Citrus Sinensis ID: 004300

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760--
MISRIMFADDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWRHYDDNSAASFNR
ccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHcHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEEccccHHHHHccEEEEEEccHHHHHHccccccccccccccccccccccccccccccccccccccc
cccEccccccccHHHHHHHHHccHccHHHcccccccccccccHHHHHHHHHccccHHHHcccccHHHcccccHHcccccccHHHHcccccHHcccccccccccccHHHHHHccccccccccHHHHcccccccccccccccHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHccccccccHHHHHHHHcccccHcccccccccccEEcccccccccccHHHHHHHHHHHcccccHHHccccccccccccccccccHHHHHHHHcccccccccccccHHccccccHHHHHHHHHHHcccccccccHHcccccccccHHHHHHcccccHHHcccccccccccHHHHcccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEccccHHHHHHHHHHHHccccEcccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHccccccccccccccccccccccccccccccccccccccc
misrimfaddesDIENAFKRampwlgddfgmkdatssifpglSLVQWMSMQqnnqfpaaqsgffpsmvsstglhsnfgtddpsklLNFQAsalaapnlqfskanpqnqvnqlpqspiaWTQQQQLQHLLQnplnqqqqqhpQLHQQRQQQQQLLHPQQSQQQQQQQQnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqiflpthvnngvlvpnanqnvqqptvysqlqqpqlltsntqapqgilsnnknsyqltslpqdsQFQQQMeqstgplqrqqQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLlspagsllqpQLLQQQLAHQQNqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnrpltgtrahsnhtdgdapscstspssnncqispsnflnrnqqgpamlmgdsvvepssnLVQELHsksdarikhelpiskgpehlkyngsmtdqveasssgtsycldpgniqqnfslptycldgdtqshprnslpfvanidgmapdtllsrgydsQKDLHNLLsnyggtprdieTELStaaissqsfavpnipfkpacsnevgineagvlgnglwanQTQRMRTFTKvqkrgsvgrsidvtrykgydELRHDLARMFgiegqledpqssdwklvyvdhendillvgddpwdEFVSCVQSIKILSSAEVQQMSldgdlgnlpvpnqacsgsdsgnawrhyddnsaasfnr
misrimfaddesDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHsksdarikhelpiskgpehlkyNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRtftkvqkrgsvgrsidvtrykgYDELRHDLARMFGIEgqledpqssDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACsgsdsgnawrHYDDNSAASFNR
MISRIMFADDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTqqqqlqhllqnplnqqqqqhpqlhqqrqqqqqllhpqqsqqqqqqqqnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPqdsqfqqqmeqSTGplqrqqqqsqlqqsslqflqqslaqraqqqpqvqqlaqqsmsdqqlqsqlqqklqqqqqqqllspagsllqpqllqqqlahqqnqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnRPLTGTRAHSNHTDGDApscstspssnncQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWRHYDDNSAASFNR
****************AFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSM*********************************************************************************************************************************************************************************VL***********************************************************************************************************************************************************************************************************************************************************************************************YCLDPGNIQQNFSLPTYCLDG*********LPFVANIDGMAPDTLLS********LHNLLSNYG************AAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAE******************************************
***R***ADDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLV****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSA*******************************************
MISRIMFADDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPL**********************************************************************************QQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLP*****************************LQFLQ******************************************LSPAGSLLQPQLLQQ***********************SNNLSASVLVQPQQLPMNQPQ*******************************CQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWRHYDD********
****IMFADDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQ****QHLLQN******QQHP**HQ*******LLHPQQSQQQQQQQQNHHH****************************PQRPQQQP*********QIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLT****************Y**********F****E**TGP*********************LA*********************************************************************************************************************************************************************************************************************************QSHPRNSLPFVANIDGMAPD****RGYDSQKDLHN***********************************************************RMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQM**************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MISRIMFADDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWRHYDDNSAASFNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query762 2.2.26 [Sep-21-2011]
P930221164 Auxin response factor 7 O yes no 0.460 0.301 0.687 1e-131
A3B9A01055 Auxin response factor 16 no no 0.446 0.322 0.557 1e-91
A2YAA51055 Auxin response factor 16 N/A no 0.446 0.322 0.557 1e-91
Q0D9R71161 Auxin response factor 19 no no 0.471 0.309 0.391 8e-59
Q6YZW01116 Auxin response factor 21 no no 0.318 0.217 0.468 5e-54
Q8S983955 Auxin response factor 11 no no 0.123 0.098 0.680 6e-35
Q01K26955 Auxin response factor 11 N/A no 0.123 0.098 0.680 6e-35
P93024902 Auxin response factor 5 O no no 0.127 0.107 0.680 1e-34
Q6H6V4908 Auxin response factor 6 O no no 0.266 0.223 0.410 6e-33
A2X1A1908 Auxin response factor 6 O N/A no 0.266 0.223 0.410 6e-33
>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2 Back     alignment and function desciption
 Score =  470 bits (1209), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 255/371 (68%), Positives = 297/371 (80%), Gaps = 20/371 (5%)

