566777654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.49 E-value=30 Score=40.40 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
..|.++...+++.+.+ |+.++-|..++...+++..+. +...|.++...++|++.+ |.. +-+..+|..+++..+
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe
Confidence 4588888888887655 676667888887555555543 346799999998887544 455 568889988776543
Q ss_pred Eeccc-----CCceeEEEeecCCCceecc
Q 004298 98 SLKSH-----TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 98 ~l~~h-----~~~V~~l~ws~~~~~l~s~ 121 (763)
..... ...|.++...++|...+..
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred cccCcccccccceeEEEEEcCCCCEEEEE
Confidence 32222 3578999888888765544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=84.08 E-value=21 Score=36.12 Aligned_cols=189 Identities=13% Similarity=0.010 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC--eEEEEEc-cCce--EEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDS--KILLHRF-NWQR--LWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL- 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg--~V~v~~l-~~~~--v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~- 95 (763)
..+..++++|+++++++....+ .|..++. +++. +...........++..+++..+++-..+|.|..+|..+++.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4578899999999776654332 3555554 3432 22222333445666666665555555689999999776532
Q ss_pred EEEec---------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 96 LRSLK---------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 96 ~~~l~---------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
+.... ..-.....| ++++..+..+. ...+.+..++.... ..+. ....+... .....+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d-----~~~~~I~~~~~~~~-g~~~----~~~~~~~~--~~P~gi 217 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN-----TEKMLLLRIPVDST-DKPG----EPEIFVEQ--TNIDDF 217 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE-----TTTTEEEEEEBCTT-SCBC----CCEEEEES--CCCSSE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEe-----CCCCEEEEEEeCCC-CCCC----ccEEEecc--CCCCCe
Confidence 21111 011233445 77776443332 14567777776531 1100 00000000 001111
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEec---CCCCEEEEEeec
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVALS---KDLFHLTVLCSG 242 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S---pDg~~Llv~~~d 242 (763)
+.+++++++++....+.|..++.+ |+.. +...... -....+++|. ||++.|+++...
T Consensus 218 --~vd~dG~l~va~~~~~~V~~~~~~----G~~~~~~~~~~~-------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 218 --AFDVEGNLYGATHIYNSVVRIAPD----RSTTIIAQAEQG-------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --EEBTTCCEEEECBTTCCEEEECTT----CCEEEEECGGGT-------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --EECCCCCEEEEeCCCCeEEEECCC----CCEEEEeecccc-------------cCCceEEEEecccCCCCEEEEECCC
Confidence 233456666666666777776532 2211 0000000 0135678998 899999998875
Q ss_pred C
Q 004298 243 Q 243 (763)
Q Consensus 243 ~ 243 (763)
+
T Consensus 279 ~ 279 (306)
T 2p4o_A 279 G 279 (306)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=84.01 E-value=25 Score=37.52 Aligned_cols=112 Identities=6% Similarity=-0.162 Sum_probs=70.5
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEE-c-CCcEEEEEccCCeEEE
Q 004298 23 QIKIAEWNPE-KDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGL-E-DGTITLHDVENGKLLR 97 (763)
Q Consensus 23 ~V~~l~~sP~-~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~-~-Dg~V~lwdve~g~~~~ 97 (763)
....+++.+. +++..+-...+.|.+.+++|.....+. ......+|++.|.+..|.... . .+.|...++. |....
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccE
Confidence 3567888874 455555566788988888776443332 335688999999666665554 3 4788888876 43333
Q ss_pred Ee-cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 98 SL-KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 98 ~l-~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+ ...-.....|++++++..+..+. ...+.|..++...
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD-----~~~~~I~~~d~dG 277 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVD-----SKLHSISSIDVNG 277 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEE-----TTTTEEEEEETTS
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEE-----CCCCEEEEEeCCC
Confidence 33 22235678999998766544332 1355666666543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=83.90 E-value=21 Score=37.24 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=60.9
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEEccCceEEEe-cC-CCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCeEEEE
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDSKILLHRFNWQRLWTI-SP-GKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l~~~~v~~~-~~-~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~~~~~ 98 (763)
.+..++|+|....|..+ ...+.|..+++++.....+ .. .....++++.+.+..| .+-...+.|.+.+.........
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 36788999866555444 4567888888866543333 22 2356789999855555 4445678899999764332222
Q ss_pred ecccCCceeEEEeecCCCcee
Q 004298 99 LKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~ 119 (763)
+...-.....+++.|.+..+.
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEE
T ss_pred EeCCCCCcceEEEecCcCeEE
Confidence 333335678899998655443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=83.83 E-value=28 Score=35.75 Aligned_cols=101 Identities=14% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc----cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF----NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK 94 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l----~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~ 94 (763)
+.+..+..++++|++.+++.+. +|.+..-.- +|+++ .......+..+.+.|+|+.++ ++.+|.+++.+...|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence 3345688999999988887654 555433221 23333 222445788999999997665 4567887766433354
Q ss_pred EEEEecc----cCCceeEEEeecCCCceeccC
Q 004298 95 LLRSLKS----HTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 95 ~~~~l~~----h~~~V~~l~ws~~~~~l~s~s 122 (763)
.-..+.. +...+.++.+.+++..++.+.
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 4433321 223588899988877777664
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.13 E-value=12 Score=39.15 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCce--EEEec----CCCcEEEEEEccC---CCEEEEEEc-C-----CcEEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQR--LWTIS----PGKSVTSLCWRPD---GKAIAVGLE-D-----GTITLH 88 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~--v~~~~----~~~~V~~l~wspD---G~~Lasg~~-D-----g~V~lw 88 (763)
...++|.|+|+++++ ..+|.|.+++ +++. +..+. .......|+|+|| +..|.++.. + +.|..+
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 578999999996654 5569998888 5542 22222 1346889999998 555555543 2 667778
Q ss_pred EccCCe------EEEEecc---cCCceeEEEeecCCCceecc
Q 004298 89 DVENGK------LLRSLKS---HTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 89 dve~g~------~~~~l~~---h~~~V~~l~ws~~~~~l~s~ 121 (763)
+...++ .+..+.. .......+.|.|+|.+.++.
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 876442 1222331 11234689999999766654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=82.83 E-value=11 Score=41.75 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=66.7
Q ss_pred eEEEEEcCC-C-CEEEEEeCCCeEEEEEccCceEEEecCC-----CcEEEEEE-------ccCCCEEEEEEcCC-c----
Q 004298 24 IKIAEWNPE-K-DLLAMATEDSKILLHRFNWQRLWTISPG-----KSVTSLCW-------RPDGKAIAVGLEDG-T---- 84 (763)
Q Consensus 24 V~~l~~sP~-~-~lLA~~s~Dg~V~v~~l~~~~v~~~~~~-----~~V~~l~w-------spDG~~Lasg~~Dg-~---- 84 (763)
...|+|+|. . +++++....+.|++.++..+.+..+... .....|+| +++|+.|.++...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 568999994 4 5555555456788888877777776533 25899999 99999776666543 2
Q ss_pred --EEEEEccC-CeEE-----EEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCC
Q 004298 85 --ITLHDVEN-GKLL-----RSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 85 --V~lwdve~-g~~~-----~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
|.+++... |... ..+... .....++.+|++.. .++.. ..+.+..+|..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~------~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSY------EKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEET------TTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEEC------CCCEEEEEecc
Confidence 66665333 2221 122211 23456677885544 44433 56677777765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=82.69 E-value=51 Score=34.58 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCC----C---EEEEEe-C--CCeEEEEEcc--CceEEEec-------CC-CcEEEEEE--ccC-CC-EEE
Q 004298 22 SQIKIAEWNPEK----D---LLAMAT-E--DSKILLHRFN--WQRLWTIS-------PG-KSVTSLCW--RPD-GK-AIA 77 (763)
Q Consensus 22 ~~V~~l~~sP~~----~---lLA~~s-~--Dg~V~v~~l~--~~~v~~~~-------~~-~~V~~l~w--spD-G~-~La 77 (763)
+++..+..-|.- . ++++.. . +++|.+|+++ ...+..+. .+ ..+..+|. +|+ |+ +++
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yaf 147 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAM 147 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEE
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEE
Confidence 346666665532 1 333333 3 5789999883 33454542 22 56777888 774 55 678
Q ss_pred EEEcCCcEEEEEcc-------CCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCccc
Q 004298 78 VGLEDGTITLHDVE-------NGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVS 150 (763)
Q Consensus 78 sg~~Dg~V~lwdve-------~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s 150 (763)
+...+|.+..|++. +++.++++.. .+.+..|...+....+..+- ++..|..++..+..........
T Consensus 148 V~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~e------Ed~GIw~~da~p~~~~~~~~v~ 220 (355)
T 3amr_A 148 VTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAE------EDEAIWKFSAEPDGGSNGTVID 220 (355)
T ss_dssp EECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEE------TTTEEEEEECSTTSCSCCEEEE
T ss_pred EECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEec------ccceEEEEeCCcCCCCCceEEE
Confidence 88889999999883 3356777765 46788888888766666664 5544444454442211100000
Q ss_pred --CCcccccCCcccccceec--ccCCCeeEEEEEcCCCcEEEEEcC-c-eeeeeeeeccc
Q 004298 151 --GDTGFTDDSEDSFRELAN--SSHQRFSILCSGDKDGSICFNIFG-I-FPIGKINIHKF 204 (763)
Q Consensus 151 --~~~~~~~~~~~~~~~~~~--~~~~~~~~L~sgs~DG~I~lw~~~-~-~~ig~~~i~~~ 204 (763)
+...+. ....-+.. ....++-+++++-.+++..+|+.. . ..++++.+...
T Consensus 221 ~~~~g~l~----aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~ 276 (355)
T 3amr_A 221 RADGRHLT----RDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITDG 276 (355)
T ss_dssp EBSSSSBC----SCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECCC
T ss_pred EecCCccc----cCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecCC
Confidence 000111 11111222 222233355555477899999874 2 35677766553
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=81.89 E-value=1.9 Score=42.31 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-c-CceEEEecCCCcE--------EEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-N-WQRLWTISPGKSV--------TSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~-~~~v~~~~~~~~V--------~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
.++.++|+|++.+.|+ .+|.++-.+. + ....|--. ...| .++.|.|+|.+-++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 3779999999999888 5675433222 1 11122111 1223 78999999998888 669887777532
Q ss_pred CeE-------EEEecccCCceeEEEeecCCCceecc
Q 004298 93 GKL-------LRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 93 g~~-------~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
... ...-..--..+.++.+.|+|.+.+..
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 111 11111112578999999999876554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=80.95 E-value=39 Score=35.95 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=59.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEEccCce----EEE-ec-CCCcEEEEEEccCCCEE-EEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMA-TEDSKILLHRFNWQR----LWT-IS-PGKSVTSLCWRPDGKAI-AVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l~~~~----v~~-~~-~~~~V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~ 94 (763)
.+..++|++....|..+ ...+.|..+++++.. ... +. .......+++.+.+..| .+-...+.|.+.+.+...
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~ 192 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 192 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc
Confidence 47889999866555544 456788888886521 222 22 23467889999854444 444567889999987544
Q ss_pred EEEEecccCCceeEEEeecCCCce
Q 004298 95 LLRSLKSHTVAVVCLNWEEDAQPS 118 (763)
Q Consensus 95 ~~~~l~~h~~~V~~l~ws~~~~~l 118 (763)
....+...-.....|+..|.+..+
T Consensus 193 ~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 193 RKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp EEEEEECSSCCEEEEEEETTTTEE
T ss_pred eEEEEeCCCCCcceEEEecccCeE
Confidence 333333333557889999865444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.34 E-value=58 Score=33.74 Aligned_cols=108 Identities=7% Similarity=-0.066 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEe-cCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTI-SPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~-~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.++.+..|+.. |.. +..+.|+..++++.....+ .....+.+++|++.+..|... ...+.|..++...+.....+..
T Consensus 36 ~~C~~~~~~~~-ll~-~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEPV-LLF-ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCCE-EEE-ECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCce-eEe-ecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 44555555333 332 3345577777766544433 334568899999866655555 4678899999876554333333
Q ss_pred cCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCC
Q 004298 102 HTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
.......+++.+.+.. ..+.. ..+.|...+..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~------~~~~I~~~~~d 146 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDS------GTSRIEVANLD 146 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred CCCCccEEEEecCCCeEEEEcC------CCCeEEEEcCC
Confidence 2345677888765443 33332 34566666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 763 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.7 bits (161), Expect = 2e-12
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSKILL----HRFNWQRLWTISPGKSVTSLCWRPDGKAIA 77
S I + P + A ++D+ L + +TS+ + G+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 78 VGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
G +D + D L H V CL +D
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.0 bits (110), Expect = 5e-06
Identities = 7/85 (8%), Positives = 24/85 (28%)
Query: 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122
+ ++ W D + + +DG + + D + ++ + V+ +
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 123 GNIPTYEDRTSRFFPPAPRIPQMPG 147
+ ++ G
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAG 141
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSKI-LLHRFNWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
I ++ LL +D + R ++ V+ L DG A+A G
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 80 LEDGTITLHD 89
D + + +
Sbjct: 331 SWDSFLKIWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 14/134 (10%)
Query: 1 METDEAMRVLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF---------- 50
ET + L + + + + + + + D + L
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 51 ----NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV 106
+ I V S+ + + I G +D + D ++G L L+ H +V
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
Query: 107 VCLNWEEDAQPSKN 120
+ + +
Sbjct: 354 ISVAVANGSSLGPE 367
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.001
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 63 SVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111
V + + DG+ +A G + T ++ V +G L+ L + A
Sbjct: 64 VVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPEN 111
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 49 RFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV 107
R + QR+ S K V C + D + I GL D TI + D + R L HT +V+
Sbjct: 2 RHSLQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59
Query: 108 CLNW 111
CL +
Sbjct: 60 CLQY 63
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.1 bits (131), Expect = 1e-08
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQRLWTISPGKS-VTSLCWRPDGKAIAVG 79
+ + + L + D I + + L T+ + V + + GK I
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265
Query: 80 LEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ 116
+D T+ + D +N + +++L +H V L++ + A
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.1 bits (131), Expect = 1e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111
VT + + P + ED TI + D E G R+LK HT +V +++
Sbjct: 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISP-GKSVTSLCWRPDGKAIAVG 79
+ ++ ++ + +D + + + N + + T++ VTSL + + G
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307
Query: 80 LEDGTITLHD 89
D T+ + +
Sbjct: 308 SVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 7e-05
Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 10/186 (5%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWR--PDGKAIAVGLEDGTIT 86
P D + A+ D I + G R DG IA D T+
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168
Query: 87 LHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQM 145
+ V + L+ H V C++W ++ S ++ T + F + +
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228
Query: 146 PGLVSGDTGFT----DDSEDSFRELANSSHQRFSILCSGDKDGSIC-FNIFGIFPIGKIN 200
+ TG ++ R + S +F + S D ++ ++ + +N
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF--ILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 201 IHKFHV 206
H+ V
Sbjct: 287 AHEHFV 292
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK--LLRSLKSHTVAVVCLNWEEDAQ 116
+ ++ W D IA+ + + +++ K + LK H V ++W D+
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.4 bits (108), Expect = 8e-06
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 29 WNPEKDLLAMATEDSKILLHRFN---WQRLWTISP-GKSVTSLCWRPDGKAIAVGLEDGT 84
WN ++ +A+ + ++ ++ + W ++ + VT + W PD I D
Sbjct: 15 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74
Query: 85 ITLHD 89
+
Sbjct: 75 AYVWT 79
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 6e-08
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 56 WTISPGKSVTSL---------CWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV 106
W KS L C + G I G +D T+ + GK LR+L HT V
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 107 VCLNWEED 114
++
Sbjct: 61 WSSQMRDN 68
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 29 WNPEKDLLAMATEDSKILL---HRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTI 85
+ ++L DS + + + C + + + +DGT+
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 86 TLHDVENGKLLRSLKS-----HTVAVVCLNWEED 114
L D++ G+ +R+L + V +
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 7e-08
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLN 110
+ + S S+ DG + +G G + +D E + + A + L
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
Query: 111 W 111
Sbjct: 329 S 329
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLH 88
A E +L + +++ + ++T L D K + V +DG I
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--NNLTDLRLSADRKTVMVRKDDGKIYTF 341
Query: 89 DVENGKLLRSL 99
+E + R++
Sbjct: 342 PLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.3 bits (87), Expect = 0.002
Identities = 8/90 (8%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 27 AEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG--T 84
+++P L + + + + + + + D K +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 67
Query: 85 ITLHDVENGKLLRSLKSHTVAVVCLNWEED 114
+ ++D GK + + V + + +
Sbjct: 68 LGIYDYRTGK-AEKFEENLGNVFAMGVDRN 96
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 4/72 (5%), Positives = 24/72 (33%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLH 88
+P+ + + + + + + + G + +G + +
Sbjct: 259 RSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
Query: 89 DVENGKLLRSLK 100
+ + + ++++K
Sbjct: 319 NPDTLEKVKNIK 330
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 29 WNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87
+ +D+ + R ++ SV S D K I G D T+
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
Query: 88 HDV 90
++V
Sbjct: 333 YEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 48 HRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVV 107
H + V SL + GK +D + G + K + +V+
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVL 310
Query: 108 CLNWEEDAQ 116
+ D +
Sbjct: 311 SCDISVDDK 319
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 6e-05
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK-----LLRSLKSHTVA 105
+ +++ T++ G+ V ++ + + G G + + D+ + +
Sbjct: 41 HARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 106 VVCLNWEEDAQ 116
+ D
Sbjct: 100 IRSCKLLPDGC 110
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL---LRSLKSHTVAVVCLNWEED 114
P ++ + P + + DG++T++ + L + ++C N+ ++
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 7/83 (8%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 29 WNPEKDLLAMATEDSKILL-HRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87
++P L A D I + +++ + + + + + D T
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT 318
Query: 88 HDVENGKLLRSLKSHTVAVVCLN 110
+ + ++++ + ++ +
Sbjct: 319 N----AAIDQTIELNASSIYIIF 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 47 LHRFNWQRLWTISPGKS--VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL-KSHT 103
F RL + V S+ + P K + DG I+ +++ K +++ K +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Query: 104 VAVVCLNWEED 114
+VV + ++
Sbjct: 295 DSVVKIACSDN 305
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.5 bits (121), Expect = 1e-07
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL-KSHTVAVVCLNW 111
K++T+L DGK + +G I D+ G R H + +
Sbjct: 13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGKLLRSLKSH 102
+RL G + S+ D K A+ D T+ +HD E+G+ LRS+
Sbjct: 289 TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEED 114
SV + C + + + G +D I ++D N K L L H V L +
Sbjct: 13 TSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 6e-05
Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLH 88
L A D I N +++++ I V + ++
Sbjct: 249 LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308
Query: 89 DVENGKLLRS-LKSHTVAVVCLNWEED 114
++ +GKL+ + + + +N++
Sbjct: 309 NLRSGKLVHANILKDADQIWSVNFKGK 335
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.1 bits (113), Expect = 2e-06
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 51 NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHDVENGKLLRSLKS----HTV 104
Q IS G ++ DG A + ++D + + S++ ++
Sbjct: 303 VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESL 362
Query: 105 AVV 107
+V
Sbjct: 363 SVQ 365
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.8 bits (109), Expect = 6e-06
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 48 HRFNWQRLWTISPGKSVTSLCWRPDGKAIAV-GLEDGTITLHDVENGKLLRSLK 100
+ I G + PDGK + V T+++ D + ++
Sbjct: 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 48 HRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT---V 104