Query: 400  VQPQQLPMNQPQ-NQNRPLTG-TRAHSNHTDG-DAPSCSTSPSSNNCQISPSNFLNRNQQ 456
            +QP Q+ +++PQ  QN P+ G  +A+S  TDG DAPS STSPS+NNCQIS S FLNR+Q 
Sbjct: 806  LQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISSSGFLNRSQS 865

Query: 457  GPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTD-QVEASSSGT 515
            GPA+L+ D+ ++ S NLVQ+L+SKSD R+K EL   +     K   S+TD Q+EAS+SGT
Sbjct: 866  GPAILIPDAAIDMSGNLVQDLYSKSDMRLKQELVGQQ-----KSKASLTDHQLEASASGT 920

Query: 516  SYCLDPG--NIQQNFSLPTYCLDGDTQSHPRNSLPFVANID-GMAPDTLLSRGYDSQKDL 572
            SY LD G  N QQNF  PT+ LDGD+    RNSL   AN+D G  PDTLLSRGYDSQKDL
Sbjct: 921  SYGLDGGENNRQQNFLAPTFGLDGDS----RNSLLGGANVDNGFVPDTLLSRGYDSQKDL 976

Query: 573  HNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQT 632
             N+LSNYGG   DI TE+ST+A+ +QSF VPN+P   A SN++ +N+AGVLG GLW  QT
Sbjct: 977  QNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNVP---AISNDLAVNDAGVLGGGLWPAQT 1033

Query: 633  QRMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHE 692
            QRMRT+TKVQKRGSVGRSIDV RY+GYDELRHDLARMFGIEGQLEDPQ+SDWKLVYVDHE
Sbjct: 1034 QRMRTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHE 1093

Query: 693  NDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWR-H 751
            NDILLVGDDPW+EFV+CVQSIKILSSAEVQQMSLDG+   +PV NQACSG DSGNAWR H
Sbjct: 1094 NDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGH 1153