F L ++ SV L W PDG IA D TI + +V K+ +++ T
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284
Query: 105 AVVCLNWEED 114
+ + W +
Sbjct: 285 QQLGIIWTKQ 294
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 6/51 (11%), Positives = 10/51 (19%), Gaps = 1/51 (1%)
Query: 64 VTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEED 114
L P G I ++ V + H+
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 62 KSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNW 111
V SL + G+ + DG + DV+ + + +L H +
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 29 WNPEKDLLAMATEDSKILLHRFN-WQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITL 87
+ + +I L + + + I G +V G+ + V D I +
Sbjct: 28 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM 87
Query: 88 HDVENGKL-----LRSLKSHTVAVVCLNWEED 114
D+ + ++ +
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYE 119
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.002
Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 29 WNPEKDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRP--DGKAIAVGL 80
++P + +A S + + VT++ + P + + G
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 81 EDGTITLHDVENGKLLRSL--------KSHTVAVVCLNWEED 114
E G + + K S+ + + ++W+ +
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.003
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 4/73 (5%)
Query: 48 HRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHT---- 103
F P + D + A D TI + DV K ++
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297
Query: 104 VAVVCLNWEEDAQ 116
V + + +
Sbjct: 298 NQQVGVVATGNGR 310
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 763 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.85 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.84 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.83 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.83 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.82 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.81 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.76 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.73 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.72 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.72 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.71 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.69 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.69 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.68 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.67 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.65 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.64 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.62 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.58 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.58 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.57 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.57 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.57 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.51 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.49 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.42 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.34 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.3 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.29 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.27 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.24 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.19 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.19 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.11 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.11 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.09 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.99 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.68 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.45 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.27 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.14 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.14 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.11 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.08 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.08 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.53 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.45 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.23 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.22 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.22 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.2 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.05 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.03 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.61 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.38 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.26 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.12 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 95.74 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.33 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.78 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 90.89 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 87.82 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 82.32 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.84 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 81.09 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=4.1e-20 Score=193.41 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=138.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcC-----------------
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLED----------------- 82 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~D----------------- 82 (763)
+.|++++|+|++++||+|+.||+|+||++ +++.+..+. |...|.+++|+|+|+++++|+.|
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 135 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV 135 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCE
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccccc
Confidence 34999999999999999999999999999 666666654 55667777777776666665544
Q ss_pred ----------------------------------------------------------------------CcEEEEEccC
Q 004298 83 ----------------------------------------------------------------------GTITLHDVEN 92 (763)
Q Consensus 83 ----------------------------------------------------------------------g~V~lwdve~ 92 (763)
+.|++||+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~ 215 (340)
T d1tbga_ 136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215 (340)
T ss_dssp EEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC
Confidence 4566677777
Q ss_pred CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQ 172 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~ 172 (763)
++.+.++.+|...|++++|+|++.++++++ .|+.+++|+..............+ ...+. ...+++
T Consensus 216 ~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s------~d~~i~~~~~~~~~~~~~~~~~~~-------~~~i~--~~~~s~ 280 (340)
T d1tbga_ 216 GMCRQTFTGHESDINAICFFPNGNAFATGS------DDATCRLFDLRADQELMTYSHDNI-------ICGIT--SVSFSK 280 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEEEECCTTC-------CSCEE--EEEECS
T ss_pred CcEEEEEeCCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeecccccccccccccc-------cCceE--EEEECC
Confidence 777777778999999999999999999998 899999999875311100000000 11122 234567
Q ss_pred CeeEEEEEcCCCcEEEEEcCcee-eeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 173 RFSILCSGDKDGSICFNIFGIFP-IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 173 ~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++++|++|+.||.|++|+..... +..+. .+.++|.+++|+|||++|++++.|+
T Consensus 281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------------~H~~~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 281 SGRLLLAGYDDFNCNVWDALKADRAGVLA------------------GHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEEC------------------CCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEECCCEEEEEECCCCcEEEEEc------------------CCCCCEEEEEEeCCCCEEEEEccCC
Confidence 78899999999999999866432 22221 1235689999999999999887765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.84 E-value=3e-20 Score=200.18 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=121.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEE-
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLL- 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~- 96 (763)
.+|++++|||++++||+|+.||.|+||+..+. .+..+. |...|++++|+|+|++|++|+.|++|+|||+.++...
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence 44999999999999999999999999999544 344443 7889999999999999999999999999999877654
Q ss_pred -EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCC--CCCcccCCcccccCCcccccceecccCCC
Q 004298 97 -RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQ--MPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 97 -~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~--l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
..+..|...|+++.|+|+++.+++++ .|+++++|+....... ......++.. .+ ....++++
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s------~d~~i~i~~~~~~~~~~~~~~~~~~~~~-------~v--~~v~~~p~ 152 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNEKKFAVGS------GSRVISICYFEQENDWWVCKHIKKPIRS-------TV--LSLDWHPN 152 (371)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEE------TTSSEEEEEEETTTTEEEEEEECTTCCS-------CE--EEEEECTT
T ss_pred ccccccccccccccccccccccceeec------ccCcceeeeeeccccccccccccccccc-------cc--cccccccc
Confidence 44567889999999999999999998 8999999976542110 0000111111 12 22345678
Q ss_pred eeEEEEEcCCCcEEEEEcC
Q 004298 174 FSILCSGDKDGSICFNIFG 192 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~ 192 (763)
+.+|++|+.||+|++|+..
T Consensus 153 ~~~l~s~s~D~~v~v~~~~ 171 (371)
T d1k8kc_ 153 SVLLAAGSCDFKCRIFSAY 171 (371)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred ccceeccccCcEEEEEeec
Confidence 8899999999999999753
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.83 E-value=1.2e-19 Score=191.04 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=145.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEE--Eec-CCCcEEEEEEccCCCEEEEEEc--CCcEEEEEccCCeE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLW--TIS-PGKSVTSLCWRPDGKAIAVGLE--DGTITLHDVENGKL 95 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~--~~~-~~~~V~~l~wspDG~~Lasg~~--Dg~V~lwdve~g~~ 95 (763)
+.|++++|+|++++||+|+.||+|+||++ +++.+. .+. |...|.+++|+|||++|++++. ++.+++|++++++.
T Consensus 59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~ 138 (311)
T d1nr0a1 59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence 34999999999999999999999999999 333332 233 6789999999999999999986 45699999999999
Q ss_pred EEEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCe
Q 004298 96 LRSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 96 ~~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
...+.+|...|++++|+|++.+ +++|+ .|+.+++||..... ......++.. .+..+ .+++++
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs------~d~~i~i~d~~~~~--~~~~~~~~~~-------~i~~v--~~~p~~ 201 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGS------DDNTVAIFEGPPFK--FKSTFGEHTK-------FVHSV--RYNPDG 201 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEE------TTSCEEEEETTTBE--EEEEECCCSS-------CEEEE--EECTTS
T ss_pred cccccccccccccccccccceeeecccc------cccccccccccccc--cccccccccc-------ccccc--ccCccc
Confidence 9999999999999999999985 77787 79999999987521 1111112222 22223 345778
Q ss_pred eEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 175 SILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
+++++|+.||.|++|+.... ....+.... .....+.+.|.+++|||||++|++++.|+
T Consensus 202 ~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~-----------~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg 260 (311)
T d1nr0a1 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDS-----------LKNVAHSGSVFGLTWSPDGTKIASASADK 260 (311)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTT-----------SSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccc-----------cccccccccccccccCCCCCEEEEEeCCC
Confidence 89999999999999986543 222222111 00111235689999999999999888766
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.9e-19 Score=193.18 Aligned_cols=203 Identities=18% Similarity=0.223 Sum_probs=147.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-------------------CCCcEEEEEEccCCCEEEEEEcC
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-------------------PGKSVTSLCWRPDGKAIAVGLED 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-------------------~~~~V~~l~wspDG~~Lasg~~D 82 (763)
.|++++|+|+|++||+|+ |+.|+||++ +++.+..+. +...|++++|+|||++|++|+.|
T Consensus 64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d 142 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142 (388)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence 399999999999999987 899999999 666655542 34569999999999999999999
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCccc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDS 162 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~ 162 (763)
|.|++||..+++.+..+.+|...|.++.|++++..+++++ .++.+++||......... ......
T Consensus 143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~------~~~~i~~~d~~~~~~~~~--~~~~~~-------- 206 (388)
T d1erja_ 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS------GDRTVRIWDLRTGQCSLT--LSIEDG-------- 206 (388)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEEEEE--EECSSC--------
T ss_pred cccccccccccccccccccccccccccccccccccccccc------cceeeeeeeccccccccc--cccccc--------
Confidence 9999999999999999999999999999999999988887 899999999875311100 000000
Q ss_pred ccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eee-----------------eeecccccccccCCCCCceeeec---
Q 004298 163 FRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGK-----------------INIHKFHVAIPNADEQGTCRLLN--- 221 (763)
Q Consensus 163 ~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~-----------------~~i~~~~~~~~s~~~~~~~~l~~--- 221 (763)
..... ....++++|++|+.||.|++|+..... ... +........+.+++.++.+++|+
T Consensus 207 ~~~~~-~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 285 (388)
T d1erja_ 207 VTTVA-VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285 (388)
T ss_dssp EEEEE-ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccccc-ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence 00011 123455678888888888888654321 111 11111111223455667777775
Q ss_pred -----------------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 -----------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -----------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|+|++|++++.|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 330 (388)
T d1erja_ 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330 (388)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence 3578899999999999888776
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.8e-19 Score=189.55 Aligned_cols=213 Identities=11% Similarity=0.050 Sum_probs=155.7
Q ss_pred cceeEeecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccC-c---eEEE---ecCCCcEEEEEEccCCCEEEEEEc
Q 004298 9 VLPFQLQFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFNW-Q---RLWT---ISPGKSVTSLCWRPDGKAIAVGLE 81 (763)
Q Consensus 9 ~~~~~~~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~-~---~v~~---~~~~~~V~~l~wspDG~~Lasg~~ 81 (763)
.+++++.|..+ |.+++|+|++++||+|+ ||.|+||++.. + .+.. ..|...|.+++|+|||++|++|+.
T Consensus 43 ~~~~~~~H~~~----V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTLNHGEV----VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp EEEEEECCSSC----CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred eEEEECCCCCc----EEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence 34555656555 99999999999999987 89999999832 1 2222 236788999999999999999999
Q ss_pred CCcEEEEEccC--CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCC
Q 004298 82 DGTITLHDVEN--GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDS 159 (763)
Q Consensus 82 Dg~V~lwdve~--g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~ 159 (763)
||.|++||+.. ++....+..|...|.++.|+|++..+++++ .++.+++|+..... ......++..
T Consensus 118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~d~~i~~~~~~~~~--~~~~~~~~~~----- 184 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC------SDGNIAVWDLHNQT--LVRQFQGHTD----- 184 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTE--EEEEECCCSS-----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccc--cccccccccc-----
Confidence 99999999874 566777888999999999999999999987 89999999987531 1111111211
Q ss_pred cccccceecccCCCeeEEEEEcCCCcEEEEEcCcee-eeeeeecc---------cccccccCCCCCceeeec--------
Q 004298 160 EDSFRELANSSHQRFSILCSGDKDGSICFNIFGIFP-IGKINIHK---------FHVAIPNADEQGTCRLLN-------- 221 (763)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~-ig~~~i~~---------~~~~~~s~~~~~~~~l~~-------- 221 (763)
.+.. ..++++++.+++|+.||.|++|+..... +..+.... ......+++.++.+++|+
T Consensus 185 --~v~~--l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 260 (337)
T d1gxra_ 185 --GASC--IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp --CEEE--EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred --cccc--ccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc
Confidence 1222 2345677889999999999999875432 22221111 111123556778888876
Q ss_pred -----cceeeEEecCCCCEEEEEeecC
Q 004298 222 -----ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 -----~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..|.+++|+|||+++++++.|+
T Consensus 261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg 287 (337)
T d1gxra_ 261 LHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccceEEECCCCCEEEEEeCCC
Confidence 5789999999999999887766
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1e-18 Score=185.13 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=157.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+.|.+++|+|++++||+++.||.|++|++... ....+. |...|.+++|+|++.++++++.|+.|++|++++++...
T Consensus 98 ~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45999999999999999999999999998432 233333 67789999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
....|...|.+++|++++..+++++ .|+.+++||...... +.. ..+ ...+. ...++++++.|
T Consensus 178 ~~~~~~~~v~~l~~s~~~~~~~~~~------~d~~v~i~d~~~~~~-~~~--~~~-------~~~i~--~l~~~~~~~~l 239 (337)
T d1gxra_ 178 QFQGHTDGASCIDISNDGTKLWTGG------LDNTVRSWDLREGRQ-LQQ--HDF-------TSQIF--SLGYCPTGEWL 239 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEE-EEE--EEC-------SSCEE--EEEECTTSSEE
T ss_pred ccccccccccccccccccccccccc------cccccccccccccee-ecc--ccc-------ccceE--EEEEccccccc
Confidence 9999999999999999999999887 899999999875311 000 011 11122 23345777899
Q ss_pred EEEcCCCcEEEEEcCceeeeeeeeccc----------ccccccCCCCCceeeec-------------cceeeEEecCCCC
Q 004298 178 CSGDKDGSICFNIFGIFPIGKINIHKF----------HVAIPNADEQGTCRLLN-------------ASIYKVALSKDLF 234 (763)
Q Consensus 178 ~sgs~DG~I~lw~~~~~~ig~~~i~~~----------~~~~~s~~~~~~~~l~~-------------~~I~~v~~SpDg~ 234 (763)
++|+.||.|++|+...........+.. ...+.+++.++.+++|+ .+|.+++|||||+
T Consensus 240 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~ 319 (337)
T d1gxra_ 240 AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319 (337)
T ss_dssp EEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSC
T ss_pred ceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCC
Confidence 999999999999876543322222211 11234667889999997 4789999999999
Q ss_pred EEEEEeecC
Q 004298 235 HLTVLCSGQ 243 (763)
Q Consensus 235 ~Llv~~~d~ 243 (763)
+|++++.|+
T Consensus 320 ~l~t~s~D~ 328 (337)
T d1gxra_ 320 YIVTGSGDK 328 (337)
T ss_dssp EEEEEETTS
T ss_pred EEEEEeCCC
Confidence 998887665
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=8.1e-18 Score=172.68 Aligned_cols=211 Identities=14% Similarity=0.190 Sum_probs=161.1
Q ss_pred eEee-cCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEE
Q 004298 12 FQLQ-FDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLH 88 (763)
Q Consensus 12 ~~~~-~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lw 88 (763)
++++ |.++ |++++|+|++++||+|+.||+|+||++ +++.+..+. |...|.+++|+|++.++++++.++.+..|
T Consensus 11 ~~L~GH~~~----I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 11 YALSGHRSP----VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp CEEECCSSC----EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred EEEcCCCCC----eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence 3444 5555 999999999999999999999999999 677777776 78899999999999999999999999999
Q ss_pred EccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceec
Q 004298 89 DVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELAN 168 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~ 168 (763)
+....+....+..|...+.++.|++++..+++++ .|+.+++|+..... ......++.... ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~ 149 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS------RDKTIKMWEVQTGY--CVKTFTGHREWV---------RMV 149 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTTCC--EEEEEECCSSCE---------EEE
T ss_pred cccccccccccccccccceeeeccCCCceEEeec------cCcceeEeecccce--eeeEEccCCCcc---------eee
Confidence 9999999888999999999999999999999987 89999999987531 111111222111 223
Q ss_pred ccCCCeeEEEEEcCCCcEEEEEcCceee-eeeeecccc------------------------------cccccCCCCCce
Q 004298 169 SSHQRFSILCSGDKDGSICFNIFGIFPI-GKINIHKFH------------------------------VAIPNADEQGTC 217 (763)
Q Consensus 169 ~~~~~~~~L~sgs~DG~I~lw~~~~~~i-g~~~i~~~~------------------------------~~~~s~~~~~~~ 217 (763)
.++++++++++|+.||.|++|+...... ..+..+... ....+++.++.+
T Consensus 150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 229 (317)
T d1vyhc1 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229 (317)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE
Confidence 3557778999999999999998654321 111110000 001234466777
Q ss_pred eeec--------------cceeeEEecCCCCEEEEEeecC
Q 004298 218 RLLN--------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 218 ~l~~--------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
++|+ ..|.+++|+|+|++|++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 269 (317)
T d1vyhc1 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269 (317)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred EEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC
Confidence 7775 4688999999999999888776
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.76 E-value=2.2e-17 Score=173.38 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=126.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--CeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCE-EEEEEcCCcEEEEEccCCeEE
Q 004298 22 SQIKIAEWNPEKDLLAMATED--SKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKA-IAVGLEDGTITLHDVENGKLL 96 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D--g~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~-Lasg~~Dg~V~lwdve~g~~~ 96 (763)
+.|.+++|+|+++++++++.+ ..+.||++ .++.+..+. |...|++++|+|+|++ |++|+.||.|++||+++++..