Query: 752  YDDNSAASFNR 762
            YDDNSA SFNR
Sbjct: 1154 YDDNSATSFNR 1164
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7.
Arabidopsis thaliana (taxid: 3702)
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q8S983|ARFK_ORYSJ Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1 Back     alignment and function description
>sp|Q01K26|ARFK_ORYSI Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2 Back     alignment and function description
>sp|P93024|ARFE_ARATH Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query762
255550359 1119 Auxin response factor, putative [Ricinus 0.704 0.479 0.734 0.0
147770403 1183 hypothetical protein VITISV_023245 [Viti 0.485 0.312 0.795 1e-179
225444647 1084 PREDICTED: auxin response factor 19-like 0.485 0.341 0.795 1e-178
449446636 1092 PREDICTED: auxin response factor 19-like 0.706 0.492 0.691 1e-178
449488115 1097 PREDICTED: auxin response factor 19-like 0.706 0.490 0.691 1e-178
224069204 1057 predicted protein [Populus trichocarpa] 0.488 0.351 0.792 1e-177
356530459 1125 PREDICTED: uncharacterized protein LOC10 0.707 0.479 0.671 1e-169
356565674 1136 PREDICTED: uncharacterized protein LOC10 0.708 0.475 0.685 1e-167
356556410 1122 PREDICTED: uncharacterized protein LOC10 0.707 0.480 0.669 1e-165
224142772 1047 predicted protein [Populus trichocarpa] 0.677 0.492 0.666 1e-164
>gi|255550359|ref|XP_002516230.1| Auxin response factor, putative [Ricinus communis] gi|223544716|gb|EEF46232.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/550 (73%), Positives = 446/550 (81%), Gaps = 13/550 (2%)

Query: 224  VNNGVLVPN--ANQNVQQPTVYSQLQQPQLL---TSNTQAPQGILSNNKNSYQLTSLPQD 278
            VNNGV+ PN   NQ++QQP VYSQLQQ Q     TSNTQ+ Q I +  K SYQLTSLPQ+
Sbjct: 572  VNNGVIAPNQIPNQSMQQPIVYSQLQQQQQQQLLTSNTQS-QNIPAATKGSYQLTSLPQE 630

Query: 279  SQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQ----VQQLAQQSMSDQ 334
            +QFQQQMEQ +   QR QQQ+QLQQS LQ LQQ+L+ RAQ Q Q    V QL Q  +S+Q
Sbjct: 631  TQFQQQMEQQSNLTQRHQQQTQLQQSPLQLLQQNLSHRAQPQTQPQHQVPQLPQPGLSEQ 690

Query: 335  QLQSQLQQKLQQQQQQQLLSPAGS-LLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNN 393
            QL  QL QKLQQQQQ QLLSP  S L    + QQQ+  Q  Q           Q   SN+
Sbjct: 691  QLHLQLLQKLQQQQQHQLLSPTSSPLQPQMIQQQQMHQQNQQFHQSPLSQSQQQPISSNS 750

Query: 394  LSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNR 453
             S + L+Q Q  P++QPQ   +  T  R HS  TDGDAPSCSTSPS+NNCQISPSNFLNR
Sbjct: 751  FSTAALMQSQSFPVSQPQGLQKSPTIIRPHSTLTDGDAPSCSTSPSTNNCQISPSNFLNR 810

Query: 454  NQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSS 513
            NQQ PA++M DSVVEP++NLVQEL+ KSD R+KHE P SKG + LKY G+MTDQ+EASSS
Sbjct: 811  NQQAPALMMSDSVVEPATNLVQELNGKSDIRVKHEFPGSKGADQLKYKGTMTDQLEASSS 870

Query: 514  GTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLH 573
            GTSYCLD GNIQQNFS+PT+ LD D QSHPRNSLPF  NID +APDTLLSRGYDSQKDL 
Sbjct: 871  GTSYCLDAGNIQQNFSIPTFGLD-DVQSHPRNSLPFANNIDSLAPDTLLSRGYDSQKDLQ 929

Query: 574  NLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQ 633
            NLLSNYGGTPRDIETELSTAAISSQSF VPNIPFKP CSN+V IN++GVL  GLWANQTQ
Sbjct: 930  NLLSNYGGTPRDIETELSTAAISSQSFGVPNIPFKPGCSNDVAINDSGVLNGGLWANQTQ 989

Query: 634  RMRTFTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEN 693
            RMRT+TKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEN
Sbjct: 990  RMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEN 1049

Query: 694  DILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWR-HY 752
            DILLVGDDPW+EFVSCVQSIKILSSAEVQQMSLDGDLG++PVPNQACSG+DSGNAWR HY
Sbjct: 1050 DILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGSVPVPNQACSGTDSGNAWRGHY 1109