T Consensus 103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~ 182 (311)
T d1nr0a1 103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 182 (311)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccc
Confidence 349999999999999998864 55899998 556666654 6778999999999985 888999999999999999999
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC--CCC---CcccCCcccccCCcccccceecccC
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMP---GLVSGDTGFTDDSEDSFRELANSSH 171 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~---~~~s~~~~~~~~~~~~~~~~~~~~~ 171 (763)
..+..|...|+++.|+|+++.+++++ .|+.+++|+...... .+. ....+|. ..+..+ .++
T Consensus 183 ~~~~~~~~~i~~v~~~p~~~~l~~~~------~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~-------~~V~~~--~~s 247 (311)
T d1nr0a1 183 STFGEHTKFVHSVRYNPDGSLFASTG------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHS-------GSVFGL--TWS 247 (311)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCEEEECBCTTSSSCSSS-------SCEEEE--EEC
T ss_pred cccccccccccccccCcccccccccc------cccccccccccccccccccccccccccccc-------cccccc--ccC
Confidence 99999999999999999999999988 899999999865311 010 0111222 222333 345
Q ss_pred CCeeEEEEEcCCCcEEEEEcCcee
Q 004298 172 QRFSILCSGDKDGSICFNIFGIFP 195 (763)
Q Consensus 172 ~~~~~L~sgs~DG~I~lw~~~~~~ 195 (763)
+++++|++|+.||+|++|++....
T Consensus 248 ~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 248 PDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc
Confidence 777899999999999999977554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.73 E-value=1.7e-16 Score=170.30 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=120.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCc---eEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE---
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQ---RLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL--- 95 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~---~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~--- 95 (763)
.|.+++|+|++++||+++.|++|+||++... +...+. +...|++++|+|+|+.|++|+.|++|++|+++....
T Consensus 53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~ 132 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132 (371)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc
Confidence 3999999999999999999999999999433 233333 667899999999999999999999999999876542
Q ss_pred -EEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC-Ccc--cCCccc----c--cCCcccccc
Q 004298 96 -LRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP-GLV--SGDTGF----T--DDSEDSFRE 165 (763)
Q Consensus 96 -~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~-~~~--s~~~~~----~--~~~~~~~~~ 165 (763)
......|...|.+++|+|+++++++++ .|+++++|+......... ... ...... . ......+.
T Consensus 133 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s------~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 205 (371)
T d1k8kc_ 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGS------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH- 205 (371)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEE------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE-
T ss_pred ccccccccccccccccccccccceeccc------cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEE-
Confidence 344567889999999999999999998 899999998765311100 000 000000 0 00111122
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
..+++++++.|++|+.||+|++|+...
T Consensus 206 -~~~~s~~g~~l~s~~~d~~i~iwd~~~ 232 (371)
T d1k8kc_ 206 -GVCFSANGSRVAWVSHDSTVCLADADK 232 (371)
T ss_dssp -EEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred -EEEeecccccccccccCCcceEEeeec
Confidence 234557788999999999999998654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.72 E-value=6e-17 Score=167.27 Aligned_cols=198 Identities=9% Similarity=0.018 Sum_probs=137.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE---E
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL---L 96 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~---~ 96 (763)
.|++++|+|++++||+|+.||+|++|++ +++.+..+. |...|++++|+|+|++ ++++.|+.+++|+...... .
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~ 92 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSK 92 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTS
T ss_pred CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccc
Confidence 3999999999999999999999999999 566666554 6678999999999975 4566799999999864322 1
Q ss_pred EEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.....+...+.++.|++++..+++++ ++.+++|+........ ..+ .. ....+++++++
T Consensus 93 ~~~~~~~~~~~~~~~s~~g~~~~~~~-------~~~i~~~~~~~~~~~~----~~~---------~~--~~~~~s~~~~~ 150 (299)
T d1nr0a2 93 AVANKLSSQPLGLAVSADGDIAVAAC-------YKHIAIYSHGKLTEVP----ISY---------NS--SCVALSNDKQF 150 (299)
T ss_dssp CCEEECSSCEEEEEECTTSSCEEEEE-------SSEEEEEETTEEEEEE----CSS---------CE--EEEEECTTSCE
T ss_pred cccccccccccccccccccccccccc-------cccccccccccccccc----ccc---------cc--ccccccccccc
Confidence 12234567889999999998887764 6788888754211000 000 01 11234567778
Q ss_pred EEEEcCCCcEEEEEcCceeeeeee--eccc-----c-----cccccCCCCCceeeec-----------------cceeeE
Q 004298 177 LCSGDKDGSICFNIFGIFPIGKIN--IHKF-----H-----VAIPNADEQGTCRLLN-----------------ASIYKV 227 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~~~ig~~~--i~~~-----~-----~~~~s~~~~~~~~l~~-----------------~~I~~v 227 (763)
+++|+.||.|++|+.......... .+.. . ....+++.++.+++|+ .+|.++
T Consensus 151 l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l 230 (299)
T d1nr0a2 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 230 (299)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 889999999999976433222111 1111 0 1123455667777775 368899
Q ss_pred EecCCCCEEEEEeecC
Q 004298 228 ALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 228 ~~SpDg~~Llv~~~d~ 243 (763)
+|+|+|+++++++.|+
T Consensus 231 ~~s~~~~~l~sgs~dg 246 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDN 246 (299)
T ss_dssp EECTTSSEEEEEETTS
T ss_pred cccccccceEEEcCCC
Confidence 9999999999888766
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=3.3e-16 Score=167.45 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=152.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..|.+++|+|++++|++|+.||.|++|+. .++.+.... |...|.+++|++++..+++|+.+|.|++||.++.......
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 201 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 201 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccc
Confidence 45999999999999999999999999999 555566555 7789999999999999999999999999999999888887
Q ss_pred cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCC--CCC---CcccCCcccccCCcccccceecccCCCe
Q 004298 100 KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIP--QMP---GLVSGDTGFTDDSEDSFRELANSSHQRF 174 (763)
Q Consensus 100 ~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~--~l~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (763)
..+...+....+.+++.++++++ .|+.+++|+...... .+. ....++. ..+..+ .+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l--~~s~~~ 266 (388)
T d1erja_ 202 SIEDGVTTVAVSPGDGKYIAAGS------LDRAVRVWDSETGFLVERLDSENESGTGHK-------DSVYSV--VFTRDG 266 (388)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEE------TTSCEEEEETTTCCEEEEEC------CCCS-------SCEEEE--EECTTS
T ss_pred ccccccccccccCCCCCeEEEEc------CCCeEEEeecccCccceeeccccccccCCC-------CCEEEE--EECCCC
Confidence 76655555555556788999887 899999999875311 000 0011111 122223 345677
Q ss_pred eEEEEEcCCCcEEEEEcCceee-----------------------eeeeecccccccccCCCCCceeeec----------
Q 004298 175 SILCSGDKDGSICFNIFGIFPI-----------------------GKINIHKFHVAIPNADEQGTCRLLN---------- 221 (763)
Q Consensus 175 ~~L~sgs~DG~I~lw~~~~~~i-----------------------g~~~i~~~~~~~~s~~~~~~~~l~~---------- 221 (763)
++|++|+.||.|++|++..... -.+........+.+++.++.+++|+
T Consensus 267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346 (388)
T ss_dssp SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 8999999999999997543210 0011111111234667888999987
Q ss_pred ----cceeeEE------ecCCCCEEEEEeecCccccccCCCCCCcEEEEEee
Q 004298 222 ----ASIYKVA------LSKDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLD 263 (763)
Q Consensus 222 ----~~I~~v~------~SpDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld 263 (763)
++|.+++ |+||++.|++++.|+ .|+++.+.
T Consensus 347 ~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg------------~I~iW~~~ 386 (388)
T d1erja_ 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDC------------KARIWKYK 386 (388)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTS------------EEEEEEEE
T ss_pred eCCCCCEEEEEEecCcccCCCCCEEEEEeCCC------------EEEEEeee
Confidence 3455554 678988888887665 77777653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=3.6e-16 Score=160.13 Aligned_cols=194 Identities=15% Similarity=0.146 Sum_probs=145.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
...+.++.|+|+++.+++++.|+.+.+|++ +++.+..+. |...+.+++|+|+|++|++|+.||.|++|+..+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 180 (317)
T d1vyhc1 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE
Confidence 345899999999999999999999999999 566666665 677899999999999999999999999999999999999
Q ss_pred ecccCCceeEEEeecCCCceeccCCC--------------CCcccCCceeecCCCCCCCCCCCcccCCcccccCCccccc
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGN--------------IPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFR 164 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~--------------~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~ 164 (763)
+..|...+.++.|+|++......... .....|+.+++|+..... ......++... +.
T Consensus 181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~-------v~ 251 (317)
T d1vyhc1 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNW-------VR 251 (317)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSC-------EE
T ss_pred EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc--EEEEEeCCCCC-------EE
Confidence 99999999999999876432211100 011268999999987531 11111222222 22
Q ss_pred ceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 165 ELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 165 ~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
...+++++++|++|+.||.|++|++... .+..+ ..+..+|.+++|+||+++|++++.|+
T Consensus 252 --~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------~~h~~~V~~~~~s~~~~~l~s~s~Dg 311 (317)
T d1vyhc1 252 --GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL------------------NAHEHFVTSLDFHKTAPYVVTGSVDQ 311 (317)
T ss_dssp --EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE------------------ECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred --EEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE------------------cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 2334567789999999999999986543 12222 12235689999999999999887765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=3.6e-16 Score=164.79 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=117.1
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCCeEEEEEcc-CceEE--------E-ecCCCcEEEEEEccCCCEEEEEEc--CCcEEE
Q 004298 22 SQIKIAEWNP--EKDLLAMATEDSKILLHRFN-WQRLW--------T-ISPGKSVTSLCWRPDGKAIAVGLE--DGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP--~~~lLA~~s~Dg~V~v~~l~-~~~v~--------~-~~~~~~V~~l~wspDG~~Lasg~~--Dg~V~l 87 (763)
..|++++|+| ++.+||+|+.||+|+||++. ++... . ..+...|.+++|+|+|+++++++. ++.+++
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence 4599999998 56799999999999999982 22111 1 126678999999999999988764 678999
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCc-eeccCCCCCcccCCceeecCCCCCCCC-CCCcccCCcccccCCcccccc
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQP-SKNDFGNIPTYEDRTSRFFPPAPRIPQ-MPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~-l~s~s~~~~~~~d~~i~~wd~~~~~~~-l~~~~s~~~~~~~~~~~~~~~ 165 (763)
|+.++++.+..+.+|...|+++.|+|++.. +++++ .|+.+++|+..+.... ......++.. .+..
T Consensus 144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------~d~~v~~~d~~~~~~~~~~~~~~~~~~-------~v~~ 210 (325)
T d1pgua1 144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG------DDGSVVFYQGPPFKFSASDRTHHKQGS-------FVRD 210 (325)
T ss_dssp EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE------TTTEEEEEETTTBEEEEEECSSSCTTC-------CEEE
T ss_pred EeecccccceeeeecccccccccccccccceEEEee------cccccccccccccccceecccccCCCC-------ccEE
Confidence 999999999999999999999999999875 56676 7999999987642100 0000011111 1222
Q ss_pred eecccCC-CeeEEEEEcCCCcEEEEEcCce
Q 004298 166 LANSSHQ-RFSILCSGDKDGSICFNIFGIF 194 (763)
Q Consensus 166 ~~~~~~~-~~~~L~sgs~DG~I~lw~~~~~ 194 (763)
+. +++ .++++++|+.||.|++|+....
T Consensus 211 v~--~~pd~~~~l~s~~~d~~i~iwd~~~~ 238 (325)
T d1pgua1 211 VE--FSPDSGEFVITVGSDRKISCFDGKSG 238 (325)
T ss_dssp EE--ECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred ee--eccccceeccccccccceeeeeeccc
Confidence 33 344 4678999999999999986543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=3.3e-16 Score=162.04 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=141.1
Q ss_pred ecCCCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc-Cce----EEEecCCCcEEEEEEccC-CCEEEEEEcCCcEEEE
Q 004298 15 QFDKPVASQIKIAEWNPEKDLLAMATEDSKILLHRFN-WQR----LWTISPGKSVTSLCWRPD-GKAIAVGLEDGTITLH 88 (763)
Q Consensus 15 ~~~k~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~----v~~~~~~~~V~~l~wspD-G~~Lasg~~Dg~V~lw 88 (763)
+...+..+.|++++|+|++++||+|+.||+|+||++. +.. .....|...|.+++|+|+ +++|++|+.||.|++|
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 3344445669999999999999999999999999983 222 223358899999999996 5689999999999999
Q ss_pred EccCCeEEEEecccCCc-eeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCC--CcccCCcccccCCcccccc
Q 004298 89 DVENGKLLRSLKSHTVA-VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMP--GLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 89 dve~g~~~~~l~~h~~~-V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~--~~~s~~~~~~~~~~~~~~~ 165 (763)
+...+........+... .....+.++...+++++ .++++++||.+....... ........ ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~wd~~~~~~~~~~~~~~~~~~~-------~~~~ 151 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS------WDGLIEVIDPRNYGDGVIAVKNLNSNNT-------KVKN 151 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE------TTSEEEEECHHHHTTBCEEEEESCSSSS-------SSCC
T ss_pred ecccccccccccccccccccccccccccccccccc------cccccceeeccccccceeeecccccccc-------ccee
Confidence 99988777766555443 44555667777788877 799999999754211100 00000000 0000
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeee--------------ee-cccccccccCCCCCceeeec---------
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKI--------------NI-HKFHVAIPNADEQGTCRLLN--------- 221 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~--------------~i-~~~~~~~~s~~~~~~~~l~~--------- 221 (763)
.........+.+++++.||.|++|+......... .. .........++.++.+.+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~ 231 (342)
T d1yfqa_ 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred eeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence 1112234556789999999999997653211100 00 00001112333455555543
Q ss_pred --------------------cceeeEEecCCCCEEEEEeecC
Q 004298 222 --------------------ASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 222 --------------------~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
..+.+++|||++++|++++.|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg 273 (342)
T d1yfqa_ 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC
Confidence 2467899999999999998877
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.68 E-value=2.7e-16 Score=162.21 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=119.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceE---EEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE--
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRL---WTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR-- 97 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v---~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~-- 97 (763)
.+.+++|+|+++++++++.||.|.+|++..+.+ ....|...|++++|+|+|++|++|+.||.|++||+.++....
T Consensus 138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 488999999999999999999999999965543 344588899999999999999999999999999998876553
Q ss_pred -EecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 98 -SLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 98 -~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
.+..|...|++++|+|++.++++++ .|+.+++||..............+. ...+..+ ..+++.+
T Consensus 218 ~~~~~h~~~v~~l~~s~~~~~l~sgs------~dg~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~---~~~~~~~ 282 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPDNVRLATGS------LDNSVIVWNMNKPSDHPIIIKGAHA------MSSVNSV---IWLNETT 282 (299)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTCTTSCCEEETTSST------TSCEEEE---EEEETTE
T ss_pred ccccccccccccccccccccceEEEc------CCCEEEEEECCCCCcceEEEecCCC------CCcEEEE---EECCCCE
Confidence 4567889999999999999999998 8999999998753211110000110 1111222 2234568
Q ss_pred EEEEcCCCcEEEEEc
Q 004298 177 LCSGDKDGSICFNIF 191 (763)
Q Consensus 177 L~sgs~DG~I~lw~~ 191 (763)
|++|+.||+|++|+.
T Consensus 283 l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 283 IVSAGQDSNIKFWNV 297 (299)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEEeCCCEEEEEec
Confidence 999999999999984
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=9.9e-16 Score=161.25 Aligned_cols=159 Identities=10% Similarity=0.002 Sum_probs=119.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC--eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDS--KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg--~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
+..|.+++|+|+|++|++++.++ .|++|+..+.++..+. +...|.+++|+|||++|++++.++.+++|++++++...
T Consensus 42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 121 (360)
T d1k32a3 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121 (360)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceee
Confidence 34599999999999998876553 6899999666665554 77889999999999999999999999999999999999
Q ss_pred EecccCCceeEEEeecCCCceeccCC----CCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 98 SLKSHTVAVVCLNWEEDAQPSKNDFG----NIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 98 ~l~~h~~~V~~l~ws~~~~~l~s~s~----~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
.+..|...+.+++|+|+|++++.+.. ......++.+++|+......... ..+.. ......++++
T Consensus 122 ~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---~~~~~---------~~~~~~~spd 189 (360)
T d1k32a3 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA---TTENS---------HDYAPAFDAD 189 (360)
T ss_dssp EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC---SCSSS---------BEEEEEECTT
T ss_pred eeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee---ccccc---------ccccccccCC
Confidence 99999999999999999998875421 12223566788898765311100 00000 0112235577
Q ss_pred eeEEEEEcCCCcEEEEEc
Q 004298 174 FSILCSGDKDGSICFNIF 191 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~ 191 (763)
++.|++++.++.+.+|+.
T Consensus 190 g~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 190 SKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp SCEEEEEESCCCCCEECS
T ss_pred CCEEEEEeCCCceEcccc
Confidence 888999999999988853
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.7e-15 Score=153.66 Aligned_cols=209 Identities=16% Similarity=0.145 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec-
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK- 100 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~- 100 (763)
|.+ +++++|++||+|+.||+|+||++ +++.+..+. |...|.+++|+|+ +|++|+.|+.+++|+...........