Query: 753  DDNSAASFNR 762
            DDNSAASFNR
Sbjct: 1110 DDNSAASFNR 1119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147770403|emb|CAN69277.1| hypothetical protein VITISV_023245 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444647|ref|XP_002276637.1| PREDICTED: auxin response factor 19-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449446636|ref|XP_004141077.1| PREDICTED: auxin response factor 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488115|ref|XP_004157943.1| PREDICTED: auxin response factor 19-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224069204|ref|XP_002326300.1| predicted protein [Populus trichocarpa] gi|222833493|gb|EEE71970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530459|ref|XP_003533798.1| PREDICTED: uncharacterized protein LOC100804628 [Glycine max] Back     alignment and taxonomy information
>gi|356565674|ref|XP_003551063.1| PREDICTED: uncharacterized protein LOC100816054 [Glycine max] Back     alignment and taxonomy information
>gi|356556410|ref|XP_003546519.1| PREDICTED: uncharacterized protein LOC100815277 [Glycine max] Back     alignment and taxonomy information
>gi|224142772|ref|XP_002324725.1| predicted protein [Populus trichocarpa] gi|222866159|gb|EEF03290.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query762
TAIR|locus:22022051086 ARF19 "auxin response factor 1 0.442 0.310 0.630 5.5e-151
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.263 0.222 0.405 2.3e-31
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.171 0.140 0.514 1.3e-26
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.131 0.123 0.56 9e-24
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.125 0.121 0.448 5.5e-16
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.123 0.109 0.447 2.9e-15
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.152 0.174 0.391 4e-14
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.124 0.148 0.428 4.7e-14
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.132 0.162 0.439 1.2e-13
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.119 0.151 0.479 2e-13
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1109 (395.4 bits), Expect = 5.5e-151, Sum P(3) = 5.5e-151
 Identities = 225/357 (63%), Positives = 270/357 (75%)

Query:   421 RAHSNHTDGDA---XXXXXXXXXXXXQISPSNFLNRNQQ-GPAMLMG--DSVVEPSSNLV 474
             R+HS HTDG+A                +SP+NFL+RNQQ G A  +   DSV E +SN V
Sbjct:   735 RSHSGHTDGEAPSCSTSPSANNTGHDNVSPTNFLSRNQQQGQAASVSASDSVFERASNPV 794

Query:   475 QELHSKSDARIKHELPISKGP-EHLKYNGSMTDQVEASSSGTSYCLD---PGNIQQNFSL 530
             QEL++K+++RI   +   K   EH ++  ++TDQ++ S++GT+YC D   P   QQ F L
Sbjct:   795 QELYTKTESRISQGMMNMKSAGEHFRFKSAVTDQIDVSTAGTTYCPDVVGPVQQQQTFPL 854

Query:   531 PTYCLDGDTQSH-PRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETE 589
             P++  DGD QSH PRN+L F  N++ +  D L    Y SQKD  NL+ NYG TPRDIETE
Sbjct:   855 PSFGFDGDCQSHHPRNNLAFPGNLEAVTSDPL----Y-SQKDFQNLVPNYGNTPRDIETE 909

Query:   590 LSTAAISSQSFAVPNIPFKPACSNEVG-INEAGVL-GNGLWANQTQRMRTFTKVQKRGSV 647
             LS+AAISSQSF +P+IPFKP CSNEVG IN++G++ G GLW NQTQRMRT+TKVQKRGSV
Sbjct:   910 LSSAAISSQSFGIPSIPFKPGCSNEVGGINDSGIMNGGGLWPNQTQRMRTYTKVQKRGSV 969

Query:   648 GRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFV 707
             GRSIDVTRY GYDELRHDLARMFGIEGQLEDP +SDWKLVY DHENDILLVGDDPW+EFV
Sbjct:   970 GRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFV 1029

Query:   708 SCVQSIKILSSAEVQQMSLDGDLGNLPVPNQACSGSDSGNAWR-HYDDNSAA-SFNR 762
             +CVQ+IKILSS EVQQMSLDGDL  +P  NQACS +DSGNAW+ HY+D SAA SFNR
Sbjct:  1030 NCVQNIKILSSVEVQQMSLDGDLAAIPTTNQACSETDSGNAWKVHYEDTSAAASFNR 1086
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048366 "leaf development" evidence=IGI
GO:0048527 "lateral root development" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0010311 "lateral root formation" evidence=IGI
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0046983 "protein dimerization activity" evidence=IDA
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016396001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (1009 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query762
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 5e-29
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-12
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 8e-12
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-11
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 5e-11
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 9e-11
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 6e-10
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-09
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 2e-07
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 3e-07
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-07
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 6e-07
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 8e-07
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 6e-06
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 7e-06
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 7e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 7e-06
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 2e-05
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 2e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 2e-05
TIGR00618 1042 TIGR00618, sbcc, exonuclease SbcC 5e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 8e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 8e-05
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 1e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 1e-04
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 2e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 3e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 3e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 5e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 5e-04
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 5e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 5e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 6e-04
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 6e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 7e-04
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 7e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 7e-04
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 9e-04
COG1570440 COG1570, XseA, Exonuclease VII, large subunit [DNA 9e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.001
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.001
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 0.001
PRK10927319 PRK10927, PRK10927, essential cell division protei 0.001
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 0.002
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.002
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.002
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.002
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.003
pfam04652315 pfam04652, DUF605, Vta1 like 0.003
COG5624505 COG5624, TAF61, Transcription initiation factor TF 0.003
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.004
COG5624505 COG5624, TAF61, Transcription initiation factor TF 0.004
PRK102461047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 0.004
smart00935140 smart00935, OmpH, Outer membrane protein (OmpH-lik 0.004
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information 
 Score =  113 bits (286), Expect = 5e-29
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 637 TFTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF-----GIEGQLEDPQSSDWKLVYVD 690
           ++ KV   G    R +D+  YK YDEL   L +MF     G  G L+    S++   Y D
Sbjct: 91  SYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIGESGLLDLLNGSEYVPTYED 150

Query: 691 HENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSL 726
            + D +LVGD PW+ FV   + ++I+  +E   ++ 
Sbjct: 151 KDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAP 186

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 762
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 97.77
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 97.36
cd0599281 PB1 The PB1 domain is a modular domain mediating s 97.16
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 96.73
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 96.56
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 96.3
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 96.23
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 96.21
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 96.16
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 93.65
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 93.46
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 93.3
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 92.24
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 91.63
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 83.23
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-44  Score=354.55  Aligned_cols=118  Identities=36%  Similarity=0.630  Sum_probs=5.9

Q ss_pred             ccccccCCCCCCCCCCCccccccCCCcccCCcccccccCccceEEEeecC-cccceeecCCCCCHHHHHHHHHHHh---c
Q 004300          596 SSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF---G  671 (762)
Q Consensus       596 kSQvVGWPPVrsyRkNS~~s~~nd~g~ln~g~~~~~~~~~r~yVKV~MdG-aVGRkVDLs~y~sY~eL~~~Le~MF---g  671 (762)
                      +.++||||||++||||.+...              .....++||||+||| +|||||||++|+||++|+.+|++||   +
T Consensus        83 ~~~~vgwpp~~s~r~n~~~~~--------------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~  148 (215)
T PF02309_consen   83 KAQVVGWPPVRSFRKNSLSEK--------------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFS  148 (215)
T ss_dssp             ---BTTBS----S-------------------------------------------------------------------
T ss_pred             cccccCCCccccccccccccc--------------ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCC
Confidence            789999999999999877611              112358999999999 8999999999999999999999999   6