T Consensus 19 V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~ 95 (342)
T d2ovrb2 19 VIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG 95 (342)
T ss_dssp CEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc
Confidence 654 36667999999999999999999 777777776 7789999999875 88999998888888866543322211
Q ss_pred -------------------------------------------------------------------------------c
Q 004298 101 -------------------------------------------------------------------------------S 101 (763)
Q Consensus 101 -------------------------------------------------------------------------------~ 101 (763)
+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 175 (342)
T d2ovrb2 96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175 (342)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcC
Confidence 1
Q ss_pred cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc
Q 004298 102 HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD 181 (763)
Q Consensus 102 h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs 181 (763)
|.. ....+.+++..+++++ .|+.+++||..... ......++...+ ..+ ..+.++|++|+
T Consensus 176 ~~~--~~~~~~~~~~~l~s~~------~dg~i~~~d~~~~~--~~~~~~~~~~~v-------~~~----~~~~~~l~s~s 234 (342)
T d2ovrb2 176 HTN--RVYSLQFDGIHVVSGS------LDTSIRVWDVETGN--CIHTLTGHQSLT-------SGM----ELKDNILVSGN 234 (342)
T ss_dssp CSS--CEEEEEECSSEEEEEE------TTSCEEEEETTTCC--EEEEECCCCSCE-------EEE----EEETTEEEEEE
T ss_pred ccc--ccccccCCCCEEEEEe------CCCeEEEeecccce--eeeEecccccce-------eEE----ecCCCEEEEEc
Confidence 111 1223334455566665 67888888776421 111111221111 111 22346899999
Q ss_pred CCCcEEEEEcCceeeee-eeecc-----------cccccccCCCCCceeeec-------------------cceeeEEec
Q 004298 182 KDGSICFNIFGIFPIGK-INIHK-----------FHVAIPNADEQGTCRLLN-------------------ASIYKVALS 230 (763)
Q Consensus 182 ~DG~I~lw~~~~~~ig~-~~i~~-----------~~~~~~s~~~~~~~~l~~-------------------~~I~~v~~S 230 (763)
.||.|++|+........ +..+. .+..+.+++.++.+++|+ +.|.+++|+
T Consensus 235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s 314 (342)
T d2ovrb2 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314 (342)
T ss_dssp TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred CCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence 99999999866543221 11110 011234677889999997 248899999
Q ss_pred CCCCEEEEEeecCccccccCCCCCCcEEEEEeec
Q 004298 231 KDLFHLTVLCSGQLSQEELGGHGMHGLHCLVLDT 264 (763)
Q Consensus 231 pDg~~Llv~~~d~l~~~~~~~~~~~~l~~~~ld~ 264 (763)
||+..++++..++.. ...++++.+|.
T Consensus 315 ~~~~~la~g~~dGt~--------~~~l~~~Df~~ 340 (342)
T d2ovrb2 315 NTKLVCAVGSRNGTE--------ETKLLVLDFDV 340 (342)
T ss_dssp SSEEEEEEECSSSSS--------CCEEEEEECCC
T ss_pred CCCCEEEEEeCCCCC--------eeEEEEEeCCC
Confidence 998877777655411 12566666664
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=1.9e-15 Score=157.19 Aligned_cols=152 Identities=14% Similarity=0.240 Sum_probs=124.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEe
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSL 99 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l 99 (763)
..+....+.|.+.++++++.|+.|++|++ +++.+..+. |...|++++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence 45889999999999999999999999999 666677665 7789999999999999999999999999999998887765
Q ss_pred c--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEE
Q 004298 100 K--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSIL 177 (763)
Q Consensus 100 ~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (763)
. .|...|+++.|+|++.++++|+ .|+.+++||.... .......+|... +..+ .+++++++|
T Consensus 265 ~~~~~~~~i~~~~~s~~~~~l~~g~------~dg~i~iwd~~~~--~~~~~~~~H~~~-------V~~l--~~s~d~~~l 327 (340)
T d1tbga_ 265 SHDNIICGITSVSFSKSGRLLLAGY------DDFNCNVWDALKA--DRAGVLAGHDNR-------VSCL--GVTDDGMAV 327 (340)
T ss_dssp CCTTCCSCEEEEEECSSSCEEEEEE------TTSCEEEEETTTC--CEEEEECCCSSC-------EEEE--EECTTSSCE
T ss_pred ccccccCceEEEEECCCCCEEEEEE------CCCEEEEEECCCC--cEEEEEcCCCCC-------EEEE--EEeCCCCEE
Confidence 3 4567899999999999999998 8999999998652 111122233322 2223 345777899
Q ss_pred EEEcCCCcEEEEE
Q 004298 178 CSGDKDGSICFNI 190 (763)
Q Consensus 178 ~sgs~DG~I~lw~ 190 (763)
++|+.||+|++|+
T Consensus 328 ~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 328 ATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEccCCEEEEeC
Confidence 9999999999995
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=2.8e-15 Score=161.95 Aligned_cols=112 Identities=19% Similarity=0.325 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-------CCCcEEEEEEccCCCEEEEEEcCCc---EEEEEc
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-------PGKSVTSLCWRPDGKAIAVGLEDGT---ITLHDV 90 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-------~~~~V~~l~wspDG~~Lasg~~Dg~---V~lwdv 90 (763)
..+.+++|+|++ ++|+|+.|++|+||++ +++.+..+. |...|++++|+|||++|++|+.|++ |++||+
T Consensus 185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~ 263 (393)
T d1sq9a_ 185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 263 (393)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence 458899999998 8899999999999999 566666553 6678999999999999999999875 899999
Q ss_pred cCCeEEEEec-------------ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 91 ENGKLLRSLK-------------SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 91 e~g~~~~~l~-------------~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
++++.+..+. +|.+.|++++|+|+++++++++ .|+++++||..+
T Consensus 264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s------~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG------WDGKLRFWDVKT 320 (393)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE------TTSEEEEEETTT
T ss_pred ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC------CCCEEEEEECCC
Confidence 9999888774 7999999999999999999998 899999999876
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.9e-14 Score=142.35 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=64.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR 97 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~ 97 (763)
....|+|++ |++++||+|+.||+|+||++ +++.+..+. |...|++++| |+++|++|+.||.|++|++.++....
T Consensus 14 ~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~ 89 (293)
T d1p22a2 14 TSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 89 (293)
T ss_dssp SCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccc
Confidence 345588765 57899999999999999999 677788876 7889998876 77899999999999999999887665
Q ss_pred Eec
Q 004298 98 SLK 100 (763)
Q Consensus 98 ~l~ 100 (763)
...
T Consensus 90 ~~~ 92 (293)
T d1p22a2 90 TLI 92 (293)
T ss_dssp EEC
T ss_pred ccc
Confidence 554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=7.2e-15 Score=158.71 Aligned_cols=163 Identities=14% Similarity=0.194 Sum_probs=117.8
Q ss_pred CCeEEEEEcCCC-----CEEEEEeCCCeEEEEEccCc------------e---EEE-e----cCCCcEEEEEEccCCCEE
Q 004298 22 SQIKIAEWNPEK-----DLLAMATEDSKILLHRFNWQ------------R---LWT-I----SPGKSVTSLCWRPDGKAI 76 (763)
Q Consensus 22 ~~V~~l~~sP~~-----~lLA~~s~Dg~V~v~~l~~~------------~---v~~-~----~~~~~V~~l~wspDG~~L 76 (763)
..+..++|+++. +++++++.||.|.+|++... . +.. . .++..+.+++|+||| +|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~l 198 (393)
T d1sq9a_ 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 198 (393)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EE
Confidence 457788888764 67899999999999997311 1 111 1 134568999999998 89
Q ss_pred EEEEcCCcEEEEEccCCeEEEEe------cccCCceeEEEeecCCCceeccCCCCCcccCCc---eeecCCCCCC--CCC
Q 004298 77 AVGLEDGTITLHDVENGKLLRSL------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRT---SRFFPPAPRI--PQM 145 (763)
Q Consensus 77 asg~~Dg~V~lwdve~g~~~~~l------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~---i~~wd~~~~~--~~l 145 (763)
|+|+.||+|+|||+++++.+..+ .+|..+|++++|+|+++++++++ .|++ +++||..... ..+
T Consensus 199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs------~D~t~~~i~lwd~~~g~~~~~l 272 (393)
T d1sq9a_ 199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH------DSNSFGCITLYETEFGERIGSL 272 (393)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE------EETTEEEEEEEETTTCCEEEEE
T ss_pred EEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeec------CCCCcceeeecccccceeeeee
Confidence 99999999999999999887654 46889999999999999999998 6764 8999876421 110
Q ss_pred ---------CCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCce-eeeeee
Q 004298 146 ---------PGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGIF-PIGKIN 200 (763)
Q Consensus 146 ---------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~~-~ig~~~ 200 (763)
.....+|... +.. .++++++++|++|+.||+|++|+...- .+..+.
T Consensus 273 ~~~~~~~~~~~~~~gH~~~-------V~~--l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 273 SVPTHSSQASLGEFAHSSW-------VMS--LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 328 (393)
T ss_dssp CBC--------CCBSBSSC-------EEE--EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccccccccceeeeecccCc-------eee--eccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence 1111233332 223 345678889999999999999986643 333443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=1.4e-14 Score=152.37 Aligned_cols=181 Identities=11% Similarity=0.059 Sum_probs=130.4
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCC--cEEEEEccCCeEEEEeccc
Q 004298 26 IAEWNP-EKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDG--TITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 26 ~l~~sP-~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg--~V~lwdve~g~~~~~l~~h 102 (763)
.-.||| ||+++|+++ +|.|++|++.++.+..+.|+..|++++|+|||+.|++++.++ .|++||.++++.. .+..|
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~ 84 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 84 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCC
Confidence 467999 999999887 579999999888888888999999999999999999877554 7999999987765 56788
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEc-
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGD- 181 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs- 181 (763)
...|.+++|+|+++++++++ .++.+++|+....... .....+.. .+.. ..+++++++|+.++
T Consensus 85 ~~~v~~~~~spdg~~l~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~--~~~spdg~~la~~~~ 147 (360)
T d1k32a3 85 LGNVFAMGVDRNGKFAVVAN------DRFEIMTVDLETGKPT--VIERSREA-------MITD--FTISDNSRFIAYGFP 147 (360)
T ss_dssp CCSEEEEEECTTSSEEEEEE------TTSEEEEEETTTCCEE--EEEECSSS-------CCCC--EEECTTSCEEEEEEE
T ss_pred CceEEeeeecccccccceec------ccccccccccccccee--eeeecccc-------cccc--hhhccceeeeeeecc
Confidence 99999999999999999988 7999999988653111 11111111 1111 23456677777543
Q ss_pred ---------CCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 182 ---------KDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 182 ---------~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.++.+++|+...-...... .....+..++|||||++|++.+.++
T Consensus 148 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------------~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 148 LKHGETDGYVMQAIHVYDMEGRKIFAAT------------------TENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp ECSSTTCSCCEEEEEEEETTTTEEEECS------------------CSSSBEEEEEECTTSCEEEEEESCC
T ss_pred ccccceeeccccceeeeccccCceeeec------------------ccccccccccccCCCCEEEEEeCCC
Confidence 3445667764432221110 0113466789999999999887654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.1e-13 Score=145.24 Aligned_cols=158 Identities=14% Similarity=0.056 Sum_probs=118.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC--CCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCE-EEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNPEKDLLAMATE--DSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKA-IAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~--Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~-Lasg~~Dg~V~lwdve~g~~ 95 (763)
.++|.+++|+|++.++++++. ++.+.+|.. +++.+..+. |...|++++|+|++++ +++++.||.|++||..+++.
T Consensus 115 ~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~ 194 (325)
T d1pgua1 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194 (325)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred cCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccc
Confidence 345999999999999988765 567899998 677788776 7889999999999875 67789999999999998887
Q ss_pred EEEec---ccCCceeEEEeecC-CCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecc-c
Q 004298 96 LRSLK---SHTVAVVCLNWEED-AQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANS-S 170 (763)
Q Consensus 96 ~~~l~---~h~~~V~~l~ws~~-~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~-~ 170 (763)
...+. .|...|++++|+|+ +.++++++ .|+.+++||..... ......++...+ ....++ .
T Consensus 195 ~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~------~d~~i~iwd~~~~~--~~~~l~~~~~~v-------~~~~~s~~ 259 (325)
T d1pgua1 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVG------SDRKISCFDGKSGE--FLKYIEDDQEPV-------QGGIFALS 259 (325)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEE------TTCCEEEEETTTCC--EEEECCBTTBCC-------CSCEEEEE
T ss_pred ceecccccCCCCccEEeeeccccceeccccc------cccceeeeeecccc--cccccccccccc-------ccceeeee
Confidence 76654 45678999999997 57788887 89999999976531 111111222111 011111 1
Q ss_pred CCCeeEEEEEcCCCcEEEEEcCc
Q 004298 171 HQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
.+++.+|++|+.||+|++|+...
T Consensus 260 ~~dg~~l~s~s~D~~i~iwd~~~ 282 (325)
T d1pgua1 260 WLDSQKFATVGADATIRVWDVTT 282 (325)
T ss_dssp ESSSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCEEEEEeCCCeEEEEECCC
Confidence 24567899999999999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=6.9e-14 Score=145.46 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
|+|++ +++++||+|+.||+|+||++ +++.+..+. |...|++++|+|+ .+|++|+.||+|++|+..+++.......
T Consensus 16 itc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~ 92 (355)
T d1nexb2 16 ITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEG 92 (355)
T ss_dssp EEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccc
Confidence 45555 46889999999999999999 677778776 8889999999996 4899999999999999999888776654
Q ss_pred cC--CceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 102 HT--VAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 102 h~--~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+. ..+....+.+++..+++++ .|+.+++|+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~------~d~~i~iw~~~~ 127 (355)
T d1nexb2 93 HNSTVRCLDIVEYKNIKYIVTGS------RDNTLHVWKLPK 127 (355)
T ss_dssp CSSCEEEEEEEEETTEEEEEEEE------TTSEEEEEECCC
T ss_pred ccccccccccccccccceeeeec------CCCcEEEEEccC
Confidence 33 3445667788888898887 899999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=2.3e-13 Score=141.42 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=112.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCC
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTV 104 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~ 104 (763)
..+.+++++++++..|+.|.+|++ +++.+.... +...+.++.|+|+++.+++++.||.|++||.+++..+..+.+|..
T Consensus 165 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~ 244 (355)
T d1nexb2 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccc
Confidence 456678899999999999999999 555565554 567889999999999999999999999999999999999999999
Q ss_pred ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCC
Q 004298 105 AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDG 184 (763)
Q Consensus 105 ~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG 184 (763)
.|.++.|++ .++++++ .|+.+++||..........+..... .+. ...++..++++| .||
T Consensus 245 ~v~~~~~~~--~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~l~~g-~d~ 303 (355)
T d1nexb2 245 LVGLLRLSD--KFLVSAA------ADGSIRGWDANDYSRKFSYHHTNLS-----------AIT-TFYVSDNILVSG-SEN 303 (355)
T ss_dssp CCCEEEECS--SEEEEEC------TTSEEEEEETTTCCEEEEEECTTCC-----------CCC-EEEECSSEEEEE-ETT
T ss_pred ccccccccc--ceeeeee------cccccccccccccceecccccCCce-----------EEE-EEcCCCCEEEEE-eCC
Confidence 999999974 6788888 8999999998764322211111111 111 123445566666 489
Q ss_pred cEEEEEcCc
Q 004298 185 SICFNIFGI 193 (763)
Q Consensus 185 ~I~lw~~~~ 193 (763)
+|++|++..
T Consensus 304 ~i~vwd~~t 312 (355)
T d1nexb2 304 QFNIYNLRS 312 (355)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 999998654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=2.8e-13 Score=138.35 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=110.4
Q ss_pred EEEEcCCCCEEEEEeCCC-eEEEEEcc-CceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE-ec
Q 004298 26 IAEWNPEKDLLAMATEDS-KILLHRFN-WQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS-LK 100 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s~Dg-~V~v~~l~-~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~-l~ 100 (763)
..+++|+++.+++++.++ .|++|++. .+...... +...+++++|+|||++|++|+.||.|++||+.+++.... +.
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 202 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 202 (287)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence 356778888998888775 69999984 44444443 567899999999999999999999999999999887654 67
Q ss_pred ccCCceeEEEeecCC----------CceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceeccc
Q 004298 101 SHTVAVVCLNWEEDA----------QPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSS 170 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~----------~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~ 170 (763)
.|...|.+++|+|.+ .++++|+ .|+++++|+....... .....+|.. .+..+.+
T Consensus 203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs------~D~~i~iw~~~~~~~~-~~~~~~h~~-------~V~~v~~-- 266 (287)
T d1pgua2 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGS------LDTNIFIYSVKRPMKI-IKALNAHKD-------GVNNLLW-- 266 (287)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEE------TTSCEEEEESSCTTCC-EEETTSSTT-------CEEEEEE--
T ss_pred ccccccceeeecccccccccccCCCCeeEeec------CCCeEEEEECCCCCeE-EEEeCCCCC-------CeEEEEE--
Confidence 899999999999754 4677887 8999999997642211 111123322 2233433
Q ss_pred CCCeeEEEEEcCCCcEEEEE
Q 004298 171 HQRFSILCSGDKDGSICFNI 190 (763)
Q Consensus 171 ~~~~~~L~sgs~DG~I~lw~ 190 (763)
.++. .|++++.||+|++|+
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp EETT-EEEEEETTSCEEEEE
T ss_pred CCCC-EEEEEECCCeEEEEE
Confidence 3443 588899999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=6.3e-13 Score=135.69 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEe--cCCCcEEEEEEccCC----------CEEEEEEcCCcE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTI--SPGKSVTSLCWRPDG----------KAIAVGLEDGTI 85 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~--~~~~~V~~l~wspDG----------~~Lasg~~Dg~V 85 (763)
+..+.|++++|+|++++||+++.||.|++|++ +++.+... .|...|++++|+|++ ++|++|+.||+|
T Consensus 160 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i 239 (287)
T d1pgua2 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239 (287)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCE
T ss_pred ccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeE
Confidence 34456999999999999999999999999999 44444332 267889999998754 689999999999
Q ss_pred EEEEccC-CeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCC
Q 004298 86 TLHDVEN-GKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPP 138 (763)
Q Consensus 86 ~lwdve~-g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~ 138 (763)
++||+++ ++.+..+.+|...|+++.|+|++. +++++ .|+.+++|++
T Consensus 240 ~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g------~D~~v~iW~i 286 (287)
T d1pgua2 240 FIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG------ADACIKRWNV 286 (287)
T ss_dssp EEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE------TTSCEEEEEE
T ss_pred EEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE------CCCeEEEEEE
Confidence 9999976 667788889999999999999875 56666 7999999975
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.6e-11 Score=125.85 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=83.3
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcc-CceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe----
Q 004298 23 QIKIAEWNPEK-DLLAMATEDSKILLHRFN-WQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK---- 94 (763)
Q Consensus 23 ~V~~l~~sP~~-~lLA~~s~Dg~V~v~~l~-~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~---- 94 (763)
.|.+++|+|++ .++++|+.||.|.+|++. +....... +........+.+++..+++++.|+++++||++++.
T Consensus 58 ~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~ 137 (342)
T d1yfqa_ 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred CEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccccee
Confidence 49999999875 589999999999999993 33333333 33445666778889999999999999999987433
Q ss_pred EEEEeccc--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 95 LLRSLKSH--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 95 ~~~~l~~h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.......+ ........+.+++..+++++ .|+.+++|+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~i~~~~~~~ 179 (342)
T d1yfqa_ 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGM------NNSQVQWFRLPL 179 (342)
T ss_dssp EEEESCSSSSSSCCCEEEEEECSSEEEEEE------STTEEEEEESSC
T ss_pred eecccccccccceeeeeeeeccCCceeeec------CCCcEEEEeccc
Confidence 22333332 23456677788888888887 899999998764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.6e-11 Score=126.29 Aligned_cols=150 Identities=15% Similarity=0.267 Sum_probs=108.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc-
Q 004298 25 KIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS- 101 (763)
Q Consensus 25 ~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~- 101 (763)
....+++++..+++++.||.|++|++ .++.+.... |...|.++.|+ +++|++|+.||.|++||+.+++....+..
T Consensus 179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 256 (342)
T d2ovrb2 179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP 256 (342)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccc
Confidence 34556677899999999999999999 556666655 56678877665 46999999999999999999888887765
Q ss_pred --cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCC--CCCCCc-ccCCcccccCCcccccceecccCCCeeE
Q 004298 102 --HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRI--PQMPGL-VSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 102 --h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~--~~l~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
|...+.++.|+ +.++++++ .|+++++||+.+.. ..+... ..++.. .+. ...+++++.+
T Consensus 257 ~~~~~~~~~~~~~--~~~~~s~s------~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~-------~v~--~v~~s~~~~~ 319 (342)
T d2ovrb2 257 NKHQSAVTCLQFN--KNFVITSS------DDGTVKLWDLKTGEFIRNLVTLESGGSGG-------VVW--RIRASNTKLV 319 (342)
T ss_dssp TSCSSCEEEEEEC--SSEEEEEE------TTSEEEEEETTTCCEEEEEEECTTGGGTC-------EEE--EEEECSSEEE
T ss_pred ceeeeceeecccC--CCeeEEEc------CCCEEEEEECCCCCEEEEEecccCCCCCC-------CEE--EEEECCCCCE
Confidence 44566666665 56888888 89999999987531 111100 011111 122 2345678899
Q ss_pred EEEEcCCCc----EEEEEcCc
Q 004298 177 LCSGDKDGS----ICFNIFGI 193 (763)
Q Consensus 177 L~sgs~DG~----I~lw~~~~ 193 (763)
+++|+.||+ |++|+|+.
T Consensus 320 la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCCCeeEEEEEeCCC
Confidence 999999986 88998763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.29 E-value=3.2e-10 Score=115.03 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLA-MATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA-~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~ 98 (763)
..+..++|+|+|++++ +++.++.|.+|++ +++.+..+..+..+..++|++||+.++++ ..++.+.+|+..+++....
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeee
Confidence 3478999999999775 5667899999999 67777888777788999999999976655 4778899999999999988
Q ss_pred ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 99 LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 99 l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+..+ ..+.++.|+|++..+.... ..++.+.+|+...
T Consensus 112 ~~~~-~~~~~~~~~~dg~~~~~~~-----~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 112 VKTG-KSPLGLALSPDGKKLYVTN-----NGDKTVSVINTVT 147 (301)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEE-----TTTTEEEEEETTT
T ss_pred cccc-ccceEEEeecCCCeeeeee-----ccccceeeeeccc
Confidence 8654 5678999999998765433 1577788887654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=1.8e-11 Score=133.82 Aligned_cols=189 Identities=12% Similarity=0.023 Sum_probs=121.9
Q ss_pred cCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCe--EEEEec---ccC
Q 004298 30 NPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGK--LLRSLK---SHT 103 (763)
Q Consensus 30 sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~--~~~~l~---~h~ 103 (763)
+++.-++++.+.+|+|.||+. +++.+..+..+..+..++|||||+++++++.||+|++||+.+++ ....++ .|.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 333334578899999999999 67888888888889999999999999999999999999998876 333333 455
Q ss_pred CceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcc--cccceecccCCCe-eEEEE
Q 004298 104 VAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSED--SFRELANSSHQRF-SILCS 179 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~-~~L~s 179 (763)
+.+.+..|+|||+++ ++++ .++++++||....... .....+......... .-.......++++ .++++
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~------~~~~v~i~d~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs 180 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPK--KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEE--EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CeEEecccCCCCCEEEEEcC------CCCeEEEEeCccccce--eeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence 566777788999976 5555 7999999998752110 000011000000000 0000111223333 34566
Q ss_pred EcCCCcEEEEEcCceeeeee-eecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 180 GDKDGSICFNIFGIFPIGKI-NIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 180 gs~DG~I~lw~~~~~~ig~~-~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.+.+|.|.+|+........+ .+. .+ .....++|+|||+++++++.++
T Consensus 181 ~~~~~~i~~~d~~~~~~~~~~~i~-------~g----------~~~~~~~~spdg~~~~va~~~~ 228 (432)
T d1qksa2 181 VKETGKILLVDYTDLNNLKTTEIS-------AE----------RFLHDGGLDGSHRYFITAANAR 228 (432)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEE-------CC----------SSEEEEEECTTSCEEEEEEGGG
T ss_pred EccCCeEEEEEccCCCcceEEEEc-------cc----------CccccceECCCCCEEEEecccc
Confidence 77788998887654322211 100 00 1256789999999999987654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.9e-11 Score=120.39 Aligned_cols=71 Identities=31% Similarity=0.418 Sum_probs=63.7
Q ss_pred CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 60 PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 60 ~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+...|+|+ ++||++||+|+.||+|+|||++++++++++++|.+.|++++| +++++++++ .|+.+++|+..
T Consensus 14 ~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s------~D~~i~~~~~~ 83 (293)
T d1p22a2 14 TSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS------SDSTVRVWDVN 83 (293)
T ss_dssp SCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE------TTSCEEEEESS
T ss_pred CCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccc------ccccccccccc
Confidence 55678876 568999999999999999999999999999999999999988 567899998 89999999876
Q ss_pred C
Q 004298 140 P 140 (763)
Q Consensus 140 ~ 140 (763)
.
T Consensus 84 ~ 84 (293)
T d1p22a2 84 T 84 (293)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.21 E-value=5.7e-10 Score=121.69 Aligned_cols=78 Identities=15% Similarity=0.031 Sum_probs=62.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc--eEEEecCCCc----EEEEEEccCCCEE-EEEEcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQ--RLWTISPGKS----VTSLCWRPDGKAI-AVGLEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~--~v~~~~~~~~----V~~l~wspDG~~L-asg~~Dg~V~lwdve~g~ 94 (763)
.+..++|||||+++++++.|+.|.+|++ +++ .+..+..+.. +.+..|+|||++| ++++.+++|++||.++++
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~ 142 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence 4899999999999999999999999998 333 4556665544 4445567799986 677889999999999988
Q ss_pred EEEEec
Q 004298 95 LLRSLK 100 (763)
Q Consensus 95 ~~~~l~ 100 (763)
.+..+.
T Consensus 143 ~~~~~~ 148 (432)
T d1qksa2 143 PKKIQS 148 (432)
T ss_dssp EEEEEE
T ss_pred ceeeec
Confidence 876654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=5.2e-10 Score=121.34 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCc--eEEEecCCC----cEEEEEEccCCCEEEEE-EcCCcEEEEEccCCe
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQ--RLWTISPGK----SVTSLCWRPDGKAIAVG-LEDGTITLHDVENGK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~--~v~~~~~~~----~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~ 94 (763)
.+..++|||||+++++++.|++|++|++ +++ .+..+..+. .+.+++|+|||++++++ +.++.+++||.++++
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~ 142 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence 4899999999999999999999999999 444 344555443 35566778899987655 489999999999998
Q ss_pred EEEEecccC
Q 004298 95 LLRSLKSHT 103 (763)
Q Consensus 95 ~~~~l~~h~ 103 (763)
.+..+..|.
T Consensus 143 ~~~~~~~~~ 151 (426)
T d1hzua2 143 PKQIVSTRG 151 (426)
T ss_dssp EEEEEECCE
T ss_pred eeEEeeccC
Confidence 887776544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=4e-11 Score=130.37 Aligned_cols=107 Identities=10% Similarity=-0.025 Sum_probs=86.4
Q ss_pred EcCCC--CEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEE--Ee---c
Q 004298 29 WNPEK--DLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLR--SL---K 100 (763)
Q Consensus 29 ~sP~~--~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~--~l---~ 100 (763)
++++. -++++++.||+|.||++ +++.+..+..+..+.+++|+|||+++++++.||+|++||+.+++... .+ .
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~ 105 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 105 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence 44443 34567888999999999 78888999888889999999999999999999999999999887433 33 2
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+|...+.++.|+|||+++++++ ..++.+++||...
T Consensus 106 ~~~~~~~s~~~spDG~~l~v~~-----~~~~~v~i~d~~~ 140 (426)
T d1hzua2 106 EARSVESSKFKGYEDRYTIAGA-----YWPPQFAIMDGET 140 (426)
T ss_dssp EEEEEEECCSTTCTTTEEEEEE-----EESSEEEEEETTT
T ss_pred CCcceEEeeeecCCCCEEEEee-----cCCCeEEEEcCCc
Confidence 4556677888899999875543 3789999999775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=4.3e-10 Score=115.78 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=81.1
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCeEEEEEc-cCceEEEecC------CCcEEEEEEccCCCEEEEEE------------cC
Q 004298 23 QIKIAEWNPEKDLL-AMATEDSKILLHRF-NWQRLWTISP------GKSVTSLCWRPDGKAIAVGL------------ED 82 (763)
Q Consensus 23 ~V~~l~~sP~~~lL-A~~s~Dg~V~v~~l-~~~~v~~~~~------~~~V~~l~wspDG~~Lasg~------------~D 82 (763)
.+..++|+|||+++ ++++.++.|.+|++ +++.++.+.. +..+..++|+|||++++++. .+
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence 36789999999987 45678899999999 7777777652 23456799999999998876 46
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
+.+.+||..+++....+.. ...+.++.|+|+|+++++++
T Consensus 115 ~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES
T ss_pred cceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEc
Confidence 7899999999999988865 56788999999999888775
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.2e-09 Score=112.53 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcc-Cc----eEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCC
Q 004298 21 ASQIKIAEWNPEKDLLAMA-TEDSKILLHRFN-WQ----RLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~-s~Dg~V~v~~l~-~~----~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
++.|..++|||||++|+++ ..|+.|.+|++. .. .+.....+..+.+++|+|||++|++++ .++.|.+|+....
T Consensus 36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~ 115 (333)
T d1ri6a_ 36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 115 (333)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence 3458999999999988554 458999999983 22 222334566778899999999999988 5778999998876
Q ss_pred eEEEE--ecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 94 KLLRS--LKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 94 ~~~~~--l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
..... ...+...+.++.++|+++.+..++ ..+..+.+|+...
T Consensus 116 ~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~-----~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 116 LPVGVVDVVEGLDGCHSANISPDNRTLWVPA-----LKQDRICLFTVSD 159 (333)
T ss_dssp EEEEEEEEECCCTTBCCCEECTTSSEEEEEE-----GGGTEEEEEEECT
T ss_pred cceecccccCCCccceEEEeeecceeeeccc-----cccceeeEEEecc
Confidence 65443 335667888999999999877664 2456677776543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.09 E-value=9e-10 Score=113.77 Aligned_cols=95 Identities=8% Similarity=0.000 Sum_probs=76.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec--CCCcEEEEEEccCCCEEEEE-EcCCcEEEEEccCCeEEEEeccc
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS--PGKSVTSLCWRPDGKAIAVG-LEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~--~~~~V~~l~wspDG~~Lasg-~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
++|+++++++++++.+++|.||++ +++.+..+. ++..+.+++|+|||++++++ +.++.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 478999999999999999999999 455555543 56678899999999987555 57899999999999998877543
Q ss_pred C------CceeEEEeecCCCceecc
Q 004298 103 T------VAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 103 ~------~~V~~l~ws~~~~~l~s~ 121 (763)
. ..+..++|+|||+.++.+
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~ 106 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYAT 106 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEE
Confidence 2 245678999999876544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.99 E-value=7.6e-09 Score=104.58 Aligned_cols=171 Identities=11% Similarity=0.093 Sum_probs=115.9
Q ss_pred EEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEE-EEEcCCcEEEEEccCCeEEEEecccCCceeEEEeec
Q 004298 36 LAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIA-VGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEE 113 (763)
Q Consensus 36 LA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~La-sg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~ 113 (763)
.++.+.|++|.||++ +++.+..+..+..+.+++|+|||++|+ +++.++.|++||+.+++.++.+..|. .+..+.|++
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence 345678899999998 777778888888899999999999885 55689999999999999999998764 568999999
Q ss_pred CCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCee-EEEEEcCCCcEEEEEcC
Q 004298 114 DAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFS-ILCSGDKDGSICFNIFG 192 (763)
Q Consensus 114 ~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~L~sgs~DG~I~lw~~~ 192 (763)
++..++..+ ..++.+.+|+...... ......... . ....+.+++. +++++..++.+.+|+..
T Consensus 84 ~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~--------~--~~~~~~~dg~~~~~~~~~~~~~~~~~~~ 146 (301)
T d1l0qa2 84 DGKQVYVTN-----MASSTLSVIDTTSNTV--AGTVKTGKS--------P--LGLALSPDGKKLYVTNNGDKTVSVINTV 146 (301)
T ss_dssp TSSEEEEEE-----TTTTEEEEEETTTTEE--EEEEECSSS--------E--EEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ccccccccc-----cccceeeeccccccee--eeecccccc--------c--eEEEeecCCCeeeeeeccccceeeeecc
Confidence 998655433 1678888888764210 000000000 0 1122334444 55667778888888765
Q ss_pred ceee-eeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeecC
Q 004298 193 IFPI-GKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSGQ 243 (763)
Q Consensus 193 ~~~i-g~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d~ 243 (763)
.... ..+... ..+..+.++||++.++++..+.
T Consensus 147 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 147 TKAVINTVSVG-------------------RSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp TTEEEEEEECC-------------------SSEEEEEECTTSSEEEEEETTT
T ss_pred ccceeeecccC-------------------CCceEEEeeccccceeeecccc
Confidence 4432 222111 1245677888888887776553
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.86 E-value=7.5e-08 Score=100.86 Aligned_cols=113 Identities=4% Similarity=-0.155 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCCEEEEEe-----CCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEc----------CCcEE
Q 004298 23 QIKIAEWNPEKDLLAMAT-----EDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLE----------DGTIT 86 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s-----~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~----------Dg~V~ 86 (763)
.+..++++|++..+++.. ..+.|++|+. +++.+..+..+ ....++|+|||++|++++. ++.|.
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~ 100 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEE
Confidence 488899999999887653 3457999998 77777776533 3447999999999999753 57899
Q ss_pred EEEccCCeEEEEecccCCce-------eEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 87 LHDVENGKLLRSLKSHTVAV-------VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 87 lwdve~g~~~~~l~~h~~~V-------~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
+||..+++.+..+..+.... ..+.|+++++.+..... ..++.+.+|+...
T Consensus 101 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~----~~~~~~~~~~~~~ 157 (373)
T d2madh_ 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF----AAGPAVGLVVQGG 157 (373)
T ss_pred EEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE----cCCCceEEeeccC
Confidence 99999999998887665443 45677888875543320 0345666666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.7e-08 Score=103.59 Aligned_cols=101 Identities=10% Similarity=0.062 Sum_probs=74.5
Q ss_pred EEEEEeCCCeEEEEEccC----ceEEEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCCeEEEE---ecccCCce
Q 004298 35 LLAMATEDSKILLHRFNW----QRLWTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENGKLLRS---LKSHTVAV 106 (763)
Q Consensus 35 lLA~~s~Dg~V~v~~l~~----~~v~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g~~~~~---l~~h~~~V 106 (763)
.+++++.|++|++|+++. +.+..+.+++.+.+|+|+|||++|++++ .|+.|++|++..+....+ ...+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 346677899999999843 2344556888999999999999996666 589999999986532222 12334568
Q ss_pred eEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 107 VCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 107 ~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
.+++|+|+|+++++++ +.++.+.+|+...
T Consensus 86 ~~l~~spDg~~l~v~~-----~~~~~v~~~~~~~ 114 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGS-----YNAGNVSVTRLED 114 (333)
T ss_dssp SEEEECTTSSEEEEEE-----TTTTEEEEEEEET
T ss_pred eEEEEcCCCCEEeecc-----cCCCceeeecccc
Confidence 8999999999887775 2567788776543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.78 E-value=1.1e-08 Score=104.77 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=72.4
Q ss_pred CEEEEEeCCCeEEEEEc-cCceEEEec---CCCcEEEEEEccCCCEEE-EEEcCCcEEEEEccCCeEEEEecccC-----
Q 004298 34 DLLAMATEDSKILLHRF-NWQRLWTIS---PGKSVTSLCWRPDGKAIA-VGLEDGTITLHDVENGKLLRSLKSHT----- 103 (763)
Q Consensus 34 ~lLA~~s~Dg~V~v~~l-~~~~v~~~~---~~~~V~~l~wspDG~~La-sg~~Dg~V~lwdve~g~~~~~l~~h~----- 103 (763)
+++++++.|++|.||++ +++.+..+. ++..+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 57899999999999999 566666664 456688999999999875 55689999999999999998887653
Q ss_pred CceeEEEeecCCCceeccC
Q 004298 104 VAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 104 ~~V~~l~ws~~~~~l~s~s 122 (763)
..+..++|+|+++.++.+.
T Consensus 82 ~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp ECTTCEEECTTSSEEEEEE
T ss_pred cceeeEEEcCCCcEEEEee
Confidence 2456788999998877664
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.68 E-value=2.7e-07 Score=95.58 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEec-C-------CCcEEEEEEccCCCEEEEEE--cC
Q 004298 24 IKIAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTIS-P-------GKSVTSLCWRPDGKAIAVGL--ED 82 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~-~-------~~~V~~l~wspDG~~Lasg~--~D 82 (763)
+..++|||||++|++++ .|+.|.+|++ +++.+..+. + +.....++|+|||++++++. .+
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 128 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence 34689999999888654 4788999999 666666553 1 22345689999999888875 56
Q ss_pred CcEEEEEccCCeEEEEecccCC-------ceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccc
Q 004298 83 GTITLHDVENGKLLRSLKSHTV-------AVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGF 155 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~-------~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~ 155 (763)
+.+.+|+..+++.+..+..+.. ....+.+++++..+.... ..++.+..++....... ....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~-----~~~~~~~~~~~~~~~~~-------~~~~ 196 (355)
T d2bbkh_ 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF-----GTEGTPEITHTEVFHPE-------DEFL 196 (355)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEEC-----CSSSCCEEEECCCCSCT-------TSCB
T ss_pred ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEe-----cCCCeEEEEecccccce-------ecce
Confidence 7899999999999888765432 233456677766554332 13344444433221000 0000
Q ss_pred ccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc
Q 004298 156 TDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI 193 (763)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~ 193 (763)
. ... ...+....++.++.+|++++|+...
T Consensus 197 ~-------~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 225 (355)
T d2bbkh_ 197 I-------NHP--AYSQKAGRLVWPTYTGKIHQIDLSS 225 (355)
T ss_dssp C-------SCC--EEETTTTEEEEEBTTSEEEEEECTT
T ss_pred e-------eec--cccCCCCeEEEecCCCeEEEEecCC
Confidence 0 001 1123334567778888888887554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.45 E-value=1e-06 Score=95.77 Aligned_cols=107 Identities=12% Similarity=0.193 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEec------CCCcEEEEEEccCCCEEEEEEc---------CCcEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLE---------DGTITL 87 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~---------Dg~V~l 87 (763)
-..+.|.|++.++. ..++.+.+|+. +++....+. ++..|.++.|||||++|+.++. ++.+.|
T Consensus 19 ~~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 19 LYSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 34588999998765 46788999999 444433332 3467999999999999999864 577899
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCC
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAP 140 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~ 140 (763)
||+++++. ..+..|...+..+.|+|||+.++... ++.+.+|+...
T Consensus 97 ~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-------~~~l~~~~~~~ 141 (470)
T d2bgra1 97 YDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-------NNDIYVKIEPN 141 (470)
T ss_dssp EETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-------TTEEEEESSTT
T ss_pred EECCCCcc-cccccCCccccccccccCcceeeEee-------cccceEEECCC
Confidence 99998874 56778889999999999999999864 77788887664
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.35 E-value=1.6e-06 Score=92.89 Aligned_cols=202 Identities=10% Similarity=-0.042 Sum_probs=125.8
Q ss_pred CCCeEEEEEcCCCC--EEEEEeCCC-----------------eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEE
Q 004298 21 ASQIKIAEWNPEKD--LLAMATEDS-----------------KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGL 80 (763)
Q Consensus 21 ~~~V~~l~~sP~~~--lLA~~s~Dg-----------------~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~ 80 (763)
...+..++|+|+++ +++..+.+. .+..++. +.+..|.+.-+.....++|+|||+++++++
T Consensus 115 g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~ 194 (441)
T d1qnia2 115 VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTC 194 (441)
T ss_dssp CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEe
Confidence 45689999999997 444444332 1233555 556677777666788999999999998887
Q ss_pred cC-----------------------------------------CcEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 81 ED-----------------------------------------GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 81 ~D-----------------------------------------g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.+ +.+.+++..+.+.+..+....+ ...+..+|||++++
T Consensus 195 ~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~ 273 (441)
T d1qnia2 195 YNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFI 273 (441)
T ss_dssp SCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEE
T ss_pred cCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEE
Confidence 43 3445555555667777766443 57899999999775
Q ss_pred ccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc------
Q 004298 120 NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI------ 193 (763)
Q Consensus 120 s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~------ 193 (763)
.++ ..++++.+||...-...+..............+...-.+...++++++.+.+...|..|..|.++.
T Consensus 274 ~~~-----~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~ 348 (441)
T d1qnia2 274 ANG-----KLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYN 348 (441)
T ss_dssp EEC-----TTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred EeC-----CcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhc
Confidence 443 279999999975411000000011111111112222234445678889999999999999998642
Q ss_pred -----eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 194 -----FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 194 -----~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
..+.+++++-.++|. ..+...+++|||++|+.++.
T Consensus 349 ~~~~~~v~~~~~v~y~~GH~-------------~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 349 GDRVNYIRQKLDVQYQPGHN-------------HASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp TCCCCCEEEEEECSSCEEEE-------------EETTTTSTTCCCCEEEEEES
T ss_pred cCCCceeEeccccccCCCCC-------------ccccccccCCCCcEEEecCc
Confidence 123334443322222 22445678999999999954
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.31 E-value=4.7e-06 Score=87.17 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=62.8
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEEc-cCceEEEec-C-------CCcEEEEEEccCCCEEEEEE-cCCcE
Q 004298 26 IAEWNPEKDLLAMAT----------EDSKILLHRF-NWQRLWTIS-P-------GKSVTSLCWRPDGKAIAVGL-EDGTI 85 (763)
Q Consensus 26 ~l~~sP~~~lLA~~s----------~Dg~V~v~~l-~~~~v~~~~-~-------~~~V~~l~wspDG~~Lasg~-~Dg~V 85 (763)
.++|+|+|+.+++++ .|+.|.+|+. +++.+..+. + +.....++|+|||++++++. .++.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 589999999988765 3678999998 677777764 1 22345699999999998886 67999
Q ss_pred EEEEccCCeEEEEecccC
Q 004298 86 TLHDVENGKLLRSLKSHT 103 (763)
Q Consensus 86 ~lwdve~g~~~~~l~~h~ 103 (763)
.+||+.+++.+..+..+.
T Consensus 149 ~~~d~~~~~~~~~~~~~~ 166 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSAS 166 (368)
T ss_dssp EEEEETTTEEEEEEECSS
T ss_pred EEEECCCCcEeEEeeccC
Confidence 999999999998887654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=5.9e-05 Score=74.33 Aligned_cols=95 Identities=19% Similarity=0.337 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCEEEEEeCCC---eEEEEEccCceE-EEecCCCcEEEEEEccCCCEEEEEEc-CCcEEEEEcc--CCeEE
Q 004298 24 IKIAEWNPEKDLLAMATEDS---KILLHRFNWQRL-WTISPGKSVTSLCWRPDGKAIAVGLE-DGTITLHDVE--NGKLL 96 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg---~V~v~~l~~~~v-~~~~~~~~V~~l~wspDG~~Lasg~~-Dg~V~lwdve--~g~~~ 96 (763)
+...+|||||+.||...... .+.+.+..+... ....+........|+|||+.++.... ++...++... .....
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~ 120 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 120 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce
Confidence 78899999999999876543 466666654444 33446677889999999998887663 4443333332 23332
Q ss_pred EEecccCCceeEEEeecCCCcee
Q 004298 97 RSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 97 ~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
. ...+........|++++....
T Consensus 121 ~-~~~~~~~~~~~~~~~~~~~~~ 142 (269)
T d2hqsa1 121 Q-VTDGRSNNTEPTWFPDSQNLA 142 (269)
T ss_dssp E-CCCCSSCEEEEEECTTSSEEE
T ss_pred e-eeeccccccccccccccccce
Confidence 2 223344455566777665443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.14 E-value=3.9e-06 Score=85.45 Aligned_cols=80 Identities=5% Similarity=0.050 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecc
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKS 101 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~ 101 (763)
.+..+.++|++..++.+. ++.|.+|+. +++.+..+.++..+.+++|+|||+++++|+.||.|++||+++++.+.+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 253 LYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp CEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred eeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 478899999998887765 467999999 777788888888899999999999999999999999999999999999875
Q ss_pred cC
Q 004298 102 HT 103 (763)
Q Consensus 102 h~ 103 (763)
..
T Consensus 332 p~ 333 (346)
T d1jmxb_ 332 PG 333 (346)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.14 E-value=2.2e-06 Score=93.11 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 21 ASQIKIAEWNPEKDLLAMATE---------DSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~---------Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
...|.++.|||||+.||.+++ ++.+.+|++.++.+..+. +...+..+.|||||+.||.. .++.+++|+.
T Consensus 61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~ 139 (470)
T d2bgra1 61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (470)
T ss_dssp SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEEC
Confidence 345899999999999998754 467889999777776665 66779999999999999996 5678999999
Q ss_pred cCCeEEEEeccc------------------CCceeEEEeecCCCceeccC
Q 004298 91 ENGKLLRSLKSH------------------TVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 91 e~g~~~~~l~~h------------------~~~V~~l~ws~~~~~l~s~s 122 (763)
.+|+..+....+ .+....+.|+|||+.++...
T Consensus 140 ~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 988776543221 23346688999999988754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.11 E-value=0.00034 Score=70.65 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC--CeEE
Q 004298 19 PVASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN--GKLL 96 (763)
Q Consensus 19 ~~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~--g~~~ 96 (763)
|.+..+..++++|+|+++++...+++|+.++.++...........+.+++|+|||++++++..++.+..|+... +...
T Consensus 25 p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 25 PVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 33456889999999999999999999988887776555555667899999999999999999999998888653 2222
Q ss_pred EEec-ccCCceeEEEeecCCCceeccC
Q 004298 97 RSLK-SHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 97 ~~l~-~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.... ........+.+.+++++.++.+
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~ 131 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADS 131 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeecc
Confidence 2211 2345678899999998777654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.08 E-value=1.2e-05 Score=83.51 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCEEE----------EEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCE--EEEEEcCCcEEEEEc
Q 004298 24 IKIAEWNPEKDLLA----------MATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKA--IAVGLEDGTITLHDV 90 (763)
Q Consensus 24 V~~l~~sP~~~lLA----------~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~--Lasg~~Dg~V~lwdv 90 (763)
...++++|++..++ ....++.|.+|+. +++.+..+.++..+.+++|+|||+. +++++.|++|++||+
T Consensus 269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 45567777766554 3445668899998 7888999999999999999999994 467889999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecC
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEED 114 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~ 114 (763)
.+|+.++++..+....+.++..++
T Consensus 349 ~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 349 GAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCCCEEEEECCCCCCCcEEEEecC
Confidence 999999999988777777776543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.08 E-value=3.5e-06 Score=86.80 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC----------CeEEEEEc-cCceEEEecCCCcEEEEEEccCCC--EEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATED----------SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGK--AIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~D----------g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~--~Lasg~~Dg~V~lwd 89 (763)
....++++|++..++....+ +.|.+|+. +++.+..+..+..+.+++|+|||+ ++++++.|++|++||
T Consensus 250 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence 34568999999888766543 36999998 677888888778899999999998 456667899999999
Q ss_pred ccCCeEEEEecccCCceeEEEeecC
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEED 114 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~ 114 (763)
+++|+.++++..+.....++...++
T Consensus 330 ~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 330 AESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp TTTCCEEEEECCCCSSCCEEECCCC
T ss_pred CCCCCEEEEEeCcCCCccEEEeCCC
Confidence 9999999999877666666665543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.0018 Score=63.17 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=56.3
Q ss_pred eEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEcCC---cEEEEEccCCeEEEEecccCCceeEEEeecCCCcee
Q 004298 44 KILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLEDG---TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSK 119 (763)
Q Consensus 44 ~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~Dg---~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~ 119 (763)
.|+|.+.+|.....+. ....+.+.+|||||+.||...... .+.+.+...+.. ..+..+...+....|+|+|..++
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~ 98 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLA 98 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeee
Confidence 5777777766555553 456688999999999999876433 466667665554 44555678889999999998776
Q ss_pred ccC
Q 004298 120 NDF 122 (763)
Q Consensus 120 s~s 122 (763)
...
T Consensus 99 ~~~ 101 (269)
T d2hqsa1 99 FAL 101 (269)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.53 E-value=0.0028 Score=61.81 Aligned_cols=92 Identities=16% Similarity=0.238 Sum_probs=65.5
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEEccCceEEEec-CCCcEEEEEEccCCCEEEEEEc-CC-----cEEEEEccCCeEEEE
Q 004298 28 EWNPE--KDLLAMATEDSKILLHRFNWQRLWTIS-PGKSVTSLCWRPDGKAIAVGLE-DG-----TITLHDVENGKLLRS 98 (763)
Q Consensus 28 ~~sP~--~~lLA~~s~Dg~V~v~~l~~~~v~~~~-~~~~V~~l~wspDG~~Lasg~~-Dg-----~V~lwdve~g~~~~~ 98 (763)
..||+ |+.+|..+ +|.|+++++.+.....+. +...+...+|||||+.||.... ++ .|.+++..+|+...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~- 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR- 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-
Confidence 45788 99998775 567989999776666664 4467889999999999987652 22 47777877776543
Q ss_pred ecccC-------CceeEEEeecCCCceecc
Q 004298 99 LKSHT-------VAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 99 l~~h~-------~~V~~l~ws~~~~~l~s~ 121 (763)
+..+. .......|+|+|+.++..
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred eeecCCCccCccccccccccCCCCCEEEEE
Confidence 32221 245678899999877653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.48 E-value=0.0014 Score=67.96 Aligned_cols=204 Identities=7% Similarity=-0.076 Sum_probs=103.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcc--CceEEE--ecCCCcEEEEEEccCCCEEEEEE---cCCcEEEEEccC-Ce
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFN--WQRLWT--ISPGKSVTSLCWRPDGKAIAVGL---EDGTITLHDVEN-GK 94 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~--~~~v~~--~~~~~~V~~l~wspDG~~Lasg~---~Dg~V~lwdve~-g~ 94 (763)
.+..++++|+++.|.+++. +.+..|.++ ++.... ...+.....+.++|||+.+.+.. ..+.|..+.+.. +.
T Consensus 41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~ 119 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence 3677999999999887654 567788773 332222 12344566788899998543322 456666555421 21
Q ss_pred EEEEe----------------cccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccC
Q 004298 95 LLRSL----------------KSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDD 158 (763)
Q Consensus 95 ~~~~l----------------~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~ 158 (763)
....+ +.....+.++.|+|+|+++.++. .....+.+|+.... ..+... ......
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d-----~g~d~v~~~~~~~~-g~~~~~-~~~~~~--- 189 (365)
T d1jofa_ 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD-----LTANKLWTHRKLAS-GEVELV-GSVDAP--- 189 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEECTT-SCEEEE-EEEECS---
T ss_pred cceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee-----CCCCEEEEEEccCC-Cceeec-cceeec---
Confidence 11111 11223578999999999877654 13445666543321 000000 000000
Q ss_pred CcccccceecccCCCeeEE-EEEcCCCcEEEEEcCcee------eeeeeecccccccccCCCCCceeeeccceeeEEecC
Q 004298 159 SEDSFRELANSSHQRFSIL-CSGDKDGSICFNIFGIFP------IGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSK 231 (763)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L-~sgs~DG~I~lw~~~~~~------ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~Sp 231 (763)
..........++++++++ +++..+++|.+|+++... .+..++...... ......... ......+.+||
T Consensus 190 -~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~i~~sp 264 (365)
T d1jofa_ 190 -DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP-DRDPETGKG---LYRADVCALTF 264 (365)
T ss_dssp -STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC-CBCTTTSSB---SEEEEEEEECT
T ss_pred -CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccc-ccccccccc---cCCccceEECC
Confidence 000111223345666655 556678899999865432 222221110000 000000000 01244678999
Q ss_pred CCCEEEEEeec
Q 004298 232 DLFHLTVLCSG 242 (763)
Q Consensus 232 Dg~~Llv~~~d 242 (763)
||++|+++..+
T Consensus 265 dG~~lyvsnr~ 275 (365)
T d1jofa_ 265 SGKYMFASSRA 275 (365)
T ss_dssp TSSEEEEEEEE
T ss_pred CCCEEEEEccc
Confidence 99999988653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.45 E-value=0.0013 Score=68.21 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCeEEEEEc--cCceE-----EEecCCCcEEEEEEccCCCEEEEEE-cCCcEEEEEccCC
Q 004298 23 QIKIAEWNPEKDLLAMATE-DSKILLHRF--NWQRL-----WTISPGKSVTSLCWRPDGKAIAVGL-EDGTITLHDVENG 93 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~-Dg~V~v~~l--~~~~v-----~~~~~~~~V~~l~wspDG~~Lasg~-~Dg~V~lwdve~g 93 (763)
.++++.|+|+|++++++.. ...|.+|+. ++... ....++.....++|+|||+++.+.. .+++|.+|++..+
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 4789999999998877654 467888887 33322 1123567899999999999886666 6889999998765
Q ss_pred eE--EEE---ec--------------ccCCceeEEEeecCCCceecc
Q 004298 94 KL--LRS---LK--------------SHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 94 ~~--~~~---l~--------------~h~~~V~~l~ws~~~~~l~s~ 121 (763)
+. +.. +. .+......+.++|+|+++.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 32 211 11 111235678999999988765
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.23 E-value=0.0002 Score=74.24 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCEEEEEeCC---------CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCE--EEEEEcCCcEEEEEcc
Q 004298 24 IKIAEWNPEKDLLAMATED---------SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKA--IAVGLEDGTITLHDVE 91 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~D---------g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~--Lasg~~Dg~V~lwdve 91 (763)
...++++|++..+.+...+ ..|.+|+. +++.+..+..+..+.+++|+|||+. ++++..|+.|++||..
T Consensus 266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 3458899999877665322 35889998 6777777777788999999999983 4566689999999999
Q ss_pred CCeEEEEeccc
Q 004298 92 NGKLLRSLKSH 102 (763)
Q Consensus 92 ~g~~~~~l~~h 102 (763)
+|+.+++++..
T Consensus 346 tgk~~~~i~~g 356 (368)
T d1mdah_ 346 SDQDQSSVELD 356 (368)
T ss_dssp SCEEEEECCCC
T ss_pred CCCEEEEEECC
Confidence 99999998753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0014 Score=70.63 Aligned_cols=108 Identities=11% Similarity=0.210 Sum_probs=75.3
Q ss_pred CeEEEEEcCCCCEEEEEeC---------CCeEEEEEccCceEEEecC----CCcEEEEEEccCCCEEEEEEcCCcEEEEE
Q 004298 23 QIKIAEWNPEKDLLAMATE---------DSKILLHRFNWQRLWTISP----GKSVTSLCWRPDGKAIAVGLEDGTITLHD 89 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~---------Dg~V~v~~l~~~~v~~~~~----~~~V~~l~wspDG~~Lasg~~Dg~V~lwd 89 (763)
.+....||||++.++...+ .+.+.+|++..+....+.+ ...+....|||||+.||... ++.+.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 3677899999999887753 4678899996666666642 23456689999999999876 66788888
Q ss_pred ccCCeEEEEec-ccCCc-----------------eeEEEeecCCCceeccCCCCCcccCCceeec
Q 004298 90 VENGKLLRSLK-SHTVA-----------------VVCLNWEEDAQPSKNDFGNIPTYEDRTSRFF 136 (763)
Q Consensus 90 ve~g~~~~~l~-~h~~~-----------------V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~w 136 (763)
..++..++... +.... -..+.|+|||+.++... .++..+..+
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~-----~D~s~V~~~ 200 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA-----INDSRVPIM 200 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE-----EECTTSCEE
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE-----eccccccee
Confidence 87766554432 11111 24788999999998764 244555444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.22 E-value=0.00025 Score=75.43 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCeEEEEEcc-Cce--EEEecCCCcEEEEEEccCCC--EEEEEEcCC--------------
Q 004298 24 IKIAEWNPEKDLLAMAT-EDSKILLHRFN-WQR--LWTISPGKSVTSLCWRPDGK--AIAVGLEDG-------------- 83 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s-~Dg~V~v~~l~-~~~--v~~~~~~~~V~~l~wspDG~--~Lasg~~Dg-------------- 83 (763)
......+|||+++.+.. .+++|.++|+. ++. +..+.++..+..++|+|||+ +++.++.+.
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~ 153 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN 153 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence 44455679998886654 67889999994 433 33456788999999999999 455444432
Q ss_pred ---cEEEEEccCCeEEEEecccCCceeEEEeecCCCceeccC
Q 004298 84 ---TITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 84 ---~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
.+..+|.++.+...++.. ......+.|+|+|+++.+.+
T Consensus 154 ~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~ 194 (441)
T d1qnia2 154 SYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTC 194 (441)
T ss_dssp EEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEE
T ss_pred ccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEe
Confidence 235688888888888765 35678999999999877654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.20 E-value=0.01 Score=59.98 Aligned_cols=199 Identities=8% Similarity=0.013 Sum_probs=108.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC----CeEEEEEccCceEEEec----CCCcEEEEEEccCCCEEEEEEc------CCcEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATED----SKILLHRFNWQRLWTIS----PGKSVTSLCWRPDGKAIAVGLE------DGTITL 87 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~D----g~V~v~~l~~~~v~~~~----~~~~V~~l~wspDG~~Lasg~~------Dg~V~l 87 (763)
.....++++|+|+++++...+ +.|...+..+..+.... .....+.+++.|+|++.++... .+.+..
T Consensus 82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~ 161 (319)
T d2dg1a1 82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 161 (319)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEE
Confidence 346789999999988775433 23434444444433332 2345788999999987665432 223544
Q ss_pred EEccCCeEEEEecccCCceeEEEeecCCCce-eccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccce
Q 004298 88 HDVENGKLLRSLKSHTVAVVCLNWEEDAQPS-KNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFREL 166 (763)
Q Consensus 88 wdve~g~~~~~l~~h~~~V~~l~ws~~~~~l-~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~ 166 (763)
++.. ++.+..+...-...+.|+|+|+++.+ ++.+ ..+.+..|+.......... ...............+
T Consensus 162 ~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~------~~~~I~~~d~~~~g~~~~~-~~~~~~~~~~~~~~Pd-- 231 (319)
T d2dg1a1 162 VSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTET------TANRLHRIALEDDGVTIQP-FGATIPYYFTGHEGPD-- 231 (319)
T ss_dssp ECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEG------GGTEEEEEEECTTSSSEEE-EEEEEEEECCSSSEEE--
T ss_pred Eecc-cceeEEEeeccceeeeeeeccccceEEEecc------cCCceEEEEEcCCCceecc-ccceeeeccCCcccee--
Confidence 5544 43333332223456789999999754 3333 4667777765432110000 0000000000000011
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEeec
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCSG 242 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~d 242 (763)
..+.+.++++.++...+|.|..++-....+..+.+...... . ...+.+++|.+++..+++.+.+
T Consensus 232 Gl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~---~---------~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 232 SCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEG---H---------MLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGT---C---------SCBCCEEEECTTSCEEEEEEEC
T ss_pred eeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCC---c---------CceeeeEEEeCCCCEEEEEcCC
Confidence 12345677888888888999988766666666654321100 0 0125678999988888777654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.05 E-value=0.0092 Score=58.87 Aligned_cols=155 Identities=7% Similarity=0.047 Sum_probs=104.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEE
Q 004298 22 SQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRS 98 (763)
Q Consensus 22 ~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~ 98 (763)
.....++..++++++++....+.+.+++.+++.+..+. +......+++.++|..+++....+.|++||. +|+.+.+
T Consensus 114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~ 192 (279)
T d1q7fa_ 114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQ 192 (279)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEE
T ss_pred cccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeee
Confidence 34678899999998888887888999999998877763 3456788999999999998899999999995 5788777
Q ss_pred ec--ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeE
Q 004298 99 LK--SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSI 176 (763)
Q Consensus 99 l~--~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (763)
+. ++......|++.++|..+++.. +.++.+.+|+..... .......... ......+..+++.+
T Consensus 193 ~g~~g~~~~P~giavD~~G~i~Vad~-----~~~~~v~~f~~~G~~---~~~~~~~~~~-------~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 193 IGGEGITNYPIGVGINSNGEILIADN-----HNNFNLTIFTQDGQL---ISALESKVKH-------AQCFDVALMDDGSV 257 (279)
T ss_dssp ESCTTTSCSEEEEEECTTCCEEEEEC-----SSSCEEEEECTTSCE---EEEEEESSCC-------SCEEEEEEETTTEE
T ss_pred ecccccccCCcccccccCCeEEEEEC-----CCCcEEEEECCCCCE---EEEEeCCCCC-------CCEeEEEEeCCCcE
Confidence 73 2345678999999998776643 134567788754321 0000000000 00111223456665
Q ss_pred EEEEcCCCcEEEEEcCc
Q 004298 177 LCSGDKDGSICFNIFGI 193 (763)
Q Consensus 177 L~sgs~DG~I~lw~~~~ 193 (763)
++ ++.+.+|++|.+..
T Consensus 258 ~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 258 VL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp EE-EETTTEEEEEECSC
T ss_pred EE-EeCCCeEEEEEeee
Confidence 54 45688899887543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.0056 Score=59.84 Aligned_cols=150 Identities=5% Similarity=-0.073 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEeccc
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSH 102 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h 102 (763)
...++++|+++++++....+.+.+++. ++..++.........++++.++|++.++-..+..+..++.............
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG 138 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecc
Confidence 466889999998776665555655544 3334433334467899999999998887777777877776543322221122
Q ss_pred CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCCeeEEEEEcC
Q 004298 103 TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDK 182 (763)
Q Consensus 103 ~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~ 182 (763)
......+++.+++..+++.. .++.+..++.......... ...+. .....+.+++++++++...
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~------~~~~i~~~d~~~~~~~~~~----~~~~~-------~p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDT------DNNRVVKLEAESNNQVVLP----FTDIT-------APWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEG------GGTEEEEECTTTCCEEECC----CSSCC-------SEEEEEECTTCCEEEEETT
T ss_pred cCCcceeeecCCCCEeeecc------ccccccccccccceeeeee----ccccC-------CCccceeeeeeeeeeeecC
Confidence 34567899999988766654 5667777776542111000 00000 0011223456667777766
Q ss_pred CCcEEEEE
Q 004298 183 DGSICFNI 190 (763)
Q Consensus 183 DG~I~lw~ 190 (763)
.+.|..+.
T Consensus 202 ~~~i~~~~ 209 (260)
T d1rwia_ 202 TNQVVKLL 209 (260)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEe
Confidence 77766654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.94 E-value=0.038 Score=54.84 Aligned_cols=190 Identities=14% Similarity=0.062 Sum_probs=110.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec------CCCcEEEEEEccCCCEEEEEEc----CCcEEEEE
Q 004298 20 VASQIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS------PGKSVTSLCWRPDGKAIAVGLE----DGTITLHD 89 (763)
Q Consensus 20 ~~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~------~~~~V~~l~wspDG~~Lasg~~----Dg~V~lwd 89 (763)
+|..+.++++.+++.+++. +.+ .|.+++....++..+. ....++.+.+.|+|++.++... .+.-.+|.
T Consensus 57 ~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 57 LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence 3455889999999887764 444 5888888544443332 2336889999999997666543 23556777
Q ss_pred ccCCeEEEEecccCCceeEEEeecCCCcee-ccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc--CCcccccce
Q 004298 90 VENGKLLRSLKSHTVAVVCLNWEEDAQPSK-NDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD--DSEDSFREL 166 (763)
Q Consensus 90 ve~g~~~~~l~~h~~~V~~l~ws~~~~~l~-s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~--~~~~~~~~~ 166 (763)
+.+|+....... -..-..+.|++++..+. +.+ ..+.+..++.......... ....+.. ......+.+
T Consensus 135 ~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt------~~~~I~~~~~d~~~~~~~~---~~~~~~~~~~~~g~pdG~ 204 (295)
T d2ghsa1 135 VAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDT------KVNRLMRVPLDARTGLPTG---KAEVFIDSTGIKGGMDGS 204 (295)
T ss_dssp EETTEEEEEEEE-ESSEEEEEECTTSCEEEEEET------TTCEEEEEEBCTTTCCBSS---CCEEEEECTTSSSEEEEE
T ss_pred ecCCcEEEEeec-cCCcceeeecCCCceEEEeec------ccceeeEeeeccccccccc---ceEEEeccCcccccccce
Confidence 777876555433 24567899999987543 333 3555655554321111100 0000110 000111112
Q ss_pred ecccCCCeeEEEEEcCCCcEEEEEcCceeeeeeeecccccccccCCCCCceeeeccceeeEEec-CCCCEEEEEee
Q 004298 167 ANSSHQRFSILCSGDKDGSICFNIFGIFPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALS-KDLFHLTVLCS 241 (763)
Q Consensus 167 ~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~S-pDg~~Llv~~~ 241 (763)
+.+.++++.++.-..|.|..|+-+...+..+.+.. ..+++++|- +|++.|++.+.
T Consensus 205 --~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~------------------~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 205 --VCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPG------------------KQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp --EECTTSCEEEEEETTTEEEEECTTCCEEEEEECSC------------------SBEEEEEEESTTSCEEEEEEB
T ss_pred --EEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCC------------------CceEEEEEeCCCCCEEEEEEC
Confidence 23456666666666777777765554555554321 136788995 79999998754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.85 E-value=0.049 Score=53.34 Aligned_cols=156 Identities=7% Similarity=0.008 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEecCC-------CcEEEEEEccCCC-EEEEE-EcCCcEEEEEccCCe
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTISPG-------KSVTSLCWRPDGK-AIAVG-LEDGTITLHDVENGK 94 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~~~-------~~V~~l~wspDG~-~Lasg-~~Dg~V~lwdve~g~ 94 (763)
...++++|+++++++-...+.|++|+.+|+.++.+... .....+++.++.. .+++. +.++.|..++. +|+
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~ 103 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 103 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-ccc
Confidence 57899999999888877788999999999888877421 1346677766544 44433 35567777774 577
Q ss_pred EEEEecc-cCCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccceecccCCC
Q 004298 95 LLRSLKS-HTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRELANSSHQR 173 (763)
Q Consensus 95 ~~~~l~~-h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (763)
....+.. .......++..+++...++.. ....+.+++...... ........+. ........++
T Consensus 104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~------~~~~~~~~~~~g~~~---~~~g~~~~~~-------~~~~i~~d~~ 167 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDNKGRIIVVEC------KVMRVIIFDQNGNVL---HKFGCSKHLE-------FPNGVVVNDK 167 (279)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEE---EEEECTTTCS-------SEEEEEECSS
T ss_pred ceeecCCCcccccceeccccCCcEEEEee------ccceeeEeccCCcee---eccccccccc-------ccceeeeccc
Confidence 7777643 345678888888888766654 345555565443210 0000000000 0011234466
Q ss_pred eeEEEEEcCCCcEEEEEcCceee
Q 004298 174 FSILCSGDKDGSICFNIFGIFPI 196 (763)
Q Consensus 174 ~~~L~sgs~DG~I~lw~~~~~~i 196 (763)
++++++....+.|++|+.....+
T Consensus 168 g~i~v~d~~~~~V~~~d~~G~~~ 190 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNYEGQYL 190 (279)
T ss_dssp SEEEEEEGGGTEEEEEETTCCEE
T ss_pred eeEEeeeccccceeeeecCCcee
Confidence 78888888888998887554333
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.61 E-value=0.062 Score=53.76 Aligned_cols=185 Identities=8% Similarity=-0.037 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec---CCC---cEEEEEEccCCCEEEEEEc---------------C
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS---PGK---SVTSLCWRPDGKAIAVGLE---------------D 82 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~---~~~---~V~~l~wspDG~~Lasg~~---------------D 82 (763)
-..++|.|+++++.++...+.|...+.++.....+. .+. ..+.+++.|+|.+.++-.. +
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence 457999999998888887777888888776544332 122 3578999999988776432 2
Q ss_pred CcEEEEEccCCeEEEEecccCCceeEEEeecCCC-----ceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCccccc
Q 004298 83 GTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQ-----PSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTD 157 (763)
Q Consensus 83 g~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~-----~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~ 157 (763)
|.|..++. +|+...... .-..-+.++|++++. +.++.+ ..+.+..|+..... .+ .....+..
T Consensus 153 G~v~~~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~------~~~~i~~~d~~~~g-~~----~~~~~~~~ 219 (314)
T d1pjxa_ 153 GSIYCFTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGPA-KI----ENKKVWGH 219 (314)
T ss_dssp EEEEEECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEETT-EE----EEEEEEEE
T ss_pred ceEEEEee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEee------cccceEEeeccCcc-cc----ceeeEEEE
Confidence 34444443 355443332 223456889998763 333333 45556555543210 00 00000000
Q ss_pred --C-CcccccceecccCCCeeEEEEEcCCCcEEEEEcCc-eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCC
Q 004298 158 --D-SEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI-FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDL 233 (763)
Q Consensus 158 --~-~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg 233 (763)
. .....+- .+.+.++++.++....|.|..++-+. .....+.. -.....+++|.||+
T Consensus 220 ~~~~~~~~pdG--iavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~------------------p~~~~t~~afg~d~ 279 (314)
T d1pjxa_ 220 IPGTHEGGADG--MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC------------------PFEKPSNLHFKPQT 279 (314)
T ss_dssp CCCCSSCEEEE--EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC------------------SSSCEEEEEECTTS
T ss_pred cccccccccee--eEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC------------------CCCCEEEEEEeCCC
Confidence 0 0000011 12345667777766677777775331 11222211 11235679999999
Q ss_pred CEEEEEee
Q 004298 234 FHLTVLCS 241 (763)
Q Consensus 234 ~~Llv~~~ 241 (763)
+.|++...
T Consensus 280 ~~lyVt~~ 287 (314)
T d1pjxa_ 280 KTIFVTEH 287 (314)
T ss_dssp SEEEEEET
T ss_pred CEEEEEEC
Confidence 99988754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.38 E-value=0.033 Score=55.32 Aligned_cols=191 Identities=13% Similarity=0.016 Sum_probs=111.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcc---Cc--eEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeE
Q 004298 21 ASQIKIAEWNPEKDLLAMATEDSKILLHRFN---WQ--RLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKL 95 (763)
Q Consensus 21 ~~~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~---~~--~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~ 95 (763)
+..+..++|+|+|+++++...++.+.+++.. +. .+.........+.+++.++|+++++.+.++.+..++..++..
T Consensus 67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~ 146 (302)
T d2p4oa1 67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146 (302)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence 3568999999999999998888888777762 22 223334567789999999999999888999999999887654
Q ss_pred EEEecc--------c--CCceeEEEeecCCCceeccCCCCCcccCCceeecCCCCCCCCCCCcccCCcccccCCcccccc
Q 004298 96 LRSLKS--------H--TVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPAPRIPQMPGLVSGDTGFTDDSEDSFRE 165 (763)
Q Consensus 96 ~~~l~~--------h--~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~~~~s~~~~~~~~~~~~~~~ 165 (763)
...... + ......+.+..+. ...+.. ..+.+..++.......... ..+.. ....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~-l~~~~~------~~~~i~~~~~~~~~~~~~~-----~~~~~--~~~pdg 212 (302)
T d2p4oa1 147 SIWLEHPMLARSNSESVFPAANGLKRFGNF-LYVSNT------EKMLLLRIPVDSTDKPGEP-----EIFVE--QTNIDD 212 (302)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEEEEETTE-EEEEET------TTTEEEEEEBCTTSCBCCC-----EEEEE--SCCCSS
T ss_pred eeEecCCccceeeccCcccccccccccCCc-eeeecC------CCCeEEecccccccccccc-----ccccC--CCCCcc
Confidence 332211 1 1234556665433 223322 3555655554432111000 00000 000111
Q ss_pred eecccCCCeeEEEEEcCCCcEEEEEcCceeeeeee-ecccccccccCCCCCceeeeccceeeEEe---cCCCCEEEEEee
Q 004298 166 LANSSHQRFSILCSGDKDGSICFNIFGIFPIGKIN-IHKFHVAIPNADEQGTCRLLNASIYKVAL---SKDLFHLTVLCS 241 (763)
Q Consensus 166 ~~~~~~~~~~~L~sgs~DG~I~lw~~~~~~ig~~~-i~~~~~~~~s~~~~~~~~l~~~~I~~v~~---SpDg~~Llv~~~ 241 (763)
...+.++++.++...+++|..+..+. .+. +..... +. .....++| ++|++.|++.+.
T Consensus 213 --ia~d~dG~l~va~~~~~~V~~i~p~G----~~~~~~~~~~-----~~--------~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 213 --FAFDVEGNLYGATHIYNSVVRIAPDR----STTIIAQAEQ-----GV--------IGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp --EEEBTTCCEEEECBTTCCEEEECTTC----CEEEEECGGG-----TC--------TTEEEEEECCSTTTTTEEEEEEC
T ss_pred --eEECCCCCEEEEEcCCCcEEEECCCC----CEEEEEecCC-----CC--------CCceEEEEcCCCCCCCEEEEECC
Confidence 23446677777777788877765332 111 000000 00 12467899 789999999877
Q ss_pred cCc
Q 004298 242 GQL 244 (763)
Q Consensus 242 d~l 244 (763)
+++
T Consensus 274 ~g~ 276 (302)
T d2p4oa1 274 GGM 276 (302)
T ss_dssp TTS
T ss_pred CCc
Confidence 653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.37 E-value=0.029 Score=54.45 Aligned_cols=111 Identities=4% Similarity=-0.027 Sum_probs=79.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEec
Q 004298 23 QIKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLK 100 (763)
Q Consensus 23 ~V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~ 100 (763)
....+++.++++++++-...+.+..+...+...+... .-....++++.|+|+.+++...++.|..++.+.........
T Consensus 99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~ 178 (260)
T d1rwia_ 99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF 178 (260)
T ss_dssp SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC
T ss_pred ecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeec
Confidence 4678999999998887766777777777665555443 22456789999999988888889999999977544333222
Q ss_pred ccCCceeEEEeecCCCceeccCCCCCcccCCceeecCCC
Q 004298 101 SHTVAVVCLNWEEDAQPSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 101 ~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
..-.....+++.++|.+.++.. ..+.+..++..
T Consensus 179 ~~~~~p~gi~~d~~g~l~vsd~------~~~~i~~~~~~ 211 (260)
T d1rwia_ 179 TDITAPWGIAVDEAGTVYVTEH------NTNQVVKLLAG 211 (260)
T ss_dssp SSCCSEEEEEECTTCCEEEEET------TTTEEEEECTT
T ss_pred cccCCCccceeeeeeeeeeeec------CCCEEEEEeCC
Confidence 3345678899999998777765 45666655543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0054 Score=65.74 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcc-Cce--EEEec--CCCcEEEEEEccCCCEEEEEEc---------CCcEEEEEccC
Q 004298 27 AEWNPEKDLLAMATEDSKILLHRFN-WQR--LWTIS--PGKSVTSLCWRPDGKAIAVGLE---------DGTITLHDVEN 92 (763)
Q Consensus 27 l~~sP~~~lLA~~s~Dg~V~v~~l~-~~~--v~~~~--~~~~V~~l~wspDG~~Lasg~~---------Dg~V~lwdve~ 92 (763)
..|.+++.++. -..+|.|.+|+.. ++. +.... ....+....|||||++++.+.. .+.+.++|+.+
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 57999987664 4567889999993 332 22222 2235677889999999988753 56789999998
Q ss_pred CeEEEEe--cccCCceeEEEeecCCCceeccC
Q 004298 93 GKLLRSL--KSHTVAVVCLNWEEDAQPSKNDF 122 (763)
Q Consensus 93 g~~~~~l--~~h~~~V~~l~ws~~~~~l~s~s 122 (763)
++...-. ......+....|+|||+.++...
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~ 132 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF 132 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe
Confidence 8754322 22234566789999999887763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.12 E-value=0.12 Score=51.56 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccCceEEE--ecCCCcEEEEEEccCCCEEEEEEcC----CcEEEEEccCCeEEE
Q 004298 24 IKIAEWNPEKDLLAMATEDSKILLHRFNWQRLWT--ISPGKSVTSLCWRPDGKAIAVGLED----GTITLHDVENGKLLR 97 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~Dg~V~v~~l~~~~v~~--~~~~~~V~~l~wspDG~~Lasg~~D----g~V~lwdve~g~~~~ 97 (763)
+..++|.++|++.++-...+.|..|+..++.+.. ........+++++|||+++++...+ +.+...+...+....
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~ 121 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 121 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence 5789999999988887788888888876654433 3355678999999999988776543 334445545444443
Q ss_pred Eeccc--CCceeEEEeecCCCceecc
Q 004298 98 SLKSH--TVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 98 ~l~~h--~~~V~~l~ws~~~~~l~s~ 121 (763)
..... ......+.+.++|++.++.
T Consensus 122 ~~~~~~~~~~~nd~~~d~~G~l~vtd 147 (319)
T d2dg1a1 122 IIEDLSTAYCIDDMVFDSKGGFYFTD 147 (319)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred eccCCCcccCCcceeEEeccceeecc
Confidence 33221 2356788999999876654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=95.74 E-value=0.049 Score=54.54 Aligned_cols=109 Identities=11% Similarity=0.152 Sum_probs=76.9
Q ss_pred EEEEEcCCCC-----EEEEEeCCCeEEEEEcc--Cc----eEEEecC---CCcEEEEEEccCCCEEEEEEcCCcEEEEEc
Q 004298 25 KIAEWNPEKD-----LLAMATEDSKILLHRFN--WQ----RLWTISP---GKSVTSLCWRPDGKAIAVGLEDGTITLHDV 90 (763)
Q Consensus 25 ~~l~~sP~~~-----lLA~~s~Dg~V~v~~l~--~~----~v~~~~~---~~~V~~l~wspDG~~Lasg~~Dg~V~lwdv 90 (763)
..++|+|+++ +.++-+..+.|+.|+++ +. +++.... ......+++.++|++.++....+.|.+||.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 4678988775 55555677888888873 22 2222111 123568999999998888889999999999
Q ss_pred cCCeEEEEecccCCceeEEEeecCCC-ceeccCCCCCcccCCceeecCCC
Q 004298 91 ENGKLLRSLKSHTVAVVCLNWEEDAQ-PSKNDFGNIPTYEDRTSRFFPPA 139 (763)
Q Consensus 91 e~g~~~~~l~~h~~~V~~l~ws~~~~-~l~s~s~~~~~~~d~~i~~wd~~ 139 (763)
+.++.+..+.......++++|.++++ ..++.+ ..+++..++..
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~------~~g~i~~~~~~ 298 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH------ENNAVWKFEWQ 298 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEET------TTTEEEEEECS
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC------CCCcEEEEECC
Confidence 88887777766567889999999886 445554 45666665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.33 E-value=0.23 Score=51.02 Aligned_cols=203 Identities=12% Similarity=-0.006 Sum_probs=117.2
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEeCCC------------------eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEE
Q 004298 19 PVASQIKIAEWNP--EKDLLAMATEDS------------------KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIA 77 (763)
Q Consensus 19 ~~~~~V~~l~~sP--~~~lLA~~s~Dg------------------~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~La 77 (763)
|.+..+..++..+ +..+++.++.+. .+.+.+. +.+..|.+.-+.....+.++|||++++
T Consensus 129 Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af 208 (459)
T d1fwxa2 129 PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAF 208 (459)
T ss_dssp SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEE
T ss_pred CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEE
Confidence 4445677777654 456777766532 2456666 566678777555677899999999999
Q ss_pred EEEcC--------------------------------------CcEEEEEccC---CeEEEEecccCCceeEEEeecCCC
Q 004298 78 VGLED--------------------------------------GTITLHDVEN---GKLLRSLKSHTVAVVCLNWEEDAQ 116 (763)
Q Consensus 78 sg~~D--------------------------------------g~V~lwdve~---g~~~~~l~~h~~~V~~l~ws~~~~ 116 (763)
+.+.+ +.|.+.|.++ ...++.+.. ......+..+|||+
T Consensus 209 ~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGK 287 (459)
T d1fwxa2 209 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKK 287 (459)
T ss_dssp EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSS
T ss_pred EEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCC
Confidence 88743 2234444332 122223322 23456789999999
Q ss_pred ceeccCCCCCcccCCceeecCCCCCCCCCC-CcccCCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc--
Q 004298 117 PSKNDFGNIPTYEDRTSRFFPPAPRIPQMP-GLVSGDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI-- 193 (763)
Q Consensus 117 ~l~s~s~~~~~~~d~~i~~wd~~~~~~~l~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~-- 193 (763)
+++.++. .+.++.++|...- ..+. .............+-.+..+...++.+++...+-.-|..|.-|.++.
T Consensus 288 yi~VaGK-----Ls~tVSViD~~Ki-~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~ 361 (459)
T d1fwxa2 288 HLCVAGK-----LSPTVTVLDVTRF-DAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI 361 (459)
T ss_dssp EEEEECT-----TSSBEEEEEGGGH-HHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHH
T ss_pred EEEEeCC-----cCCcEEEEEehhh-hhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhh
Confidence 8877652 5778888776530 0000 00000011111112223345555678888888888999999997642
Q ss_pred ---------eeeeeeeecccccccccCCCCCceeeeccceeeEEecCCCCEEEEEee
Q 004298 194 ---------FPIGKINIHKFHVAIPNADEQGTCRLLNASIYKVALSKDLFHLTVLCS 241 (763)
Q Consensus 194 ---------~~ig~~~i~~~~~~~~s~~~~~~~~l~~~~I~~v~~SpDg~~Llv~~~ 241 (763)
..+.+++++-.++|..+...+ ...|||++|++++.
T Consensus 362 ~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~-------------t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 362 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGE-------------TLDATNDWLVCLSK 405 (459)
T ss_dssp HHHHTCSCCCEEEEEECSSCEEEEEETTTT-------------STTCCSSEEEEEES
T ss_pred hhhccccCCcceeccccccCCCCCccCcCC-------------cCCCCCCEEEEecc
Confidence 224455555444443322211 24789999998874
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.78 E-value=0.32 Score=46.14 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=41.9
Q ss_pred EEccC--CCEEEEEEcCCcEEEEEccCCeEEEEecccCCceeEEEeecCCCceecc
Q 004298 68 CWRPD--GKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAVVCLNWEEDAQPSKND 121 (763)
Q Consensus 68 ~wspD--G~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V~~l~ws~~~~~l~s~ 121 (763)
..+|| |+.+|..+ +|.|.++|+.+|+. +.+..+...+....|+|||+.++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~ 58 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIR 58 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEE
Confidence 46899 99998775 56788889987775 4676777889999999999988754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.89 E-value=0.86 Score=44.41 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEEccCc--------eEEEec--CCCcEEEEEEccCCCEEEEEEcCCcEEEEEccC
Q 004298 24 IKIAEWNPEKDLL-AMATEDSKILLHRFNWQ--------RLWTIS--PGKSVTSLCWRPDGKAIAVGLEDGTITLHDVEN 92 (763)
Q Consensus 24 V~~l~~sP~~~lL-A~~s~Dg~V~v~~l~~~--------~v~~~~--~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~ 92 (763)
-..++|+|+++.+ .+-+..+.|+.|+++.. .++.-. .......+++..+|++.++....|.|..||. +
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~ 228 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D 228 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-C
Confidence 3578999999855 45566788998887422 122211 2345788999999998888889999999994 6
Q ss_pred CeEEEEecccCCceeEEEee-cCCC
Q 004298 93 GKLLRSLKSHTVAVVCLNWE-EDAQ 116 (763)
Q Consensus 93 g~~~~~l~~h~~~V~~l~ws-~~~~ 116 (763)
|+.+..+..-...+++++|. ++.+
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSC
T ss_pred CcEeeEecCCCCceEEEEEeCCCCC
Confidence 99998887645679999996 5554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=87.82 E-value=14 Score=36.40 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=67.1
Q ss_pred cEEEEEE--cc-CCC-EEEEEEcCCcEEEEEcc---CC----eEEEEecccCCceeEEEeecCCCceeccCCCCCcccCC
Q 004298 63 SVTSLCW--RP-DGK-AIAVGLEDGTITLHDVE---NG----KLLRSLKSHTVAVVCLNWEEDAQPSKNDFGNIPTYEDR 131 (763)
Q Consensus 63 ~V~~l~w--sp-DG~-~Lasg~~Dg~V~lwdve---~g----~~~~~l~~h~~~V~~l~ws~~~~~l~s~s~~~~~~~d~ 131 (763)
.+..+|+ +| +|. ++++...+|.+..|.+. ++ +.++++.. ...+..|.+......+..+- ++.
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisE------E~~ 201 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAE------EDE 201 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEE------TTT
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEec------Ccc
Confidence 3566666 66 454 45666678888877663 33 33445543 45778888887766555553 444
Q ss_pred ceeecCCCCCCCCCCCccc--CCcccccCCcccccceecccCCCeeEEEEEcCCCcEEEEEcCc--eeeeeeeecc
Q 004298 132 TSRFFPPAPRIPQMPGLVS--GDTGFTDDSEDSFRELANSSHQRFSILCSGDKDGSICFNIFGI--FPIGKINIHK 203 (763)
Q Consensus 132 ~i~~wd~~~~~~~l~~~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~L~sgs~DG~I~lw~~~~--~~ig~~~i~~ 203 (763)
.+..++..+.......... ....+.. .-..+ .+......++-++++.-.+++..+|+... -.+|++.+..
T Consensus 202 Giw~~~a~~~~~~~~~~i~~~~g~~l~~-D~EGl-aiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i~~ 275 (353)
T d1h6la_ 202 AIWKFSAEPDGGSNGTVIDRADGRHLTP-DIEGL-TIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQITD 275 (353)
T ss_dssp EEEEEESSTTSCSCCEEEEECSSSSCCS-CEEEE-EEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred ceEEEEeccCCCccceeeecccCccccC-Ccccc-EEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEEec
Confidence 3433343332111111000 0001110 00111 11122234555667666788999997654 3677777644
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=82.32 E-value=1.1 Score=48.10 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=50.2
Q ss_pred eEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCce-eEEEeecCCC
Q 004298 44 KILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVAV-VCLNWEEDAQ 116 (763)
Q Consensus 44 ~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~V-~~l~ws~~~~ 116 (763)
.+.-+++ +|+.+|....+....+=..+-.|.++++|..||.++.+|.++|+.+.+++...... .-|.|..+|+
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 5667777 78888888744332222223467788889999999999999999998886432111 1256667785
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.84 E-value=1.1 Score=48.33 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=53.9
Q ss_pred CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcCCcEEEEEccCCeEEEEecccCCc-eeEEEeecCCC-cee
Q 004298 43 SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLEDGTITLHDVENGKLLRSLKSHTVA-VVCLNWEEDAQ-PSK 119 (763)
Q Consensus 43 g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~Dg~V~lwdve~g~~~~~l~~h~~~-V~~l~ws~~~~-~l~ 119 (763)
|.|.-+++ +|+.+|....+.++.+-..+..|.++++|+.||.++-+|.+||+.+.+++..... -.-|.|..+|+ +++
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 46777777 7888898875444433233457778888999999999999999999988753221 12267778885 443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.09 E-value=3.3 Score=42.25 Aligned_cols=96 Identities=9% Similarity=0.112 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCEEEEEeC-C----CeEEEEEc-cCceEEEecCCCcEEEEEEccCCCEEEEEEcC---------------
Q 004298 24 IKIAEWNPEKDLLAMATE-D----SKILLHRF-NWQRLWTISPGKSVTSLCWRPDGKAIAVGLED--------------- 82 (763)
Q Consensus 24 V~~l~~sP~~~lLA~~s~-D----g~V~v~~l-~~~~v~~~~~~~~V~~l~wspDG~~Lasg~~D--------------- 82 (763)
+..+++||+++++|.+-. + ..|+++++ +++.+-..-.+.....++|.+|++.|.-...|
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~ 206 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence 456788999999996432 2 36889998 55444322222223568999999988755432
Q ss_pred -CcEEEEEccCCe--EEEEecccC--CceeEEEeecCCCcee
Q 004298 83 -GTITLHDVENGK--LLRSLKSHT--VAVVCLNWEEDAQPSK 119 (763)
Q Consensus 83 -g~V~lwdve~g~--~~~~l~~h~--~~V~~l~ws~~~~~l~ 119 (763)
..|..|.+.++. ....+.... ..+..+..+++++++.
T Consensus 207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~ 248 (430)
T d1qfma1 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL 248 (430)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred cceEEEEECCCCccccccccccccCCceEEeeeccCCcceee
Confidence 257777776542 222333222 3455667788888754
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