Q ss_pred             cc----------CccCCCCCCCcEEEEEeCCCCeEecCCCChhhhhhcceEeEEechhhhhhccCC
Q 004300          672 IE----------GQLEDPQSSDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLD  727 (762)
Q Consensus       672 ie----------g~Led~~~s~w~LvYeD~EGD~MLVGDvPWe~Fv~sVKRIrIms~sEv~~m~~~  727 (762)
                      |+          +.+++.++++|+|||+|+||||||||||||+|||++|||||||+.+|+.+|++.
T Consensus       149 i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r  214 (215)
T PF02309_consen  149 IEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPR  214 (215)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCC
Confidence            65          334455678999999999999999999999999999999999999999999873

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query762
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3ghg_B461 Fibrinogen beta chain; triple-stranded coiled coil 2e-05
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 3e-04
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 6e-04
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 7e-04
3ghg_C411 Fibrinogen gamma chain; triple-stranded coiled coi 7e-04
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score = 64.8 bits (157), Expect = 8e-11
 Identities = 35/196 (17%), Positives = 50/196 (25%), Gaps = 7/196 (3%)

Query: 135 QQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQ 194
           Q Q Q+ Q     QQ  Q + PQ                Q   P    Q     P  +  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG-QQQFLTPAQEQL 69

Query: 195 SQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTS 254
            Q                 P             V +    Q  QQP       QP     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 255 NTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLA 314
               P   L       +L     D            P +R    S+L  +S  +++ +L 
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPP--PLVIPPERMLVPSELSNASPDYIRSTL- 186

Query: 315 QRAQQQPQVQQLAQQS 330
                 P+   L ++S
Sbjct: 187 ---NAVPKNSSLLKKS 199
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query762
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 95.99
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 95.72
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 95.13
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 94.93
1oey_J107 P40-PHOX, neutrophil cytosol factor 4; immune syst 93.78
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 93.73
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 93.39
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 92.17
1pqs_A77 Cell division control protein 24; alpha and beta p 89.0
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 88.08
1wj6_A101 KIAA0049 protein, RSGI RUH-024; PB1 domain, protei 82.54
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
Probab=95.99  E-value=0.016  Score=51.32  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             ceEEEeecCcccc-eeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecCC-CChhhhhhcce
Q 004300          637 TFTKVQKRGSVGR-SIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGD-DPWDEFVSCVQ  711 (762)
Q Consensus       637 ~yVKV~MdGaVGR-kVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVGD-vPWe~Fv~sVK  711 (762)
                      .=||..-++.+=| .||-....+|++|+..|+++|.+.       ..++.+.|.|.|||++-+-+ +-..+=+.++|
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence            3456555555533 566667789999999999999853       24689999999999988764 45555556666
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query762
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 96.65
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 95.22
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 92.04
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 89.79
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0013  Score=55.93  Aligned_cols=64  Identities=11%  Similarity=0.261  Sum_probs=49.8

Q ss_pred             eEEEeecCcccc-eeecCCCCCHHHHHHHHHHHhcccCccCCCCCCCcEEEEEeCCCCeEecC-CCChhhhhhcc
Q 004300          638 FTKVQKRGSVGR-SIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVG-DDPWDEFVSCV  710 (762)
Q Consensus       638 yVKV~MdGaVGR-kVDLs~y~sY~eL~~~Le~MFgieg~Led~~~s~w~LvYeD~EGD~MLVG-DvPWe~Fv~sV  710 (762)
                      =|||...|.+=| +|=...-.+|.+|..+|++.|+++         ++.|.|.|.||||.+++ |.=.++.+..+
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~---------~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSINSQGEYEEALKMA   71 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc---------cceEEEEcCCCCEEEEecHHHHHHHHHHH
Confidence            479998885544 565667789999999999999973         26899999999998776 45566665543
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure