Citrus Sinensis ID: 004301
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | yes | no | 0.973 | 0.980 | 0.757 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.946 | 0.930 | 0.457 | 1e-180 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.898 | 0.937 | 0.405 | 1e-138 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.913 | 0.929 | 0.381 | 1e-125 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.660 | 0.624 | 0.259 | 2e-25 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.480 | 0.313 | 0.246 | 5e-09 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.479 | 0.312 | 0.238 | 7e-09 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.479 | 0.312 | 0.238 | 7e-09 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.480 | 0.318 | 0.246 | 7e-09 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.480 | 0.309 | 0.246 | 9e-09 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/754 (75%), Positives = 659/754 (87%), Gaps = 12/754 (1%)
Query: 10 LLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTY 69
LLL LGF VS ++ + + TYI+HMAKS+MP+SF+ H++WY+SSL+S+SDSAE+LYTY
Sbjct: 13 LLLCLGFCHVSSSSSD---QGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAELLYTY 69
Query: 70 DNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDK-SANLFPTSGS 128
+N IHGFST+LT+EEA+SL +PG++SVLPE +YELHTTR+P FLGLD+ +A+LFP +GS
Sbjct: 70 ENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGS 129
Query: 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188
S+V+VGVLDTGVWPESKS+ D G GP+PSSWKG CE GTNF AS CNRKLIGAR+FARG
Sbjct: 130 YSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARG 189
Query: 189 YEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAA 248
YE+T+GPIDESKES+SPRDDDGHGTHT+STAAGSVVEGASL GYA+GTARGMA RARVA
Sbjct: 190 YESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAV 249
Query: 249 YKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVS 308
YKVCW+GGCFSSDILAAI++AI DNVNVLSMSLGGG SDYY+D VAIGAFAAME+GILVS
Sbjct: 250 YKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVS 309
Query: 309 CSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLL 368
CSAGNAGPSS SLSNVAPWITTVGAGTLDRDFPA LGNG+N++GVSL+KG+ LP KLL
Sbjct: 310 CSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLL 369
Query: 369 PFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLAN 428
PF+YAGNASNATNGNLCM TLIPEKV GKIVMCDRG+NARVQKG VVKAAGG+GM+LAN
Sbjct: 370 PFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILAN 429
Query: 429 TESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAF 488
T +NGEELVADAHLLPAT VG+K GD I+ Y+ +DP PT +I GT VGV+PSPVVAAF
Sbjct: 430 TAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAF 489
Query: 489 SSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVS 548
SSRGPNSITP +LKPD+IAPGVNILA W+GA GPTGLA+DSRRV FNIISGTSMSCPHVS
Sbjct: 490 SSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVS 549
Query: 549 GLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSA 608
GLAALLK+ HPEWSPAAIRSALMTTAY +YK+G+ L DIATGK STPFDHGAGHV+P +A
Sbjct: 550 GLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTA 609
Query: 609 LNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIET 668
NPGL+YDLT +DYLGFLCALNYT+ QI S++RR +TCD SK YS+AD NYPSFAVN++
Sbjct: 610 TNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD- 668
Query: 669 AQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVT 728
G KYTR++T+VG GTY V +TS T GVKISVEPA L+F +ANEKKSYTVT
Sbjct: 669 -----GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVT 722
Query: 729 FTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
FTV SS PS +NSF +EWSDGK++VGSP+AISW
Sbjct: 723 FTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 632 bits (1629), Expect = e-180, Method: Compositional matrix adjust.
Identities = 348/760 (45%), Positives = 470/760 (61%), Gaps = 39/760 (5%)
Query: 28 QRATYIIHM-AKSEMPASFEHHTHWYESSLKSV---------SDSAEILYTYDNVIHGFS 77
Q+ TYI+ + SE +F W+ S L+ S+ +LY+Y + I GF+
Sbjct: 24 QKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFA 83
Query: 78 TQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSAN--LFPTSGSASEVIVG 135
QLT EAE L P +++V P+ ++ TT S +FLGLD N ++ S I+G
Sbjct: 84 AQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIG 143
Query: 136 VLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGP 195
VLDTGVWPES SFDDTG+ +P WKG C+ G +F++S+CNRKLIGAR+F RG+ P
Sbjct: 144 VLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSP 203
Query: 196 IDES----KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
+ES +E S RD GHGTHTAST GS V A++ G AG ARGMA A +A YKV
Sbjct: 204 -EESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKV 262
Query: 252 CWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSA 311
CW GC+SSDILAAI+ AI D V+VLS+SLGG Y D++AIG F AME+GI V C+A
Sbjct: 263 CWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFRAMERGISVICAA 322
Query: 312 GNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLP--GKLLP 369
GN GP S++N APW++T+GAGTLDR FPA V L NG+ G SLY G G+ G+ +
Sbjct: 323 GNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGREVE 382
Query: 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429
+Y + C+ +L E++ GK+V+CDRGVN R +KG VK AGG+ M+LANT
Sbjct: 383 VIYVTGGDKGSE--FCLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANT 440
Query: 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFS 489
E N EE D HLLPAT +G +K+Y+ + KP I+F GT +G +P VA FS
Sbjct: 441 EINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFS 500
Query: 490 SRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSG 549
+RGP+ P +LKPDMIAPGVNI+A W +GPTGL DSRRV+F ++SGTSMSCPHVSG
Sbjct: 501 ARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSG 560
Query: 550 LAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSAL 609
+ AL+++A+P WSPAAI+SALMTTA + + G+ ++D K + F GAGHVNP A+
Sbjct: 561 ITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKD--GNKPAGVFAIGAGHVNPQKAI 618
Query: 610 NPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLA-DFNYPSFAVNIET 668
NPGLVY++ DY+ +LC L +T S I ++ + +C+ R + NYPS AV +
Sbjct: 619 NPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKR 678
Query: 669 AQSSSGSSVLKYTRSLTNVGPPGT-YKVFITSSTGPGVKISVEPATLSFTQANEKKSYTV 727
+++ TR +TNVG P + Y V + + G+K+ V P L F ++ SY V
Sbjct: 679 GKTTE-----MITRRVTNVGSPNSIYSVNVKAPE--GIKVIVNPKRLVFKHVDQTLSYRV 731
Query: 728 TFTV--SSMPSNTNSFA--HLEWSDGKYI---VGSPIAIS 760
F + + SFA L W + + V SPI+++
Sbjct: 732 WFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISVT 771
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 304/749 (40%), Positives = 420/749 (56%), Gaps = 64/749 (8%)
Query: 27 DQRATYIIHMAKS-EMPASFE-HHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREE 84
D + YI++M + E P S HH E + S +L+TY +GF+ +LT EE
Sbjct: 29 DGKNIYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEE 88
Query: 85 AESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPE 144
AE + G++SV ELHTTRS +FLG + S S ++VGVLDTG+WPE
Sbjct: 89 AEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPR--RSQVESNIVVGVLDTGIWPE 146
Query: 145 SKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKS 204
S SFDD G P P WKG CET NF CNRK+IGAR + G + G ++
Sbjct: 147 SPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDVN------G 197
Query: 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILA 264
PRD +GHGTHTASTAAG +V A+L+G GTARG AR+AAYKVCW GC +DILA
Sbjct: 198 PRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILA 257
Query: 265 AIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSN 323
A + AI D V+++S+S+GG Y+ D++AIG+F A+E+GIL S SAGN GP+ ++ ++
Sbjct: 258 AYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTAS 317
Query: 324 VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNA---- 379
++PW+ +V A T+DR F V +GNGQ++ GVS+ D + P V + N
Sbjct: 318 LSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDK 374
Query: 380 TNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVAD 439
+ C ++ P + GKIV+C+ ++ AAG L + +NT AD
Sbjct: 375 STSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVL--MTSNTRD-----YAD 427
Query: 440 AHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499
++ LP++ + A Y+ S P TI F+ T + +PVV +FSSRGPN T +
Sbjct: 428 SYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKD 486
Query: 500 LLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP 559
++KPD+ PGV ILA W +V P G R FNIISGTSMSCPH++G+A +K +P
Sbjct: 487 VIKPDISGPGVEILAAWP-SVAPVGGI--RRNTLFNIISGTSMSCPHITGIATYVKTYNP 543
Query: 560 EWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTV 619
WSPAAI+SALMTTA S N A F +G+GHVNP+ A+ PGLVYD
Sbjct: 544 TWSPAAIKSALMTTA--SPMN-------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANE 594
Query: 620 DDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLK 679
DY+ FLC Y + + C + + D NYPSF +++ +Q+ +
Sbjct: 595 SDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN----QY 650
Query: 680 YTRSLTNVGPPG-TYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVT-------FTV 731
+ R+LT+V P TY+ I++ G+ ISV P LSF ++KS+T+T F V
Sbjct: 651 FNRTLTSVAPQASTYRAMISAPQ--GLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVV 708
Query: 732 SSMPSNTNSFAHLEWSDGKYIVGSPIAIS 760
S A L WSDG + V SPI I+
Sbjct: 709 S---------ASLVWSDGVHYVRSPITIT 728
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 289/758 (38%), Positives = 433/758 (57%), Gaps = 62/758 (8%)
Query: 22 AAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAE-----ILYTYDNVIHGF 76
+A++ + YII++ + P + E + + L S++ S E +Y+Y + F
Sbjct: 28 SAEDEHAKDFYIIYLG--DRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAF 85
Query: 77 STQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVGV 136
+ +L+ EA+ + + ++SV +LHTT+S +F+GL +A + +VI+GV
Sbjct: 86 AAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKA--ERDVIIGV 143
Query: 137 LDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPI 196
LDTG+ P+S+SF D GLGP P+ WKG+C NF + CN K+IGA+YF G
Sbjct: 144 LDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNF--TGCNNKIIGAKYFKHDGNVPAG-- 199
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWV-G 255
E +SP D DGHGTHT+ST AG +V ASL+G A GTARG AR+A YKVCW
Sbjct: 200 ----EVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARS 255
Query: 256 GCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAG 315
GC DILA E AI D V ++S+S+GG +DY DS+++G+F AM KGIL SAGN G
Sbjct: 256 GCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDG 315
Query: 316 PSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSG--VSLYKGDGLPGKLLPFVYA 373
PSS +++N PWI TV A +DR F + + LGNG+++SG +S++ K P V
Sbjct: 316 PSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKA---KSYPLVSG 372
Query: 374 GNASNATN----GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAV---VKAAGGLGMVL 426
+A+ T+ C D+L +KV GK+++C R+ G V +K+ GG G ++
Sbjct: 373 VDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVC------RMGGGGVESTIKSYGGAGAII 426
Query: 427 ANTE--SNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPV 484
+ + N + +A PAT+V GD I Y+ S + I + T+ P+P
Sbjct: 427 VSDQYLDNAQIFMA-----PATSVNSSVGDIIYRYINSTRSASAVI--QKTRQVTIPAPF 479
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
VA+FSSRGPN + LLKPD+ APG++ILA ++ TGL D++ F I+SGTSM+C
Sbjct: 480 VASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMAC 539
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
PHV+G+AA +K+ HP+W+PAAI+SA++T+A + K + F +G G +N
Sbjct: 540 PHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNKDAE---------FAYGGGQIN 590
Query: 605 PVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLA-RRKFTCDASKRYSLAD-FNYPSF 662
P A +PGLVYD+ Y+ FLC Y A+ + L R +C + D NYP+
Sbjct: 591 PRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTI 650
Query: 663 AVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGP-GVKISVEPATLSFTQANE 721
+ + +A++ S++ + R +TNVGPP + V+ + P GV+I+VEP +LSF++A++
Sbjct: 651 QLTLRSAKT---STLAVFRRRVTNVGPPSS--VYTATVRAPKGVEITVEPQSLSFSKASQ 705
Query: 722 KKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAI 759
K+S+ V M L W ++ V SPI I
Sbjct: 706 KRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 151/583 (25%), Positives = 252/583 (43%), Gaps = 80/583 (13%)
Query: 13 VLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAE-------- 64
V G D++ + ++ T I+ + + + + E +S LK+ A+
Sbjct: 44 VFGDIDMTTS-----KKTTVIVELKEKSLAEAKEAGESQSKSKLKTARTKAKNKAIKAVK 98
Query: 65 ---ILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSAN 121
+ Y+ V GFS +L E L + +V P + Y K+ N
Sbjct: 99 NGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTY--------------KTDN 144
Query: 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGAC-ETGTNFNASNCNRKLI 180
+ + SE V P + D LG K A +TG +N + +
Sbjct: 145 MKDKDVTISEDAVSPQMDDSAPYIGANDAWDLGYTGKGIKVAIIDTGVEYNHPDLKKNF- 203
Query: 181 GARYFARGYEATLGPID-ESKESKSPRDD-DGHGTHTASTAAGSVVEGASLFGYAAGTAR 238
+Y +GY+ D + + PR + HGTH A T A A GT +
Sbjct: 204 -GQY--KGYDFVDNDYDPKETPTGDPRGEATDHGTHVAGTVA------------ANGTIK 248
Query: 239 GMATRARVAAYKVCWVGGCFSSD-ILAAIEQAIDDNVNVLSMSLGGGTSD-YYKDSVAIG 296
G+A A + AY+V GG +++ ++A +E+A+ D +V+++SLG ++ + S A+
Sbjct: 249 GVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTALD 308
Query: 297 AFAAMEKGILVSCSAGNAGPSSYSLSN--VAPWITTVGAGTLDRDFPAFVSLGNGQNYSG 354
AM +G++ S GN+GP+ +++ + + +VGA L + A V+ G+ +
Sbjct: 309 W--AMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPLNEYA-VTFGSYSSAKV 365
Query: 355 VSLYKGD---GLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQ 411
+ K D L K + V AG + + + GK+ + RG A V
Sbjct: 366 MGYNKEDDVKALNNKEVELVEAG---------IGEAKDFEGKDLTGKVAVVKRGSIAFVD 416
Query: 412 KGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTIL 471
K K AG +GMV+ N S E +P + + G+ + S L + T L
Sbjct: 417 KADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKTTFKL 476
Query: 472 FEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRR 531
+G + VA FSSRGP + ++KPD+ APGVNI++ PT
Sbjct: 477 TVSKALGEQ----VADFSSRGP-VMDTWMIKPDISAPGVNIVSTI-----PT--HDPDHP 524
Query: 532 VSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
+ GTSM+ PH++G A++K A P+WS I++A+M TA
Sbjct: 525 YGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTA 567
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Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 81/447 (18%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSV-VEGASLFGYAAGTARGMATRARVAAYKVCWVG 255
D SK+ K+ D + HGTH + +G+ E + G A++ +V V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVN 233
Query: 256 GC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK--DSVAIGAFAAMEKGILVSCSA 311
G ++ + AI A++ V++MS G Y D A KG+ + SA
Sbjct: 234 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 293
Query: 312 GN----AGPSSYSLSN-----------VAPWITTVGAGTLDRDFP--AFVSLGNGQNYSG 354
GN G + L++ A TV + + D+ A V + Q+
Sbjct: 294 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQDKEM 353
Query: 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGA 414
L P K + YA N M + + V GKI + +RG K A
Sbjct: 354 PVLSTNRFEPNKAYDYAYA---------NRGMKEDDFKD-VKGKIALIERGDIDFKDKVA 403
Query: 415 VVKAAGGLGMVLANTESNGEEL-VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFE 473
K AG +G+++ + + G + + + +PA + +K G +K P TI F
Sbjct: 404 NAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFN 457
Query: 474 GTKVGVEPSP---VVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATDS 529
T V P+ ++ FSS G +T + +KPD+ APG +IL+ +
Sbjct: 458 ATP-KVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN---------- 503
Query: 530 RRVSFNIISGTSMSCPHVSGLAALLK----AAHPEWSPAA----IRSALMTTAYVSYKNG 581
+ +SGTSMS P V+G+ LL+ +P+ +P+ + LM++A Y
Sbjct: 504 ---KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDED 560
Query: 582 QKLQDIATGKASTPFDHGAGHVNPVSA 608
+K +P GAG V+ A
Sbjct: 561 EKA-------YFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 178/448 (39%), Gaps = 83/448 (18%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSV-VEGASLFGYAAGTARGMATRARVAAYKVCWVG 255
D SK+ K+ D + HGTH + +G+ E + G A++ +V V
Sbjct: 182 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVN 235
Query: 256 GC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK--DSVAIGAFAAMEKGILVSCSA 311
G ++ + AI A++ V++MS G Y D A KG+ + SA
Sbjct: 236 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 295
Query: 312 GN----AGPSSYSLSN-----------VAPWITTVGAGTLDRDFP--AFVSLGNGQNYSG 354
GN G + L++ A TV + + D+ A V + Q+
Sbjct: 296 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEM 355
Query: 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGA 414
L P K + YA + + + V GKI + +RG K A
Sbjct: 356 PVLSTNRFEPNKAYDYAYANRGTKEDDF----------KDVKGKIALIERGDIDFKDKIA 405
Query: 415 VVKAAGGLGMVLANTESNGEEL-VADAHLLPATAVGQKFG----DAIKSYLVSDPKPTVT 469
K AG +G+++ + + G + + + +PA + +K G D K + + P V
Sbjct: 406 NAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVL 465
Query: 470 ILFEGTKVGVEPSPVVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATD 528
GTK+ + FSS G +T + +KPD+ APG +IL+ +
Sbjct: 466 PTASGTKL--------SRFSSWG---LTADGNIKPDIAAPGQDILSSVANN--------- 505
Query: 529 SRRVSFNIISGTSMSCPHVSGLAALLK----AAHPEWSPAA----IRSALMTTAYVSYKN 580
+ +SGTSMS P V+G+ LL+ +P+ +P+ + LM++A Y
Sbjct: 506 ----KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDE 561
Query: 581 GQKLQDIATGKASTPFDHGAGHVNPVSA 608
+K +P GAG V+ A
Sbjct: 562 DEKA-------YFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 178/448 (39%), Gaps = 83/448 (18%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSV-VEGASLFGYAAGTARGMATRARVAAYKVCWVG 255
D SK+ K+ D + HGTH + +G+ E + G A++ +V V
Sbjct: 182 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVN 235
Query: 256 GC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK--DSVAIGAFAAMEKGILVSCSA 311
G ++ + AI A++ V++MS G Y D A KG+ + SA
Sbjct: 236 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 295
Query: 312 GN----AGPSSYSLSN-----------VAPWITTVGAGTLDRDFP--AFVSLGNGQNYSG 354
GN G + L++ A TV + + D+ A V + Q+
Sbjct: 296 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEM 355
Query: 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGA 414
L P K + YA + + + V GKI + +RG K A
Sbjct: 356 PVLSTNRFEPNKAYDYAYANRGTKEDDF----------KDVKGKIALIERGDIDFKDKIA 405
Query: 415 VVKAAGGLGMVLANTESNGEEL-VADAHLLPATAVGQKFG----DAIKSYLVSDPKPTVT 469
K AG +G+++ + + G + + + +PA + +K G D K + + P V
Sbjct: 406 NAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVL 465
Query: 470 ILFEGTKVGVEPSPVVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATD 528
GTK+ + FSS G +T + +KPD+ APG +IL+ +
Sbjct: 466 PTASGTKL--------SRFSSWG---LTADGNIKPDIAAPGQDILSSVANN--------- 505
Query: 529 SRRVSFNIISGTSMSCPHVSGLAALLK----AAHPEWSPAA----IRSALMTTAYVSYKN 580
+ +SGTSMS P V+G+ LL+ +P+ +P+ + LM++A Y
Sbjct: 506 ----KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDE 561
Query: 581 GQKLQDIATGKASTPFDHGAGHVNPVSA 608
+K +P GAG V+ A
Sbjct: 562 DEKA-------YFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 81/447 (18%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSV-VEGASLFGYAAGTARGMATRARVAAYKVCWVG 255
D SK+ K+ D + HGTH + +G+ E + G A++ +V V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVN 233
Query: 256 GC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK--DSVAIGAFAAMEKGILVSCSA 311
G ++ + AI A++ V++MS G Y D A KG+ + SA
Sbjct: 234 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 293
Query: 312 GN----AGPSSYSLSN-----------VAPWITTVGAGTLDRDFP--AFVSLGNGQNYSG 354
GN G + L++ A TV + + D+ A V + Q+
Sbjct: 294 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEM 353
Query: 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGA 414
L P K + YA N M + + V GKI + +RG K A
Sbjct: 354 PVLSTNRFEPNKAYDYAYA---------NRGMKEDDFKD-VKGKIALIERGDIDFKDKIA 403
Query: 415 VVKAAGGLGMVLANTESNGEEL-VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFE 473
K AG +G+++ + + G + + + +PA + +K G L+ P TI F
Sbjct: 404 NAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKTITFN 457
Query: 474 GTKVGVEPSP---VVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATDS 529
T V P+ ++ FSS G +T + +KPD+ APG +IL+ +
Sbjct: 458 ATP-KVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN---------- 503
Query: 530 RRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAA----IRSALMTTAYVSYKNG 581
+ +SGTSMS P V+G+ LL+ +P+ +P+ + LM++A Y
Sbjct: 504 ---KYAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALYDED 560
Query: 582 QKLQDIATGKASTPFDHGAGHVNPVSA 608
+K +P GAG V+ A
Sbjct: 561 EKA-------YFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 180/447 (40%), Gaps = 81/447 (18%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSV-VEGASLFGYAAGTARGMATRARVAAYKVCWVG 255
D SK+ K+ D + HGTH + +G+ E + G A++ +V V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVN 233
Query: 256 GC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK--DSVAIGAFAAMEKGILVSCSA 311
G ++ + AI A++ V++MS G Y D A KG+ + SA
Sbjct: 234 GLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSA 293
Query: 312 GN----AGPSSYSLSN-----------VAPWITTVGAGTLDRDFP--AFVSLGNGQNYSG 354
GN G + L++ A TV + + D+ A V + Q+
Sbjct: 294 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEM 353
Query: 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGA 414
L P K + YA N M + + V GKI + +RG K A
Sbjct: 354 PVLSTNRFEPNKAYDYAYA---------NRGMKEDDFKD-VKGKIALIERGDIDFKDKIA 403
Query: 415 VVKAAGGLGMVLANTESNGEEL-VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFE 473
K AG +G+++ + + G + + + +PA + +K G L+ P TI F
Sbjct: 404 NAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKTITFN 457
Query: 474 GTKVGVEPSP---VVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATDS 529
T V P+ ++ FSS G +T + +KPD+ APG +IL+ +
Sbjct: 458 ATP-KVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN---------- 503
Query: 530 RRVSFNIISGTSMSCPHVSGLAALLK----AAHPEWSPAA----IRSALMTTAYVSYKNG 581
+ +SGTSMS P V+G+ LL+ +P+ +P+ + LM++A Y
Sbjct: 504 ---KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDED 560
Query: 582 QKLQDIATGKASTPFDHGAGHVNPVSA 608
+K +P GAG V+ A
Sbjct: 561 EKA-------YFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| 255584904 | 760 | Xylem serine proteinase 1 precursor, put | 0.971 | 0.973 | 0.821 | 0.0 | |
| 225438930 | 767 | PREDICTED: subtilisin-like protease-like | 0.997 | 0.990 | 0.783 | 0.0 | |
| 148299083 | 768 | subtilisin-like protease [Nicotiana taba | 0.975 | 0.967 | 0.777 | 0.0 | |
| 449520096 | 761 | PREDICTED: subtilisin-like protease-like | 0.982 | 0.984 | 0.783 | 0.0 | |
| 449448266 | 761 | PREDICTED: subtilisin-like protease-like | 0.982 | 0.984 | 0.783 | 0.0 | |
| 148299085 | 768 | subtilisin-like protease [Nicotiana taba | 0.975 | 0.967 | 0.774 | 0.0 | |
| 357476353 | 757 | Subtilisin-like protease [Medicago trunc | 0.984 | 0.990 | 0.759 | 0.0 | |
| 356563545 | 760 | PREDICTED: subtilisin-like protease-like | 0.986 | 0.989 | 0.755 | 0.0 | |
| 18425181 | 757 | subtilisin-like protease [Arabidopsis th | 0.973 | 0.980 | 0.757 | 0.0 | |
| 356511935 | 755 | PREDICTED: subtilisin-like protease-like | 0.985 | 0.994 | 0.753 | 0.0 |
| >gi|255584904|ref|XP_002533167.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223527039|gb|EEF29226.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/747 (82%), Positives = 686/747 (91%), Gaps = 7/747 (0%)
Query: 19 VSVAAQNPDQ---RATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHG 75
VS+A+ ++ ++TYI+HM+KSEMPASF+HHTHWY+SSLKSVSDSA+++YTY+N IHG
Sbjct: 18 VSIASTMEEKDGSKSTYIVHMSKSEMPASFQHHTHWYDSSLKSVSDSAQMIYTYENAIHG 77
Query: 76 FSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVG 135
FST+LT EEAE L+ +PGILSVLPEL+YELHTTR+PEFLGLDKSA+ FP S S +V+VG
Sbjct: 78 FSTRLTSEEAELLQAQPGILSVLPELRYELHTTRTPEFLGLDKSADFFPESDSVGDVVVG 137
Query: 136 VLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGP 195
VLDTGVWPESKSF DTG+GP+PS+WKG CETGTNF +NCNRKLIGAR+FA GYEATLGP
Sbjct: 138 VLDTGVWPESKSFADTGMGPIPSTWKGQCETGTNFTTANCNRKLIGARFFANGYEATLGP 197
Query: 196 IDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG 255
+DESKESKSPRDDDGHGTHTASTAAGS+VEGASL GYA+GTARGMATRARVA YKVCW+G
Sbjct: 198 VDESKESKSPRDDDGHGTHTASTAAGSLVEGASLLGYASGTARGMATRARVAVYKVCWIG 257
Query: 256 GCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAG 315
GCFSSDIL A+++AI+D VNVLSMSLGGG SDY+KDSVAIGAFAAMEKGILVSCSAGNAG
Sbjct: 258 GCFSSDILKAMDKAIEDGVNVLSMSLGGGMSDYFKDSVAIGAFAAMEKGILVSCSAGNAG 317
Query: 316 PSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGN 375
P+SYSLSNVAPWITTVGAGTLDRDFPAFVSLGNG+NYSGVSL+KG LPGKLLPF+YAGN
Sbjct: 318 PTSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGRNYSGVSLFKGSSLPGKLLPFIYAGN 377
Query: 376 ASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435
ASN+TNGNLCMMD+LIPEKVAGKIV+CDRGVNARVQKGAVVK AGGLGMVLANT +NGEE
Sbjct: 378 ASNSTNGNLCMMDSLIPEKVAGKIVLCDRGVNARVQKGAVVKEAGGLGMVLANTPANGEE 437
Query: 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495
LVADAHLLPAT+VG+K G+AIKSYL SDP PTVTILFEGTKVG++PSPVVAAFSSRGPNS
Sbjct: 438 LVADAHLLPATSVGEKNGNAIKSYLSSDPNPTVTILFEGTKVGIQPSPVVAAFSSRGPNS 497
Query: 496 ITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLK 555
ITP++LKPDMIAPGVNILAGWSGAVGPTGL+TD+RRV FNIISGTSMSCPHVSGLAALLK
Sbjct: 498 ITPQVLKPDMIAPGVNILAGWSGAVGPTGLSTDTRRVDFNIISGTSMSCPHVSGLAALLK 557
Query: 556 AAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVY 615
AAHP+W+PAAIRSALMTTAYVSYKNG+ LQD A+GK STPFDHGAGHV+PVSALNPGLVY
Sbjct: 558 AAHPDWTPAAIRSALMTTAYVSYKNGRNLQDSASGKDSTPFDHGAGHVDPVSALNPGLVY 617
Query: 616 DLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGS 675
DLT DDYL FLCALNYTA++I SLAR++FTCD+SK+YSL D NYPSFAVN + S G+
Sbjct: 618 DLTADDYLSFLCALNYTAAEITSLARKRFTCDSSKKYSLNDLNYPSFAVNFD---SIGGA 674
Query: 676 SVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMP 735
SV KYTR+LTNVG GTYK I S GVKISVEP TLSF QANEKKSYTVTFT SSMP
Sbjct: 675 SVAKYTRTLTNVGTAGTYKASI-SGQALGVKISVEPETLSFIQANEKKSYTVTFTGSSMP 733
Query: 736 SNTNSFAHLEWSDGKYIVGSPIAISWN 762
+NTN+FA LEWSDGK++VGSPIA+SWN
Sbjct: 734 TNTNAFARLEWSDGKHVVGSPIAVSWN 760
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438930|ref|XP_002284101.1| PREDICTED: subtilisin-like protease-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/767 (78%), Positives = 685/767 (89%), Gaps = 7/767 (0%)
Query: 1 MKTFKSLISL-LLVLGFFDVSVAA--QNPDQRATYIIHMAKSEMPASFEHHTHWYESSLK 57
MK L+++ L +LGF V VAA +N ++R TYI+HMA S+MP SF+ HWY+SSLK
Sbjct: 1 MKGLGFLLTVALTLLGFCHVFVAAVERNDEERRTYIVHMATSQMPESFQERAHWYDSSLK 60
Query: 58 SVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLD 117
SVS+SAE+LY Y NVIHGFST+LT EEA SL+ RPGILS+L E++YELHTTR+PEFLGLD
Sbjct: 61 SVSESAEMLYKYSNVIHGFSTRLTAEEARSLQGRPGILSILEEVRYELHTTRTPEFLGLD 120
Query: 118 KSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNR 177
KSA+LFP SGSASEVI+GVLDTG+WPESKSFDDTGLGP+PSSWKG CETGTNF +S+CNR
Sbjct: 121 KSADLFPESGSASEVIIGVLDTGIWPESKSFDDTGLGPIPSSWKGECETGTNFTSSSCNR 180
Query: 178 KLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTA 237
KLIGAR+F++GYEATLGPIDESKESKSPRDDDGHGTHTA+TAAGSVVEGASLFG+A GTA
Sbjct: 181 KLIGARFFSKGYEATLGPIDESKESKSPRDDDGHGTHTATTAAGSVVEGASLFGFAEGTA 240
Query: 238 RGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGA 297
RGMATRAR+AAYKVCW+GGCFS+DILAA+++A++DNVN+LS+SLGGG SDYY+DSVA+GA
Sbjct: 241 RGMATRARIAAYKVCWIGGCFSTDILAALDKAVEDNVNILSLSLGGGMSDYYRDSVAMGA 300
Query: 298 FAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357
F AMEKGILVSCSAGN+GPS YSLSNVAPWITTVGAGTLDRDFPAFVSLGNG+NYSGVSL
Sbjct: 301 FGAMEKGILVSCSAGNSGPSPYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGKNYSGVSL 360
Query: 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVK 417
Y+GD LPG LLPFVYAGNASNA NGNLCM +TLIPEKVAGK+VMCDRGVN RVQKG+VVK
Sbjct: 361 YRGDPLPGTLLPFVYAGNASNAPNGNLCMTNTLIPEKVAGKMVMCDRGVNPRVQKGSVVK 420
Query: 418 AAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKV 477
AAGG+GMVLANT +NGEELVADAHLLPATAVGQK GDAIKSYL SD TVTILFEGTKV
Sbjct: 421 AAGGIGMVLANTGTNGEELVADAHLLPATAVGQKSGDAIKSYLFSDHDATVTILFEGTKV 480
Query: 478 GVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNII 537
G++PSPVVAAFSSRGPNSITP++LKPD+IAPGVNILAGWSGAVGPTGL TD R V FNII
Sbjct: 481 GIQPSPVVAAFSSRGPNSITPDILKPDLIAPGVNILAGWSGAVGPTGLPTDKRHVDFNII 540
Query: 538 SGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFD 597
SGTSMSCPH+SGLA LLKAAHPEWSPAAIRSALMTTAY +YK+GQK+QD+ATGK ST FD
Sbjct: 541 SGTSMSCPHISGLAGLLKAAHPEWSPAAIRSALMTTAYTNYKSGQKIQDVATGKPSTAFD 600
Query: 598 HGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADF 657
HGAGHV+PVSALNPGL+YDLTVDDYL FLCA+NY+A QI+ LA+R FTCD K+YS+AD
Sbjct: 601 HGAGHVDPVSALNPGLIYDLTVDDYLNFLCAINYSAPQISILAKRNFTCDTDKKYSVADL 660
Query: 658 NYPSFAVNIETAQSSSG---SSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATL 714
NYPSFAV ++T G S+V+K+TR+LTNVG P TYKV I S + VKISVEP +L
Sbjct: 661 NYPSFAVPLQTPLGGGGEGSSTVVKHTRTLTNVGSPSTYKVSIFSES-ESVKISVEPGSL 719
Query: 715 SFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
SF++ NEKKS+ VTFT +SMPSNTN F +EWSDGK++VGSPI +SW
Sbjct: 720 SFSELNEKKSFKVTFTATSMPSNTNIFGRIEWSDGKHVVGSPIVVSW 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148299083|gb|ABQ58079.1| subtilisin-like protease [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/746 (77%), Positives = 657/746 (88%), Gaps = 3/746 (0%)
Query: 19 VSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFST 78
V+ ++++TYI+H+AKS+MP SFE H HWY+SSLKSVSDSAE+LY Y+NV+HGFS
Sbjct: 22 VATIGSTSNKKSTYIVHVAKSQMPESFEDHKHWYDSSLKSVSDSAEMLYVYNNVVHGFSA 81
Query: 79 QLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVGVLD 138
+LT +EAESLE++ GILSVLPEL+YELHTTR+P FLGLD+SA+ FP S + S+V+VGVLD
Sbjct: 82 RLTIQEAESLERQSGILSVLPELRYELHTTRTPSFLGLDRSADFFPESNAMSDVVVGVLD 141
Query: 139 TGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198
TGVWPESKSFDDTGLGP+P SWKG CE+GTNF++SNCNRKLIGARYF++GYE TLGP+D
Sbjct: 142 TGVWPESKSFDDTGLGPIPDSWKGECESGTNFSSSNCNRKLIGARYFSKGYETTLGPVDV 201
Query: 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCF 258
SKESKS RDDDGHGTHTA+TAAGSVV+GASLFGYA+GTARGMATRARVA YKVCW+GGCF
Sbjct: 202 SKESKSARDDDGHGTHTATTAAGSVVQGASLFGYASGTARGMATRARVAVYKVCWIGGCF 261
Query: 259 SSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS 318
SSDILAA+++AIDDNVNVLS+SLGGG SDYY+DSVAIGAFAAMEKGILVSCSAGNAGPS
Sbjct: 262 SSDILAAMDKAIDDNVNVLSLSLGGGNSDYYRDSVAIGAFAAMEKGILVSCSAGNAGPSP 321
Query: 319 YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASN 378
YSLSNVAPWITTVGAGTLDRDFPA+VSLGNG+N+SGVSLYKGD K+LPFVYAGNASN
Sbjct: 322 YSLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNFSGVSLYKGDLSLSKMLPFVYAGNASN 381
Query: 379 ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438
TNGNLCM TLIPEKV GKIV+CDRG+N RVQKG+VVK AGG+GMVLANT +NG+ELVA
Sbjct: 382 TTNGNLCMTGTLIPEKVKGKIVLCDRGINPRVQKGSVVKEAGGVGMVLANTAANGDELVA 441
Query: 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITP 498
DAHLLPAT VGQ G+AIK YL SDP PT TILFEGTKVG++PSPVVAAFSSRGPNSIT
Sbjct: 442 DAHLLPATTVGQTTGEAIKKYLTSDPNPTATILFEGTKVGIKPSPVVAAFSSRGPNSITQ 501
Query: 499 ELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH 558
E+LKPD+IAPGVNILAGW+GAVGPTGLA D+RRV FNIISGTSMSCPHVSGLAALLK AH
Sbjct: 502 EILKPDIIAPGVNILAGWTGAVGPTGLAEDTRRVGFNIISGTSMSCPHVSGLAALLKGAH 561
Query: 559 PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLT 618
P+WSPAAIRSALMTTAY YKNG LQD++TGK STPFDHGAGHV+PV+ALNPGLVYDL
Sbjct: 562 PDWSPAAIRSALMTTAYTVYKNGGALQDVSTGKPSTPFDHGAGHVDPVAALNPGLVYDLR 621
Query: 619 VDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIE---TAQSSSGS 675
DDYL FLCALNYT+ QINS+ARR + C+ SK+YS+ D NYPSFAV TA S S S
Sbjct: 622 ADDYLNFLCALNYTSIQINSIARRNYNCETSKKYSVTDLNYPSFAVVFPEQMTAGSGSSS 681
Query: 676 SVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMP 735
S +KYTR+LTNVGP GTYKV S VK+SVEP TL FT+ANE+KSYTVTFT SMP
Sbjct: 682 SSVKYTRTLTNVGPAGTYKVSTVFSPSNSVKVSVEPETLVFTRANEQKSYTVTFTAPSMP 741
Query: 736 SNTNSFAHLEWSDGKYIVGSPIAISW 761
S TN + +EWSDGK++VGSP+AISW
Sbjct: 742 STTNVYGRIEWSDGKHVVGSPVAISW 767
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520096|ref|XP_004167070.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1214 bits (3142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/757 (78%), Positives = 669/757 (88%), Gaps = 8/757 (1%)
Query: 10 LLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTY 69
+ L+L FF SV + + TYI+HMAK +MP SFEHH HWY+SSL+SVSDSAE++Y Y
Sbjct: 7 IFLLLCFF--SVPSMAVGDKKTYIVHMAKYQMPESFEHHLHWYDSSLRSVSDSAEMIYAY 64
Query: 70 DNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSA 129
+NV+HGFST+LT EEA+ LE +PGIL+V+PE++YELHTTRSPEFLGLDK+ANL+P S S
Sbjct: 65 NNVVHGFSTRLTAEEAQRLEAQPGILAVVPEMRYELHTTRSPEFLGLDKNANLYPESNSV 124
Query: 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGY 189
SEVI+GVLDTG+ PESKSFDDTGLGPVPSSWKG CE+GTNF+ASNCNRKL+GAR+F++GY
Sbjct: 125 SEVIIGVLDTGISPESKSFDDTGLGPVPSSWKGECESGTNFSASNCNRKLVGARFFSKGY 184
Query: 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAY 249
EATLGPIDESKES+SPRDDDGHGTHTASTAAGSVVE ASLFGYA+GTARGMA RARVAAY
Sbjct: 185 EATLGPIDESKESRSPRDDDGHGTHTASTAAGSVVENASLFGYASGTARGMAARARVAAY 244
Query: 250 KVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSC 309
KVCW GGCFSSDI+AAI++A+DDNVNVLSMSLGGG SDYYKDSVA GAFAAMEKGILVSC
Sbjct: 245 KVCWAGGCFSSDIVAAIDKAVDDNVNVLSMSLGGGVSDYYKDSVATGAFAAMEKGILVSC 304
Query: 310 SAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLP 369
SAGNAGPS +SLSN +PWITTVGAGTLDRDFPA+VSLG+ +N+SGVSLY+G LPG LLP
Sbjct: 305 SAGNAGPSPFSLSNTSPWITTVGAGTLDRDFPAYVSLGDAKNFSGVSLYRGKSLPGTLLP 364
Query: 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429
F+YA NASN+ NGNLCM TLIPEKVAGK+V CDRGVN RVQKGAVVKAAGG+GMVLANT
Sbjct: 365 FIYAANASNSGNGNLCMTGTLIPEKVAGKVVFCDRGVNPRVQKGAVVKAAGGIGMVLANT 424
Query: 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFS 489
+NGEELVAD+HLLPATAVGQK GD I+ YLVSDP PTVTILFEGTK+G+EPSPVVAAFS
Sbjct: 425 AANGEELVADSHLLPATAVGQKSGDTIRKYLVSDPSPTVTILFEGTKLGIEPSPVVAAFS 484
Query: 490 SRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSG 549
SRGPNSITP+LLKPD+IAPGVNILAGWS +VGP+GLA D RRV FNIISGTSMSCPHVSG
Sbjct: 485 SRGPNSITPQLLKPDIIAPGVNILAGWSKSVGPSGLAIDDRRVDFNIISGTSMSCPHVSG 544
Query: 550 LAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSAL 609
LAAL+K AHP+WSPAAIRSALMTTAY +YKNGQK+QDIATGK STPFDHGAGHV+PVSAL
Sbjct: 545 LAALIKGAHPDWSPAAIRSALMTTAYTAYKNGQKIQDIATGKPSTPFDHGAGHVDPVSAL 604
Query: 610 NPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIE-- 667
NPGLVYDLTVDDYL FLCALNYT SQINSLAR+ FTCD+ K+YS+ D NYPSFAV E
Sbjct: 605 NPGLVYDLTVDDYLNFLCALNYTPSQINSLARKDFTCDSKKKYSVNDLNYPSFAVVFEGV 664
Query: 668 TAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY-- 725
SGSSV+K+TR+LTNVG PGTYKV ITS T VKISVEP +LSFT AN+KKSY
Sbjct: 665 LGGGGSGSSVVKHTRTLTNVGSPGTYKVSITSET-KSVKISVEPESLSFTGANDKKSYTV 723
Query: 726 -TVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
T T S+ P++ +F +EWSDGK++VGSPIA SW
Sbjct: 724 TFTTTTSSAAPTSAEAFGRIEWSDGKHVVGSPIAFSW 760
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448266|ref|XP_004141887.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/757 (78%), Positives = 668/757 (88%), Gaps = 8/757 (1%)
Query: 10 LLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTY 69
+ L+L FF SV + + TYI+HMAK +MP SFEHH HWY+SSL+SVSDSAE++Y Y
Sbjct: 7 MFLLLCFF--SVPSMAVGDKKTYIVHMAKYQMPESFEHHLHWYDSSLRSVSDSAEMIYAY 64
Query: 70 DNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSA 129
+NV+HGFST+LT EEA+ LE +PGIL+V+PE+ YELHTTRSPEFLGLDK+ANL+P S S
Sbjct: 65 NNVVHGFSTRLTAEEAQRLEAQPGILAVVPEMIYELHTTRSPEFLGLDKNANLYPESNSV 124
Query: 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGY 189
SEVI+GVLDTG+ PESKSFDDTGLGPVPSSWKG CE+GTNF+ASNCNRKL+GAR+F++GY
Sbjct: 125 SEVIIGVLDTGISPESKSFDDTGLGPVPSSWKGECESGTNFSASNCNRKLVGARFFSKGY 184
Query: 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAY 249
EATLGPIDESKES+SPRDDDGHGTHTASTAAGSVVE ASLFGYA+GTARGMA RARVAAY
Sbjct: 185 EATLGPIDESKESRSPRDDDGHGTHTASTAAGSVVENASLFGYASGTARGMAARARVAAY 244
Query: 250 KVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSC 309
KVCW GGCFSSDI+AAI++A+DDNVNVLSMSLGGG SDYYKDSVA GAFAAMEKGILVSC
Sbjct: 245 KVCWAGGCFSSDIVAAIDKAVDDNVNVLSMSLGGGVSDYYKDSVATGAFAAMEKGILVSC 304
Query: 310 SAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLP 369
SAGNAGPS +SLSN +PWITTVGAGTLDRDFPA+VSLG+ +N+SGVSLY+G LPG LLP
Sbjct: 305 SAGNAGPSPFSLSNTSPWITTVGAGTLDRDFPAYVSLGDAKNFSGVSLYRGKSLPGTLLP 364
Query: 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429
F+YA NASN+ NGNLCM TLIPEKVAGK+V CDRGVN RVQKGAVVKAAGG+GMVLANT
Sbjct: 365 FIYAANASNSGNGNLCMTGTLIPEKVAGKVVFCDRGVNPRVQKGAVVKAAGGIGMVLANT 424
Query: 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFS 489
+NGEELVAD+HLLPATAVGQK GD I+ YLVSDP PTVTILFEGTK+G+EPSPVVAAFS
Sbjct: 425 AANGEELVADSHLLPATAVGQKSGDTIRKYLVSDPSPTVTILFEGTKLGIEPSPVVAAFS 484
Query: 490 SRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSG 549
SRGPNSITP+LLKPD+IAPGVNILAGWS +VGP+GLA D RRV FNIISGTSMSCPHVSG
Sbjct: 485 SRGPNSITPQLLKPDIIAPGVNILAGWSKSVGPSGLAIDDRRVDFNIISGTSMSCPHVSG 544
Query: 550 LAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSAL 609
LAAL+K AHP+WSPAAIRSALMTTAY +YKNGQK+QDIATGK STPFDHGAGHV+PVSAL
Sbjct: 545 LAALIKGAHPDWSPAAIRSALMTTAYTAYKNGQKIQDIATGKPSTPFDHGAGHVDPVSAL 604
Query: 610 NPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIE-- 667
NPGLVYDLTVDDYL FLCALNYT SQINSLAR+ FTCD+ K+YS+ D NYPSFAV E
Sbjct: 605 NPGLVYDLTVDDYLNFLCALNYTPSQINSLARKDFTCDSKKKYSVNDLNYPSFAVVFEGV 664
Query: 668 TAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSY-- 725
SGSSV+K+TR+LTNVG PGTYKV ITS T VKISVEP +LSFT AN+KKSY
Sbjct: 665 LGGGGSGSSVVKHTRTLTNVGSPGTYKVSITSET-KSVKISVEPESLSFTGANDKKSYTV 723
Query: 726 -TVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
T T S+ P++ +F +EWSDGK++VGSPIA SW
Sbjct: 724 TFTTTTSSAAPTSAEAFGRIEWSDGKHVVGSPIAFSW 760
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148299085|gb|ABQ58080.1| subtilisin-like protease [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/746 (77%), Positives = 656/746 (87%), Gaps = 3/746 (0%)
Query: 19 VSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFST 78
V+ + ++++TYI+H+AKS+MP SFE+H HWY+SSLKSVSDSAE+LY Y+NV+HGFS
Sbjct: 22 VATIGSSSNKKSTYIVHVAKSQMPESFENHKHWYDSSLKSVSDSAEMLYVYNNVVHGFSA 81
Query: 79 QLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVGVLD 138
+LT +EAESLE++ GILSVLPE+KYELHTTR+P FLGLD+SA+ FP S + S+VIVGVLD
Sbjct: 82 RLTVQEAESLERQSGILSVLPEMKYELHTTRTPSFLGLDRSADFFPESNAMSDVIVGVLD 141
Query: 139 TGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198
TGVWPESKSFDDTGLGPVP SWKG CE+GTNF++SNCNRKLIGARYF++GYE TLGP+D
Sbjct: 142 TGVWPESKSFDDTGLGPVPDSWKGECESGTNFSSSNCNRKLIGARYFSKGYETTLGPVDV 201
Query: 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCF 258
SKESKS RDDDGHGTHTA+TAAGS+V+GASLFGYA+GTARGMATRARVA YKVCW+GGCF
Sbjct: 202 SKESKSARDDDGHGTHTATTAAGSIVQGASLFGYASGTARGMATRARVAVYKVCWIGGCF 261
Query: 259 SSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS 318
SSDILAA+++AIDDNVNVLS+SLGGG SDYY+DSVAIGAFAAMEKGILVSCSAGNAGP
Sbjct: 262 SSDILAAMDKAIDDNVNVLSLSLGGGNSDYYRDSVAIGAFAAMEKGILVSCSAGNAGPGP 321
Query: 319 YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASN 378
YSLSNVAPWITTVGAGTLDRDFPA+VSLGNG+N+SGVSLYKGD K+LPFVYAGNASN
Sbjct: 322 YSLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNFSGVSLYKGDLSLSKMLPFVYAGNASN 381
Query: 379 ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438
TNGNLCM TLIPEKV GKIV+CDRG+N RVQKG+VVK AGG+GMVLANT +NG+ELVA
Sbjct: 382 TTNGNLCMTGTLIPEKVKGKIVLCDRGINPRVQKGSVVKEAGGVGMVLANTAANGDELVA 441
Query: 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITP 498
DAHLLPAT VGQ G+AIK YL SDP PT TILFEGTKVG++PSPVVAAFSSRGPNSIT
Sbjct: 442 DAHLLPATTVGQTTGEAIKKYLTSDPNPTATILFEGTKVGIKPSPVVAAFSSRGPNSITQ 501
Query: 499 ELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH 558
E+LKPD+IAPGVNILAGW+G VGPTGLA D+RRV FNIISGTSMSCPHVSGLAALLK AH
Sbjct: 502 EILKPDIIAPGVNILAGWTGGVGPTGLAEDTRRVGFNIISGTSMSCPHVSGLAALLKGAH 561
Query: 559 PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLT 618
P+WSPAAIRSALMTTAY YKNG LQD++TGK STPFDHGAGHV+PV+ALNPGLVYDL
Sbjct: 562 PDWSPAAIRSALMTTAYTVYKNGGALQDVSTGKPSTPFDHGAGHVDPVAALNPGLVYDLR 621
Query: 619 VDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAV---NIETAQSSSGS 675
DDYL FLCALNYT+ QINS+ARR + C+ SK+YS+ D NYPSFAV TA S S S
Sbjct: 622 ADDYLNFLCALNYTSIQINSIARRNYNCETSKKYSVTDLNYPSFAVVFLEQMTAGSGSSS 681
Query: 676 SVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMP 735
S +KYTR+LTNVGP GTYKV S+ VK+SVEP TL FT+ NE+KSYTVTFT S P
Sbjct: 682 SSVKYTRTLTNVGPAGTYKVSTVFSSSNSVKVSVEPETLVFTRVNEQKSYTVTFTAPSTP 741
Query: 736 SNTNSFAHLEWSDGKYIVGSPIAISW 761
S TN F +EWSDGK++VGSP+AISW
Sbjct: 742 STTNVFGRIEWSDGKHVVGSPVAISW 767
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476353|ref|XP_003608462.1| Subtilisin-like protease [Medicago truncatula] gi|355509517|gb|AES90659.1| Subtilisin-like protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/762 (75%), Positives = 668/762 (87%), Gaps = 12/762 (1%)
Query: 2 KTFKSLISLLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSD 61
++F + I L+L +G D S + ++TYI+HMAKSEMP SFEHHT WYESSL+SVSD
Sbjct: 7 RSFPTAI-LVLFMGLCDASSSL-----KSTYIVHMAKSEMPESFEHHTLWYESSLQSVSD 60
Query: 62 SAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSAN 121
SAE++YTY+N IHGFST+LT EEA LE + GIL+VLPE+KYELHTTR+P+FLGLDKSA+
Sbjct: 61 SAEMMYTYENAIHGFSTRLTPEEARLLESQTGILAVLPEVKYELHTTRTPQFLGLDKSAD 120
Query: 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIG 181
+FP S S +EV+VGVLDTGVWPESKSF+D G GP+P++WKGACE+GTNF A+NCN+KLIG
Sbjct: 121 MFPESSSGNEVVVGVLDTGVWPESKSFNDAGFGPIPTTWKGACESGTNFTAANCNKKLIG 180
Query: 182 ARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMA 241
AR+F++G EA LGPIDE+ ESKSPRDDDGHGTHT+STAAGSVV ASLFGYA+GTARGMA
Sbjct: 181 ARFFSKGVEAMLGPIDETTESKSPRDDDGHGTHTSSTAAGSVVPDASLFGYASGTARGMA 240
Query: 242 TRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAM 301
TRARVA YKVCW GGCFSSDILAAI++AI DNVNVLS+SLGGG SDY++DSVAIGAF+AM
Sbjct: 241 TRARVAVYKVCWKGGCFSSDILAAIDKAISDNVNVLSLSLGGGMSDYFRDSVAIGAFSAM 300
Query: 302 EKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGD 361
EKGILVSCSAGNAGPS+YSLSNVAPWITTVGAGTLDRDFPA VSLGNG NYSGVSLY+G+
Sbjct: 301 EKGILVSCSAGNAGPSAYSLSNVAPWITTVGAGTLDRDFPASVSLGNGLNYSGVSLYRGN 360
Query: 362 GLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGG 421
LP LP +YAGNA+NATNGNLCM TL PE VAGKIV+CDRG+NARVQKGAVVKAAGG
Sbjct: 361 ALPESPLPLIYAGNATNATNGNLCMTGTLSPELVAGKIVLCDRGMNARVQKGAVVKAAGG 420
Query: 422 LGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEP 481
LGMVL+NT +NGEELVAD HLLPATAVG++ G+AIK YL S+ KPTV I+F+GTKVGVEP
Sbjct: 421 LGMVLSNTAANGEELVADTHLLPATAVGEREGNAIKKYLFSEAKPTVKIVFQGTKVGVEP 480
Query: 482 SPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTS 541
SPVVAAFSSRGPNSITP++LKPD+IAPGVNILAGWS AVGPTGLA D RRV FNIISGTS
Sbjct: 481 SPVVAAFSSRGPNSITPQILKPDLIAPGVNILAGWSKAVGPTGLAVDERRVDFNIISGTS 540
Query: 542 MSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601
MSCPHVSGLAAL+K+AHP+WSPAA+RSALMTTAY++YKNG KLQD ATGK+STPFDHG+G
Sbjct: 541 MSCPHVSGLAALIKSAHPDWSPAAVRSALMTTAYIAYKNGNKLQDSATGKSSTPFDHGSG 600
Query: 602 HVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPS 661
HV+PV+ALNPGLVYDLT DDYLGFLCALNYTA+QI SLARRKF CDA K+YS++D NYPS
Sbjct: 601 HVDPVAALNPGLVYDLTADDYLGFLCALNYTATQITSLARRKFQCDAGKKYSVSDLNYPS 660
Query: 662 FAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANE 721
FAV +T G++V+K+TR LTNVGP GTYK +TS + VKI+VEP LSF +ANE
Sbjct: 661 FAVVFDTM---GGANVVKHTRILTNVGPAGTYKASVTSDS-KNVKITVEPEELSF-KANE 715
Query: 722 KKSYTVTFTVS-SMPSNTNSFAHLEWSDGKYIVGSPIAISWN 762
KKS+TVTFT S S P N F LEW++GK +VGSPI+ISW+
Sbjct: 716 KKSFTVTFTSSGSTPQKLNGFGRLEWTNGKNVVGSPISISWD 757
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563545|ref|XP_003550022.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/762 (75%), Positives = 665/762 (87%), Gaps = 10/762 (1%)
Query: 2 KTFKSLISLLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSD 61
K F + +S++L LG ++ + A Q ++TYI+H+AKSEMP SFEHH WYESSLK+VSD
Sbjct: 6 KPFLAFLSVVLFLGLYEAA-AEQTQTHKSTYIVHVAKSEMPESFEHHAVWYESSLKTVSD 64
Query: 62 SAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSAN 121
SAE++YTYDN IHG++T+LT EEA L+++ GIL+VLPE +YEL TTR+P FLGLDKSA+
Sbjct: 65 SAEMIYTYDNAIHGYATRLTAEEARLLQRQTGILAVLPETRYELFTTRTPLFLGLDKSAD 124
Query: 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIG 181
LFP S S S+VIVGVLDTGVWPESKSFDDTGLGPVPS+WKGACETGTNF ASNCNRKLIG
Sbjct: 125 LFPESSSGSDVIVGVLDTGVWPESKSFDDTGLGPVPSTWKGACETGTNFTASNCNRKLIG 184
Query: 182 ARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMA 241
AR+FA+G EA LGPI+E++ES+S RDDDGHGTHT+STAAGSVV GASL GYA+GTARGMA
Sbjct: 185 ARFFAKGVEAMLGPINETEESRSARDDDGHGTHTSSTAAGSVVSGASLLGYASGTARGMA 244
Query: 242 TRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAM 301
TRARVAAYKVCW GGCFSSDILAAIE+AI DNVNVLS+SLGGG SDYY+DSVAIGAF+AM
Sbjct: 245 TRARVAAYKVCWKGGCFSSDILAAIERAILDNVNVLSLSLGGGISDYYRDSVAIGAFSAM 304
Query: 302 EKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGD 361
EKGILVSCSAGN+GP YSLSNVAPWITTVGAGTLDRDFPA+V+LGNG N+SGVSLY+G+
Sbjct: 305 EKGILVSCSAGNSGPGPYSLSNVAPWITTVGAGTLDRDFPAYVALGNGLNFSGVSLYRGN 364
Query: 362 GLPGKLLPFVYAGNASN-ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAG 420
LP LP VYAGN SN A NGNLC+ TL PEKVAGKIV+CDRG+ ARVQKG+VVK+AG
Sbjct: 365 ALPDSSLPLVYAGNVSNGAMNGNLCITGTLSPEKVAGKIVLCDRGLTARVQKGSVVKSAG 424
Query: 421 GLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVE 480
LGMVL+NT +NGEELVADAHLLPATAVGQK GDAIK YLVSD KPTV I FEGTKVG++
Sbjct: 425 ALGMVLSNTAANGEELVADAHLLPATAVGQKAGDAIKKYLVSDAKPTVKIFFEGTKVGIQ 484
Query: 481 PSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
PSPVVAAFSSRGPNSITP++LKPD+IAPGVNILAGWS AVGPTGL D+RRV FNIISGT
Sbjct: 485 PSPVVAAFSSRGPNSITPQILKPDLIAPGVNILAGWSKAVGPTGLPVDNRRVDFNIISGT 544
Query: 541 SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGA 600
SMSCPHVSGLAAL+K+AHP+WSPAA+RSALMTTAY YK G+KLQD ATGK STPFDHG+
Sbjct: 545 SMSCPHVSGLAALIKSAHPDWSPAAVRSALMTTAYTVYKTGEKLQDSATGKPSTPFDHGS 604
Query: 601 GHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYP 660
GHV+PV+ALNPGLVYDLTVDDYLGFLCALNY+A++I++LA+RKF CDA K+YS+ D NYP
Sbjct: 605 GHVDPVAALNPGLVYDLTVDDYLGFLCALNYSAAEISTLAKRKFQCDAGKQYSVTDLNYP 664
Query: 661 SFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQAN 720
SFAV E S SV+K+TR+LTNVGP GTYK +TS T VKISVEP LSF + N
Sbjct: 665 SFAVLFE-----SSGSVVKHTRTLTNVGPAGTYKASVTSDTA-SVKISVEPQVLSFKE-N 717
Query: 721 EKKSYTVTFTVSSMPSNT-NSFAHLEWSDGKYIVGSPIAISW 761
EKK++TVTF+ S P +T N+F +EWSDGK++VGSPI+++W
Sbjct: 718 EKKTFTVTFSSSGSPQHTENAFGRVEWSDGKHLVGSPISVNW 759
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18425181|ref|NP_569048.1| subtilisin-like protease [Arabidopsis thaliana] gi|75099392|sp|O65351.1|SUBL_ARATH RecName: Full=Subtilisin-like protease; AltName: Full=Cucumisin-like serine protease; Flags: Precursor gi|13430746|gb|AAK25995.1|AF360285_1 putative subtilisin serine protease ARA12 [Arabidopsis thaliana] gi|3176874|gb|AAC18851.1| cucumisin-like serine protease [Arabidopsis thaliana] gi|9758435|dbj|BAB09021.1| cucumisin-like serine protease [Arabidopsis thaliana] gi|23296832|gb|AAN13181.1| putative subtilisin serine protease ARA12 [Arabidopsis thaliana] gi|332010949|gb|AED98332.1| subtilisin-like protease [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/754 (75%), Positives = 659/754 (87%), Gaps = 12/754 (1%)
Query: 10 LLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTY 69
LLL LGF VS ++ + + TYI+HMAKS+MP+SF+ H++WY+SSL+S+SDSAE+LYTY
Sbjct: 13 LLLCLGFCHVSSSSSD---QGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAELLYTY 69
Query: 70 DNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDK-SANLFPTSGS 128
+N IHGFST+LT+EEA+SL +PG++SVLPE +YELHTTR+P FLGLD+ +A+LFP +GS
Sbjct: 70 ENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGS 129
Query: 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188
S+V+VGVLDTGVWPESKS+ D G GP+PSSWKG CE GTNF AS CNRKLIGAR+FARG
Sbjct: 130 YSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARG 189
Query: 189 YEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAA 248
YE+T+GPIDESKES+SPRDDDGHGTHT+STAAGSVVEGASL GYA+GTARGMA RARVA
Sbjct: 190 YESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAV 249
Query: 249 YKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVS 308
YKVCW+GGCFSSDILAAI++AI DNVNVLSMSLGGG SDYY+D VAIGAFAAME+GILVS
Sbjct: 250 YKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVS 309
Query: 309 CSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLL 368
CSAGNAGPSS SLSNVAPWITTVGAGTLDRDFPA LGNG+N++GVSL+KG+ LP KLL
Sbjct: 310 CSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLL 369
Query: 369 PFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLAN 428
PF+YAGNASNATNGNLCM TLIPEKV GKIVMCDRG+NARVQKG VVKAAGG+GM+LAN
Sbjct: 370 PFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILAN 429
Query: 429 TESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAF 488
T +NGEELVADAHLLPAT VG+K GD I+ Y+ +DP PT +I GT VGV+PSPVVAAF
Sbjct: 430 TAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAF 489
Query: 489 SSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVS 548
SSRGPNSITP +LKPD+IAPGVNILA W+GA GPTGLA+DSRRV FNIISGTSMSCPHVS
Sbjct: 490 SSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVS 549
Query: 549 GLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSA 608
GLAALLK+ HPEWSPAAIRSALMTTAY +YK+G+ L DIATGK STPFDHGAGHV+P +A
Sbjct: 550 GLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTA 609
Query: 609 LNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIET 668
NPGL+YDLT +DYLGFLCALNYT+ QI S++RR +TCD SK YS+AD NYPSFAVN++
Sbjct: 610 TNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD- 668
Query: 669 AQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVT 728
G KYTR++T+VG GTY V +TS T GVKISVEPA L+F +ANEKKSYTVT
Sbjct: 669 -----GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVT 722
Query: 729 FTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
FTV SS PS +NSF +EWSDGK++VGSP+AISW
Sbjct: 723 FTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511935|ref|XP_003524677.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/764 (75%), Positives = 663/764 (86%), Gaps = 13/764 (1%)
Query: 1 MKTF-KSLISLLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSV 59
M +F K +++L V+ F + AA+ +++TYI+H+AKSEMP SFEHH WYESSLK+V
Sbjct: 1 MSSFRKPFVAILWVVLFLGLHEAAE--PEKSTYIVHVAKSEMPESFEHHALWYESSLKTV 58
Query: 60 SDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKS 119
SDSAEI+YTYDN IHG++T+LT EEA LE + GIL+VLPE +YELHTTR+P FLGLDKS
Sbjct: 59 SDSAEIMYTYDNAIHGYATRLTAEEARLLETQAGILAVLPETRYELHTTRTPMFLGLDKS 118
Query: 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKL 179
A++FP S S S+VI+GVLDTGVWPESKSFDDTGLGPVPS+WKGACETGTNF ASNCNRKL
Sbjct: 119 ADMFPESSSGSDVIIGVLDTGVWPESKSFDDTGLGPVPSTWKGACETGTNFTASNCNRKL 178
Query: 180 IGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARG 239
IGAR+F++G EA LGPI+E++ES+S RDDDGHGTHTASTAAGSVV ASLFGYA+GTARG
Sbjct: 179 IGARFFSKGVEAILGPINETEESRSARDDDGHGTHTASTAAGSVVSDASLFGYASGTARG 238
Query: 240 MATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFA 299
MATRARVAAYKVCW GGCFSSDILAAIE+AI DNVNVLS+SLGGG SDYY+DSVAIGAF+
Sbjct: 239 MATRARVAAYKVCWKGGCFSSDILAAIERAILDNVNVLSLSLGGGMSDYYRDSVAIGAFS 298
Query: 300 AMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYK 359
AME GILVSCSAGNAGPS YSLSNVAPWITTVGAGTLDRDFPA+V+LGNG N+SGVSLY+
Sbjct: 299 AMENGILVSCSAGNAGPSPYSLSNVAPWITTVGAGTLDRDFPAYVALGNGLNFSGVSLYR 358
Query: 360 GDGLPGKLLPFVYAGNASN-ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKA 418
G+ +P LPFVYAGN SN A NGNLC+ TL PEKVAGKIV+CDRG+ ARVQKG+VVK+
Sbjct: 359 GNAVPDSPLPFVYAGNVSNGAMNGNLCITGTLSPEKVAGKIVLCDRGLTARVQKGSVVKS 418
Query: 419 AGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVG 478
AG LGMVL+NT +NGEELVADAHLLPATAVGQK GDAIK YL SD KPTV ILFEGTK+G
Sbjct: 419 AGALGMVLSNTAANGEELVADAHLLPATAVGQKAGDAIKKYLFSDAKPTVKILFEGTKLG 478
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
++PSPVVAAFSSRGPNSITP++LKPD+IAPGVNILAGWS AVGPTGL D+RRV FNIIS
Sbjct: 479 IQPSPVVAAFSSRGPNSITPQILKPDLIAPGVNILAGWSKAVGPTGLPVDNRRVDFNIIS 538
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDH 598
GTSMSCPHVSGLAAL+K+AHP+WSPAA+RSALMTTAY YK G+KLQD ATGK STPFDH
Sbjct: 539 GTSMSCPHVSGLAALIKSAHPDWSPAAVRSALMTTAYTVYKTGEKLQDSATGKPSTPFDH 598
Query: 599 GAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFN 658
G+GHV+PV+ALNPGLVYDLTVDDYLGFLCALNY+AS+IN+LA+RKF CDA K+YS+ D N
Sbjct: 599 GSGHVDPVAALNPGLVYDLTVDDYLGFLCALNYSASEINTLAKRKFQCDAGKQYSVTDLN 658
Query: 659 YPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQ 718
YPSFAV E+ V+K+TR+LTNVGP GTYK +TS VKISVEP LSF +
Sbjct: 659 YPSFAVLFESG------GVVKHTRTLTNVGPAGTYKASVTSDMA-SVKISVEPQVLSFKE 711
Query: 719 ANEKKSYTVTFTVSSMPSN-TNSFAHLEWSDGKYIVGSPIAISW 761
NEKKS+TVTF+ S P N+F +EWSDGK++VG+PI+I+W
Sbjct: 712 -NEKKSFTVTFSSSGSPQQRVNAFGRVEWSDGKHVVGTPISINW 754
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.973 | 0.980 | 0.722 | 2.4e-298 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.967 | 0.964 | 0.616 | 5.8e-256 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.988 | 0.984 | 0.617 | 6.6e-255 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.976 | 0.958 | 0.533 | 3.4e-212 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.944 | 0.954 | 0.533 | 1.8e-206 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.979 | 0.956 | 0.496 | 4.2e-198 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.973 | 0.957 | 0.494 | 2.4e-195 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.964 | 0.945 | 0.488 | 2e-191 | |
| UNIPROTKB|Q69P78 | 770 | OJ1344_B01.33 "Putative serine | 0.985 | 0.975 | 0.503 | 5.3e-191 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.977 | 0.975 | 0.476 | 2.1e-187 |
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2864 (1013.2 bits), Expect = 2.4e-298, P = 2.4e-298
Identities = 545/754 (72%), Positives = 628/754 (83%)
Query: 10 LLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTY 69
LLL LGF VS + + DQ TYI+HMAKS+MP+SF+ H++WY+SSL+S+SDSAE+LYTY
Sbjct: 13 LLLCLGFCHVS--SSSSDQ-GTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAELLYTY 69
Query: 70 DNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDK-SANLFPTSGS 128
+N IHGFST+LT+EEA+SL +PG++SVLPE +YELHTTR+P FLGLD+ +A+LFP +GS
Sbjct: 70 ENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGS 129
Query: 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188
S+V+VGVLDTGVWPESKS+ D G GP+PSSWKG CE GTNF AS CNRKLIGAR+FARG
Sbjct: 130 YSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARG 189
Query: 189 YEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXX 248
YE+T+GPIDESKES+SPRDDDGHGTHT+STAAGSVVEGASL GY
Sbjct: 190 YESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAV 249
Query: 249 YKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVS 308
YKVCW+GGCFSSDILAAI++AI DNVNVLSMSLGGG SDYY+D VAIGAFAAME+GILVS
Sbjct: 250 YKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVS 309
Query: 309 CSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLL 368
CSAGNAGPSS SLSNVAPWITTVGAGTLDRDFPA LGNG+N++GVSL+KG+ LP KLL
Sbjct: 310 CSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLL 369
Query: 369 PFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXXXXXXXXXN 428
PF+YAGNASNATNGNLCM TLIPEKV GKIVMCDRG+NAR N
Sbjct: 370 PFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILAN 429
Query: 429 TESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAF 488
T +NGEELVADAHLLPAT VG+K GD I+ Y+ +DP PT +I GT VGV+PSPVVAAF
Sbjct: 430 TAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAF 489
Query: 489 SSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVS 548
SSRGPNSITP +LKPD+IAPGVNILA W+GA GPTGLA+DSRRV FNIISGTSMSCPHVS
Sbjct: 490 SSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVS 549
Query: 549 GLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSA 608
GLAALLK+ HPEWSPAAIRSALMTTAY +YK+G+ L DIATGK STPFDHGAGHV+P +A
Sbjct: 550 GLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTA 609
Query: 609 LNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIET 668
NPGL+YDLT +DYLGFLCALNYT+ QI S++RR +TCD SK YS+AD NYPSFAVN++
Sbjct: 610 TNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD- 668
Query: 669 AQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVT 728
G KYTR++T+VG GTY V +TS T GVKISVEPA L+F +ANEKKSYTVT
Sbjct: 669 -----GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVT 722
Query: 729 FTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
FTV SS PS +NSF +EWSDGK++VGSP+AISW
Sbjct: 723 FTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756
|
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| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2464 (872.4 bits), Expect = 5.8e-256, P = 5.8e-256
Identities = 459/744 (61%), Positives = 570/744 (76%)
Query: 20 SVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQ 79
+ AA +R TYI+HM++S P F H WY +SL+SVSD+A +LYTYD ++HG+S +
Sbjct: 25 TAAAAVGGERRTYIVHMSRSAKPNDFVEHGEWYAASLQSVSDAATVLYTYDTIVHGYSAR 84
Query: 80 LTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVGVLDT 139
LTR EAE+LE +PG+L V PE++YELHTTR+PEFLGLD++ LFP S + S+VIVGVLDT
Sbjct: 85 LTRAEAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFPQSNTGSDVIVGVLDT 144
Query: 140 GVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199
GVWPE S+DD GLGPVP+ WKG CE G +FNAS CN+KLIGAR+F GYEA GP+D S
Sbjct: 145 GVWPERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARFFLTGYEAAKGPVDTS 204
Query: 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFS 259
KES+SPRD+DGHGTHT+STAAGS V GA L GY YKVCWVGGCFS
Sbjct: 205 KESRSPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVATYKVCWVGGCFS 264
Query: 260 SDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY 319
SDIL A+E A++D V+VLS+SLGGGT+DYY+DS+A+GA++AME+GI VSCSAGNAGP S
Sbjct: 265 SDILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVSCSAGNAGPGSA 324
Query: 320 SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNA 379
+LSN APWITTVGAGTLDRDFPA V LGNG+NYSGVSLY G LP +PF+YAGNASN+
Sbjct: 325 TLSNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQLPTTPVPFIYAGNASNS 384
Query: 380 TNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXXXXXXXXXNTESNGEELVAD 439
+ G LCM +LIPEKVAGKIV+CDRG NAR NT +NGEELVAD
Sbjct: 385 SMGALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGAGMVLANTAANGEELVAD 444
Query: 440 AHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499
AH+LP VGQK GD +++Y +SDP PT +I+F GT+VG++PSPVVAAFSSRGPN++TP
Sbjct: 445 AHVLPGAGVGQKAGDTMRAYALSDPNPTASIVFAGTQVGIQPSPVVAAFSSRGPNTVTPG 504
Query: 500 LLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP 559
+LKPD+IAPGVNILA WSG+VGP+GLA DSRRV FNIISGTSMSCPHVSGLAALL+AAH
Sbjct: 505 ILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRVGFNIISGTSMSCPHVSGLAALLRAAHQ 564
Query: 560 EWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTV 619
+WSPAAIRSALMTT+Y Y NG + D+ATG +TP D GAGHV+P A++PGLVYD+
Sbjct: 565 DWSPAAIRSALMTTSYNGYPNGNGILDVATGLPATPLDVGAGHVDPSKAVDPGLVYDIAA 624
Query: 620 DDYLGFLCALNYTASQINSLARRKF-TCDASKRYSLADFNYPSFAVNIETAQSSSGSSVL 678
DY+ FLCA++Y QI +L + C ++ Y++ NYPSF+V T ++ G+
Sbjct: 625 ADYVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYPSFSV---TFPATGGTE-- 679
Query: 679 KYTRSLTNVGPPGTYKVFITSSTGPG-VKISVEPATLSFTQANEKKSYTVTFTVSSMPSN 737
K+TR++TNVG PGTYKV +++ G V +SVEP+TL+FT++ EK+SYTV+F ++MPS
Sbjct: 680 KHTRTVTNVGQPGTYKVTASAAAGSTPVTVSVEPSTLTFTKSGEKQSYTVSFAAAAMPSG 739
Query: 738 TNSFAHLEWSDGKYIVGSPIAISW 761
TN F L WS ++V SPIA++W
Sbjct: 740 TNGFGRLVWSSDHHVVSSPIAVTW 763
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2454 (868.9 bits), Expect = 6.6e-255, P = 6.6e-255
Identities = 473/766 (61%), Positives = 572/766 (74%)
Query: 7 LISLLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASF-EHHTHWYESSLKSVSDSAEI 65
++ LLLV ++ ++RATYI+HMAKS MPA + + H WY +SL+SVS + ++
Sbjct: 1 MMRLLLVAVAVAMAAVVVAAEERATYIVHMAKSAMPAEYGDDHGEWYGASLRSVSGAGKM 60
Query: 66 LYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPT 125
LY YD V+HGFS +LT EA + G+L+V PE +YELHTTR+PEFLG+ + LFP
Sbjct: 61 LYAYDTVLHGFSARLTAREARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAGNDGLFPQ 120
Query: 126 SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYF 185
SG+A +V+VGVLDTGVWPES+S+DD GLG VPS WKG C GT FN+S CNRKL+GAR+F
Sbjct: 121 SGTAGDVVVGVLDTGVWPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRKLVGARFF 180
Query: 186 ARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXX 245
RGYEA +GP+D ++ES+SPRDDDGHGTHT+STAAG+ V GASL G+
Sbjct: 181 NRGYEAAMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRAR 240
Query: 246 XXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGI 305
YKVCW+GGCFSSDILA ++ A+ D VLS+SLGGG +DY +DSVAIGAFAAME+ +
Sbjct: 241 VAVYKVCWLGGCFSSDILAGMDAAVADGCGVLSLSLGGGAADYARDSVAIGAFAAMEQNV 300
Query: 306 LVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPG 365
LVSCSAGNAGP + +LSNVAPWITTVGAGTLDRDFPA+VSLGNG+NY+GVSLY G LP
Sbjct: 301 LVSCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPS 360
Query: 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXXXXXXX 425
LP VYA NASN+T GNLCM TL PEKVAGKIV+CDRGV+AR
Sbjct: 361 TPLPIVYAANASNSTAGNLCMPGTLTPEKVAGKIVVCDRGVSARVQKGFVVRDAGGAGMV 420
Query: 426 XXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVV 485
NT +NGEELVADAHLLPA VG K G AIK+Y+ SDP PT TI+ GT+V V PSPVV
Sbjct: 421 LSNTATNGEELVADAHLLPAAGVGAKEGAAIKAYVASDPSPTATIVVAGTQVDVRPSPVV 480
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
AAFSSRGPN +TPE+LKPD+IAPGVNILA W+G GPTG+A D+RRV+FNIISGTSMSCP
Sbjct: 481 AAFSSRGPNMLTPEILKPDIIAPGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCP 540
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYK---NGQKLQDIATGKASTPFDHGAGH 602
HVSGLAALL++AHPEWSPAA+RSALMTTAY +Y + L D ATG +TPFD+GAGH
Sbjct: 541 HVSGLAALLRSAHPEWSPAAVRSALMTTAYSTYAGAGDANPLLDAATGAPATPFDYGAGH 600
Query: 603 VNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRK-FTCDASKRYSLADFNYPS 661
V+P SA++PGLVYDL DY+ FLCALNYT++ I ++AR K + C K YS+ + NYPS
Sbjct: 601 VDPASAVDPGLVYDLGTADYVDFLCALNYTSTMIAAVARSKSYGCTEGKAYSVYNLNYPS 660
Query: 662 FAVNIETAQS----SSGSSVLKYT--RSLTNVGPPGTYKVFITSSTGPGVKISVEPATLS 715
FAV TA S SSG++ T R+LTNVG GTYKV +++ PGV ++VEP L+
Sbjct: 661 FAVAYSTASSQAAESSGAAATTVTHRRTLTNVGAAGTYKV--SAAAMPGVAVAVEPTELA 718
Query: 716 FTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
FT A EKKSYTV+FT S PS T F L WSDGK+ V SP+A +W
Sbjct: 719 FTSAGEKKSYTVSFTAKSQPSGTAGFGRLVWSDGKHSVASPMAFTW 764
|
|
| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2051 (727.0 bits), Expect = 3.4e-212, P = 3.4e-212
Identities = 411/770 (53%), Positives = 522/770 (67%)
Query: 9 SLLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDS------ 62
+L LV S++A P + TYI+ MA SEMP+SF+ + WY S++KSVS S
Sbjct: 12 ALCLVTVLLQASLSACAPTPK-TYIVQMAASEMPSSFDFYHEWYASTVKSVSSSQLEDEE 70
Query: 63 ----AEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGL-- 116
I+Y Y+ HGF+ QL EEAE + + G+L+V+PE +LHTTRSP+FLG+
Sbjct: 71 DDASTRIIYNYETAFHGFAAQLDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGP 130
Query: 117 DKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCN 176
+ S ++ S + +V+VGVLDTG+WPES SF D GLGPVP+ WKG C+TG F +NCN
Sbjct: 131 EVSNRIWSDSLADHDVVVGVLDTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTANCN 190
Query: 177 RKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXX 236
RK++GAR F GYEA+ GPI+E+ E KSPRD DGHGTHTA+TAAGS V+ A+L+GY
Sbjct: 191 RKIVGARIFYNGYEASSGPINETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGV 250
Query: 237 XXXXXXXXXXXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIG 296
YKVCW GGCFSSDILAA+++A+ D V+VLS+SLGGG S YY DS++I
Sbjct: 251 ARGMAPRARVAAYKVCWAGGCFSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIA 310
Query: 297 AFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVS 356
+F AM+ G+ V+CSAGNAGP SL+N++PWITTVGA T+DRDFPA V+LGNG N +GVS
Sbjct: 311 SFGAMQMGVFVACSAGNAGPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANITGVS 370
Query: 357 LYKG-DGL-PGKLLPFVY-AGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXX 413
LYKG L P + P VY GN+S +LC+ TL P V+GKIV+CDRG++ R
Sbjct: 371 LYKGLRNLSPQEQYPVVYLGGNSSMPDPRSLCLEGTLQPHDVSGKIVICDRGISPRVQKG 430
Query: 414 XXXXXXXXXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFE 473
NT +NGEELVAD+HLLPA AVG+ G A KSY S PKPT T+ F
Sbjct: 431 QVVKEAGGIGMILANTAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTATLSFG 490
Query: 474 GTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVS 533
GTK+G+ PSPVVAAFSSRGPN +T E+LKPD++APGVNILA WSG P+ L++DSRRV
Sbjct: 491 GTKLGIRPSPVVAAFSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSRRVG 550
Query: 534 FNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAS 593
FNI+SGTSMSCPHV+G+AAL+KA+HP+WSPA I+SALMTTAYV + ++D ATGKAS
Sbjct: 551 FNILSGTSMSCPHVAGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATGKAS 610
Query: 594 TPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRK-FTCDASKRY 652
TPF+HGAGH++PV AL PGLVYD+ DYL FLC + T Q+ + + TC +
Sbjct: 611 TPFEHGAGHIHPVRALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFS- 669
Query: 653 SLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPG-TYKVFITSSTGPGVKISVEP 711
S +D NYP A+++ A S L R++TNVGPP TY V +T G V VEP
Sbjct: 670 SASDLNYP--AISVVFADQPS--KALTVRRTVTNVGPPSSTYHVKVTKFKGADV--IVEP 723
Query: 712 ATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
TL F N+K SY VT T + F L WSDG +IV SP+ ++W
Sbjct: 724 NTLHFVSTNQKLSYKVTVTTKAA-QKAPEFGALSWSDGVHIVRSPVVLTW 772
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1997 (708.0 bits), Expect = 1.8e-206, P = 1.8e-206
Identities = 395/740 (53%), Positives = 506/740 (68%)
Query: 29 RATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESL 88
+ TYII + S+ P SF H WY S L S S +LYTY HGFS L EA+SL
Sbjct: 27 KKTYIIRVNHSDKPESFLTHHDWYTSQLNSESS---LLYTYTTSFHGFSAYLDSTEADSL 83
Query: 89 -EQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKS 147
IL + + Y LHTTR+PEFLGL+ + S++ VI+GVLDTGVWPES+S
Sbjct: 84 LSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFGVHDLGSSSNGVIIGVLDTGVWPESRS 143
Query: 148 FDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE-ATLGPIDESKESKSPR 206
FDDT + +PS WKG CE+G++F++ CN+KLIGAR F++G++ A+ G +ES SPR
Sbjct: 144 FDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIGARSFSKGFQMASGGGFSSKRESVSPR 203
Query: 207 DDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXXYKVCWVGGCFSSDILAAI 266
D DGHGTHT++TAAGS V AS GY YKVCW GCF SDILAA+
Sbjct: 204 DVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMATRARVATYKVCWSTGCFGSDILAAM 263
Query: 267 EQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAP 326
++AI D V+VLS+SLGGG++ YY+D++AIGAF+AME+G+ VSCSAGN+GP+ S++NVAP
Sbjct: 264 DRAILDGVDVLSLSLGGGSAPYYRDTIAIGAFSAMERGVFVSCSAGNSGPTRASVANVAP 323
Query: 327 WITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCM 386
W+ TVGAGTLDRDFPAF +LGNG+ +GVSLY G G+ K L VY N N+++ NLC+
Sbjct: 324 WVMTVGAGTLDRDFPAFANLGNGKRLTGVSLYSGVGMGTKPLELVY--NKGNSSSSNLCL 381
Query: 387 MDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXXXXXXXXXNTESNGEELVADAHLLPAT 446
+L V GKIV+CDRGVNAR NT ++GEELVAD+HLLPA
Sbjct: 382 PGSLDSSIVRGKIVVCDRGVNARVEKGAVVRDAGGLGMIMANTAASGEELVADSHLLPAI 441
Query: 447 AVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506
AVG+K GD ++ Y+ SD KPT ++F+GT + V+PSPVVAAFSSRGPN++TPE+LKPD+I
Sbjct: 442 AVGKKTGDLLREYVKSDSKPTALLVFKGTVLDVKPSPVVAAFSSRGPNTVTPEILKPDVI 501
Query: 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAI 566
PGVNILAGWS A+GPTGL DSRR FNI+SGTSMSCPH+SGLA LLKAAHPEWSP+AI
Sbjct: 502 GPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGTSMSCPHISGLAGLLKAAHPEWSPSAI 561
Query: 567 RSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFL 626
+SALMTTAYV L D A S P+ HG+GHV+P AL+PGLVYD++ ++Y+ FL
Sbjct: 562 KSALMTTAYVLDNTNAPLHDAADNSLSNPYAHGSGHVDPQKALSPGLVYDISTEEYIRFL 621
Query: 627 CALNYTASQINSLARRKFTCDASKRYS-LADFNYPSFAVNIETAQSSSGSSVLKYTRSLT 685
C+L+YT I ++ +R + + SK++S NYPSF+V G V++YTR +T
Sbjct: 622 CSLDYTVDHIVAIVKRP-SVNCSKKFSDPGQLNYPSFSVLF------GGKRVVRYTREVT 674
Query: 686 NVGPPGT-YKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNS--FA 742
NVG + YKV + + P V ISV+P+ LSF EKK YTVTF S TN F
Sbjct: 675 NVGAASSVYKVTVNGA--PSVGISVKPSKLSFKSVGEKKRYTVTFVSKKGVSMTNKAEFG 732
Query: 743 HLEWSDGKYIVGSPIAISWN 762
+ WS+ ++ V SP+A SWN
Sbjct: 733 SITWSNPQHEVRSPVAFSWN 752
|
|
| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
Identities = 383/771 (49%), Positives = 505/771 (65%)
Query: 10 LLLVLGFFDVSVAAQNPDQ---RATYIIHMAKSEMPASFEHHTHWYESSLKSVSD--SAE 64
L ++L + + A+ Q + TY+IHM KS MP + +H WY S + SV+ S E
Sbjct: 12 LFIILSINLIFLQAETTTQISTKKTYVIHMDKSAMPLPYTNHLQWYSSKINSVTQHKSQE 71
Query: 65 -------ILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLD 117
ILYTY HG + QLT+EEAE LE+ G+++V+PE +YELHTTRSP FLGL+
Sbjct: 72 EEGNNNRILYTYQTAFHGLAAQLTQEEAERLEEEDGVVAVIPETRYELHTTRSPTFLGLE 131
Query: 118 K--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNC 175
+ S ++ + +V+VGVLDTG+WPES+SF+DTG+ PVP++W+GACETG F NC
Sbjct: 132 RQESERVWAERVTDHDVVVGVLDTGIWPESESFNDTGMSPVPATWRGACETGKRFLKRNC 191
Query: 176 NRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXX 235
NRK++GAR F RGYEA G IDE E KSPRD DGHGTHTA+T AGS V+GA+LFG+
Sbjct: 192 NRKIVGARVFYRGYEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGFAYG 251
Query: 236 XXXXXXXXXXXXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAI 295
YKVCWVGGCFSSDIL+A++QA+ D V VLS+SLGGG S Y +DS++I
Sbjct: 252 TARGMAQKARVAAYKVCWVGGCFSSDILSAVDQAVADGVQVLSISLGGGVSTYSRDSLSI 311
Query: 296 GAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355
F AME G+ VSCSAGN GP SL+NV+PWITTVGA T+DRDFPA V +G + + GV
Sbjct: 312 ATFGAMEMGVFVSCSAGNGGPDPISLTNVSPWITTVGASTMDRDFPATVKIGTMRTFKGV 371
Query: 356 SLYKGDG-LP-GKLLPFVYAG-NASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXX 412
SLYKG LP K P VY G NAS+ + C+ L VAGKIV+CDRGV R
Sbjct: 372 SLYKGRTVLPKNKQYPLVYLGRNASSPDPTSFCLDGALDRRHVAGKIVICDRGVTPRVQK 431
Query: 413 XXXXXXXXXXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILF 472
NT +NGEELVAD+H+LPA AVG+K G IK Y ++ K T ++
Sbjct: 432 GQVVKRAGGIGMVLTNTATNGEELVADSHMLPAVAVGEKEGKLIKQYAMTSKKATASLEI 491
Query: 473 EGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRV 532
GT++G++PSPVVAAFSSRGPN ++ E+LKPD++APGVNILA W+G + P+ L++D RRV
Sbjct: 492 LGTRIGIKPSPVVAAFSSRGPNFLSLEILKPDLLAPGVNILAAWTGDMAPSSLSSDPRRV 551
Query: 533 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKA 592
FNI+SGTSMSCPHVSG+AAL+K+ HP+WSPAAI+SALMTTAYV + L D +
Sbjct: 552 KFNILSGTSMSCPHVSGVAALIKSRHPDWSPAAIKSALMTTAYVHDNMFKPLTDASGAAP 611
Query: 593 STPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKF-TCDASKR 651
S+P+DHGAGH++P+ A +PGLVYD+ +Y FLC + + SQ+ + TC +
Sbjct: 612 SSPYDHGAGHIDPLRATDPGLVYDIGPQEYFEFLCTQDLSPSQLKVFTKHSNRTCKHTLA 671
Query: 652 YSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPP-GTYKVFITSSTGPGVKISVE 710
+ + NYP+ + ++ + R++TNVGP +YKV + S G ++V+
Sbjct: 672 KNPGNLNYPAISALFP---ENTHVKAMTLRRTVTNVGPHISSYKVSV--SPFKGASVTVQ 726
Query: 711 PATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
P TL+FT ++K SYTVTF + F L W + V SP+ I+W
Sbjct: 727 PKTLNFTSKHQKLSYTVTFR-TRFRMKRPEFGGLVWKSTTHKVRSPVIITW 776
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
Identities = 380/769 (49%), Positives = 502/769 (65%)
Query: 11 LLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSA-EILYTY 69
LL L S ++ N TYI+H+ P+ F H HWY SSL S++ S I++TY
Sbjct: 10 LLTLSSPSSSASSSNS---LTYIVHVDHEAKPSIFPTHFHWYTSSLASLTSSPPSIIHTY 66
Query: 70 DNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGL---DKSANLFPTS 126
D V HGFS +LT ++A L P ++SV+PE LHTTRSPEFLGL DK A L S
Sbjct: 67 DTVFHGFSARLTSQDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDK-AGLLEES 125
Query: 127 GSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFA 186
S++++GV+DTGVWPE SFDD GLGPVP WKG C +F S CNRKL+GAR+F
Sbjct: 126 DFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGARFFC 185
Query: 187 RGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXX 246
GYEAT G ++E+ E +SPRD DGHGTHTAS +AG V AS GY
Sbjct: 186 GGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAPKARL 245
Query: 247 XXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGIL 306
YKVCW GC+ SDILAA + A+ D V+V+S+S+GG YY D++AIGAF A+++GI
Sbjct: 246 AAYKVCWNSGCYDSDILAAFDTAVADGVDVISLSVGGVVVPYYLDAIAIGAFGAIDRGIF 305
Query: 307 VSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGL-PG 365
VS SAGN GP + +++NVAPW+TTVGAGT+DRDFPA V LGNG+ SGVS+Y G GL PG
Sbjct: 306 VSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGGPGLDPG 365
Query: 366 KLLPFVYAGN--ASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXXXXX 423
++ P VY G+ + + +LC+ +L P V GKIV+CDRG+N+R
Sbjct: 366 RMYPLVYGGSLLGGDGYSSSLCLEGSLDPNLVKGKIVLCDRGINSRATKGEIVRKNGGLG 425
Query: 424 XXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPK------PTVTILFEGTKV 477
N +GE LVAD H+LPAT+VG GD I+ Y+ K PT TI+F+GT++
Sbjct: 426 MIIANGVFDGEGLVADCHVLPATSVGASGGDEIRRYISESSKSRSSKHPTATIVFKGTRL 485
Query: 478 GVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNII 537
G+ P+PVVA+FS+RGPN TPE+LKPD+IAPG+NILA W +GP+G+ +D+RR FNI+
Sbjct: 486 GIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRIGPSGVTSDNRRTEFNIL 545
Query: 538 SGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFD 597
SGTSM+CPHVSGLAALLKAAHP+WSPAAIRSAL+TTAY +G+ + D +TG S+ D
Sbjct: 546 SGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNSGEPMMDESTGNTSSVMD 605
Query: 598 HGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYS-LAD 656
+G+GHV+P A++PGLVYD+T DY+ FLC NYT + I ++ RR+ CD ++R + +
Sbjct: 606 YGSGHVHPTKAMDPGLVYDITSYDYINFLCNSNYTRTNIVTITRRQADCDGARRAGHVGN 665
Query: 657 FNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGT-YKVFITSSTGPGVKISVEPATLS 715
NYPSF+V + S S+ + R++TNVG + Y++ I G ++VEP LS
Sbjct: 666 LNYPSFSVVFQQYGESKMST--HFIRTVTNVGDSDSVYEIKIRPPRG--TTVTVEPEKLS 721
Query: 716 FTQANEKKSYTV---TFTVSSMPSNTN-SFAHLEWSDGKYIVGSPIAIS 760
F + +K S+ V T V P TN H+ WSDGK V SP+ ++
Sbjct: 722 FRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGKRNVTSPLVVT 770
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| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1855 (658.1 bits), Expect = 2.0e-191, P = 2.0e-191
Identities = 376/770 (48%), Positives = 498/770 (64%)
Query: 12 LVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDS---AEILYT 68
L+L FF S ++ + D +YI+H+ +S P+ F H +W+ S L+S+ S A +LY+
Sbjct: 15 LLLCFF--SPSSSSSDGLESYIVHVQRSHKPSLFSSHNNWHVSLLRSLPSSPQPATLLYS 72
Query: 69 YDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPTSGS 128
Y +HGFS +L+ + +L + P ++SV+P+ E+HTT +P FLG +++ L+ S
Sbjct: 73 YSRAVHGFSARLSPIQTAALRRHPSVISVIPDQAREIHTTHTPAFLGFSQNSGLWSNSNY 132
Query: 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188
+VIVGVLDTG+WPE SF D+GLGP+PS+WKG CE G +F AS+CNRKLIGAR F RG
Sbjct: 133 GEDVIVGVLDTGIWPEHPSFSDSGLGPIPSTWKGECEIGPDFPASSCNRKLIGARAFYRG 192
Query: 189 YEATLGPIDE--SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXX 246
Y + +KES+SPRD +GHGTHTASTAAGSVV ASL+ Y
Sbjct: 193 YLTQRNGTKKHAAKESRSPRDTEGHGTHTASTAAGSVVANASLYQYARGTATGMASKARI 252
Query: 247 XXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLG--GGTSDYYKDSVAIGAFAAMEKG 304
YK+CW GGC+ SDILAA++QA+ D V+V+S+S+G G +Y+ DS+AIGAF A G
Sbjct: 253 AAYKICWTGGCYDSDILAAMDQAVADGVHVISLSVGASGSAPEYHTDSIAIGAFGATRHG 312
Query: 305 ILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLP 364
I+VSCSAGN+GP+ + +N+APWI TVGA T+DR+F A G+G+ ++G SLY G+ LP
Sbjct: 313 IVVSCSAGNSGPNPETATNIAPWILTVGASTVDREFAANAITGDGKVFTGTSLYAGESLP 372
Query: 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXXXXXX 424
L VY+G+ + LC L V GKIV+CDRG NAR
Sbjct: 373 DSQLSLVYSGDCGS----RLCYPGKLNSSLVEGKIVLCDRGGNARVEKGSAVKLAGGAGM 428
Query: 425 XXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEP-SP 483
NT +GEEL AD+HL+PAT VG K GD I+ Y+ + PT I F GT +G P SP
Sbjct: 429 ILANTAESGEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTAKISFLGTLIGPSPPSP 488
Query: 484 VVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMS 543
VAAFSSRGPN +TP +LKPD+IAPGVNILAGW+G VGPT L D RRV FNIISGTSMS
Sbjct: 489 RVAAFSSRGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDIDPRRVQFNIISGTSMS 548
Query: 544 CPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHV 603
CPHVSGLAALL+ AHP+WSPAAI+SAL+TTAY +G+ ++D+ATGK+S F HGAGHV
Sbjct: 549 CPHVSGLAALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDLATGKSSNSFIHGAGHV 608
Query: 604 NPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKF---TCDASKRYSLADFNYP 660
+P ALNPGLVYD+ V +Y+ FLCA+ Y I + C+ SK + D NYP
Sbjct: 609 DPNKALNPGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYDACETSKLRTAGDLNYP 668
Query: 661 SFAVNIETAQSSSGSSVLKYTRSLTNVGP--PGTYKVFITSSTGPGVKISVEPATLSFTQ 718
SF+V +S+G V+KY R + NVG Y+V + S V+I V P+ L+F++
Sbjct: 669 SFSVVF----ASTGE-VVKYKRVVKNVGSNVDAVYEVGVKSPAN--VEIDVSPSKLAFSK 721
Query: 719 ANEKKSYTVTFT-------VSSMPSNTNSFAHLEWSDGKYIVGSPIAISW 761
Y VTF V S+P + F +EW+DG+++V SP+A+ W
Sbjct: 722 EKSVLEYEVTFKSVVLGGGVGSVPGH--EFGSIEWTDGEHVVKSPVAVQW 769
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| UNIPROTKB|Q69P78 OJ1344_B01.33 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1851 (656.6 bits), Expect = 5.3e-191, P = 5.3e-191
Identities = 386/766 (50%), Positives = 497/766 (64%)
Query: 7 LISL-LLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVS--DSA 63
L++L +LV+ V + + D ATYI+++ + PA + H HW+ + L S+S S
Sbjct: 7 LLALAVLVVVSSCVRLVSGAGDGAATYIVYLNPALKPAPYATHLHWHHAHLASLSVDPSR 66
Query: 64 EILYTYDNVI-HGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANL 122
+LY+Y + F+ +L +L P + SV ++ LHTTRSP FL L +
Sbjct: 67 HLLYSYTSAAPSAFAARLLPSHVAALRGHPAVASVHEDVILPLHTTRSPLFLHLPPY-DA 125
Query: 123 FPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETG-TNFNASNCNRKLIG 181
G++++VI+GVLDTGVWPES SF D G+GPVPS W+G+CET T+F +S CNRKLIG
Sbjct: 126 PDADGASTDVIIGVLDTGVWPESPSFGDVGMGPVPSRWRGSCETNATDFPSSMCNRKLIG 185
Query: 182 ARYFARGYEATLGPIDE--SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXX 239
AR F RGY A G S E SPRD DGHGTHTASTAAG+VV A L GY
Sbjct: 186 ARAFFRGYGAGGGGNGSHVSLEFSSPRDHDGHGTHTASTAAGAVVADAGLLGYAEGTARG 245
Query: 240 XXXXXXXXXYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFA 299
YKVCW GCFSSDILA +E+AIDD V+VLS+SLGGG +D +A+GA A
Sbjct: 246 MAPGARVAAYKVCWRQGCFSSDILAGMEKAIDDGVDVLSLSLGGGAFPLSRDPIAVGALA 305
Query: 300 AMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYK 359
A +GI+V+CSAGN+GPS SL N APW+ TVGAGTLDR+FPA+ LGNG+ ++G+SLY
Sbjct: 306 ATRRGIVVACSAGNSGPSPSSLVNTAPWVITVGAGTLDRNFPAYAELGNGETHAGMSLYS 365
Query: 360 GDGLPGKLLPFVY-AGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXX 418
GDGL + LP VY G + + LCM TL V GK+V+CDRG N+R
Sbjct: 366 GDGLGDEKLPVVYNKGIRAGSNASKLCMEGTLDAAAVKGKVVLCDRGGNSRVEKGLVVKQ 425
Query: 419 XXXXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVG 478
NT +GEE+VAD+HLLPA AVG K GDAI+ Y+ SD V + F GT +
Sbjct: 426 AGGVGMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVESDADAEVGLTFAGTALD 485
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V P+PVVAAFSSRGPN +LLKPD+I PGVNILAGW+G+VGPTGL D RR FNI+S
Sbjct: 486 VRPAPVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVGPTGLTVDERRSPFNILS 545
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDH 598
GTSMSCPH+SGLAA +KAAHP+WSP+AI+SALMTTAY G + D A+ +TP+
Sbjct: 546 GTSMSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTGSPIVDAASNTTATPWSI 605
Query: 599 GAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSL-ARRKFTCDASKRYSLADF 657
GAGHV+PV AL+PGLVYD +VDDY+ FLC++ + Q+ ++ A TC K S D
Sbjct: 606 GAGHVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAITAAPNVTCQR-KLSSPGDL 664
Query: 658 NYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPG-VKISVEPATLSF 716
NYPSF+V SSS S+ +KY R LTNVG G V+ TGP + ++V+PA L+F
Sbjct: 665 NYPSFSVVFGRRSSSSRSTTVKYRRELTNVGD-GR-SVYTARVTGPSDIAVAVKPARLAF 722
Query: 717 TQANEKKSYTVTFTVSSMPSNTNS-FAHLEWSDGKYIVGSPIAISW 761
+A +K YTVTF ++ T++ F L WS+G++ V SPI+ +W
Sbjct: 723 KKAGDKLRYTVTFKSTTPGGPTDAAFGWLTWSNGEHDVRSPISYTW 768
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| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1817 (644.7 bits), Expect = 2.1e-187, P = 2.1e-187
Identities = 365/766 (47%), Positives = 490/766 (63%)
Query: 6 SLISLLLVLGFFDVSVAAQNPDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEI 65
S I LLL L F +S AA + T+I + MP+ F H HWY + ++ + I
Sbjct: 4 STIVLLLFLSFPFISFAASQAAK--TFIFRIDGGSMPSIFPTHYHWYSTEF---AEESRI 58
Query: 66 LYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANLFPT 125
++ Y V HGFS +T +EA++L P +L+V + + ELHTTRSP+FLGL L+
Sbjct: 59 VHVYHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLGLQNQKGLWSE 118
Query: 126 SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYF 185
S S+VI+GV DTG+WPE +SF D LGP+P W+G CE+G F+ NCNRK+IGAR+F
Sbjct: 119 SDYGSDVIIGVFDTGIWPERRSFSDLNLGPIPKRWRGVCESGARFSPRNCNRKIIGARFF 178
Query: 186 ARGYEAT-LGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXX 244
A+G +A +G I+++ E SPRD DGHGTHT+STAAG AS+ GY
Sbjct: 179 AKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYASGVAKGVAPKA 238
Query: 245 XXXXYKVCWV-GGCFSSDILAAIEQAIDDNVNVLSMSLGGG---TSDYYKDSVAIGAFAA 300
YKVCW GC SDILAA + A+ D V+V+S+S+GGG TS YY D +AIG++ A
Sbjct: 239 RIAAYKVCWKDSGCLDSDILAAFDAAVRDGVDVISISIGGGDGITSPYYLDPIAIGSYGA 298
Query: 301 MEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKG 360
KGI VS SAGN GP+ S++N+APW+TTVGA T+DR+FPA LG+G GVSLY G
Sbjct: 299 ASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFPADAILGDGHRLRGVSLYAG 358
Query: 361 DGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARXXXXXXXXXXX 420
L G++ P VY G S ++ +LCM +TL P++V GKIV+CDRG + R
Sbjct: 359 VPLNGRMFPVVYPGK-SGMSSASLCMENTLDPKQVRGKIVICDRGSSPRVAKGLVVKKAG 417
Query: 421 XXXXXXXNTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVE 480
N SNGE LV DAHL+PA AVG GD IK+Y S P P +I F GT VG++
Sbjct: 418 GVGMILANGASNGEGLVGDAHLIPACAVGSNEGDRIKAYASSHPNPIASIDFRGTIVGIK 477
Query: 481 PSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
P+PV+A+FS RGPN ++PE+LKPD+IAPGVNILA W+ AVGPTGL +D R+ FNI+SGT
Sbjct: 478 PAPVIASFSGRGPNGLSPEILKPDLIAPGVNILAAWTDAVGPTGLPSDPRKTEFNILSGT 537
Query: 541 SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGA 600
SM+CPHVSG AALLK+AHP+WSPA IRSA+MTT + + + L D +TGK++TP+D+G+
Sbjct: 538 SMACPHVSGAAALLKSAHPDWSPAVIRSAMMTTTNLVDNSNRSLIDESTGKSATPYDYGS 597
Query: 601 GHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYP 660
GH+N A+NPGLVYD+T DDY+ FLC++ Y I + R C +++ S + NYP
Sbjct: 598 GHLNLGRAMNPGLVYDITNDDYITFLCSIGYGPKTIQVITRTPVRCPTTRKPSPGNLNYP 657
Query: 661 SFAVNIETAQSSSGSSVLKYTRSLTNVGPP-GTYKVFITSSTGPGVKISVEPATLSFTQA 719
S T + S + R+ TNVG Y+ I S G V ++V+P L FT A
Sbjct: 658 SITAVFPTNRRGLVSKTV--IRTATNVGQAEAVYRARIESPRG--VTVTVKPPRLVFTSA 713
Query: 720 NEKKSYTVTFTVSS---MPSNTNS-FAHLEWSDG-KYIVGSPIAIS 760
+++SY VT TV++ + T + F + W DG K++V SPI ++
Sbjct: 714 VKRRSYAVTVTVNTRNVVLGETGAVFGSVTWFDGGKHVVRSPIVVT 759
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65351 | SUBL_ARATH | 3, ., 4, ., 2, 1, ., - | 0.7572 | 0.9737 | 0.9801 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00019628001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (762 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 762 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-121 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 8e-38 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-35 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 7e-25 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 9e-21 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-19 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-18 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-18 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 6e-17 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-16 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 4e-15 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 5e-14 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-12 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 5e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 6e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-11 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-10 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-10 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-09 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 4e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-09 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 6e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 6e-09 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-08 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-08 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-07 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 5e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 7e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 5e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 9e-06 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 9e-06 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 1e-05 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 5e-05 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 6e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 7e-05 | |
| cd04818 | 118 | cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas | 7e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 7e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 1e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-04 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-04 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 5e-04 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 6e-04 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 7e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.001 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.001 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.002 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.002 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 366 bits (942), Expect = e-121
Identities = 137/237 (57%), Positives = 171/237 (72%), Gaps = 4/237 (1%)
Query: 103 YELHTTRSPEFLGLDKSANLFPTSGSASE--VIVGVLDTGVWPESKSFDDTGLGPVPSSW 160
Y+LHTTRSP+FLGL + + + +I+GVLDTG+WPE SF D G GP P +W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 161 KGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAA 220
G C TG +FN +CN KLIGARYF+ GY+A G + E +SPRD DGHGTHTASTAA
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAA 119
Query: 221 GSVVEGASLFGYAAGTARGMATRARVAAYKVCWV-GGCFSSDILAAIEQAIDDNVNVLSM 279
G+VV AS+ G+A GTA G+A RAR+A YKVCW GGCF SDILAAI+QAI D V+V+S
Sbjct: 120 GNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISY 179
Query: 280 SLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTL 336
S+GGG+ D Y+D +AI A+E GI V+ SAGN+GP + ++ NVAPW+TTV A TL
Sbjct: 180 SIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 8e-38
Identities = 65/128 (50%), Positives = 81/128 (63%), Gaps = 4/128 (3%)
Query: 344 VSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCD 403
V+LGNG+ G SLY G K P VY S + +LC+ +L P KV GKIV+CD
Sbjct: 2 VTLGNGKTIVGQSLYPG---NLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCD 58
Query: 404 RGVN-ARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVS 462
RG N +RV KG VKAAGG GM+LAN ++G ++VADAH+LPA V + G AI SY+ S
Sbjct: 59 RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINS 118
Query: 463 DPKPTVTI 470
PT TI
Sbjct: 119 TSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 47/75 (62%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 501 LKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE 560
LKPD+ APGV+ILA W+ D+R F ISGTSM+ PHV+G+AALLK+AHP+
Sbjct: 236 LKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 561 WSPAAIRSALMTTAY 575
WSPAAI+SALMTTAY
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 53/130 (40%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 479 VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
V + V SSRGP + +KPD++APGV+I++ G TG A +S
Sbjct: 186 VAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPG--SGTGYA---------RMS 233
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDH 598
GTSM+ PHV+G AALLK AHP+WSPA I++ALM TA Y + G
Sbjct: 234 GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQ 285
Query: 599 GAGHVNPVSA 608
GAG V+ + A
Sbjct: 286 GAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 9e-21
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 195 PIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWV 254
P S D GHGTH A AG G GT +G+A +A + AYKV
Sbjct: 48 PYPSPLGDASAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPKADLYAYKVLGP 99
Query: 255 GG-CFSSDILAAIEQAIDDNVNVLSMSLGGG-TSDYYKDSVAIGAFAAMEKGILVSCSAG 312
GG + I+AAIEQA+DD ++V+++SLG D++AI A++ G++V +AG
Sbjct: 100 GGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAIN--NAVKAGVVVVAAAG 157
Query: 313 NAGPSSYSLSN--VAPWITTVGAGTLDRDFPA 342
N+GP+ Y++ + AP TVGA T+ A
Sbjct: 158 NSGPAPYTIGSPATAPSAITVGASTVADVAEA 189
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 58/229 (25%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
+ V VLDTG+ FD +
Sbjct: 4 ITVAVLDTGIDAPHPDFDGRIIRFAD---------------------------------- 29
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAA-GTARGMATRARVAAYK 250
++ +P DD+GHGTH A AGS G A+ G +G+A A + K
Sbjct: 30 ---FVNTVNGRTTPYDDNGHGTHVAGIIAGS--------GRASNGKYKGVAPGANLVGVK 78
Query: 251 VC-WVGGCFSSDILAAIEQAIDD----NVNVLSMSLGGGTSDYYKDSVAIGAF-AAMEKG 304
V G SDI+A I+ +++ N+ V+++SLG Y + A + G
Sbjct: 79 VLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAG 138
Query: 305 ILVSCSAGNAGPSSYSLSN--VAPWITTVGA----GTLDRDFPAFVSLG 347
I+V +AGN+GP ++++ +P + TVGA G D F S G
Sbjct: 139 IVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHDDGISYFSSRG 187
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 480 EPSPVVAAFSSRGPNSITPE-LLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538
++ FSSRGP T + +KPD++APG NI++ S P S
Sbjct: 175 PHDDGISYFSSRGP---TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----S 227
Query: 539 GTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575
GTSM+ PHVSG ALL A+P +P ++ L TA
Sbjct: 228 GTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 59/224 (26%), Positives = 77/224 (34%), Gaps = 48/224 (21%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
V V V+DTGV P+ D G
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGG--------------------------------- 27
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
D P D +GHGTH A A S G G+A A++ KV
Sbjct: 28 -NDDDDNENGPTDPDDGNGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKV 77
Query: 252 CW-VGGCFSSDILAAIEQAI-DDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSC 309
G SSDI AAI+ A D +V+++SLGG S +A + G+LV
Sbjct: 78 LDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVA 137
Query: 310 SAGNAGPSS---YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQ 350
+AGN GP +P + VGA D + S G
Sbjct: 138 AAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAG 181
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-17
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 31 TYIIHMAK-SEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLE 89
TYI+ A F H W+ SS + + A ILY+Y + +GF+ +LT EEAE L
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHASSKEE-AAGASILYSYKHGFNGFAAKLTEEEAEKLR 59
Query: 90 QRPGILSVLPELKYELH 106
+ P + V P+ ELH
Sbjct: 60 KHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-16
Identities = 57/178 (32%), Positives = 75/178 (42%), Gaps = 33/178 (18%)
Query: 414 AVVKAAGGLGMVLANTESNG-------EELVADAHLLPATAVGQKFGDAIKSYLVSDPKP 466
AV K A + M L T + E L L + G + S +
Sbjct: 94 AVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAAL 153
Query: 467 TVTILFEGTKVGVEPSPVVAAFSSRG---------PNSITPELLKPDMIAPGVNILAGWS 517
+V V+ A FSS G P+S E KPD+ APGV++ +
Sbjct: 154 SVG--------AVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQ 205
Query: 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575
GA G +SGTSM+ PHV+G+AALL AAHP+ SP I+ AL TAY
Sbjct: 206 GANGDGQYTR---------LSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 20/94 (21%)
Query: 481 PSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
+ +A+FS+ G ++ D+ APGV+IL+ G + +SGT
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPGG-------------GYGYMSGT 224
Query: 541 SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
SM+ PHV+G AALL + +P + A I+ A++++A
Sbjct: 225 SMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 65/228 (28%), Positives = 87/228 (38%), Gaps = 68/228 (29%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
V V V+DTG+ S D K G NF + N
Sbjct: 2 VKVAVIDTGI---DSSHPDL---------KLNIVGGANFTGDDNN--------------- 34
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGS-----VVEGASLFGYAAGTARGMATRARV 246
+D +GHGTH A A VV G+A A +
Sbjct: 35 ------------DYQDGNGHGTHVAGIIAALDNGVGVV--------------GVAPEADL 68
Query: 247 AAYKVCWVGGC-FSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAI-GAF-AAMEK 303
A KV G SDI+A IE AI++ +++++MSLGG DS A+ A A
Sbjct: 69 YAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGP-----SDSPALREAIKKAYAA 123
Query: 304 GILVSCSAGNAGPSSYSLSNVA--PWITTVGAGTLDRDFPAFVSLGNG 349
GILV +AGN+G S A P + VGA + + +F S G
Sbjct: 124 GILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRASFSSTGPE 171
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 5e-15
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV---CW 253
D + + D HG H A AG+ E + G +G+A A++ A KV
Sbjct: 70 DNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-----KGVAPEAQLLAMKVFSNPE 124
Query: 254 VGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFA-AMEKGILVSCSAG 312
G + AIE A+ +V++MSLG D A A E G++V +AG
Sbjct: 125 GGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAG 184
Query: 313 NAG----PSSYSLSNVAPWITTVGAGTLDRD 339
N G +S L+ P TVG+ D
Sbjct: 185 NDGNSGSGTSKPLATNNPDTGTVGSPATADD 215
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 6e-15
Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 21/126 (16%)
Query: 488 FSSRGPNSITPEL-LKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPH 546
FSS GP T EL LKPD+ APG NIL+ + A G + ++SGTSM+ P+
Sbjct: 191 FSSWGP---TNELYLKPDVAAPGGNILSTYPLAGG-----------GYAVLSGTSMATPY 236
Query: 547 VSGLAALLKAA-HPEWSPAAIRSALMTTA-YVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
V+G AALL A H + SPA +R L +TA + + +G A + GAG VN
Sbjct: 237 VAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG----TSALPDLAPVAQQGAGLVN 292
Query: 605 PVSALN 610
AL
Sbjct: 293 AYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 484 VVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMS 543
A+FSS GP ++ APGV+IL+ T D +SGTSM+
Sbjct: 161 NRASFSSTGPE--------VELAAPGVDILS--------TYPNNDYAY-----LSGTSMA 199
Query: 544 CPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
PHV+G+AAL+ + PE + A +R AL T
Sbjct: 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A FS+ G KPD++APG NIL+ G ++ SGTSM+
Sbjct: 177 IADFSNYGGPVDGI---KPDIVAPGGNILSSGPG----------GDLGGYDSHSGTSMAA 223
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
P V+G AALL +A+P +P +R+ L+TTA
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTA 253
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 45/230 (19%)
Query: 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188
+ +V+V V+DTGV + D + W E N + + Y G
Sbjct: 1 SGDVVVAVIDTGV---DYNHPDL----KDNMWVNPGEIPGN-GIDDDGNGYVDDIY---G 49
Query: 189 YEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAA 248
+ + P DD+GHGTH A G A G+A ++
Sbjct: 50 W-------NFVNNDNDPMDDNGHGTHVAGIIGAV-------GNNGIGIA-GVAWNVKIMP 94
Query: 249 YKVCWVGGCFS-SDILAAIEQAIDDNVNVLSMSLGGGTSD-YYKDSVAIGAFAAMEKGIL 306
K G + SD + AI+ A+D +++ S GGG +D++A A++ GIL
Sbjct: 95 LKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGIL 150
Query: 307 VSCSAGNAG---------PSSYSLSNVAPWITTVGAGTLDRDFPAFVSLG 347
+AGN G P+SY L N I +V A + +F + G
Sbjct: 151 FVAAAGNDGTNNDKTPTYPASYDLDN----IISVAATDSNDALASFSNYG 196
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILA 264
D GHGTH + T G +G + G+A A + KV GG S I+A
Sbjct: 39 VFDAGGHGTHVSGTIGGGGAKGVYI---------GVAPEADLLHGKVLDDGGGSLSQIIA 89
Query: 265 AIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNV 324
+E A++ + +V+SMSLGG A+ A + + G L SAGN G +
Sbjct: 90 GMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSN-QTGALFVVSAGNEGHGTSGSPGS 148
Query: 325 APWITTVGAGTLDRD 339
A +VGA +DRD
Sbjct: 149 AYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 21/148 (14%)
Query: 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSD--ILA 264
D++GHGTH A A G+ G+A A++ + KV G +D +
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSG--------GVGVAPNAKLESVKVL--PGSGGTDSELAG 92
Query: 265 AIEQAI--DDNVNVLSMSLGGG--TSDYYKDSVAIGAF-AAMEKGILVSCSAGNAGPS-- 317
AIE A +++ V++MSLG + ++ A A KG L +AGN G
Sbjct: 93 AIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYAD 152
Query: 318 --SYSLSNVAPWITTVGAGTLDRDFPAF 343
S A I TVGA T + F
Sbjct: 153 NNPVSDPASANNIITVGAVTENGTIADF 180
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APGV+IL+ W G T +SGTSM+ PHV+GLAA L + P+ SP
Sbjct: 194 DIFAPGVDILSAWIG--SDTA---------TATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 564 AAIRSALMTTA 574
A +++ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 29/149 (19%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV--CWVGGCFSSD 261
D +GHGTH A T G G+A +A + A KV C G S
Sbjct: 58 PDSDCNGHGTHVAGTVGGKTY--------------GVAKKANLVAVKVLDCNGSGT-LSG 102
Query: 262 ILAAIEQAIDDNVN-----VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAG- 315
I+A +E +D V +MSLGGG S +VA AA+ G++V +AGN+
Sbjct: 103 IIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AAVNAGVVVVVAAGNSNQ 158
Query: 316 -PSSYSLSNVAPWITTVGAGTLDRDFPAF 343
+YS ++ AP TVGA D +F
Sbjct: 159 DACNYSPAS-APEAITVGATDSDDARASF 186
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFSSDIL 263
DD+GHGTH A A + G G A G+A +A++ KV G +DI
Sbjct: 64 AMDDNGHGTHVAGIIAAATNNG---TGVA-----GVAPKAKIMPVKVLDANGSGSLADIA 115
Query: 264 AAIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLS 322
I A D V+++SLGGG S ++++ A KG++V +AGN G SS S
Sbjct: 116 NGIRYAADKGAKVINLSLGGGLGSTALQEAINY----AWNKGVVVVAAAGNEGVSSVSYP 171
Query: 323 NVAPWITTVGAGTLDRDFPAFVS 345
P V A T D A S
Sbjct: 172 AAYPGAIAVAA-TDQDDKRASFS 193
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 11/72 (15%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
D+ APG +IL+ + G + +SGTSM+ P V+G+AALL +A+P+
Sbjct: 181 GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 562 SPAAIRSALMTT 573
+PA +++AL++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 5e-12
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A FS RGP +KPD+ APGVNIL P G + SGTS++
Sbjct: 359 IAIFSGRGPT--RDGRIKPDIAAPGVNILT-----ASPGG--------GYTTRSGTSVAA 403
Query: 545 PHVSGLAALL 554
V+G ALL
Sbjct: 404 AIVAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 17/93 (18%)
Query: 484 VVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMS 543
V+A FSSRGP++ +KPD+ APGVNI + G + SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMA 230
Query: 544 CPHVSGLAALLKAAHPEWSPA--AIRSALMTTA 574
PHV+G+AALL +A+P A + L TA
Sbjct: 231 APHVAGVAALLWSANPSLIGDVDATEAILTETA 263
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 18/103 (17%)
Query: 482 SPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTS 541
S VA+FSSRGP +KPD++APG IL+ SG G + + + SGTS
Sbjct: 198 SDTVASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGGIGDTSDSA----YTSKSGTS 251
Query: 542 MSCPHVSGLAALL----------KAAHPEWSPAAIRSALMTTA 574
M+ P V+G AALL +P S A +++ L+ +A
Sbjct: 252 MATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APG IL+ + +SGTSM+ PHV+G+AALL + P S
Sbjct: 200 DVSAPGGGILSTTPDGD-------------YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 564 AAIRSALMTTA 574
+ +R AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 28/142 (19%)
Query: 472 FEGTKVGVEPSPVVAAFSSRGPNSI---TPELL-KPDMIAPGVNILAGWSGAVGPTGLAT 527
+ T SS P I TPE+ KPD+ AP G G
Sbjct: 156 YGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPD--------GVNGTVDGDG 207
Query: 528 DSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDI 587
D GTS + PH +G+AAL+ +A+P +PA IR AL +TA D+
Sbjct: 208 DG----PPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA----------LDM 253
Query: 588 ATGKASTPFDHGAGHVNPVSAL 609
G+G V+ A+
Sbjct: 254 GEPGYD--NASGSGLVDADRAV 273
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 475 TKVGVEPSPVVAAFSSRGPNSITPEL-LKPDMIAPGVNILAGWSGAVGPTGLATDSRRVS 533
KV ++ FSS GP TP+L LKPD+ APG NI + V S
Sbjct: 224 KKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYS----TVNDNTYGYMS---- 272
Query: 534 FNIISGTSMSCPHVSGLAAL----LKAAHPEWSPA----AIRSALMTTAY-VSYKNGQKL 584
GTSM+ PHV+G +AL LK +P+ S +++ LM TA K
Sbjct: 273 -----GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKT 327
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSD-IL 263
P D GHGTH A A + + +G+ G+A A + AY+V G + D I+
Sbjct: 64 PMDCQGHGTHVAGIIAAN----PNAYGFT-----GVAPEATLGAYRVFGCSGSTTEDTII 114
Query: 264 AAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAG 315
AA +A +D +V++ SL GG S + +D A+ A ++ G++V+ +AGN G
Sbjct: 115 AAFLRAYEDGADVITASL-GGPSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 30/161 (18%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDIL 263
P DD+GHGTHT T G+ + G G+A AR A + G +D L
Sbjct: 47 LPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYL 97
Query: 264 AAIEQAI---DDNVN---------VLSMSLGG--GTSDYYKDSVAIGAFAAMEKGILVSC 309
+ + D N V++ S GG G +++ + +VA A+ A GI
Sbjct: 98 RCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVA--AWRA--AGIFPVF 153
Query: 310 SAGNAGPS-SYSLSNVA--PWITTVGAGTLDRDFPAFVSLG 347
+AGN GP S + A P VGA + F S G
Sbjct: 154 AAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSSRG 194
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGM 424
P VY GN +A + L V GKIV+ RG + V+K + AG G+
Sbjct: 5 TGTGPLVYVGNGDDAGGCCP---EDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGV 61
Query: 425 VLANTESNGEELVADA---HLLPATAVGQKFGDAI 456
++ N ++ G +P + + G+A+
Sbjct: 62 IIYNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSD 261
+ +D GHGTH A T G V G G ARG A A KV GG
Sbjct: 39 GEDVQDGHGHGTHCAGTIFGRDVPGPRY-----GVARG-AEIA--LIGKVLGDGGGGDGG 90
Query: 262 ILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIG------------------------- 296
ILA I+ A+ + +V+SMSLG G
Sbjct: 91 ILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVA 150
Query: 297 AFAAMEKGILVSCSAGN 313
A AA+ +G L+ +AGN
Sbjct: 151 AQAALARGTLIVAAAGN 167
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 32/132 (24%)
Query: 478 GVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNII 537
++ ++FS GP D+ APG NI+ S + G GLAT S
Sbjct: 183 SIDRDGTPSSFSLPGP--------WVDLAAPGENIV---SLSPGGDGLATTS-------- 223
Query: 538 SGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFD 597
GTS + P VSG AAL+++ P+ + A +R + TA + G+
Sbjct: 224 -GTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATADHPARGGRD------------DY 270
Query: 598 HGAGHVNPVSAL 609
G G V+PV+AL
Sbjct: 271 VGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 477 VG-VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFN 535
VG V+ + A+FSS GP + LKPD++A G I + +
Sbjct: 177 VGAVDANGNKASFSSIGPTADG--RLKPDVMALGTGI-------------YVINGDGNIT 221
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
+GTS SCP ++GL A L AHP W+ I+ A++ +A
Sbjct: 222 YANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 24/131 (18%)
Query: 197 DESKESKSPRDDD---GHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC- 252
E+ E+ D GHGT A A A G +G+A + +Y+V
Sbjct: 38 KEAGETGDINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVFG 85
Query: 253 WVGGCFSSDILAAIEQAIDDNVNVLSMSLGG---GTSDYYKDSVAIGAFA-----AMEKG 304
G SS I+ AI A DD V+V+++SLGG +Y D V A+ A KG
Sbjct: 86 SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKG 145
Query: 305 ILVSCSAGNAG 315
+V +AGN G
Sbjct: 146 SIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 22/125 (17%)
Query: 477 VGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNI 536
V FS+ S + D+ APGV+I++ G +
Sbjct: 191 AAVGALGRTGNFSAVANFSNG----EVDIAAPGVDIVSAA----PGGGYRS--------- 233
Query: 537 ISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPF 596
+SGTSM+ PHV+G+AAL A P+ A+ + L + A G
Sbjct: 234 MSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-----FAPGLDLPDR 288
Query: 597 DHGAG 601
G G
Sbjct: 289 GVGLG 293
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 478 GVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSR--RVSFN 535
+ A++S+ GP D+ APG + + +G P + ++
Sbjct: 196 ATDLRGQRASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYG 247
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573
+ GTSM+ PHV+G+AAL+K+ +P +PA I S L +T
Sbjct: 248 FLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Query: 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILA 264
D DGHGT A AA G + G A G A+ M R + G + SDI
Sbjct: 36 TSDIDGHGTACAGVAAAVGNNGLGVAGVAPG-AKLMPVRIADSL------GYAYWSDIAQ 88
Query: 265 AIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAM--EKGILVSCSAGNAGPSSYSLS 322
AI A D+ +V+S S GG S S A KG +V +AGN+G S S
Sbjct: 89 AITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGY 148
Query: 323 NVAPWITTVGAGTLDRDFPAFVSLGN 348
P + V A + ++ + GN
Sbjct: 149 AANPSVIAVAATDSNDARASYSNYGN 174
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (129), Expect = 2e-07
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 481 PSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGT 540
S VA+FS+ G + D+ APGVNIL + +SGT
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNIL------SLSAVNTLPGDGADYVTLSGT 361
Query: 541 SMSCPHVSGLAALLKAAHP-EWSPAAIRSALMTTAYVSYK----NGQKLQDIATGKASTP 595
SM+ PHVSG+AAL+ +A+P E +PA +R+ ++TTA ++ N A+T
Sbjct: 362 SMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAATD 421
Query: 596 FDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTA 633
G N + + T+ L A
Sbjct: 422 VAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAA 459
|
Length = 508 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 11/161 (6%)
Query: 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSS- 260
S + D DGHGTH A AG + +S+ Y +G+A +A++ + G SS
Sbjct: 47 SDTKDDVDGHGTHVAGIIAGKGNDSSSISLY-----KGVAPKAKLYFQDIGDTSGNLSSP 101
Query: 261 -DILAAIEQAIDDNVNVLSMSLGGGTSDYYKD-SVAIGAFAAMEKGILVSCSAGNAGPSS 318
D+ D + S S G ++ Y + A FA IL SAGN G
Sbjct: 102 PDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDG 161
Query: 319 YSLSNVAPW---ITTVGAGTLDRDFPAFVSLGNGQNYSGVS 356
+ + TVGA LG N V+
Sbjct: 162 SNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVA 202
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.2 bits (124), Expect = 7e-07
Identities = 58/290 (20%), Positives = 98/290 (33%), Gaps = 16/290 (5%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDIL 263
DD+GHGTH A T A + + + A A+ + + + G SD+
Sbjct: 178 PFLDDNGHGTHVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLGSGG-----GSGELSDVA 232
Query: 264 AAIEQAID--DNVNVLSMSLGGGTSDYYKDS-VAIGAFAAMEKGILVSCSAGNAGPSSYS 320
IE A + +V+++SLGG SD + A AA G+++ +AGN G ++
Sbjct: 233 EGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASG 292
Query: 321 LSNVAPW------ITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAG 374
P + VGA L +F + G+ + G + G
Sbjct: 293 GDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAA--PGVNILSLSAVNTLPG 350
Query: 375 NASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGE 434
+ ++ + M VA ++ + Q ++ GL + G
Sbjct: 351 DGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGG 410
Query: 435 ELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPV 484
L A G + S + P L G P+ V
Sbjct: 411 GLANLDAAATDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAV 460
|
Length = 508 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 39/198 (19%), Positives = 60/198 (30%), Gaps = 59/198 (29%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
V VGV+D+G+ F ++ A Y+ +A
Sbjct: 5 VKVGVIDSGIDLSHPEF---------------------------AGRVSEASYYVAVNDA 37
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
D D HGTH A A + G G A A + + +
Sbjct: 38 GYASNG---------DGDSHGTHVAGVIAAARDG-----GGMHGVAPD----ATLYSARA 79
Query: 252 CWVGGC--FSSDILAAIEQAIDDNVNVLSMSLGGGTSD-----------YYKDSVAIGAF 298
G +DI AA + V +++ S GG + + + + A
Sbjct: 80 SASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAAL 139
Query: 299 AAM-EKGILVSCSAGNAG 315
A G L +AGN G
Sbjct: 140 ARAANAGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A++S+ G D++APGV I +G G A D + SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTG----RGSAGDYPGGGYGSFSGTSFASP 214
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTT 573
+G+AAL+ +A+P +PA + L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-06
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 395 VAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLAN-TESNGEELVADAHLLPATAVGQKFG 453
V GKI + RG V+K A KAAG +G+++ N + + +A +P + ++ G
Sbjct: 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDG 105
Query: 454 DAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGP 493
+A+K+ L + + + F TK +P +A FSSRGP
Sbjct: 106 EALKAAL----ESSKKLTF-NTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 16/125 (12%)
Query: 352 YSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQ 411
+ + + P V G + +G GKIV+ RG + +
Sbjct: 12 SALLFNPPSSPVGVVAGPLVGCGYGTTDDSGADVK----------GKIVLVRRGGCSFSE 61
Query: 412 KGAVVKAAGGLGMVLANTESNGEELVADAHL------LPATAVGQKFGDAIKSYLVSDPK 465
K + AG +++ N + + L +P + G+A+ S L +
Sbjct: 62 KVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKT 121
Query: 466 PTVTI 470
TV +
Sbjct: 122 VTVDL 126
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 44/158 (27%)
Query: 188 GYEATLGPIDESKESKSP------RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMA 241
G E T I+ + S +P RD++GHGTH A AAG+ G +G+A
Sbjct: 51 GGEYTEEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNPDFKGVA 102
Query: 242 TRARVA--------AYKVCWVGGCF---SSDILAAIEQAID--DNVN---VLSMSLG--- 282
A + Y + +DI+ AI+ D +N V+++SLG
Sbjct: 103 PEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNF 162
Query: 283 ---GGTS--DYYKDSVAIGAFAAMEKGILVSCSAGNAG 315
GTS + Y D+++ GI V AGN G
Sbjct: 163 GSHDGTSLLERYIDAISRLR------GIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAI 566
APG NI + + +SGTS + PHVSG AALL P + +
Sbjct: 210 APGENIYS-----------TDPDGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQV 258
Query: 567 RSALMTTA 574
R L+TTA
Sbjct: 259 RQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
V ++SSRGP+ KPD+ A G W+ +F++ GTSM+
Sbjct: 221 VVSWSSRGPSIAG--DPKPDLAAIGA---FAWAPGRVLDSGGALDGNEAFDLFGGTSMAT 275
Query: 545 PHVSGLAALL------KAAHPEWSPAAIRSALMTTA 574
P +G AAL+ K E+ P +R+ LM+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAI 566
A GV+I+A T SG S + PHV+G+ ALL + P+ +
Sbjct: 167 ADGVDIIAPAPHGRYLTV-------------SGNSFAAPHVTGMVALLLSEKPDIDANDL 213
Query: 567 RSALMTTA 574
+ L A
Sbjct: 214 KRLLQRLA 221
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
VA FS+ G ++ D+ APG I + T + SGTSM+
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYS-----------TTPDNEYETD--SGTSMAA 260
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
P VSG+AAL+ + +P + ++ ++ +
Sbjct: 261 PVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 360 GDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEK--VAGKIVMCDRGVNARVQKGAVVK 417
G L V AG A A+N + C T AGKI + DRG K +
Sbjct: 6 GPALTNVTADVVLAGAA-PASNTDGC---TAFTNAAAFAGKIALIDRGTCNFTVKVLNAQ 61
Query: 418 AAGGLGMVLANTESNGEELV----ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTI 470
AG + +++AN + G + +PA + Q GDA+K+ L + TVT+
Sbjct: 62 NAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTVTL 118
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. Length = 118 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVN-ILAGWSGAVGPTGLATDSRRVSFNIISGTSMS 543
A+FS+ G D+ APGV IL+ G G ++ +SGTSM+
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMA 242
Query: 544 CPHVSGLAALLKAAHP-EWSPAAIRSALMTT 573
PHVSG+AAL+ + P ++P IR L +
Sbjct: 243 APHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 539 GTSMSCPHVSGLAAL----LKAAHPEWSPAAIRSALMTTAY 575
GTSMS P+ G AL LKA ++P ++R AL TA
Sbjct: 370 GTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 50/212 (23%), Positives = 71/212 (33%), Gaps = 58/212 (27%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFAR---- 187
V+V VLDTGV D +P G +F I A
Sbjct: 2 VVVAVLDTGVLFHH---PDLAGVLLP---------GYDF---------ISDPAIANDGDG 40
Query: 188 ---------GYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTAR 238
+ HGTH A T A G G A
Sbjct: 41 RDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVAGTIAAVTNNG-------VGVA- 92
Query: 239 GMATRARVAAYKVCWVGGCFSSDILAAIEQA-------IDDNVN---VLSMSLGGGT--S 286
G+A AR+ +V G SDI+ + A + N N V+++SLGG S
Sbjct: 93 GVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACS 152
Query: 287 DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS 318
++++ +G+LV +AGN G S+
Sbjct: 153 ATMQNAIN----DVRARGVLVVVAAGNEGSSA 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 28/158 (17%)
Query: 208 DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCF---SSDILA 264
DD HGT ST AG Y G G A A + V + +A
Sbjct: 46 DDDHGTAVLSTMAG----------YTPGVMVGTAPNASYYLARTEDVASETPVEEDNWVA 95
Query: 265 AIEQAIDDNVNVLSMSLGGGTSDYYKDS------------VAIGAFAAMEKGILVSCSAG 312
A E A V+++S SLG T D S ++ A A KG+LV SAG
Sbjct: 96 AAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAG 155
Query: 313 NAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLG 347
N G + + A + +VGA + + +F S+G
Sbjct: 156 NEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIG 193
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 25/107 (23%)
Query: 478 GVEPSPVVAAFSSRGPNSITPEL------LKPDMIAPGVNILAGWSGAVGPTGLATDSRR 531
G++ +A FSSRG T EL +KPD++ G + + L R
Sbjct: 159 GIDFDDNIARFSSRGMT--TWELPGGYGRVKPDIVTYGSGVYG--------SKLKGGCRA 208
Query: 532 VSFNIISGTSMSCPHVSGLAALLKAAHPE----WSPAAIRSALMTTA 574
+SGTS++ P V+G ALL + PE +PA+++ AL+ +A
Sbjct: 209 -----LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESA 250
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 478 GVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNIL-----AGWSGAVGPTGLATDSRRV 532
A +S GP S P +KPD++A G N+ G + +
Sbjct: 191 SAVGPAPAGATTSSGPGSPGP--IKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGG 248
Query: 533 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALM 571
F + GTS + P + LAA L A PE SP IR AL+
Sbjct: 249 GFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTP 595
+ SGTS + P V+G+ AL+ A+P SP RS L TA +D+ G ++
Sbjct: 244 VFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA----------RDVTKGASAQG 293
Query: 596 FDHGA 600
G
Sbjct: 294 TSAGP 298
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D APGV++ G + +SGTS + P V+ ALL A P P
Sbjct: 168 DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAALALLLQASPLA-P 213
Query: 564 AAIRSALMTTA 574
R+ L TA
Sbjct: 214 DDARARLAATA 224
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 24/120 (20%)
Query: 236 TARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDN---VNVLSMSLGGG---TSDYY 289
A +A A + Y G ++ L A A+ DN +V+S+S G Y
Sbjct: 82 YAGAIAPGANITLYFA---PGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAY 138
Query: 290 KDSV--AIGAFAAMEKGILVSCSAGNAGPSSYSLSNVA-----------PWITTVGAGTL 336
V AA GI V ++G++G P++T VG TL
Sbjct: 139 AQRVCNLFAQAAAQ--GITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTL 196
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSS-DILA- 264
D DGHGT A AG EG G A AR + R AA++ LA
Sbjct: 49 DCDGHGTLVAGIIAGRPGEGDGFSGVAPD-ARILPIRQTSAAFEPDEGTSGVGDLGTLAK 107
Query: 265 AIEQAIDDNVNVLSMSLGG-GTSDYYKDSVAIGAFA--AMEKGILVSCSAGNAGPSSYSL 321
AI +A D +V+++SL + D +GA A++KG++V +AGN G
Sbjct: 108 AIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAAAGNTGGDGQKT 167
Query: 322 SNVAP--WITTVGAGTLDRD 339
+ V P + + G++DRD
Sbjct: 168 TVVYPAWYPGVLAVGSIDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 46/167 (27%), Positives = 63/167 (37%), Gaps = 20/167 (11%)
Query: 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTA-RGMATRARVAAYKVCWVG---------- 255
D HGT AS AAG +L+GY RG+A A++AA K W G
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113
Query: 256 GCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYY------KDSVAIGAFAAMEKGILVSC 309
G D + V+V+S S G Y S + G+ +
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVS 173
Query: 310 SAGNAGP--SSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSG 354
+AGN GP + + A +VGA T + D+ F G SG
Sbjct: 174 AAGNGGPGYGTITAPGAASLAISVGAAT-NFDYRPFYLFGYLPGGSG 219
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 19/112 (16%)
Query: 211 HGTHTASTAAGSVVEGASLFG----YAAGTARGMATRARVAAYKVCWVGGCFSSDILAAI 266
HGT AS AG+ + L Y A +A + A+
Sbjct: 38 HGTAVASLLAGAGAQRPGLLPGADLYGADVFGRAGGGEGASAL-----------ALARAL 86
Query: 267 EQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS 318
+ + V V+++SL G + +VA AA +G+++ +AGN GP++
Sbjct: 87 DWLAEQGVRVVNISLAGPPNALLAAAVA----AAAARGMVLVAAAGNDGPAA 134
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.87 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.75 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.35 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.29 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.9 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.74 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.73 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.7 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.7 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.66 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.64 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.62 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.61 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.57 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.55 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.52 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.51 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.5 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.47 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.44 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.44 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.41 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.4 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.02 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.44 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.78 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.57 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.46 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.3 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.3 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.25 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 95.4 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.23 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.07 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.32 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.98 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.86 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 92.74 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 89.17 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 80.92 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=456.13 Aligned_cols=304 Identities=60% Similarity=1.023 Sum_probs=261.0
Q ss_pred eccCCCCCCcccCCcCCCC--CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceee
Q 004301 103 YELHTTRSPEFLGLDKSAN--LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLI 180 (762)
Q Consensus 103 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kii 180 (762)
++++++++++++++..... +|..+++|+||+|||||||||++||+|.+++..+++..|.+.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678899999999987655 47889999999999999999999999999989999999999999998888788999999
Q ss_pred eeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecC-CCCH
Q 004301 181 GARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG-GCFS 259 (762)
Q Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~ 259 (762)
+.++|..++..... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999887654322 123444567889999999999999999877666666666778999999999999999884 4889
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCc
Q 004301 260 SDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRD 339 (762)
Q Consensus 260 ~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~ 339 (762)
+++++||++|+++|++|||||||......+.+.+..+++.+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987645566788888889999999999999999988888888999999999730
Q ss_pred cceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHc
Q 004301 340 FPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAA 419 (762)
Q Consensus 340 ~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~ 419 (762)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCC
Q 004301 420 GGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499 (762)
Q Consensus 420 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 499 (762)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 500 LLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 500 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
+||||+|||.+|+++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 467999999999999875311 111222358999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=447.83 Aligned_cols=301 Identities=19% Similarity=0.179 Sum_probs=213.4
Q ss_pred cccCCcC--CCCCCc--CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccc
Q 004301 112 EFLGLDK--SANLFP--TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFAR 187 (762)
Q Consensus 112 ~~~g~~~--~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~ 187 (762)
..|+++. ++.+|. .+.+|+||+|||||||||++||||.++-... +....|.. .+.. +++..+ +...
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giDd--D~nG~v---dd~~ 363 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GIDD--DNNGNV---DDEY 363 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----cccc--ccCCcc---cccc
Confidence 4567664 345665 4678999999999999999999998641000 00001100 0000 011110 0011
Q ss_pred cccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHH
Q 004301 188 GYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAI 266 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai 266 (762)
++++.+ ...+|.|.+||||||||||||...++. .+.||||+|+|+++|++++.| +..+++++||
T Consensus 364 G~nfVd-------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI 428 (639)
T PTZ00262 364 GANFVN-------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHKLGRLGDMFKCF 428 (639)
T ss_pred cccccC-------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCCCccHHHHHHHH
Confidence 222211 123578899999999999999854332 248999999999999998877 7889999999
Q ss_pred HHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC--------------ccC----CCCce
Q 004301 267 EQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS--------------LSN----VAPWI 328 (762)
Q Consensus 267 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~v 328 (762)
+||++.|++|||||||+.. +...+..++.+|.++|++||+||||+|..... ++. ..|++
T Consensus 429 ~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nV 505 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNV 505 (639)
T ss_pred HHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCE
Confidence 9999999999999999743 33466777889999999999999999865321 111 23566
Q ss_pred EEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCch
Q 004301 329 TTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNA 408 (762)
Q Consensus 329 itVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~ 408 (762)
|+|||.+.+..
T Consensus 506 IaVGAv~~d~~--------------------------------------------------------------------- 516 (639)
T PTZ00262 506 ITVSNLIKDKN--------------------------------------------------------------------- 516 (639)
T ss_pred EEEeeccCCCC---------------------------------------------------------------------
Confidence 66666422110
Q ss_pred hhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecc
Q 004301 409 RVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAF 488 (762)
Q Consensus 409 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 488 (762)
....++.|
T Consensus 517 ------------------------------------------------------------------------~~~s~s~~ 524 (639)
T PTZ00262 517 ------------------------------------------------------------------------NQYSLSPN 524 (639)
T ss_pred ------------------------------------------------------------------------Cccccccc
Confidence 00023456
Q ss_pred cCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004301 489 SSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRS 568 (762)
Q Consensus 489 Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 568 (762)
|++|.. ++||+|||++|+++++.+ .|..++|||||||||||+||||++++|+|+++||++
T Consensus 525 Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~ 584 (639)
T PTZ00262 525 SFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIR 584 (639)
T ss_pred ccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 666632 349999999999998865 799999999999999999999999999999999999
Q ss_pred HHHhcccccccCCcccccccCCCCCCCCCCCC-CCcCccccCCCCeee
Q 004301 569 ALMTTAYVSYKNGQKLQDIATGKASTPFDHGA-GHVNPVSALNPGLVY 615 (762)
Q Consensus 569 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~-G~vd~~~A~~~~lv~ 615 (762)
+|++||.+++.. +..+|| |+||+++|++..+-+
T Consensus 585 iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 585 ILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 999999876321 113333 899999999866543
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=412.37 Aligned_cols=270 Identities=23% Similarity=0.217 Sum_probs=203.2
Q ss_pred CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCC
Q 004301 126 SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSP 205 (762)
Q Consensus 126 ~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
+++|+||+|||||||||.+||++.+.....++..+ .+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-----------------------~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-----------------------NVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-----------------------eeccc-------------cCCC
Confidence 57999999999999999999865432111111111 00000 1135
Q ss_pred CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 004301 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGT 285 (762)
Q Consensus 206 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 285 (762)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 67889999999999 389999999999874 35789999999999999999999999865
Q ss_pred CCC-cccHHHHHHHHHHhc-CCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCC
Q 004301 286 SDY-YKDSVAIGAFAAMEK-GILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDG 362 (762)
Q Consensus 286 ~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~ 362 (762)
.+. ....+..++.++.++ |++||+||||+|.... ..++..|++|+|||++.+.......
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------ 164 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------ 164 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------
Confidence 443 234577777888887 9999999999998643 4567899999999975433210000
Q ss_pred CCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcc
Q 004301 363 LPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHL 442 (762)
Q Consensus 363 ~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 442 (762)
|...
T Consensus 165 ----------------------~~~~------------------------------------------------------ 168 (275)
T cd05562 165 ----------------------DPAP------------------------------------------------------ 168 (275)
T ss_pred ----------------------cccc------------------------------------------------------
Confidence 0000
Q ss_pred cceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC-cEEecccCCCC
Q 004301 443 LPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV-NILAGWSGAVG 521 (762)
Q Consensus 443 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~ 521 (762)
.......+.||++||+.. +++||||+|||+ ++.+++..+
T Consensus 169 ------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~~-- 208 (275)
T cd05562 169 ------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGD-- 208 (275)
T ss_pred ------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcCC--
Confidence 000113456788999876 789999999975 445544432
Q ss_pred CCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCC
Q 004301 522 PTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601 (762)
Q Consensus 522 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 601 (762)
.|..++|||||||||||++|||+|++|+|+++|||++|++||+++. .++.+..||||
T Consensus 209 -----------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G~G 265 (275)
T cd05562 209 -----------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASGSG 265 (275)
T ss_pred -----------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcCcC
Confidence 7999999999999999999999999999999999999999999873 23455699999
Q ss_pred CcCccccCC
Q 004301 602 HVNPVSALN 610 (762)
Q Consensus 602 ~vd~~~A~~ 610 (762)
+||+.+|++
T Consensus 266 ~vda~~Av~ 274 (275)
T cd05562 266 LVDADRAVA 274 (275)
T ss_pred cccHHHHhh
Confidence 999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=404.91 Aligned_cols=243 Identities=26% Similarity=0.352 Sum_probs=197.3
Q ss_pred CcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCC
Q 004301 123 FPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKES 202 (762)
Q Consensus 123 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 202 (762)
|..+++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 889999999999999999999999997410 0001110 1
Q ss_pred CCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEcc
Q 004301 203 KSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSL 281 (762)
Q Consensus 203 ~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 281 (762)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++|+||++++++||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 1345778999999999999742 137999999999999998776 6677899999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeec
Q 004301 282 GGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYK 359 (762)
Q Consensus 282 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~ 359 (762)
|... ....++..++.++.++|++||+||||+|+... ..+...+++|+|||.+.
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 162 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF----------------------- 162 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-----------------------
Confidence 9753 23345666677888999999999999997543 34567788999997421
Q ss_pred CCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccccc
Q 004301 360 GDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVAD 439 (762)
Q Consensus 360 ~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 439 (762)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCC----CCCCCCCcEEecCCcEEec
Q 004301 440 AHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSI----TPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 440 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa 515 (762)
.+.++.|||+|++.. ..+++||||.|||.+|+++
T Consensus 163 ------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 163 ------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred ------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 125788999996531 1378899999999999987
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP----EWSPAAIRSALMTTAYVSY 578 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~~sp~~ik~~L~~TA~~~~ 578 (762)
.... .|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 201 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 6543 788999999999999999999999998 7999999999999999874
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=412.14 Aligned_cols=286 Identities=31% Similarity=0.345 Sum_probs=190.6
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
|+||+|||||||||.+||+|.++... .|.-. |+ +..++ ..+++.... ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~------~d---~~~~~------~~g~d~~~~------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLK------FD---YKAYL------LPGMDKWGG------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccccc------cC---cCCCc------cCCcCCCCC------ccCCCCCc
Confidence 89999999999999999999753110 01000 00 00011 111111111 01236789
Q ss_pred CCChhhHHHhhcccCCCCCccccc-cCcceeeeccCceEEEEEEEecCC-CCHHHHHH-------HHHHHH--hCCCcEE
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGY-AAGTARGMATRARVAAYKVCWVGG-CFSSDILA-------AIEQAI--DDNVNVL 277 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVI 277 (762)
+||||||||||||+.....+.+++ ....+.||||+|+|+++|+|...+ .....+.. +++|++ +++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999999986443332221 123458999999999999997544 32222333 344443 6799999
Q ss_pred EEccCCCCCCCc-----ccHHHHHHHH-HHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 278 SMSLGGGTSDYY-----KDSVAIGAFA-AMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 278 n~SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
|||||....... .+..+..... +.++|+++|+||||+|+... ..++.++++|+|||++..+..+...
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~----- 210 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL----- 210 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-----
Confidence 999998542211 1222222222 24899999999999998643 4567889999999975332100000
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
...
T Consensus 211 --------------------~~~--------------------------------------------------------- 213 (311)
T cd07497 211 --------------------FGY--------------------------------------------------------- 213 (311)
T ss_pred --------------------hcc---------------------------------------------------------
Confidence 000
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.....+.+++||||||+.+ +++||||+|||
T Consensus 214 ------------------------------------------------~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG 243 (311)
T cd07497 214 ------------------------------------------------LPGGSGDVVSWSSRGPSIA--GDPKPDLAAIG 243 (311)
T ss_pred ------------------------------------------------ccCCCCCccccccCCCCcc--cCCCCceeccC
Confidence 0012347899999999987 89999999999
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004301 510 VNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP------EWSPAAIRSALMTTA 574 (762)
Q Consensus 510 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~~sp~~ik~~L~~TA 574 (762)
++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999876542100 011123799999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=419.22 Aligned_cols=311 Identities=29% Similarity=0.372 Sum_probs=233.3
Q ss_pred CCcCCC-CCCCcEEEEEcccCCCCCCCCCCCCCCCCCC-----CcccccccCCCCCCCCCCceeeeeeeccccccccCCC
Q 004301 122 LFPTSG-SASEVIVGVLDTGVWPESKSFDDTGLGPVPS-----SWKGACETGTNFNASNCNRKLIGARYFARGYEATLGP 195 (762)
Q Consensus 122 ~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 195 (762)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. -...+++.+++..++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--- 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDDI--- 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCcc---
Confidence 688887 9999999999999999999998754332111 11111111 12235677888888887653211
Q ss_pred CCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEec--CC-CCHHHHHHHHHHHHhC
Q 004301 196 IDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWV--GG-CFSSDILAAIEQAIDD 272 (762)
Q Consensus 196 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~ 272 (762)
....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+ .....+++|++++++.
T Consensus 76 -------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~ 143 (346)
T cd07475 76 -------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKL 143 (346)
T ss_pred -------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHc
Confidence 11457889999999999998654221 123589999999999999974 33 7788899999999999
Q ss_pred CCcEEEEccCCCCCC-CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc----------------cCCCCceEEecCCC
Q 004301 273 NVNVLSMSLGGGTSD-YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL----------------SNVAPWITTVGAGT 335 (762)
Q Consensus 273 g~dVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVgA~~ 335 (762)
|++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+..
T Consensus 144 g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~ 223 (346)
T cd07475 144 GADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN 223 (346)
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecc
Confidence 999999999986532 4456677788889999999999999998654321 12334555555432
Q ss_pred CCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHH
Q 004301 336 LDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAV 415 (762)
Q Consensus 336 ~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~ 415 (762)
..
T Consensus 224 ~~------------------------------------------------------------------------------ 225 (346)
T cd07475 224 KK------------------------------------------------------------------------------ 225 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 416 VKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 416 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
........++.||+|||+.
T Consensus 226 -------------------------------------------------------------~~~~~~~~~~~~S~~G~~~ 244 (346)
T cd07475 226 -------------------------------------------------------------VPNPNGGQMSGFSSWGPTP 244 (346)
T ss_pred -------------------------------------------------------------cCCCCCCccCCCcCCCCCc
Confidence 0012234678999999998
Q ss_pred CCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhh----CCCCCHHH----HH
Q 004301 496 ITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPAA----IR 567 (762)
Q Consensus 496 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~sp~~----ik 567 (762)
. .++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+ ||
T Consensus 245 ~--~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik 309 (346)
T cd07475 245 D--LDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVK 309 (346)
T ss_pred c--cCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 6 799999999999999987664 7899999999999999999999998 79999876 78
Q ss_pred HHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCC
Q 004301 568 SALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 568 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
.+|++||.+... ......++.+..+|+|+||+.+|++
T Consensus 310 ~~l~~ta~~~~~------~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 310 NLLMNTATPPLD------SEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHhcCCcccc------cCCCCccCCccccCcchhcHHHhhC
Confidence 899999985321 1122566788899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-48 Score=429.95 Aligned_cols=406 Identities=24% Similarity=0.294 Sum_probs=242.3
Q ss_pred CCCCCcEEEEEcccCCCCCCCCCC-CCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccc-ccccCCCCCCCCCCCC
Q 004301 127 GSASEVIVGVLDTGVWPESKSFDD-TGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG-YEATLGPIDESKESKS 204 (762)
Q Consensus 127 ~~G~Gv~VgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~-~~~~~~~~~~~~~~~~ 204 (762)
++|+||+|||||||||+.||+|++ +|.+|+...|++....+..-. ...+...+... .+.... ...+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~-~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALA-SDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHh-cCCccccCc
Confidence 479999999999999999999996 678899999998876543211 11111111110 000000 011222234
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-----------CCHHHHHHHHHHHHhC-
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-----------CFSSDILAAIEQAIDD- 272 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~- 272 (762)
..|..||||||||||||+..++. .+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 57899999999999999965422 248999999999999998765 4688999999999874
Q ss_pred ----CCcEEEEccCCCC-CCCcccHHHHHHHHHHhc-CCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEc
Q 004301 273 ----NVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEK-GILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 273 ----g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
.+.|||||||... +....+.++.++..+.++ |++||+||||+|....+..+.. ... ...-...+.+
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~~~----~~~~~ie~~v 217 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----VPN----GETKTVELNV 217 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----ccC----CceEEEEEEE
Confidence 4789999999865 334456777777777766 9999999999998655443210 000 0000112222
Q ss_pred CCCcEEEeEeeecCCC---------CCCceeeEEEccCCCC------CCCCCcccCCCCCccccCCcEEEEeCCCchhhh
Q 004301 347 GNGQNYSGVSLYKGDG---------LPGKLLPFVYAGNASN------ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQ 411 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~---------~~~~~~p~v~~~~~~~------~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~ 411 (762)
+.+..-....+|...+ +.....+.+....... -.....|.... .+....|.-.+..+
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~------- 289 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR------- 289 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE-------
Confidence 2222211122222110 0000000000000000 00000111100 11122222222111
Q ss_pred HHHHHHHcCceEEEEeecCC-CCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEeccee------ecC-cCCC
Q 004301 412 KGAVVKAAGGLGMVLANTES-NGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTK------VGV-EPSP 483 (762)
Q Consensus 412 ~~~~~~~~Ga~g~i~~n~~~-~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~------~~~-~~~~ 483 (762)
..+ ...|-.-+.++.... .+. -..|+|.-.+...+..++ +. .+..+++.+.+. ... ...+
T Consensus 290 -~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~--~~~~tit~Pa~~~~vitVga~~~~~~ 357 (455)
T cd07478 290 -FKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EP--DPYTTLTIPGTARSVITVGAYNQNNN 357 (455)
T ss_pred -ccC-CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cC--CCCceEecCCCCCCcEEEEEEeCCCC
Confidence 011 122344444443321 111 134555443333322222 11 223334333221 111 2234
Q ss_pred eeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-----
Q 004301 484 VVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH----- 558 (762)
Q Consensus 484 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----- 558 (762)
.++.||||||+.+ +++||||+|||++|+++++.+ .|..++|||||||||||++|||+|.+
T Consensus 358 ~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~ 422 (455)
T cd07478 358 SIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGN 422 (455)
T ss_pred cccCccCCCcCCC--CCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccC
Confidence 6999999999987 899999999999999999864 89999999999999999999999875
Q ss_pred -CCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCC
Q 004301 559 -PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601 (762)
Q Consensus 559 -p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 601 (762)
|.|++++||++|++||+++. +..+++++||||
T Consensus 423 ~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 423 DPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 345677899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=405.41 Aligned_cols=294 Identities=31% Similarity=0.390 Sum_probs=227.9
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
+.+|..+++|+||+|||||+|||++||+|.++-.. +.++.+.++|...... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 56899999999999999999999999999864110 1122333333322100 00112
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLS 278 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn 278 (762)
.+...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|++++.+ .....+++++++|++++++|||
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn 129 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVIT 129 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 23345677899999999999998643 12 48999999999999998666 6677789999999999999999
Q ss_pred EccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeE
Q 004301 279 MSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355 (762)
Q Consensus 279 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (762)
||||.... +..+.+..++.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 130 ~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 130 ASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred eCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 99998542 23366777777899999999999999987543 3355677888888621
Q ss_pred eeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc
Q 004301 356 SLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435 (762)
Q Consensus 356 s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 435 (762)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 004301 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 436 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 515 (762)
+.||++||+.+ ...||||+|||++++++
T Consensus 189 --------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~ 216 (312)
T cd07489 189 --------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILST 216 (312)
T ss_pred --------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEe
Confidence 46899999987 78999999999999999
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccccCCcccccccCCCCCC
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH-PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAST 594 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 594 (762)
++...+ .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..-.. ...++
T Consensus 217 ~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~~ 282 (312)
T cd07489 217 YPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLAP 282 (312)
T ss_pred eeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCCC
Confidence 877522 58999999999999999999999999 9999999999999999987543221111 11356
Q ss_pred CCCCCCCCcCccccCCCCe
Q 004301 595 PFDHGAGHVNPVSALNPGL 613 (762)
Q Consensus 595 ~~~~G~G~vd~~~A~~~~l 613 (762)
...+|||+||+.+|++..-
T Consensus 283 ~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 283 VAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HhhcCcceeeHHHHhcCCc
Confidence 6799999999999998543
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=392.65 Aligned_cols=246 Identities=27% Similarity=0.352 Sum_probs=202.5
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|..+++|+||+|||||+|||.+||+|++..+.+... +.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc-------------c
Confidence 7999999999999999999999999998642111000 000 0
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEE
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSM 279 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 279 (762)
.....|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 113456789999999999987421 247999999999999998654 44778999999999999999999
Q ss_pred ccCCCC-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeee
Q 004301 280 SLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLY 358 (762)
Q Consensus 280 SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~ 358 (762)
|||... .......+..++.+|.++|+++|+||||+|.....+++..|++|+|||++.
T Consensus 113 S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 170 (267)
T cd07476 113 SGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------- 170 (267)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------
Confidence 999754 233456678888899999999999999999887788888999999998421
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccc
Q 004301 359 KGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438 (762)
Q Consensus 359 ~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 438 (762)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccC
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSG 518 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 518 (762)
.+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 171 -------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~ 202 (267)
T cd07476 171 -------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG 202 (267)
T ss_pred -------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC
Confidence 11457899999864 378999999999998876
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccc
Q 004301 519 AVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE----WSPAAIRSALMTTAYVSYK 579 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----~sp~~ik~~L~~TA~~~~~ 579 (762)
+ .|..++|||||||||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 203 ~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 203 G-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred C-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 4 7999999999999999999999999887 8999999999999999854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=392.79 Aligned_cols=269 Identities=28% Similarity=0.373 Sum_probs=189.8
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCC-CCCCcccccccCCCCCCCCCCceeeeeeecccccccc----CCCCC------C
Q 004301 130 SEVIVGVLDTGVWPESKSFDDTGLGP-VPSSWKGACETGTNFNASNCNRKLIGARYFARGYEAT----LGPID------E 198 (762)
Q Consensus 130 ~Gv~VgVIDtGid~~Hp~f~~~g~~~-~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~----~~~~~------~ 198 (762)
|+|+|||||||||++||+|++..... .....+|....+.+|... +++++|...+... +.+.+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998752110 000112222222222211 2333333211000 00000 0
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLS 278 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 278 (762)
+.+...+.+..+|||||||||+|...+..+ +.||||+|+|+.+|++........++++||+||+++|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 112234557899999999999998644322 489999999999999865446778999999999999999999
Q ss_pred EccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC---cc--------CCCCceEEecCCCCCCccceeEEcC
Q 004301 279 MSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS---LS--------NVAPWITTVGAGTLDRDFPAFVSLG 347 (762)
Q Consensus 279 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~~ 347 (762)
||||..... ....+..++.+|.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--------- 216 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--------- 216 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---------
Confidence 999975322 23456677778999999999999999865321 11 1234556666532111
Q ss_pred CCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEe
Q 004301 348 NGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 348 ~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 427 (762)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEe
Q 004301 428 NTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIA 507 (762)
Q Consensus 428 n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 507 (762)
....++.||++|+.. |||.|
T Consensus 217 -----------------------------------------------------~~~~~~~~Sn~G~~~-------vdi~A 236 (291)
T cd07483 217 -----------------------------------------------------ENNLVANFSNYGKKN-------VDVFA 236 (291)
T ss_pred -----------------------------------------------------CcccccccCCCCCCc-------eEEEe
Confidence 011468899999753 49999
Q ss_pred cCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 508 PGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 508 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 237 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 237 PGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999997764 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=390.28 Aligned_cols=289 Identities=39% Similarity=0.560 Sum_probs=216.6
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCC-C-CCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLG-P-IDESKESKSPR 206 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~-~-~~~~~~~~~~~ 206 (762)
|+||+|||||+||+++||+|.+.. ..+.+++..++|......... . ...........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 123345555555432111000 0 00000112245
Q ss_pred CCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 004301 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGT 285 (762)
Q Consensus 207 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 285 (762)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 68999999999999985442 2348999999999999998554 78889999999999999999999999754
Q ss_pred CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc--cCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCC
Q 004301 286 SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL--SNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGL 363 (762)
Q Consensus 286 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~ 363 (762)
.. ..+.+..++.++.++|+++|+||||+|...... +...+++|+|||+.....
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 32 346677788899999999999999998765543 567889999998531100
Q ss_pred CCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCccc
Q 004301 364 PGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLL 443 (762)
Q Consensus 364 ~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 443 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccC-CCCCCCCCCCCCCcEEecCCcEEecccCCCCC
Q 004301 444 PATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSS-RGPNSITPELLKPDMIAPGVNILAGWSGAVGP 522 (762)
Q Consensus 444 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs-~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 522 (762)
........|++ .|+... ..+||||+|||++|+++++...
T Consensus 187 ------------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 187 ------------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred ------------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCC--
Confidence 00113344444 455554 7899999999999999987631
Q ss_pred CCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCC
Q 004301 523 TGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGH 602 (762)
Q Consensus 523 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 602 (762)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+
T Consensus 227 ---------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G~ 289 (295)
T cd07474 227 ---------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAGR 289 (295)
T ss_pred ---------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcce
Confidence 278999999999999999999999999999999999999999998764331 223456999999
Q ss_pred cCcccc
Q 004301 603 VNPVSA 608 (762)
Q Consensus 603 vd~~~A 608 (762)
||+.+|
T Consensus 290 l~~~~A 295 (295)
T cd07474 290 VDALRA 295 (295)
T ss_pred eccccC
Confidence 999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=382.17 Aligned_cols=234 Identities=27% Similarity=0.370 Sum_probs=191.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004301 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGH 211 (762)
Q Consensus 132 v~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 211 (762)
|+|||||||||.+||+|+++- +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999997531 10011100 125567899
Q ss_pred hhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC----CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 004301 212 GTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG----CFSSDILAAIEQAIDDNVNVLSMSLGGGTSD 287 (762)
Q Consensus 212 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 287 (762)
||||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+..
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 5999999999999998642 67788999999999999999999999743
Q ss_pred CcccHHHHHHHHHHhcCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCc
Q 004301 288 YYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGK 366 (762)
Q Consensus 288 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~ 366 (762)
...+..++.++.++|+++|+||||+|... ..+++..|++|+|++++.
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34566777799999999999999999764 356777889999987421
Q ss_pred eeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceE
Q 004301 367 LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPAT 446 (762)
Q Consensus 367 ~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 446 (762)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCC
Q 004301 447 AVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLA 526 (762)
Q Consensus 447 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 526 (762)
.+.+++||++|+.. ||+|||++|+++.+.+
T Consensus 154 -----------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------- 183 (239)
T cd05561 154 -----------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------- 183 (239)
T ss_pred -----------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC-------
Confidence 12567899999876 9999999999977654
Q ss_pred CCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCC
Q 004301 527 TDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601 (762)
Q Consensus 527 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 601 (762)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 ------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 184 ------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred ------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999873 44555689998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=379.12 Aligned_cols=247 Identities=32% Similarity=0.418 Sum_probs=195.2
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
|+||+|||||+||+++||+|.+. |++..... +...+++.+ .......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~-----------------~~~~~~~~d----~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS-----------------ADHDYNWFD----PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC-----------------ccccccccc----CCCCCCCCCCC
Confidence 89999999999999999999864 11110000 000111000 01112346788
Q ss_pred CCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh------------CCCcE
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID------------DNVNV 276 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dV 276 (762)
.+|||||||||+|..... ...||||+|+|+.+|+++..++...+++++++++++ .|++|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 999999999999874322 127999999999999998877888899999999975 78999
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEE
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 353 (762)
||||||.... ....+..++..+.++|++||+||||++.... .++...|++|+|||.+.
T Consensus 123 in~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------- 183 (264)
T cd07481 123 INNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------- 183 (264)
T ss_pred EEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------
Confidence 9999998643 2345556666888999999999999986644 25677889999998432
Q ss_pred eEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC
Q 004301 354 GVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG 433 (762)
Q Consensus 354 g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 433 (762)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEE
Q 004301 434 EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNIL 513 (762)
Q Consensus 434 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 513 (762)
.+.++.||++||... +++||||+|||.+|+
T Consensus 184 ------------------------------------------------~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i~ 213 (264)
T cd07481 184 ------------------------------------------------NDVLADFSSRGPSTY--GRIKPDISAPGVNIR 213 (264)
T ss_pred ------------------------------------------------CCCCccccCCCCCCC--CCcCceEEECCCCeE
Confidence 125688999999986 799999999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004301 514 AGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE--WSPAAIRSALMTTAY 575 (762)
Q Consensus 514 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--~sp~~ik~~L~~TA~ 575 (762)
++++.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 214 s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 214 SAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 998764 7899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=381.17 Aligned_cols=325 Identities=30% Similarity=0.444 Sum_probs=257.5
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCC---CC----------------cEEEEEc---ceeeEEEEEcCHHHH
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVSD---SA----------------EILYTYD---NVIHGFSTQLTREEA 85 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~----------------~v~~~y~---~~~~g~s~~~~~~~~ 85 (762)
.+.+|||.|++.........|.+++++....... .. .+.+.|. .+++|..-..+.+-+
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 4789999999877766777777777655432211 00 1333333 267788888899999
Q ss_pred HHHhcCCCeEEEEeCceeccCC-----CCCCcccCCcCCCC-------CC----cCCCCCCCcEEEEEcccCCCCCCCCC
Q 004301 86 ESLEQRPGILSVLPELKYELHT-----TRSPEFLGLDKSAN-------LF----PTSGSASEVIVGVLDTGVWPESKSFD 149 (762)
Q Consensus 86 ~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~Gv~VgVIDtGid~~Hp~f~ 149 (762)
..++..|-++.++++...+... .+....|||.++.. -| ..-..|+||...|+||||+..||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998877654 44555678766422 11 12347999999999999999999999
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCcc
Q 004301 150 DTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASL 229 (762)
Q Consensus 150 ~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~ 229 (762)
++ ..| |..+.. .....|++||||||||+|++..
T Consensus 239 gR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt------ 271 (501)
T KOG1153|consen 239 GR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT------ 271 (501)
T ss_pred cc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc------
Confidence 76 334 222110 1125789999999999999885
Q ss_pred ccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC---------CCcEEEEccCCCCCCCcccHHHHHHHH
Q 004301 230 FGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD---------NVNVLSMSLGGGTSDYYKDSVAIGAFA 299 (762)
Q Consensus 230 ~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a~~~ 299 (762)
.|||.+++|+++||++++| ++.+++++++|++++. +..|.|||+|+..+ -++..|+.+
T Consensus 272 --------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~ 339 (501)
T KOG1153|consen 272 --------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNA 339 (501)
T ss_pred --------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHH
Confidence 7999999999999999998 9999999999999986 47899999999654 456677779
Q ss_pred HHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCC
Q 004301 300 AMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASN 378 (762)
Q Consensus 300 a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~ 378 (762)
|.+.|+++++||||+..+.+ +.|+.+..+|||||++..
T Consensus 340 A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------------------------- 378 (501)
T KOG1153|consen 340 ASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------------------------- 378 (501)
T ss_pred HhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------------------------
Confidence 99999999999999998876 556788999999996422
Q ss_pred CCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHH
Q 004301 379 ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKS 458 (762)
Q Consensus 379 ~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 458 (762)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeec
Q 004301 459 YLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIIS 538 (762)
Q Consensus 459 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 538 (762)
+.+|.||+||++. ||.|||++|+|+|.+... ...+.|
T Consensus 379 ------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilS 415 (501)
T KOG1153|consen 379 ------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILS 415 (501)
T ss_pred ------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheee
Confidence 2789999999999 999999999999998643 668999
Q ss_pred cccchhhhHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 004301 539 GTSMSCPHVSGLAALLKAAHPE---------WSPAAIRSALMTTAY 575 (762)
Q Consensus 539 GTSmAaP~VAG~aALl~~~~p~---------~sp~~ik~~L~~TA~ 575 (762)
|||||+|||||++|.+++.+|. .+|.++|..+..=..
T Consensus 416 GTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 416 GTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999999999883 378888887766543
|
|
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=376.41 Aligned_cols=243 Identities=32% Similarity=0.378 Sum_probs=194.9
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+||||||||+++||+|.... ..++.++.+.++|..... ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999995210 013346666666654420 01367889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG---CFSSDILAAIEQAIDDNVNVLSMSLGGGTSD 287 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 287 (762)
|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.|++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999742 2248999999999999876432 3455788999999999999999999986422
Q ss_pred Cc------------ccHHHHHHHHHHhcCCEEEEecCCCCCC---CCCccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 288 YY------------KDSVAIGAFAAMEKGILVSCSAGNAGPS---SYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 288 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
.. ...+..++..+.++|+++|+||||+|.. ...++...+++|+|||...
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 182 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------- 182 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------
Confidence 11 2356677788999999999999999987 3456778899999998421
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
.+.++.||++||+.+ +++||||+|||.++
T Consensus 183 -------------------------------------------------~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~ 211 (261)
T cd07493 183 -------------------------------------------------NGNKASFSSIGPTAD--GRLKPDVMALGTGI 211 (261)
T ss_pred -------------------------------------------------CCCCCccCCcCCCCC--CCcCCceEecCCCe
Confidence 115678999999986 89999999999999
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 212 ~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 212 YVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 8854432 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=384.91 Aligned_cols=220 Identities=26% Similarity=0.289 Sum_probs=165.6
Q ss_pred CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC---CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG---CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 206 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
.|+.+|||||||||||+..++ ..+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 477899999999999985332 2248999999999999986542 23457999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHH-HHhcCCEEEEecCCCCCCCCCcc--C-CCCceEEecCCCCCCccceeEEcCCCcEEEeEeee
Q 004301 283 GGTSDYYKDSVAIGAFA-AMEKGILVSCSAGNAGPSSYSLS--N-VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLY 358 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~ 358 (762)
..........+..++.+ +.++|+++|+||||+|+..+++. + ..+++|+|||......+....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y-------------- 319 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY-------------- 319 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc--------------
Confidence 86532222233333333 45789999999999998766543 2 468999999953222100000
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccc
Q 004301 359 KGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438 (762)
Q Consensus 359 ~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 438 (762)
..
T Consensus 320 --------------------------~~---------------------------------------------------- 321 (412)
T cd04857 320 --------------------------SL---------------------------------------------------- 321 (412)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred cCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccC
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSG 518 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 518 (762)
.....+.++.||||||+.+ +.+||||+|||+.|.+. +.
T Consensus 322 ---------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~-p~ 359 (412)
T cd04857 322 ---------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASV-PN 359 (412)
T ss_pred ---------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEc-cc
Confidence 0011236789999999997 89999999999999875 21
Q ss_pred CCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 004301 519 AVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVS 577 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~ 577 (762)
.. ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 360 ~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 360 WT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 10 12689999999999999999999975 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=373.78 Aligned_cols=262 Identities=29% Similarity=0.362 Sum_probs=200.8
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|..+++|+||+|+|||||||++||+|.+..... .+ ..+...+.... .....
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------------~~~~~~~~~~~---~~~~~ 53 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------------DPAVNGYNFVP---NVGDI 53 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------------ccccCCccccc---ccCCc
Confidence 7999999999999999999999999998641100 00 00001110000 00011
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEc
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMS 280 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S 280 (762)
.....|..||||||||||+|+..+....-|.+ .+.|+||+|+|+.+|++...+ +...++++||+|+++.|++|||||
T Consensus 54 ~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S 131 (273)
T cd07485 54 DNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNS 131 (273)
T ss_pred CCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEec
Confidence 22356788999999999999764432221221 235799999999999998765 778889999999999999999999
Q ss_pred cCCCCCCCcccHHHHHHHHHHhc-------CCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEE
Q 004301 281 LGGGTSDYYKDSVAIGAFAAMEK-------GILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353 (762)
Q Consensus 281 lG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 353 (762)
||......+...+..++..+.++ |+++|+||||++.....+++..|++|+|++++.+
T Consensus 132 ~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~---------------- 195 (273)
T cd07485 132 WGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN---------------- 195 (273)
T ss_pred CCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC----------------
Confidence 99865444556677777788888 9999999999998877778888999999985321
Q ss_pred eEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC
Q 004301 354 GVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG 433 (762)
Q Consensus 354 g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 433 (762)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC-cE
Q 004301 434 EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV-NI 512 (762)
Q Consensus 434 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I 512 (762)
+.++.||++|+.. ||+|||. .|
T Consensus 196 -------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i 218 (273)
T cd07485 196 -------------------------------------------------DNKASFSNYGRWV--------DIAAPGVGTI 218 (273)
T ss_pred -------------------------------------------------CCcCccccCCCce--------EEEeCCCCcc
Confidence 2567899999876 9999999 89
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE-WSPAAIRSALMTT 573 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-~sp~~ik~~L~~T 573 (762)
+++++.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 219 ~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 219 LSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 888765311 11237899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=369.31 Aligned_cols=256 Identities=34% Similarity=0.486 Sum_probs=203.5
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc----------cCCCCCCCC
Confidence 89999999999999999999864110 0 0010000 112245677
Q ss_pred CCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC----CCcEEEEccCC
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD----NVNVLSMSLGG 283 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 283 (762)
.+|||||||+|+|...+. .+.+.|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999986432 12248999999999999998876 6788999999999998 99999999998
Q ss_pred CCC-CCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecC
Q 004301 284 GTS-DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKG 360 (762)
Q Consensus 284 ~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~ 360 (762)
... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 653 445677888888999999999999999998775 55677899999998543221
Q ss_pred CCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccC
Q 004301 361 DGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADA 440 (762)
Q Consensus 361 ~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 440 (762)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCC
Q 004301 441 HLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAV 520 (762)
Q Consensus 441 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 520 (762)
....++.||++||+.. +++||||+|||++|+++.+...
T Consensus 176 ----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~ 213 (264)
T cd07487 176 ----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGG 213 (264)
T ss_pred ----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccc
Confidence 0014788999999987 8999999999999999865431
Q ss_pred CCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 521 GPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 521 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
.. .......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 214 ~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 214 NP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 11 1112247899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=362.44 Aligned_cols=232 Identities=38% Similarity=0.533 Sum_probs=193.7
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|..+++|+||+|||||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 667789999999999999999999999753 1111222211
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC-----CCc
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD-----NVN 275 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~d 275 (762)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++++|+++. +++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 115678899999999999863 6999999999999998875 6778899999999987 489
Q ss_pred EEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEEEe
Q 004301 276 VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSG 354 (762)
Q Consensus 276 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g 354 (762)
|||||||... ...+..++.++.++|+++|+||||+|... ...++..|++|+|||.+.+
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 9999999864 45566677789999999999999999776 4567788999999985321
Q ss_pred EeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCc
Q 004301 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGE 434 (762)
Q Consensus 355 ~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 434 (762)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEe
Q 004301 435 ELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILA 514 (762)
Q Consensus 435 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 514 (762)
+.+++||++||.. ||+|||.+|.+
T Consensus 181 ------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 181 ------------------------------------------------DARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred ------------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEe
Confidence 1467899999976 99999999999
Q ss_pred cccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004301 515 GWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYV 576 (762)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~ 576 (762)
+..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 877421 278999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=362.13 Aligned_cols=241 Identities=34% Similarity=0.453 Sum_probs=200.4
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+ +|+||+|||||+||+++||+|... ++...+++...
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 35689888 999999999999999999998432 12222222221
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 277 (762)
...+.|..+|||||||||++...+.. .+.|+||+|+|+.+|+++..+ +...++++||+++++.|++||
T Consensus 61 ---~~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ii 129 (260)
T cd07484 61 ---DSDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVI 129 (260)
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEE
Confidence 11256788999999999998753322 248999999999999998765 778899999999999999999
Q ss_pred EEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 278 SMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 278 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
|||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 130 n~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 130 NLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred EecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 99999854 3456777777889999999999999999888889999999999984321
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
+.++.||++|+.. |++|||.+|+++.+
T Consensus 187 ---------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~ 213 (260)
T cd07484 187 ---------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTP 213 (260)
T ss_pred ---------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecC
Confidence 1457889999865 99999999999876
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVS 577 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~ 577 (762)
.. .|..++|||||||+|||++||+++++| +++.+||++|++||+++
T Consensus 214 ~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 DG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 63 799999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=365.31 Aligned_cols=207 Identities=32% Similarity=0.443 Sum_probs=167.9
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHH----------hCC
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAI----------DDN 273 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 273 (762)
...+..+|||||||||+|...+.. | +.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 355788999999999999864322 2 3799999999999999887778899999999998 457
Q ss_pred CcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 274 VNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 274 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
++|||||||..... ...+..++..+.++|++||+||||++... ..+++..+++|+|||++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 89999999985432 45667777789999999999999999876 5677888999999985321
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
+.+++||++|+.. ||.|||++|
T Consensus 201 --------------------------------------------------~~~~~~S~~g~~v--------di~apG~~i 222 (285)
T cd07496 201 --------------------------------------------------GQRASYSNYGPAV--------DVSAPGGDC 222 (285)
T ss_pred --------------------------------------------------CCcccccCCCCCC--------CEEeCCCCc
Confidence 2568899999976 999999999
Q ss_pred EecccCCCCCC--CCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 513 LAGWSGAVGPT--GLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 513 ~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 223 ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 98876532110 00111122478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=370.27 Aligned_cols=262 Identities=29% Similarity=0.255 Sum_probs=185.7
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCCh
Q 004301 133 IVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHG 212 (762)
Q Consensus 133 ~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 212 (762)
+|||||||||.+||+|.+.- .....+... ...+.|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999997530 000011000 00156889999
Q ss_pred hhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-----CCHHHHHHHHHHHHhCC---CcEEEEccCCC
Q 004301 213 THTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-----CFSSDILAAIEQAIDDN---VNVLSMSLGGG 284 (762)
Q Consensus 213 ThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~~ 284 (762)
|||||||++..... ....|+||+|+|+.+|++.+.| ....++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 99999999764331 1237999999999999998763 56678999999999853 49999999986
Q ss_pred CCCCc--ccHHHHHHH-HHHhcCCEEEEecCCCCCCCCC------------ccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 285 TSDYY--KDSVAIGAF-AAMEKGILVSCSAGNAGPSSYS------------LSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 285 ~~~~~--~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
..... ...+..++. .+.++|++||+||||++..... .++.++++|+|||.+.+......-
T Consensus 114 ~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s----- 188 (291)
T cd04847 114 LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA----- 188 (291)
T ss_pred CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-----
Confidence 53221 123444443 3568999999999999987643 245678999999975543210000
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
.+
T Consensus 189 -------~~----------------------------------------------------------------------- 190 (291)
T cd04847 189 -------RY----------------------------------------------------------------------- 190 (291)
T ss_pred -------cc-----------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
+.......+.||+|||... +.+||||+|||
T Consensus 191 ------------------------------------------------~~~~~~~~~~fs~~Gp~~~--~~~KPDl~apG 220 (291)
T cd04847 191 ------------------------------------------------SAVGPAPAGATTSSGPGSP--GPIKPDVVAFG 220 (291)
T ss_pred ------------------------------------------------cccccccCCCccccCCCCC--CCcCCcEEeeC
Confidence 0000012334999999987 89999999999
Q ss_pred CcEEecccCCCCC-----CCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 510 VNILAGWSGAVGP-----TGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 510 ~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 221 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 221 GNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9998864421100 00001112347999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=358.26 Aligned_cols=253 Identities=36% Similarity=0.446 Sum_probs=187.3
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+|||||+|||++||+|.+. +...++|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11111121110 011223567889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCcc
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYK 290 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 290 (762)
|||||||||+|+..+ +...||||+|+|+.+|++...++...++++||+|+++.+++|||||||..... .
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~ 113 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--E 113 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--C
Confidence 999999999998641 22479999999999999987777889999999999999999999999986533 4
Q ss_pred cHHHHHHHHHHh-cCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceee
Q 004301 291 DSVAIGAFAAME-KGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLP 369 (762)
Q Consensus 291 ~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p 369 (762)
+.+..++..+.+ +|++||+||||+|......++..+++|+|||++.+........
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------------ 169 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------------ 169 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC------------------------
Confidence 455555544444 6999999999999887788888999999999754332000000
Q ss_pred EEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEc
Q 004301 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVG 449 (762)
Q Consensus 370 ~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 449 (762)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCC
Q 004301 450 QKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDS 529 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 529 (762)
........++.+|... ....|||++|||.+|+++.... .
T Consensus 170 -------------------------------~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~ 208 (254)
T cd07490 170 -------------------------------FGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------N 208 (254)
T ss_pred -------------------------------CcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------C
Confidence 0001112223333332 2568999999999999865221 1
Q ss_pred cccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 530 RRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 530 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 209 ~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1237999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=364.28 Aligned_cols=251 Identities=26% Similarity=0.364 Sum_probs=182.7
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|+++++|+||+||||||||+..|| |..+++ .+. + .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC----------
Confidence 3569999999999999999999999898 754311 000 0 00000
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLS 278 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn 278 (762)
......|+.||||||||++ .||||+|+|+.+|++++ ...++++||+||+++|++|||
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn 109 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIIS 109 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEE
Confidence 0123567889999999865 59999999999999864 566789999999999999999
Q ss_pred EccCCCCCC----------CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCC
Q 004301 279 MSLGGGTSD----------YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGN 348 (762)
Q Consensus 279 ~SlG~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 348 (762)
||||..... .....+..++.+|.++|++||+||||++. .+|+..|++|+|||++.+..
T Consensus 110 ~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--------- 177 (298)
T cd07494 110 NSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--------- 177 (298)
T ss_pred eecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------
Confidence 999985421 12345777888899999999999999874 56889999999999643221
Q ss_pred CcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEee
Q 004301 349 GQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLAN 428 (762)
Q Consensus 349 g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 428 (762)
+..
T Consensus 178 g~~----------------------------------------------------------------------------- 180 (298)
T cd07494 178 GAR----------------------------------------------------------------------------- 180 (298)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcE---
Q 004301 429 TESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDM--- 505 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI--- 505 (762)
......+.|++. ..+++.|||+
T Consensus 181 ---------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~ 205 (298)
T cd07494 181 ---------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGL 205 (298)
T ss_pred ---------------------------------------------------cccccccCcccc----cCCCCccCccccc
Confidence 000000111111 1235667776
Q ss_pred -------------EecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 004301 506 -------------IAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMT 572 (762)
Q Consensus 506 -------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~ 572 (762)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|++
T Consensus 206 ~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ 280 (298)
T cd07494 206 VGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNK 280 (298)
T ss_pred cCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4799998765432100 0011247999999999999999999999999999999999999999
Q ss_pred cccccc
Q 004301 573 TAYVSY 578 (762)
Q Consensus 573 TA~~~~ 578 (762)
||+++.
T Consensus 281 ta~~~~ 286 (298)
T cd07494 281 TARDVT 286 (298)
T ss_pred hCcccC
Confidence 999874
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=362.46 Aligned_cols=277 Identities=31% Similarity=0.374 Sum_probs=200.5
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004301 125 TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKS 204 (762)
Q Consensus 125 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 58899999999999999999999976421 0001 12333433322211 1
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
..|..+|||||||||+|+..+.... ..+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 2378999999999999986543211 1248999999999999998765 55667889999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHH-h-cCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 283 GGTSDYYKDSVAIGAFAAM-E-KGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
......+ .....++.++. + +|+++|+||||+|.... ..++..+++|+|||++.......
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------------- 188 (293)
T cd04842 125 SPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------------- 188 (293)
T ss_pred CCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------------
Confidence 8654212 22333333333 3 89999999999998765 66778899999999755432000
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
..|..
T Consensus 189 -------------------------~~~~~-------------------------------------------------- 193 (293)
T cd04842 189 -------------------------EGGLG-------------------------------------------------- 193 (293)
T ss_pred -------------------------ccccc--------------------------------------------------
Confidence 00000
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.......++.||++||+.. +++||||+|||++|+++.+
T Consensus 194 ----------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~ 231 (293)
T cd04842 194 ----------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARS 231 (293)
T ss_pred ----------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccC
Confidence 0022336899999999986 8999999999999999875
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH-----P---EWSPAAIRSALMTTAY 575 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~~sp~~ik~~L~~TA~ 575 (762)
.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 232 ~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 232 GGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 5300 011122478999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=349.04 Aligned_cols=239 Identities=31% Similarity=0.422 Sum_probs=188.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004301 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGH 211 (762)
Q Consensus 132 v~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 211 (762)
|+|||||+||+++||+|.+.. +++..+.+.. ....+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999998520 0000011110 01135678899
Q ss_pred hhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCC-CCc
Q 004301 212 GTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTS-DYY 289 (762)
Q Consensus 212 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~-~~~ 289 (762)
||||||||+|+..+.. .+.|+||+|+|+.+|+++..+ +...++.++++|+++.+++|||||||.... ...
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999999999853322 248999999999999998765 678889999999999999999999998653 334
Q ss_pred ccHHHHHHHHHHh-cCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCcee
Q 004301 290 KDSVAIGAFAAME-KGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLL 368 (762)
Q Consensus 290 ~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~ 368 (762)
...+..++.++.+ +|+++|+||||+|......++..+++|+|||.+..
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------- 163 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------- 163 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------
Confidence 5667777778888 99999999999998877778889999999985321
Q ss_pred eEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEE
Q 004301 369 PFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAV 448 (762)
Q Consensus 369 p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 448 (762)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCC
Q 004301 449 GQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATD 528 (762)
Q Consensus 449 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 528 (762)
+.+++||++||.. |++|||.++.......... ..
T Consensus 164 ----------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~ 197 (242)
T cd07498 164 ----------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GD 197 (242)
T ss_pred ----------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----cc
Confidence 1467899999976 9999999998875442111 11
Q ss_pred CcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 529 SRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 529 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.....|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 198 ~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 198 YPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 122478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=358.28 Aligned_cols=264 Identities=28% Similarity=0.356 Sum_probs=183.3
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCC
Q 004301 124 PTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESK 203 (762)
Q Consensus 124 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
..+++|+||+|||||+|||.+||+|.+... ..++|... .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 457899999999999999999999975311 11112111 1
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
.+.|..||||||||||+|+..+ +...||||+|+|+.+|++...+ +...++++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467889999999999997543 1236999999999999997655 67778999999999999999999999
Q ss_pred CCCCC----------CcccHHHHHHHHH---------------HhcCCEEEEecCCCCCCCCCcc-----CCCCceEEec
Q 004301 283 GGTSD----------YYKDSVAIGAFAA---------------MEKGILVSCSAGNAGPSSYSLS-----NVAPWITTVG 332 (762)
Q Consensus 283 ~~~~~----------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVg 332 (762)
..... .....+......+ .++|++||+||||++....... ...+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 85411 1112222222233 6799999999999986543221 1112222222
Q ss_pred CCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhH
Q 004301 333 AGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQK 412 (762)
Q Consensus 333 A~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~ 412 (762)
+...
T Consensus 192 ~V~~---------------------------------------------------------------------------- 195 (297)
T cd07480 192 AVGA---------------------------------------------------------------------------- 195 (297)
T ss_pred EECC----------------------------------------------------------------------------
Confidence 2110
Q ss_pred HHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCC
Q 004301 413 GAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRG 492 (762)
Q Consensus 413 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 492 (762)
.+....|+++.
T Consensus 196 ---------------------------------------------------------------------~~~~~~~~~~~ 206 (297)
T cd07480 196 ---------------------------------------------------------------------LGRTGNFSAVA 206 (297)
T ss_pred ---------------------------------------------------------------------CCCCCCccccC
Confidence 00112233333
Q ss_pred CCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 004301 493 PNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMT 572 (762)
Q Consensus 493 p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~ 572 (762)
+. ...||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+.
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 22 235789999999999988764 8999999999999999999999999999999888888874
Q ss_pred cccccccCCcccccccCCCCCCCCCCCCCCcCcc
Q 004301 573 TAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPV 606 (762)
Q Consensus 573 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~ 606 (762)
......... ......+.++|+|++++.
T Consensus 270 ~l~~~~~~~-------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 270 RLTAARTTQ-------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHhhcccCC-------CCCCCChhhcCCceeecC
Confidence 322210000 023345568999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=353.74 Aligned_cols=244 Identities=24% Similarity=0.275 Sum_probs=176.6
Q ss_pred CCCCcCC-CCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 120 ANLFPTS-GSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 120 ~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
..+|+.. ..|+||+|+|||+|||.+||+|.++... ...+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 4578764 4599999999999999999999864110 0000
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh----CCC
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID----DNV 274 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~ 274 (762)
..+.|+++|||||||||||..+ .+| +.||||+|+|+.+|+++ .++++++|.+|++ .++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v 106 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDV 106 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCE
Confidence 0145788999999999999631 122 37999999999999985 3456777777776 356
Q ss_pred cEEEEccCCCCCC------CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc------------c-CCCCceEEecCCC
Q 004301 275 NVLSMSLGGGTSD------YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL------------S-NVAPWITTVGAGT 335 (762)
Q Consensus 275 dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVgA~~ 335 (762)
.+||||||..... .....+..++.+|.++|+++|+||||++...... + ...|++|+|||++
T Consensus 107 ~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~ 186 (277)
T cd04843 107 ILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGS 186 (277)
T ss_pred EEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEecc
Confidence 7899999986421 1234455677788899999999999998653211 1 1234677777642
Q ss_pred CCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHH
Q 004301 336 LDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAV 415 (762)
Q Consensus 336 ~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~ 415 (762)
.+.
T Consensus 187 ~~~----------------------------------------------------------------------------- 189 (277)
T cd04843 187 STT----------------------------------------------------------------------------- 189 (277)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 111
Q ss_pred HHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 416 VKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 416 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
...++.||++|+..
T Consensus 190 ------------------------------------------------------------------~~~~~~fSn~G~~v 203 (277)
T cd04843 190 ------------------------------------------------------------------GHTRLAFSNYGSRV 203 (277)
T ss_pred ------------------------------------------------------------------CCccccccCCCCcc
Confidence 01378999999976
Q ss_pred CCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----h-CCCCCHHHHHHHH
Q 004301 496 ITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----A-HPEWSPAAIRSAL 570 (762)
Q Consensus 496 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~~sp~~ik~~L 570 (762)
||+|||++|+++.+...... .......|..++|||||||||||++|||++ + +|+|+|+|||++|
T Consensus 204 --------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L 272 (277)
T cd04843 204 --------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELL 272 (277)
T ss_pred --------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 99999999999987642110 011112457899999999999999999975 3 4999999999999
Q ss_pred Hhccc
Q 004301 571 MTTAY 575 (762)
Q Consensus 571 ~~TA~ 575 (762)
+.|++
T Consensus 273 ~~t~~ 277 (277)
T cd04843 273 TATGT 277 (277)
T ss_pred HhcCC
Confidence 99974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=347.55 Aligned_cols=246 Identities=31% Similarity=0.497 Sum_probs=190.2
Q ss_pred CCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccc---cccCCCCCCCCCCceeeeeeeccc---cccccCCCCCCCCCCC
Q 004301 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGA---CETGTNFNASNCNRKLIGARYFAR---GYEATLGPIDESKESK 203 (762)
Q Consensus 130 ~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~---~~~~~~~~~~~~~~~~ 203 (762)
+||+|||||||||++||+|.++ .|... +..+.+.. . ..|.+ +++. .....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~-------~~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD----G------NGYVDDIYGWNF-------VNNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC----C------CCcccCCCcccc-------cCCCC
Confidence 6999999999999999999874 23211 11111100 0 00111 1111 11233
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
++.|..+|||||||||+|...+... +.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G 129 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWG 129 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5678899999999999998643322 47999999999999998876 78889999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC---CCccC--CCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 283 GGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS---YSLSN--VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
.... ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 130 ~~~~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~--------------------- 185 (259)
T cd07473 130 GGGP---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS--------------------- 185 (259)
T ss_pred CCCC---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC---------------------
Confidence 8543 45677777799999999999999998763 23343 3578888887432
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.+.++.||++||.. ||+.|||.++++..+
T Consensus 186 --------------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~ 214 (259)
T cd07473 186 --------------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSP 214 (259)
T ss_pred --------------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccC
Confidence 12456799999864 599999999999765
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
.. .|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 215 ~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 215 GG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 54 7999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=353.08 Aligned_cols=253 Identities=27% Similarity=0.318 Sum_probs=175.6
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
.|+|||||||||++||+|+++-.. ..+.+.....+.........+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999853100 000010000000000011111234567899
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCC-CHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGC-FSSDILAAIEQAIDDNVNVLSMSLGGGTSDY- 288 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~- 288 (762)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...++++||+||++++++|||||||......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998632 159999999999999988764 8889999999999999999999999754211
Q ss_pred -------cccHHHHHHHHHHhcCCEEEEecCCCCCCCCC----------------------ccCCCCceEEecCCCCCCc
Q 004301 289 -------YKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS----------------------LSNVAPWITTVGAGTLDRD 339 (762)
Q Consensus 289 -------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVgA~~~~~~ 339 (762)
..+.+..++..+.++|++||+||||+|..... .+...+++|+|||+
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~----- 197 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT----- 197 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee-----
Confidence 12346667777889999999999999965421 12223344444432
Q ss_pred cceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHc
Q 004301 340 FPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAA 419 (762)
Q Consensus 340 ~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~ 419 (762)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCC
Q 004301 420 GGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499 (762)
Q Consensus 420 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 499 (762)
...+.++.||++|+...
T Consensus 198 ------------------------------------------------------------~~~~~~~~~S~~g~~~~--- 214 (294)
T cd07482 198 ------------------------------------------------------------DNNGNLSSFSNYGNSRI--- 214 (294)
T ss_pred ------------------------------------------------------------CCCCCcCccccCCCCcc---
Confidence 22236678999987654
Q ss_pred CCCCcEEecCCcEEecccCCCC---CCC------CCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCH-HHHHHH
Q 004301 500 LLKPDMIAPGVNILAGWSGAVG---PTG------LATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP-AAIRSA 569 (762)
Q Consensus 500 ~lKPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp-~~ik~~ 569 (762)
|++|||+++......... ... .........|..++|||||||+|||++|||+|++|.+++ .|||++
T Consensus 215 ----~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~ 290 (294)
T cd07482 215 ----DLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRI 290 (294)
T ss_pred ----eEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHH
Confidence 999999998532211100 000 001123357899999999999999999999999999999 999999
Q ss_pred HHhc
Q 004301 570 LMTT 573 (762)
Q Consensus 570 L~~T 573 (762)
|++|
T Consensus 291 L~~T 294 (294)
T cd07482 291 LYNT 294 (294)
T ss_pred HhhC
Confidence 9986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=337.65 Aligned_cols=226 Identities=36% Similarity=0.503 Sum_probs=185.7
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+|||||+||+++||+|.+. ++..++|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999753 11111121110 023567889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCc
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYY 289 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 289 (762)
|||||||+|++..... .+.|+||+|+|+.+|+++..+ +...+++++++++++.|++|||||||... .
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~ 109 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---D 109 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---C
Confidence 9999999999975332 248999999999999998776 67789999999999999999999999853 2
Q ss_pred ccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc--cCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCce
Q 004301 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL--SNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKL 367 (762)
Q Consensus 290 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~ 367 (762)
...+..++..+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------ 159 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------ 159 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------
Confidence 34556666788999999999999999876654 7888999999985321
Q ss_pred eeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEE
Q 004301 368 LPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATA 447 (762)
Q Consensus 368 ~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 447 (762)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCC
Q 004301 448 VGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLAT 527 (762)
Q Consensus 448 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 527 (762)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 -----------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------- 188 (229)
T cd07477 160 -----------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------- 188 (229)
T ss_pred -----------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC--------
Confidence 1456799999865 9999999999988764
Q ss_pred CCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 528 DSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 528 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.|..++|||||||+|||++|||+|++|+++|.+||++|++|
T Consensus 189 -----~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=341.89 Aligned_cols=156 Identities=23% Similarity=0.278 Sum_probs=118.4
Q ss_pred CCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCC
Q 004301 129 ASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDD 208 (762)
Q Consensus 129 G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 208 (762)
+++|+|||||||||++||+|.++ ++..++|...... .........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~------~~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD------GNKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC------cccCCCCCCCC
Confidence 78999999999999999999753 1111222211100 00011123578
Q ss_pred CCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-------CCHHHHHHHHHHHHhCCCcEEEEcc
Q 004301 209 DGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-------CFSSDILAAIEQAIDDNVNVLSMSL 281 (762)
Q Consensus 209 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~Sl 281 (762)
.||||||||||+ |+||+|+|+++|+++..+ ++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999994 789999999999998653 3567899999999999999999999
Q ss_pred CCCCCCC---cccHHHHHHHHHHhcCCEEEEecCCCCCCCC-C--ccCCCCceEEecCCC
Q 004301 282 GGGTSDY---YKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-S--LSNVAPWITTVGAGT 335 (762)
Q Consensus 282 G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVgA~~ 335 (762)
|...... ....+..++.+|.++|++||+||||+|.... . .+...|++|+|||.+
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9864321 2567788888999999999999999998764 3 345678999999854
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=355.85 Aligned_cols=274 Identities=35% Similarity=0.473 Sum_probs=207.4
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCC
Q 004301 133 IVGVLDTGVWPESKSFD-DTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGH 211 (762)
Q Consensus 133 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 211 (762)
+|||||||||++||+|. ++ + ...++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 011233344444332 112345678899
Q ss_pred hhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHH-hCCCcEEEEccCCC--CC-C
Q 004301 212 GTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAI-DDNVNVLSMSLGGG--TS-D 287 (762)
Q Consensus 212 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~--~~-~ 287 (762)
||||||+|+|.. . .+. ....|+||+|+|+.+|+++..+....+++++|++++ +++++|||||||.. .. .
T Consensus 49 GT~va~ii~~~~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~ 121 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNG-----PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP 121 (282)
T ss_dssp HHHHHHHHHHTT-S-SSS-----SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS
T ss_pred cchhhhhccccc-c-ccc-----cccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc
Confidence 999999999986 2 221 123899999999999998776677788999999999 89999999999872 21 2
Q ss_pred CcccHHHHHHHHHHhcCCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCC
Q 004301 288 YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLP 364 (762)
Q Consensus 288 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~ 364 (762)
...+.+..++..+.++|+++|+||||+|.... ..++..+++|+||+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~---------------------------- 173 (282)
T PF00082_consen 122 SYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN---------------------------- 173 (282)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET----------------------------
T ss_pred ccccccccccccccccCcceeecccccccccccccccccccccccccccccc----------------------------
Confidence 23344566666889999999999999987765 35566688888887321
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccc
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLP 444 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p 444 (762)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCC
Q 004301 445 ATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTG 524 (762)
Q Consensus 445 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 524 (762)
.+.++.||++|+... .+++||||+|||.+|+++++....
T Consensus 174 -------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~--- 212 (282)
T PF00082_consen 174 -------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR--- 212 (282)
T ss_dssp -------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES---
T ss_pred -------------------------------------ccccccccccccccc-cccccccccccccccccccccccc---
Confidence 114588999976542 389999999999999988876421
Q ss_pred CCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcC
Q 004301 525 LATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604 (762)
Q Consensus 525 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd 604 (762)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||+++.... .......||||++|
T Consensus 213 -------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in 276 (282)
T PF00082_consen 213 -------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLIN 276 (282)
T ss_dssp -------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-
T ss_pred -------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhC
Confidence 25889999999999999999999999999999999999999999986211 22344578999999
Q ss_pred ccccCC
Q 004301 605 PVSALN 610 (762)
Q Consensus 605 ~~~A~~ 610 (762)
+.+|++
T Consensus 277 ~~~a~~ 282 (282)
T PF00082_consen 277 AEKALN 282 (282)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=328.44 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=172.9
Q ss_pred CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCC
Q 004301 131 EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDG 210 (762)
Q Consensus 131 Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 210 (762)
||+|||||||||++||+|.++-.. .+.+..+. .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~~--------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDLE--------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------cccccccc--------cccCCCCCCCCCC
Confidence 799999999999999999864110 00010000 0011223567889
Q ss_pred ChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCc
Q 004301 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYY 289 (762)
Q Consensus 211 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 289 (762)
|||||||||++ .+|+++|+.+|+++..+ +...++++||+|++++|++|||||||..... .
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~ 106 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-D 106 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-c
Confidence 99999999975 36999999999998776 7888899999999999999999999986532 2
Q ss_pred ccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceee
Q 004301 290 KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLP 369 (762)
Q Consensus 290 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p 369 (762)
...+..++.++.++|+++|+||||++.... .++..+.+|+|++...++.
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~~------------------------------ 155 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADDP------------------------------ 155 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCCC------------------------------
Confidence 345666777888999999999999987543 3677788999987432110
Q ss_pred EEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEc
Q 004301 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVG 449 (762)
Q Consensus 370 ~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 449 (762)
T Consensus 156 -------------------------------------------------------------------------------- 155 (222)
T cd07492 156 -------------------------------------------------------------------------------- 155 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCC
Q 004301 450 QKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDS 529 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 529 (762)
. +.+++ ++|+.|||.+|+++.+.+
T Consensus 156 -----------------------------------~---~~~~~--------~~~~~apg~~i~~~~~~~---------- 179 (222)
T cd07492 156 -----------------------------------K---SFWYI--------YVEFSADGVDIIAPAPHG---------- 179 (222)
T ss_pred -----------------------------------c---ccccC--------CceEEeCCCCeEeecCCC----------
Confidence 0 11122 349999999999987764
Q ss_pred cccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 530 RRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 530 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 ---~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ---RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=347.51 Aligned_cols=248 Identities=21% Similarity=0.198 Sum_probs=180.0
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+++|+||+|+|||||||++||+|.++... ...++|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 356999999999999999999999999999764110 01111221110
Q ss_pred CCCCCCC--CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcE
Q 004301 199 SKESKSP--RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNV 276 (762)
Q Consensus 199 ~~~~~~~--~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 276 (762)
...+ .|..||||||||||+|+..+.. ...||||+|+|+.+|+++.. .....+..++.++.+ .++|
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceE
Confidence 0112 2788999999999999853321 13799999999999998764 334455566666554 4699
Q ss_pred EEEccCCCCCCC----cccHHHHHHHHHHh-----cCCEEEEecCCCCCCCCC----ccCCCCceEEecCCCCCCcccee
Q 004301 277 LSMSLGGGTSDY----YKDSVAIGAFAAME-----KGILVSCSAGNAGPSSYS----LSNVAPWITTVGAGTLDRDFPAF 343 (762)
Q Consensus 277 In~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~~~~~~~~~~ 343 (762)
||||||...... .......++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------ 215 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------ 215 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------
Confidence 999999764221 22233444444443 699999999999973221 22456788999884321
Q ss_pred EEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceE
Q 004301 344 VSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLG 423 (762)
Q Consensus 344 ~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g 423 (762)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCC
Q 004301 424 MVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKP 503 (762)
Q Consensus 424 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKP 503 (762)
+.++.||++|+..
T Consensus 216 -----------------------------------------------------------g~~~~~s~~g~~~-------- 228 (297)
T cd04059 216 -----------------------------------------------------------GVRASYSEVGSSV-------- 228 (297)
T ss_pred -----------------------------------------------------------CCCcCCCCCCCcE--------
Confidence 2567899999987
Q ss_pred cEEecCCc-------EEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 504 DMIAPGVN-------ILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 504 DI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
+++|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 229 ~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 89999987 666655420 126789999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=330.23 Aligned_cols=242 Identities=28% Similarity=0.334 Sum_probs=185.0
Q ss_pred CCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCC
Q 004301 128 SASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRD 207 (762)
Q Consensus 128 ~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 207 (762)
+|+||+|+|||+||+++||+|.+...... .+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc---------cccCCCCCC
Confidence 69999999999999999999986421100 000000 000123557
Q ss_pred CCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 004301 208 DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSMSLGGGT 285 (762)
Q Consensus 208 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 285 (762)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998543 2248999999999999998764 56677889999999999999999999865
Q ss_pred CC------------CcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCc---------cCCCCceEEecCCCCCCccceeE
Q 004301 286 SD------------YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL---------SNVAPWITTVGAGTLDRDFPAFV 344 (762)
Q Consensus 286 ~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~ 344 (762)
.. .....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------ 189 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------ 189 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC------
Confidence 22 1445666777788999999999999998654332 23456788888753322
Q ss_pred EcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEE
Q 004301 345 SLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGM 424 (762)
Q Consensus 345 ~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~ 424 (762)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeec--ccCCCCCCCCCCCCC
Q 004301 425 VLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAA--FSSRGPNSITPELLK 502 (762)
Q Consensus 425 i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~lK 502 (762)
.... ||++|+... .
T Consensus 190 -----------------------------------------------------------~~~~~~~s~~~~~~~-----~ 205 (267)
T cd04848 190 -----------------------------------------------------------TIASYSYSNRCGVAA-----N 205 (267)
T ss_pred -----------------------------------------------------------Ccccccccccchhhh-----h
Confidence 2223 488876542 3
Q ss_pred CcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 503 PDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 503 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
++++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 206 ~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 206 WCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred heeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 479999999999877311 27889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=319.45 Aligned_cols=353 Identities=23% Similarity=0.363 Sum_probs=259.7
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccC-C------CCcEEEEEcceeeEEEEEcC-----HHHHHHHhcCCCeE
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVS-D------SAEILYTYDNVIHGFSTQLT-----REEAESLEQRPGIL 95 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~-~------~~~v~~~y~~~~~g~s~~~~-----~~~~~~L~~~p~V~ 95 (762)
.+.+|||.|+.... ...++..+++.|+.-. . ....-..|...|.-+-++-. .-++++|..+|.|+
T Consensus 48 ve~EyIv~F~~y~~---Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKP---AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ecceeEEEeccccc---chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 36789999997653 2455666666666433 1 22233455555655555433 23588999999999
Q ss_pred EEEeCceeccCC------------CC------------------CCcccCCc------------CCCCCCcCCCCCCCcE
Q 004301 96 SVLPELKYELHT------------TR------------------SPEFLGLD------------KSANLFPTSGSASEVI 133 (762)
Q Consensus 96 ~v~~~~~~~~~~------------~~------------------s~~~~g~~------------~~~~~~~~~~~G~Gv~ 133 (762)
.|.|.+.+..-. +. .+..|+-. .++-+|.+|+||++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 999987654310 00 00001100 0234899999999999
Q ss_pred EEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChh
Q 004301 134 VGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGT 213 (762)
Q Consensus 134 VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 213 (762)
|||.|||+.-+||.|+.-- -...| .+. ..-.|.-||||
T Consensus 205 vAiFDTGl~~~HPHFrnvK---ERTNW-------------------------TNE--------------~tLdD~lgHGT 242 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNVK---ERTNW-------------------------TNE--------------DTLDDNLGHGT 242 (1033)
T ss_pred EEEeecccccCCccccchh---hhcCC-------------------------cCc--------------cccccCcccce
Confidence 9999999999999997410 00011 110 12456789999
Q ss_pred hHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCcccH
Q 004301 214 HTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDS 292 (762)
Q Consensus 214 hVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~ 292 (762)
.|||+|||... ..|.||+++|++.|||.+.- .+.+..++|++||+....||+|+|+|++ .+.+.+
T Consensus 243 FVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~P 308 (1033)
T KOG4266|consen 243 FVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLP 308 (1033)
T ss_pred eEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccch
Confidence 99999999741 37999999999999998766 7889999999999999999999999996 445556
Q ss_pred HHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCC--ceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeE
Q 004301 293 VAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAP--WITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPF 370 (762)
Q Consensus 293 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~ 370 (762)
+-..+......+|++|.|+||+|+-..+..+.+. .||.||.
T Consensus 309 FVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------------- 351 (1033)
T KOG4266|consen 309 FVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------------- 351 (1033)
T ss_pred HHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------------------
Confidence 6666668889999999999999998777665432 3444442
Q ss_pred EEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEch
Q 004301 371 VYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQ 450 (762)
Q Consensus 371 v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~ 450 (762)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCC----CCCCCCCcEEecCCcEEecccCCCCCCCCC
Q 004301 451 KFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSI----TPELLKPDMIAPGVNILAGWSGAVGPTGLA 526 (762)
Q Consensus 451 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 526 (762)
.+..+.+|.|||||-+.. ..|++||||++.|.+|..+....
T Consensus 352 ----------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~------- 396 (1033)
T KOG4266|consen 352 ----------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST------- 396 (1033)
T ss_pred ----------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc-------
Confidence 123348899999996542 24999999999999987764432
Q ss_pred CCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCC
Q 004301 527 TDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGH 602 (762)
Q Consensus 527 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 602 (762)
+-..+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++. ..-++||+|+
T Consensus 397 ------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQGaGk 457 (1033)
T KOG4266|consen 397 ------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQGAGK 457 (1033)
T ss_pred ------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------CchhhccCcc
Confidence 677899999999999999999966 34456899999999999999863 2346999999
Q ss_pred cCccccCC
Q 004301 603 VNPVSALN 610 (762)
Q Consensus 603 vd~~~A~~ 610 (762)
+|+.++.+
T Consensus 458 ldLL~syq 465 (1033)
T KOG4266|consen 458 LDLLESYQ 465 (1033)
T ss_pred hhHHHHHH
Confidence 99998876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=304.56 Aligned_cols=238 Identities=26% Similarity=0.307 Sum_probs=180.6
Q ss_pred CCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecC-C--CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 004301 208 DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG-G--CFSSDILAAIEQAIDDNVNVLSMSLGGG 284 (762)
Q Consensus 208 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 284 (762)
..-|||||||||+|+.....- ..||||+|+|+++++-+.. | .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 355999999999999755422 3799999999999996643 2 4556788999999999999999999986
Q ss_pred C-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccC---CCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecC
Q 004301 285 T-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSN---VAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKG 360 (762)
Q Consensus 285 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~ 360 (762)
. .+.....++..-..+.++|+++|+||||+||.-.++++ ....+|.|||--......+
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a------------------ 442 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA------------------ 442 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh------------------
Confidence 5 44455566655555568999999999999999877653 4457888887321111000
Q ss_pred CCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccC
Q 004301 361 DGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADA 440 (762)
Q Consensus 361 ~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 440 (762)
.|.
T Consensus 443 ------~y~----------------------------------------------------------------------- 445 (1304)
T KOG1114|consen 443 ------EYS----------------------------------------------------------------------- 445 (1304)
T ss_pred ------hhh-----------------------------------------------------------------------
Confidence 000
Q ss_pred cccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCC
Q 004301 441 HLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAV 520 (762)
Q Consensus 441 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 520 (762)
++ ..-......+|||||+.| |.+--.|+|||+.|-+ .|...
T Consensus 446 ---------------~~---------------------e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAs-VP~~t 486 (1304)
T KOG1114|consen 446 ---------------VR---------------------EPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIAS-VPQYT 486 (1304)
T ss_pred ---------------hh---------------------ccCCCCccccccCCCCcC--CCcceEEecCCccccC-Cchhh
Confidence 00 011225678999999998 8888899999999855 33221
Q ss_pred CCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCC
Q 004301 521 GPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPF 596 (762)
Q Consensus 521 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 596 (762)
...-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++ -.++
T Consensus 487 ----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~-------------id~f 543 (1304)
T KOG1114|consen 487 ----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD-------------IDSF 543 (1304)
T ss_pred ----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc-------------cchh
Confidence 12567899999999999999999855 57789999999999999999853 2457
Q ss_pred CCCCCCcCccccCC
Q 004301 597 DHGAGHVNPVSALN 610 (762)
Q Consensus 597 ~~G~G~vd~~~A~~ 610 (762)
.||.|++++.+|.+
T Consensus 544 aqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 544 AQGQGMLQVDKAYE 557 (1304)
T ss_pred ccCcceeehhHHHH
Confidence 99999999999987
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=283.82 Aligned_cols=194 Identities=22% Similarity=0.196 Sum_probs=141.7
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHH--HhCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQA--IDDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 282 (762)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 557899999999999997 4677999998765521 2334466778888 5679999999999
Q ss_pred CCCCCC------cccHHHHHHHHHHhc-CCEEEEecCCCCCCC-----CCccCCCCceEEecCCCCCCccceeEEcCCCc
Q 004301 283 GGTSDY------YKDSVAIGAFAAMEK-GILVSCSAGNAGPSS-----YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQ 350 (762)
Q Consensus 283 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 350 (762)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 865321 223456666666666 999999999999853 234556788999998543221
Q ss_pred EEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecC
Q 004301 351 NYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTE 430 (762)
Q Consensus 351 ~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 430 (762)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC
Q 004301 431 SNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 510 (762)
....+.||++|-.....+..||||+|||+
T Consensus 164 ---------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~ 192 (247)
T cd07488 164 ---------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGS 192 (247)
T ss_pred ---------------------------------------------------cceecccccccCCCCCCCCceeEEEEeee
Confidence 00234566654222223788999999999
Q ss_pred cEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 004301 511 NILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP------AAIRSALMTT 573 (762)
Q Consensus 511 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp------~~ik~~L~~T 573 (762)
+|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+.|
T Consensus 193 ~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 193 NYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9998 322 6889999999999999999999999887764 4566666655
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-31 Score=270.41 Aligned_cols=195 Identities=38% Similarity=0.538 Sum_probs=157.1
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHH-hCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAI-DDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~SlG 282 (762)
..+..+||||||++|++...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g 110 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG 110 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCC
Confidence 56788999999999999854322 16999999999999987765 67788999999999 899999999999
Q ss_pred CCCCCCcccHHHHHHHHHHhc-CCEEEEecCCCCCCCC---CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeee
Q 004301 283 GGTSDYYKDSVAIGAFAAMEK-GILVSCSAGNAGPSSY---SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLY 358 (762)
Q Consensus 283 ~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~ 358 (762)
..... ....+...+.++.++ |+++|+||||++.... ..++..+++|+||+.+.+..
T Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 170 (241)
T cd00306 111 GPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT------------------- 170 (241)
T ss_pred CCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC-------------------
Confidence 86533 344566666677777 9999999999998876 47788999999998643221
Q ss_pred cCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccc
Q 004301 359 KGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVA 438 (762)
Q Consensus 359 ~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 438 (762)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeee-cccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVA-AFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.. .++++| .|||+.|||..+.....
T Consensus 171 ----------------------------------------------~~~~~~~~~--------~~~~~~apg~~~~~~~~ 196 (241)
T cd00306 171 ----------------------------------------------PASPSSNGG--------AGVDIAAPGGDILSSPT 196 (241)
T ss_pred ----------------------------------------------ccCCcCCCC--------CCceEEeCcCCccCccc
Confidence 11 334444 36699999999987511
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTT 573 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~T 573 (762)
.. ...+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 197 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 197 TG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11 1378999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=239.50 Aligned_cols=272 Identities=34% Similarity=0.464 Sum_probs=195.7
Q ss_pred CCCCcC--CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCC
Q 004301 120 ANLFPT--SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPID 197 (762)
Q Consensus 120 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 197 (762)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|....
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457777 99999999999999999999999864110 01122111
Q ss_pred CCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecC-C-CCHHHHHHHHHHHHhCC--
Q 004301 198 ESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVG-G-CFSSDILAAIEQAIDDN-- 273 (762)
Q Consensus 198 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g-- 273 (762)
......|.++|||||+|++++....+ .....|+||+++++.+|++... | ....+++.+|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 244 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGP 244 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCC
Confidence 00024688999999999999842111 1124799999999999999866 5 67778899999999999
Q ss_pred CcEEEEccCCCCCCCcccHHHHHHHHHHhcC-CEEEEecCCCCCCCC----CccCCC--CceEEecCCCCCCccceeEEc
Q 004301 274 VNVLSMSLGGGTSDYYKDSVAIGAFAAMEKG-ILVSCSAGNAGPSSY----SLSNVA--PWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 274 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVgA~~~~~~~~~~~~~ 346 (762)
+++||||+|..........+..++..++..| +++|+|+||.+.... .++... +.+++|+|.+.
T Consensus 245 ~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------- 314 (508)
T COG1404 245 ADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------- 314 (508)
T ss_pred CcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------
Confidence 9999999998522233345556666777777 999999999987752 122222 25555555311
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
.+.++.||++|+.. +.+++
T Consensus 315 -------------------------------------------------------~~~~~~~s~~g~~~------~~~~~ 333 (508)
T COG1404 315 -------------------------------------------------------SDTVASFSNDGSPT------GVDIA 333 (508)
T ss_pred -------------------------------------------------------CCccccccccCCCC------Cccee
Confidence 12678899999752 12999
Q ss_pred ecCCcEEe-----cccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccccC
Q 004301 507 APGVNILA-----GWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP-EWSPAAIRSALMTTAYVSYKN 580 (762)
Q Consensus 507 APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~~sp~~ik~~L~~TA~~~~~~ 580 (762)
|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++...
T Consensus 334 apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (508)
T COG1404 334 APGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT--- 399 (508)
T ss_pred CCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc---
Confidence 99999988 444431 1499999999999999999999999999 899999999988888730
Q ss_pred CcccccccCCCCCCCCCCCCCCcCccccCC
Q 004301 581 GQKLQDIATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 581 g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
........++.|..+...+..
T Consensus 400 ---------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 ---------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ---------cCCccccccccCccccccccc
Confidence 111223366666666555443
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=202.70 Aligned_cols=170 Identities=16% Similarity=0.253 Sum_probs=107.4
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..|++||+|+++|+|.||||-|||+..+ |+ --.+++|..+. +
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssnd---------p 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSND---------P 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccCC---------C
Confidence 45899999999999999999999999999742 11 11223343321 1
Q ss_pred CCCCCCCC--CCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcE
Q 004301 200 KESKSPRD--DDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNV 276 (762)
Q Consensus 200 ~~~~~~~D--~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dV 276 (762)
.+++--.| .+.|||.|||-+++...++. .| .|||.+.++..+|+++. -+..|+++|-..-.+ ...+|
T Consensus 197 fpyprytddwfnshgtrcagev~aardngi--cg------vgvaydskvagirmldq--pymtdlieansmghep~kihi 266 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHI 266 (629)
T ss_pred CCCCcccchhhhccCccccceeeeeccCCc--ee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEE
Confidence 11111122 58999999999888765543 33 69999999999999864 456666665332222 24789
Q ss_pred EEEccCCCCCC-Ccc---cHHHHHHHHHHh-----cCCEEEEecCCCCCCC-CCccC--CCCceEEecC
Q 004301 277 LSMSLGGGTSD-YYK---DSVAIGAFAAME-----KGILVSCSAGNAGPSS-YSLSN--VAPWITTVGA 333 (762)
Q Consensus 277 In~SlG~~~~~-~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~-~~~~~--~~p~vitVgA 333 (762)
.+-|||..... ..+ ++..+|+-+-+. .|-+.|.|+|..|... +...+ .+-|.|++-+
T Consensus 267 ysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 267 YSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred EecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 99999975421 111 222222223332 4679999999887542 22222 3345555543
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=182.29 Aligned_cols=101 Identities=27% Similarity=0.310 Sum_probs=81.8
Q ss_pred ceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCC---CcccHHHHHHHHHHhcCCEEEE
Q 004301 236 TARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDD---NVNVLSMSLGGGTSD---YYKDSVAIGAFAAMEKGILVSC 309 (762)
Q Consensus 236 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 309 (762)
.+.||||+|+|+.|+++++. ..+++.++.+++++ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997542 45678888888887 999999999986532 2335677777889999999999
Q ss_pred ecCCCCCCCC-----------CccCCCCceEEecCCCCCCc
Q 004301 310 SAGNAGPSSY-----------SLSNVAPWITTVGAGTLDRD 339 (762)
Q Consensus 310 AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~~ 339 (762)
||||+|.... .+++..|||++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35688999999999876554
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=114.66 Aligned_cols=123 Identities=52% Similarity=0.825 Sum_probs=99.8
Q ss_pred EEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc-hhhhHHHHHHHcCce
Q 004301 344 VSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN-ARVQKGAVVKAAGGL 422 (762)
Q Consensus 344 ~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~-~~~~~~~~~~~~Ga~ 422 (762)
+.++||+++.|++++++.. ..+++++............|.+..+...+++||||+|+++.+ .+.++..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6789999999999997553 456777644433344557899888888999999999999999 899999999999999
Q ss_pred EEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEE
Q 004301 423 GMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVT 469 (762)
Q Consensus 423 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 469 (762)
|+|++++.............+|.+.|+.++|+.|++|++++..++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999886543333333467999999999999999999988776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=115.04 Aligned_cols=117 Identities=32% Similarity=0.395 Sum_probs=92.8
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccccc-Cccc
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVAD-AHLL 443 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~ 443 (762)
....++++.+. |....+...+++|||+||+|+.|.+.+|..+++++||.|+|++|+.......... ...+
T Consensus 25 ~~~~~lv~~g~---------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 25 GKTYELVDAGL---------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CcEEEEEEccC---------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 45788888643 3344455678999999999999999999999999999999999986543222222 3578
Q ss_pred ceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 444 PATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 444 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
|++.|+..+|+.|++++++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999988 66677776655 45778899999999973
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=89.57 Aligned_cols=76 Identities=43% Similarity=0.720 Sum_probs=58.1
Q ss_pred eEEEEeCCCCCCcc-hhhhHHHHHHhhcc-----cCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceec
Q 004301 31 TYIIHMAKSEMPAS-FEHHTHWYESSLKS-----VSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYE 104 (762)
Q Consensus 31 ~yIV~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~ 104 (762)
+|||.|++...... ...+.+++.+++.+ .....++.+.|...|+||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999876554 66677777755443 2247899999999999999999999999999999999999999987
Q ss_pred cC
Q 004301 105 LH 106 (762)
Q Consensus 105 ~~ 106 (762)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=86.45 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=76.3
Q ss_pred eeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc--c-c-c-cCc
Q 004301 367 LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE--L-V-A-DAH 441 (762)
Q Consensus 367 ~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~-~-~-~~~ 441 (762)
+-++++... ...+.|.+..+...+++|||+||.|+.|.+.+|..+++++||.++|++|+...... . . . ...
T Consensus 18 ~~~lv~~~~----~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP----ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC----CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 456666432 23478988877777899999999999999999999999999999999998653211 1 1 1 345
Q ss_pred ccceEEEchhhHHHHHHHHhcCCCcE
Q 004301 442 LLPATAVGQKFGDAIKSYLVSDPKPT 467 (762)
Q Consensus 442 ~~p~~~i~~~~~~~l~~~~~~~~~~~ 467 (762)
.+|+++|+..+|+.|+.++..+.+.+
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999998776543
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.6e-08 Score=87.33 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-cc---ccc----cCcccceEEEchhhH
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EE---LVA----DAHLLPATAVGQKFG 453 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~---~~~----~~~~~p~~~i~~~~~ 453 (762)
.+.|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .. ... ....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467986443 567999999999999999999999999999999999976431 11 111 235799999999999
Q ss_pred HHHHHHHhcCCCcEEEEE
Q 004301 454 DAIKSYLVSDPKPTVTIL 471 (762)
Q Consensus 454 ~~l~~~~~~~~~~~~~i~ 471 (762)
+.|++.+..+..+++.+.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999998887766553
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.5e-08 Score=89.48 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=72.6
Q ss_pred CCCcccCCCC--CccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCc-cc---cccCcccceEEEchhhHH
Q 004301 381 NGNLCMMDTL--IPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGE-EL---VADAHLLPATAVGQKFGD 454 (762)
Q Consensus 381 ~~~~c~~~~~--~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~---~~~~~~~p~~~i~~~~~~ 454 (762)
..+.|.+... ++.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+. .. ..+...+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4567988776 56789999999999999999999999999999999999876221 11 122347899999999999
Q ss_pred HHHHHHhcCCCcEEE
Q 004301 455 AIKSYLVSDPKPTVT 469 (762)
Q Consensus 455 ~l~~~~~~~~~~~~~ 469 (762)
.|+.++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887765544
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.3e-08 Score=86.90 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=73.1
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc--cc--ccCc
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE--LV--ADAH 441 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~ 441 (762)
..+|++... ....|....+.+.+++|+|+|++||.|+|.+|..+++++||.++|++|+...... .. ....
T Consensus 20 ~~~~~~~~~------~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLT------SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCC------CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 346666643 3467999888888999999999999999999999999999999999998653111 11 1345
Q ss_pred ccceEEEchhhHHHHHHHHhc
Q 004301 442 LLPATAVGQKFGDAIKSYLVS 462 (762)
Q Consensus 442 ~~p~~~i~~~~~~~l~~~~~~ 462 (762)
.||+++|+.++|+.|.+.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999888763
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-08 Score=86.24 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCC----CCccccccCcccceEEEchhhHHHHH
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTES----NGEELVADAHLLPATAVGQKFGDAIK 457 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~~~~l~ 457 (762)
...|.+..+...+++||||||.||.|.+.+|..+++++||.|+|++|... ...........+|+++|+..+|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 35577778888999999999999999999999999999999999999211 12223344688999999999999999
Q ss_pred HHH
Q 004301 458 SYL 460 (762)
Q Consensus 458 ~~~ 460 (762)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 885
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=85.49 Aligned_cols=87 Identities=30% Similarity=0.372 Sum_probs=70.1
Q ss_pred CCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-cc---ccCcccceEEEchhhHHHH
Q 004301 381 NGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-LV---ADAHLLPATAVGQKFGDAI 456 (762)
Q Consensus 381 ~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~---~~~~~~p~~~i~~~~~~~l 456 (762)
..+.|.+..+. .+++|||+||.|+.|.+.+|..+++++||.|+|++|+...... .. .....+|+++|+.++|+.|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679887774 4599999999999999999999999999999999988654211 11 1235799999999999999
Q ss_pred HHHHhcCCCcEE
Q 004301 457 KSYLVSDPKPTV 468 (762)
Q Consensus 457 ~~~~~~~~~~~~ 468 (762)
+.|++.+.+.++
T Consensus 105 ~~~l~~g~~v~v 116 (118)
T cd04818 105 KAALAAGGTVTV 116 (118)
T ss_pred HHHHhcCCcEEE
Confidence 999987765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=104.03 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=99.8
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+...|..+++|+++.|+|.|+|+...||+.... .-..+..++.... +.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------ND 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CC
Confidence 466999999999999999999999999999742 1112222222221 12
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVI 277 (762)
+.+..+......|||-||+-.+...++..- ..|+++++++..+|++.. ..++...+...... .-+++-
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~ 138 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIY 138 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee---ecccceecccccCCCCCceee
Confidence 222223344689999999999988633222 269999999999999853 12233333322222 347899
Q ss_pred EEccCCCCCC-Cc---ccHHHHHHHH-----HHhcCCEEEEecCCCCCCCC
Q 004301 278 SMSLGGGTSD-YY---KDSVAIGAFA-----AMEKGILVSCSAGNAGPSSY 319 (762)
Q Consensus 278 n~SlG~~~~~-~~---~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 319 (762)
+.|||..... .. ......+... ...+|-+.|+|.||.|....
T Consensus 139 scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 139 SCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9999975421 11 1112222222 23578899999999886554
|
|
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=85.96 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=68.4
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC------cc-cc-----ccCcccceEEEc
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG------EE-LV-----ADAHLLPATAVG 449 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~------~~-~~-----~~~~~~p~~~i~ 449 (762)
.+.|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+.... .. .. .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 567899999999999999999999999999999999875431 11 11 124578999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 004301 450 QKFGDAIKSYLVSDPKPTV 468 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~ 468 (762)
..+|+.|+..+..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987665443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-07 Score=81.93 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=72.5
Q ss_pred eeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-ccccCcccceE
Q 004301 368 LPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-LVADAHLLPAT 446 (762)
Q Consensus 368 ~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~ 446 (762)
+|++.... ......+.|.+...+..+++|+|+|++||+|.|.+|..+++++||.++|++|+...... ...+...+|.+
T Consensus 28 ~p~~~~~~-~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSL-DTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeec-ccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 66555432 23345678987655556899999999999999999999999999999999988654222 12223345666
Q ss_pred EEchhhHHHHHHHHhcCCCcE
Q 004301 447 AVGQKFGDAIKSYLVSDPKPT 467 (762)
Q Consensus 447 ~i~~~~~~~l~~~~~~~~~~~ 467 (762)
.+ ..+|+.|++.+..+...+
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEE
Confidence 66 999999999998765443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=83.94 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=68.8
Q ss_pred CcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc----ccccCcccceEEEchhhHHHHHH
Q 004301 383 NLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE----LVADAHLLPATAVGQKFGDAIKS 458 (762)
Q Consensus 383 ~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~~~p~~~i~~~~~~~l~~ 458 (762)
..|.+..+ +.+++|||+|++|+.|.|.+|..+++++||.|+|++|+...+.. ...+...+|++.|+.++|+.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46876555 35799999999999999999999999999999999998632211 11234679999999999999999
Q ss_pred HHhcCCCcEE
Q 004301 459 YLVSDPKPTV 468 (762)
Q Consensus 459 ~~~~~~~~~~ 468 (762)
.+.++.+.++
T Consensus 111 ~l~~g~~v~~ 120 (122)
T cd02130 111 ALANGGEVSA 120 (122)
T ss_pred HHhcCCcEEE
Confidence 9988876554
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.9e-07 Score=81.47 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=67.4
Q ss_pred CCcccCCCCC--cc----ccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccc-----------cccCcccc
Q 004301 382 GNLCMMDTLI--PE----KVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEEL-----------VADAHLLP 444 (762)
Q Consensus 382 ~~~c~~~~~~--~~----~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----------~~~~~~~p 444 (762)
.+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+....... ..+...||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578765442 22 3788999999999999999999999999999999986532111 11234699
Q ss_pred eEEEchhhHHHHHHHHhcCCCcEE
Q 004301 445 ATAVGQKFGDAIKSYLVSDPKPTV 468 (762)
Q Consensus 445 ~~~i~~~~~~~l~~~~~~~~~~~~ 468 (762)
+++|+..+|+.|+..+..+...++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999988765544
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.5e-07 Score=83.70 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCcccCCC--CCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-ccc-c----ccCcccceEEEchhhH
Q 004301 382 GNLCMMDT--LIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EEL-V----ADAHLLPATAVGQKFG 453 (762)
Q Consensus 382 ~~~c~~~~--~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~-~----~~~~~~p~~~i~~~~~ 453 (762)
...|.+.. +...+++||||||.|+.|.+.+|..+++++||.|+|++++.... ... . .....+|++.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 67788999999999999999999999999999999999986532 111 1 1345799999999999
Q ss_pred HHHHHHHhcCCCcE
Q 004301 454 DAIKSYLVSDPKPT 467 (762)
Q Consensus 454 ~~l~~~~~~~~~~~ 467 (762)
+.|+.++.++.+.+
T Consensus 110 ~~l~~~~~~~~~v~ 123 (126)
T cd00538 110 EALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHhcCCceE
Confidence 99999998765433
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-07 Score=84.35 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc-----c-cCcccceEEEchhhHHH
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV-----A-DAHLLPATAVGQKFGDA 455 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-----~-~~~~~p~~~i~~~~~~~ 455 (762)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+........ . ....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798754 479999999999999999999999999999999998764321111 1 13579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 004301 456 IKSYLVSDPKPTV 468 (762)
Q Consensus 456 l~~~~~~~~~~~~ 468 (762)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-07 Score=83.40 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=61.2
Q ss_pred CCCccccCCcEEEEeCCCch-----hhhHHHHHHHcCceEEEEeecCC-CC-c-ccccc---CcccceEEEchhhHHHHH
Q 004301 389 TLIPEKVAGKIVMCDRGVNA-----RVQKGAVVKAAGGLGMVLANTES-NG-E-ELVAD---AHLLPATAVGQKFGDAIK 457 (762)
Q Consensus 389 ~~~~~~~~g~iv~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~-~~-~-~~~~~---~~~~p~~~i~~~~~~~l~ 457 (762)
.+.+.+++|||+|++||.|. |.+|.++++++||.|+|+||+.. .+ . ..+.+ ...+|++.|++.+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 34456899999999999999 99999999999999999999972 22 1 12222 458999999999999999
Q ss_pred HHHhcC
Q 004301 458 SYLVSD 463 (762)
Q Consensus 458 ~~~~~~ 463 (762)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=77.82 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=57.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEe-ecC-----CCCe-----------EEEEEcCeEEEeecCeeeEEEEEEEEecC---
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFIT-SST-----GPGV-----------KISVEPATLSFTQANEKKSYTVTFTVSSM--- 734 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~-~~~-----~~~~-----------~v~v~p~~~~~~~~~~~~~~~vt~~~~~~--- 734 (762)
...++++||+|.|+ ..+|+++.. ..+ ..|. .++..|.++++ ++|++++|+|+|+.+..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 46999999999999 999999877 210 1121 56677888999 89999999999999642
Q ss_pred CCCCeEEEEEEEEc-Cc-eEEEeEEE
Q 004301 735 PSNTNSFAHLEWSD-GK-YIVGSPIA 758 (762)
Q Consensus 735 ~~~~~~~G~i~~~~-~~-~~v~~P~~ 758 (762)
+.+.+++|+|.+++ .. ..+++||.
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 45789999999995 34 49999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.1e-07 Score=80.12 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=64.9
Q ss_pred CCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-cc-cc----ccCcccceEEEchhhHH
Q 004301 381 NGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EE-LV----ADAHLLPATAVGQKFGD 454 (762)
Q Consensus 381 ~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-~~----~~~~~~p~~~i~~~~~~ 454 (762)
..+.|.+. +..+++|||+|+.||+|.|.+|..+++++||.++|++|+.... .. .. .....+|+++++..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 45679765 5578999999999999999999999999999999999876532 11 11 22357999999999999
Q ss_pred HHHHHHhc
Q 004301 455 AIKSYLVS 462 (762)
Q Consensus 455 ~l~~~~~~ 462 (762)
+|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988653
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=103.41 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=59.8
Q ss_pred ceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC-----CCCcccHHHHHHHHHHhcCCEEEE
Q 004301 236 TARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNV-NVLSMSLGGGT-----SDYYKDSVAIGAFAAMEKGILVSC 309 (762)
Q Consensus 236 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~ 309 (762)
..+-+||.|+|..|-. .. ........|+......=+ -+|-.||+... .+.+-+.+......|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3468999999998866 22 222223333333222211 33445666532 122334556666688899999999
Q ss_pred ecCCCCCCCC--------CccCCCCceEEecC
Q 004301 310 SAGNAGPSSY--------SLSNVAPWITTVGA 333 (762)
Q Consensus 310 AAGN~g~~~~--------~~~~~~p~vitVgA 333 (762)
|+|.+|.... ..++.+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999986654 34568999999997
|
|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=83.16 Aligned_cols=84 Identities=24% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCcccCCCCCc---cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-ccc-----cCcccceEEEchhh
Q 004301 382 GNLCMMDTLIP---EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-LVA-----DAHLLPATAVGQKF 452 (762)
Q Consensus 382 ~~~c~~~~~~~---~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~-----~~~~~p~~~i~~~~ 452 (762)
.+.|.+....+ ....|+|+|++||.|.|.+|..+++++||.++|++|+...... ... ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798776644 7899999999999999999999999999999999998654222 111 13589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004301 453 GDAIKSYLVSDPK 465 (762)
Q Consensus 453 ~~~l~~~~~~~~~ 465 (762)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999887654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.5e-05 Score=68.67 Aligned_cols=91 Identities=22% Similarity=0.137 Sum_probs=69.8
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc--hhhhHHHHHHHcCceEEEEeecCCCCccc-----c
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN--ARVQKGAVVKAAGGLGMVLANTESNGEEL-----V 437 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~ 437 (762)
..+.++|+.+... +..+...+++||||++.++.+ .+.+|..+++++||.|+|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~---------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYGL---------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCCC---------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 4567888876431 223335679999999999999 88999999999999999999875442211 1
Q ss_pred --ccCcccceEEEchhhHHHHHHHHhcCC
Q 004301 438 --ADAHLLPATAVGQKFGDAIKSYLVSDP 464 (762)
Q Consensus 438 --~~~~~~p~~~i~~~~~~~l~~~~~~~~ 464 (762)
.....+|++.|+.++++.|...++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999987643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00052 Score=63.99 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=61.4
Q ss_pred CccccCCcEEEEeCCCc------hhhhH-------HHHHHHcCceEEEEeecCC-------CCcccc-ccCcccceEEEc
Q 004301 391 IPEKVAGKIVMCDRGVN------ARVQK-------GAVVKAAGGLGMVLANTES-------NGEELV-ADAHLLPATAVG 449 (762)
Q Consensus 391 ~~~~~~g~iv~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~i~ 449 (762)
...+++||||++.++.| .+..+ ...++++||.|+|++|... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45789999999999999 88888 6899999999999998532 222211 223569999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 004301 450 QKFGDAIKSYLVSDPKPTV 468 (762)
Q Consensus 450 ~~~~~~l~~~~~~~~~~~~ 468 (762)
.+++..|...++.+...++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999887755443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0038 Score=60.74 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=56.1
Q ss_pred ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC-cc-----------------------------c-cc--
Q 004301 392 PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG-EE-----------------------------L-VA-- 438 (762)
Q Consensus 392 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-----------------------------~-~~-- 438 (762)
..+++|||+|+++|.|.+.+|..+|+++||+|+|+|++.... .. . ..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457999999999999999999999999999999999874110 00 0 00
Q ss_pred -cCcccceEEEchhhHHHHHHHHhc
Q 004301 439 -DAHLLPATAVGQKFGDAIKSYLVS 462 (762)
Q Consensus 439 -~~~~~p~~~i~~~~~~~l~~~~~~ 462 (762)
.-..||+.-|+..+++.|+..+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 124588999999999999998753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0061 Score=56.95 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=51.2
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc------------------hhhhHHHHHHHcCceEEEEe
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN------------------ARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 427 (762)
...|+|+.+..- ....|....+...+++||||++.++.| .+..|..+++++||.|+|++
T Consensus 20 ~~aelVfvGyGi---~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 20 KDAPLVFVGYGI---KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred cceeeEEecCCc---CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 457888877542 224587778888899999999999877 46789999999999999999
Q ss_pred ecCC
Q 004301 428 NTES 431 (762)
Q Consensus 428 n~~~ 431 (762)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9854
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0077 Score=55.91 Aligned_cols=63 Identities=27% Similarity=0.285 Sum_probs=50.7
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCch------------hhhHHHHHHHcCceEEEEeecCC
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNA------------RVQKGAVVKAAGGLGMVLANTES 431 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 431 (762)
..-++|+.+... ....|....+...+++|||||+.++.+. +..|.+++.++||.|+|++++..
T Consensus 22 v~gelVfvGyG~---~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGL---VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCc---CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 456788876553 2356877777788999999999998863 66899999999999999999854
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=64.02 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=63.3
Q ss_pred ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc------ccccCcccceEEEchhhHHHHHHHHhcCCC
Q 004301 392 PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE------LVADAHLLPATAVGQKFGDAIKSYLVSDPK 465 (762)
Q Consensus 392 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 465 (762)
...+++|++++.||.|.|.+|++.++++||.++++.|+..+-.. .....-.||++++++++++.+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 46789999999999999999999999999999999998543222 223357899999999999999886666655
Q ss_pred cEEEE
Q 004301 466 PTVTI 470 (762)
Q Consensus 466 ~~~~i 470 (762)
.++.+
T Consensus 171 V~~~l 175 (541)
T KOG2442|consen 171 VELAL 175 (541)
T ss_pred EEEEE
Confidence 54433
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.011 Score=55.91 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=50.0
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCC------------------chhhhHHHHHHHcCceEEEEe
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGV------------------NARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~ 427 (762)
.+-|+|+.+... ....|....+...+++|||||+.++. |.+..|..++++.||.|+|++
T Consensus 20 vtg~lVfvGyGi---~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~ 96 (151)
T cd04822 20 VTAPVVFAGYGI---TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVV 96 (151)
T ss_pred ceEeEEEecCCc---CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEE
Confidence 356788876542 23557777777789999999998774 466789999999999999999
Q ss_pred ecCCC
Q 004301 428 NTESN 432 (762)
Q Consensus 428 n~~~~ 432 (762)
++...
T Consensus 97 ~d~~~ 101 (151)
T cd04822 97 NGPNS 101 (151)
T ss_pred eCCcc
Confidence 98543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.085 Score=46.46 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=62.1
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEEcCceEEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVG 754 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~ 754 (762)
...+.+++|+|.+. +..|++.... .....++++|..-.+ ++|++.++.|+|.+.. + .+.+.+.|...-.+..+.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-~g~~~~~l~i~~e~~~~~ 94 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPE--SLSSFFSVEPPSGFL-APGESVELEVTFSPTK-P-LGDYEGSLVITTEGGSFE 94 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCC--cCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-CceEEEEEEEEECCeEEE
Confidence 47888999999999 9999987644 234556777776566 7999999999999652 2 346789999987677888
Q ss_pred eEEEEEe
Q 004301 755 SPIAISW 761 (762)
Q Consensus 755 ~P~~v~~ 761 (762)
+|+-++.
T Consensus 95 i~v~a~~ 101 (102)
T PF14874_consen 95 IPVKAEV 101 (102)
T ss_pred EEEEEEE
Confidence 8887653
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.019 Score=52.92 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=74.8
Q ss_pred eeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccc----------
Q 004301 367 LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEEL---------- 436 (762)
Q Consensus 367 ~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~---------- 436 (762)
.+++|.+. ....|.... +.-...+.+++++||+|+|..|..+++++||..+|+.++.......
T Consensus 65 ~~~lV~ad------Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLAD------PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred CcceeecC------ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 35666643 446676543 2356788999999999999999999999999999998775433221
Q ss_pred cccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecc
Q 004301 437 VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEG 474 (762)
Q Consensus 437 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~ 474 (762)
..+...+|++++-..+|..++..++.....-+.|...-
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 12357899999999999988888877666666665443
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.085 Score=44.06 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=38.2
Q ss_pred ceEEEEEEEEecCC-C-ceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCC
Q 004301 676 SVLKYTRSLTNVGP-P-GTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPS 736 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~-~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~ 736 (762)
...+++.+|+|.+. . ...++++.. |+|-++...|..+...++|++++++++|+++.+..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE----TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeC--CCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 58999999999997 4 567788888 99999888888776558999999999999986544
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.03 Score=52.36 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=36.0
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecC
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTE 430 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 430 (762)
-+++|||+|++.|...+..|.++|++.||+|+|+|.+.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecCh
Confidence 57999999999999999999999999999999999874
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.083 Score=53.29 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=45.1
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCC-----CccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCC
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTL-----IPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTES 431 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~-----~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 431 (762)
.+-++||++. |....+ ...+++|||||++++.+.+.+|..+|+++||+|+|++++..
T Consensus 45 v~g~lVyvny---------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY---------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC---------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4567888653 333222 24589999999999999889999999999999999999853
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.23 Score=53.06 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=62.3
Q ss_pred CcccCCCCC---ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc----ccCcccceEEEchhhHHH
Q 004301 383 NLCMMDTLI---PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV----ADAHLLPATAVGQKFGDA 455 (762)
Q Consensus 383 ~~c~~~~~~---~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~~~~ 455 (762)
++|.+...- .......++++.||+|+|.+|..+|+.+|..++|+||+........ .....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 456654331 3456677999999999999999999999999999999866543322 234678899999999999
Q ss_pred HHHHHhcC
Q 004301 456 IKSYLVSD 463 (762)
Q Consensus 456 l~~~~~~~ 463 (762)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98875433
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.7 Score=39.31 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=40.6
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCC
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMP 735 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 735 (762)
-.-.++++|+|.+. +.+|++++.. ++|+++......+++ ++|++.++.|.|..+...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g--~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEG--LPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES---SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEec--CCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 35677889999999 9999999998 889999655578888 899999999999998654
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.8 Score=39.45 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=52.9
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeec-C-CCC--------------eEEEE-----EcCeEEEeecCeeeEEEEEEEEec
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSS-T-GPG--------------VKISV-----EPATLSFTQANEKKSYTVTFTVSS 733 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~-~-~~~--------------~~v~v-----~p~~~~~~~~~~~~~~~vt~~~~~ 733 (762)
++.+++++|+|.++ ..+|.+.+... + ..| +.+.+ .|..+++ +++++++++++|+.+.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEEcCC
Confidence 68999999999999 99999887541 1 111 11111 1445777 8999999999999987
Q ss_pred CCCCCeEEEEEEEEc
Q 004301 734 MPSNTNSFAHLEWSD 748 (762)
Q Consensus 734 ~~~~~~~~G~i~~~~ 748 (762)
..-.+.+-|-|.++.
T Consensus 106 ~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 106 KAFDGIILGGIYFSE 120 (121)
T ss_pred CCcCCEEEeeEEEEe
Confidence 766778888888763
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.7 Score=41.56 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=42.7
Q ss_pred ceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchh-------------------hhHHHHHHHcCceEEEE
Q 004301 366 KLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNAR-------------------VQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 366 ~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~ 426 (762)
..-|+|+.+..-...+ -....+..-|++||||++..++..+ ..|...+.+.||.|+|+
T Consensus 22 ~~~elVFvGyGi~ape---~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 22 KDSPLVFVGYGIVAPE---YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred ccCCEEEeccCccCcc---cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 4567788765532110 1122455678999999999765422 24899999999999999
Q ss_pred eecC
Q 004301 427 ANTE 430 (762)
Q Consensus 427 ~n~~ 430 (762)
+...
T Consensus 99 v~~~ 102 (157)
T cd04821 99 VHET 102 (157)
T ss_pred EeCC
Confidence 9764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=80.92 E-value=15 Score=33.30 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=47.9
Q ss_pred eEEEEEEEEecCC-CceEEEEEeec--C---CCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 677 VLKYTRSLTNVGP-PGTYKVFITSS--T---GPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 677 ~~~~~rtv~n~~~-~~~y~~~~~~~--~---~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
..+.+++|+|.++ +..+.+.+... . .+.-.+-|.|..+.+ ++|++|+++| +.....+.+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 4566899999998 77777777651 1 112257789999999 8999999999 7754445555555566666
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 762 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-117 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-112 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-12 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 3e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 7e-07 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 9e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-06 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 2e-06 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 2e-06 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 2e-06 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 2e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 2e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 3e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 3e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 3e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 3e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 3e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 4e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 4e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 4e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 5e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 5e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 5e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 6e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 6e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 6e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 6e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 7e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 7e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 8e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-05 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-05 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 5e-05 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 5e-05 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 5e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 8e-05 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 2e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 3e-04 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 8e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 8e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 8e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 723 bits (1867), Expect = 0.0
Identities = 269/659 (40%), Positives = 376/659 (57%), Gaps = 19/659 (2%)
Query: 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACET 166
TT + +FL L+ S+ L+P SG +VIV VLD+G+WPES SF D G+ +P WKG C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 167 GTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEG 226
GT FNAS CNRKLIGA YF +G A ++ S RD DGHGTH AS AG+ +G
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNI--TMNSARDTDGHGTHCASITAGNFAKG 118
Query: 227 ASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTS 286
S FGYA GTARG+A RAR+A YK + G F+SD++AA++QA+ D V+++S+S G
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFI 178
Query: 287 DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSL 346
Y+D+++I +F AM KG+LVS SAGN GP SL+N +PWI V +G DR F ++L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGV 406
GNG G SL+ + P +Y S+ ++ L E IV+CD
Sbjct: 239 GNGLKIRGWSLFPAR-AFVRDSPVIYNKTLSDCSSEELLSQ----VENPENTIVICDDNG 293
Query: 407 NARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKP 466
+ Q + +A + ++ + + P V +K G + +Y+ + P
Sbjct: 294 DFSDQMRIITRARLKAAIFISE---DPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTP 350
Query: 467 TVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLA 526
T TI F+ T + +P+PVVAA S+RGP+ + KPD++APGV ILA + V T +
Sbjct: 351 TATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIG 410
Query: 527 TDSRR-VSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQ 585
T+ + + SGTSM+ PH +G+AA+LKAAHPEWSP+AIRSA+MTTA + ++
Sbjct: 411 TNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470
Query: 586 DIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFT 645
D KA+TP D GAGHV+P AL+PGLVYD T DY+ LC+LN+T Q ++AR +
Sbjct: 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSAS 530
Query: 646 CDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPP-GTYKVFITSSTGPG 704
+ S AD NYPSF + + K+ R++TNVG TYK + +
Sbjct: 531 HNCSN--PSADLNYPSFIALYSIEGNFTLLEQ-KFKRTVTNVGKGAATYKAKLKAP--KN 585
Query: 705 VKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEW--SDGKYIVGSPIAISW 761
ISV P L F NEK+SYT+T + + + W +G + V SPI S
Sbjct: 586 STISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 689 bits (1779), Expect = 0.0
Identities = 267/661 (40%), Positives = 365/661 (55%), Gaps = 48/661 (7%)
Query: 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACET 166
TTRS +FLG + + S S ++VGVLDTG+WPES SFDD G P P WKG CET
Sbjct: 1 TTRSWDFLGFPLT--VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 167 GTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEG 226
NF CNRK+IGAR + G + G ++ PRD +GHGTHTASTAAG +V
Sbjct: 59 SNNFR---CNRKIIGARSYHIGRPISPGDVN------GPRDTNGHGTHTASTAAGGLVSQ 109
Query: 227 ASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTS 286
A+L+G GTARG AR+AAYKVCW GC +DILAA + AI D V+++S+S+GG
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 287 -DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVS 345
Y+ D++AIG+F A+E+GIL S SAGN GP+ ++ ++++PW+ +V A T+DR F V
Sbjct: 170 RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229
Query: 346 LGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNA----TNGNLCMMDTLIPEKVAGKIVM 401
+GNGQ++ GVS+ + P V + N + C ++ P + GKIV+
Sbjct: 230 IGNGQSFQGVSINTF---DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVV 286
Query: 402 CDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLV 461
C+ K+ G VL + AD++ LP++ + A Y+
Sbjct: 287 CEASFGPH----EFFKSLDGAAGVLMT---SNTRDYADSYPLPSSVLDPNDLLATLRYIY 339
Query: 462 SDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVG 521
S P TI F+ T + +PVV +FSSRGPN T +++KPD+ PGV ILA W
Sbjct: 340 SIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP 398
Query: 522 PTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNG 581
G R FNIISGTSMSCPH++G+A +K +P WSPAAI+SALMTTA
Sbjct: 399 VGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN--- 452
Query: 582 QKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLAR 641
A F +G+GHVNP+ A+ PGLVYD DY+ FLC Y + +
Sbjct: 453 ------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG 506
Query: 642 RKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPP-GTYKVFITSS 700
C + + D NYPSF + + S S + + R+LT+V P TY+ I++
Sbjct: 507 DYSACTSGNTGRVWDLNYPSFGL----SVSPSQTFNQYFNRTLTSVAPQASTYRAMISAP 562
Query: 701 TGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAIS 760
G+ ISV P LSF ++KS+T+T A L WSDG + V SPI I+
Sbjct: 563 --QGLTISVNPNVLSFNGLGDRKSFTLTVR--GSIKGFVVSASLVWSDGVHYVRSPITIT 618
Query: 761 W 761
Sbjct: 619 S 619
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 501 bits (1292), Expect = e-166
Identities = 110/615 (17%), Positives = 194/615 (31%), Gaps = 70/615 (11%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFN----ASNCNRKLIGARYFAR 187
+V V+D G +++ T K E + N K+ +++
Sbjct: 19 TVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSK 78
Query: 188 GYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVA 247
D HGTH + +G+ A G A++
Sbjct: 79 DG--------------KTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLL 120
Query: 248 AYKVCWVGGC--FSSDILAAIEQAIDDNVNVLSMSLGG--GTSDYYKDSVAIGAFAAMEK 303
+V V G ++ + AI AI+ V++MS G D A K
Sbjct: 121 LMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSK 180
Query: 304 GILVSCSAGNAGPSSYSLS---NVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKG 360
G+ + SAGN P VG S + + K
Sbjct: 181 GVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKT 240
Query: 361 DGLPGKLLPFVYAGNASNATNGNL----CMMDTLIPEKVAGKIVMCDRGVNARVQKGAVV 416
K +P + + + V GKI + +RG K A
Sbjct: 241 ADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKA 300
Query: 417 KAAGGLGMVLANTESNGEEL-VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGT 475
K AG +G+++ + + G + + + +PA + +K G +K P+ T+T
Sbjct: 301 KKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDN----PQKTITFNATPK 356
Query: 476 KVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFN 535
+ ++ FSS G + +KPD+ APG +IL+ + +
Sbjct: 357 VLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYA 401
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKN-GQKLQDIATGKAST 594
+SGTSMS P V+G+ LL+ + P S + A + L D +
Sbjct: 402 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 461
Query: 595 PFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSL 654
P GAG V+ A + +T D LN + + D +
Sbjct: 462 PRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNKSDKPQELYY 519
Query: 655 ADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATL 714
+ V+ + + + +T + + +V +V
Sbjct: 520 -QATVQTDKVDGKHFALAPKVLYETSWQKIT-IPANSSKQV------------TVPIDAS 565
Query: 715 SFTQANEKKSYTVTF 729
F++ + F
Sbjct: 566 RFSKDLLAQMKNGYF 580
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-33
Identities = 85/433 (19%), Positives = 147/433 (33%), Gaps = 74/433 (17%)
Query: 196 IDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WV 254
+ P +++ HGTH A T A G A + KV
Sbjct: 50 NSGTGNWYQPGNNNAHGTHVAGTIAAIANNEG-----VVGVMPN--QNANIHIVKVFNEA 102
Query: 255 GGCFSSDILAAIEQAIDDN-VNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAG 312
G +SS ++AAI+ ++ NV++MSLGG + ++++ G+L+ +AG
Sbjct: 103 GWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAG 158
Query: 313 NAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGN-------GQN-YSGVSLYKGDGLP 364
NAG SSYS + +V A + D AF + G+ S V++ +G
Sbjct: 159 NAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLAD 218
Query: 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGM 424
+ Y N N + P + + A + +
Sbjct: 219 ITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICL 278
Query: 425 VLANTESNG-------EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKV 477
V + A +++ + D +T+ V
Sbjct: 279 VERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV----PSV 334
Query: 478 GVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNII 537
V+ + +A + G ++ + G +
Sbjct: 335 SVDRATGLALKAKLGQST--------TVSNQGNQ---------------------DYEYY 365
Query: 538 SGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFD 597
+GTSM+ PHVSG+A L+ + HPE S + +R+AL TA D++
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA----------DDLSVAGRDNQT- 414
Query: 598 HGAGHVNPVSALN 610
G G +N V+A
Sbjct: 415 -GYGMINAVAAKA 426
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-25
Identities = 55/332 (16%), Positives = 104/332 (31%), Gaps = 73/332 (21%)
Query: 32 YIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQR 91
Y++ + + + E ++ +IL+ + ++ GF +++ + E +
Sbjct: 78 YVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKL 137
Query: 92 PGILSVLPELKYELHTTRSPEFLGLD------KSANLFPTSGSASEVIVGVLDTGVWPES 145
P + + E + P L+ A+ + S V V +LDT + +
Sbjct: 138 PHVDYI--EEDSSVFAQSIPW--NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDH 193
Query: 146 KSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSP 205
+ R + D ++ +
Sbjct: 194 REI--------------------------------EGRVMV-TDFENVPEEDGTRFHRQA 220
Query: 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV--CWVGGCFSSDIL 263
D HGTH A +G G+A A + + +V C G S L
Sbjct: 221 SKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVLNCQ-GKGTVSGTL 265
Query: 264 AAIEQAIDDNVN------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGP- 316
+E + V+ + L GG S + G+++ +AGN
Sbjct: 266 IGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFRDD 321
Query: 317 -SSYSLSNVAPWITTVGAGTLDRDFPAFVSLG 347
YS ++ AP + TVGA +LG
Sbjct: 322 ACLYSPAS-APEVITVGATNAQDQPVTLGTLG 352
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 4e-14
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APG +I+ S T + SGTS + HV+G+AA++ +A PE +
Sbjct: 360 DLFAPGEDIIGASSD--CSTCFVS---------QSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 564 AAIRSALMTTA 574
A +R L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 7e-25
Identities = 58/251 (23%), Positives = 94/251 (37%), Gaps = 28/251 (11%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+ FSSRGP + LKP+++APG I+A + + GT+M+
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARAS----GTSMGQPINDYYTAAPGTAMAT 362
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
PHV+G+AALL AHP W+P +++AL+ TA DI +GAG VN
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA-----------DIVKPDEIADIAYGAGRVN 411
Query: 605 PVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAV 664
A LT Y+ + Q T S +D + +
Sbjct: 412 AYKAAYYDNYAKLTFTGYVS---NKGSQSHQFTISGAGFVTATLYWDNSGSDLDLYLYDP 468
Query: 665 NIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPG-------VKISVEPATLSFT 717
N S ++ + + GT+ + + S +G S+ + +
Sbjct: 469 NGNQVDYSY-TAYYGFEKVGYYNPTAGTWTIKVVSYSGSANYQVDVVSDGSLGQPSGGGS 527
Query: 718 QANEKKSYTVT 728
+ + S T
Sbjct: 528 EPSPSPSPEPT 538
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 74/309 (23%), Positives = 122/309 (39%), Gaps = 76/309 (24%)
Query: 63 AEILYTYDNVIHGFSTQLTREEAESL-----------EQRPGILSVLPELKYELHTTRSP 111
A+I Y Y +I + ++ ++ + Q G+ + + Y +
Sbjct: 60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFI--QEDYVVKVAVET 116
Query: 112 EFLGLDKSA------NLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACE 165
E GLD+SA N++ S + +G++DTG+
Sbjct: 117 E--GLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--------------- 159
Query: 166 TGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVE 225
K+IG F G +P DD+GHGTH AS AAG+
Sbjct: 160 ------------KVIGWVDFVNG-------------KTTPYDDNGHGTHVASIAAGTGAA 194
Query: 226 GASLFGYAAGTARGMATRARVAAYKVC-WVGGCFSSDILAAIEQAIDD----NVNVLSMS 280
G +GMA A++ KV G SDI+ ++ A+ + + V+++S
Sbjct: 195 SN-------GKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLS 247
Query: 281 LGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSN--VAPWITTVGAGTLDR 338
LG S DS++ A + G++V +AGN+GP+ Y++ + A + TVGA
Sbjct: 248 LGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYD 307
Query: 339 DFPAFVSLG 347
F S G
Sbjct: 308 VITDFSSRG 316
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 9e-24
Identities = 68/317 (21%), Positives = 99/317 (31%), Gaps = 85/317 (26%)
Query: 63 AEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTRSPEFLGLDKSANL 122
I+Y + I + L++ PG+ V + + L S G + A
Sbjct: 24 GHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQT 82
Query: 123 FP--------------TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGT 168
P T GS S + V VLDTGV +
Sbjct: 83 IPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAW------------CV 130
Query: 169 NFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGAS 228
+ + + + D +GHGTH T A
Sbjct: 131 STLRGKVST-----------------------KLRDCADQNGHGTHVIGTIAAL------ 161
Query: 229 LFGYAAGTARGMATRARVAAYKVCWV-GGCFSSDILAAIEQAI----------------- 270
G G+A ++ + +V G SDI IEQAI
Sbjct: 162 --NNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG 218
Query: 271 ---DDNVNVLSMSLGG-GTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAP 326
DD V+SMSLGG Y D + A GI++ ++GN G S S P
Sbjct: 219 DPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYP 274
Query: 327 WITTVGAGTLDRDFPAF 343
+ VGA + + +F
Sbjct: 275 EVIAVGAIDSNDNIASF 291
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 48/139 (34%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R P ++ APGV+IL+ + P S+ + GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTY-----PDD--------SYETLMGTAMAT 324
Query: 545 PHVSGLAALLKAAH-------------PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGK 591
PHVSG+ AL++AA+ + S +R L TA D+
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA----------DDLGPTG 374
Query: 592 ASTPFDHGAGHVNPVSALN 610
+ G G V A+
Sbjct: 375 WDADY--GYGVVRAALAVQ 391
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 6e-22
Identities = 38/234 (16%), Positives = 70/234 (29%), Gaps = 20/234 (8%)
Query: 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGY 189
++ + ++D F+ + V W E + + +G
Sbjct: 49 PQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEP-ITPEDYAAFQSIRDQGL--KGK 105
Query: 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAY 249
E ++K + H H ST G G+A RV
Sbjct: 106 EKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSPVF----------GIAPNCRVINM 155
Query: 250 KVCWVGGCFSS------DILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAF-AAME 302
V ++ AI+ A++ N++ + T + + + A +
Sbjct: 156 PQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQD 215
Query: 303 KGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVS 356
+L+ GN S+ L V P VGA +D F + G G+
Sbjct: 216 NNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEGIL 269
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-17
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 31/130 (23%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
FS+ G N+ K ++APG IL P L +GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVRL------------TGTSMAA 295
Query: 545 PHVSGLAALLKAAHPE----WSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGA 600
P ++G++ALL + + A+R+AL+ TA P
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA----------IPCDPEVVEEPERCLR 345
Query: 601 GHVNPVSALN 610
G VN A+
Sbjct: 346 GFVNIPGAMK 355
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFSSDI 262
S +D +GHGTH A T A + G G+A A + A KV G S I
Sbjct: 55 STQDGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVLGASGSGSVSSI 105
Query: 263 LAAIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL 321
+E A ++ ++V ++SLG + S + +V +A +G+LV ++GN+G S S
Sbjct: 106 AQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSGAGSISY 161
Query: 322 SNVAPWITTVGAGTLDRDFPAFVSLGN 348
VGA + + +F G
Sbjct: 162 PARYANAMAVGATDQNNNRASFSQYGA 188
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 36/125 (28%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
A+FS G D++APGVN+ + + G+ ++ ++GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTYPGS-------------TYASLNGTSMAT 218
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
PHV+G AAL+K +P WS IR+ L TA + +G+G VN
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTAT---------------SLGSTNLYGSGLVN 263
Query: 605 PVSAL 609
+A
Sbjct: 264 AEAAT 268
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 475 TKVGVEPSPVVAAFSSRGP----NSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSR 530
V + VA +SSRG + ++ APG ++ + W
Sbjct: 193 ENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG----------- 241
Query: 531 RVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
+N ISGTSM+ PHVSGLAA + A +P S +RS L A
Sbjct: 242 --GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 4e-20
Identities = 46/146 (31%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVG 255
+ + S D +GHGTH A TA G+ G G+A A + AYKV G
Sbjct: 57 ATTPINNSCTDRNGHGTHVAGTALADG--GSDQAGIY-----GVAPDADLWAYKVLLDSG 109
Query: 256 GCFSSDILAAIEQAIDD-----NVNVLSMSLGGG-TSDYYKDSVAIGAFAAMEKGILVSC 309
+S DI AAI A D ++SMSLG + +V A KG+L+
Sbjct: 110 SGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVA 165
Query: 310 SAGNAGPSSYSLSN--VAPWITTVGA 333
+AGN+G S ++ P V A
Sbjct: 166 AAGNSGYSQGTIGYPGALPNAIAVAA 191
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 98.7 bits (245), Expect = 3e-21
Identities = 52/327 (15%), Positives = 108/327 (33%), Gaps = 36/327 (11%)
Query: 43 ASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELK 102
+ + S +++ + L +D + +R+ E Q PG S LP K
Sbjct: 118 VGLKSFSDLLPSKVRNNIVAQAKLKHWDKPHKTATANASRKIVEFESQNPGEASKLPWDK 177
Query: 103 YELHTTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKG 162
L E L+ ++ ++ + I+ W + DT
Sbjct: 178 KILKENLDFELEMLNSYEKVYGDIKTSYDCIL-FPTADGW---LTIVDTTEQGDLDQALR 233
Query: 163 ACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGS 222
E N + L + DE + HGTH +S A+G+
Sbjct: 234 IGEYSRTHETRNVDDFLSISVNVH----------DEGNVLEVVGMSSPHGTHVSSIASGN 283
Query: 223 VVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFS--SDILAAIEQAIDDNVN---- 275
+++ G+A A++ + + G + ++ A+ + ++ +
Sbjct: 284 ---------HSSRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRI 334
Query: 276 -VLSMSLGGGTSDYYKDSVAIGA-FAAMEKGILVSCSAGNAGPSSYSLSNVA----PWIT 329
V++MS G + + + G++ SAGN GP+ ++ P +
Sbjct: 335 DVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLI 394
Query: 330 TVGAGTLDRDFPAFVSLGNGQNYSGVS 356
VGA + A ++ + +
Sbjct: 395 GVGAYVSPQMMEAEYAMREKLPGNVYT 421
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 95.3 bits (236), Expect = 3e-20
Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 39/237 (16%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
V ++SR P + APG I + + +++GTSM+
Sbjct: 419 VYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTMS-----------KSQLMNGTSMAA 465
Query: 545 PHVSGLAAL----LKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGA 600
PHV+G AL LK + E+SP +I+ A+ TA PF G
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT-------------KLGYVDPFAQGH 512
Query: 601 GHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRY--SLADFN 658
G +N A + + D+ L F ++ + + R+ S Y +
Sbjct: 513 GLLNVEKAFEHLTEHRQSKDNMLRF--SVRVGNNADKGIHLRQGVQRNSIDYNVYIEPIF 570
Query: 659 YPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLS 715
Y + + + + L ++ G S + + V+P L
Sbjct: 571 YNDKEADPKDKFNFNVRLNLIASQPWVQCG-----AFLDLSYGTRSIAVRVDPTGLQ 622
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 19/151 (12%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFS-SDI 262
D +GHGTH A T A G G+A + A KV G S S I
Sbjct: 56 YNTDGNGHGTHVAGTVAAL--------DNTTGVL-GVAPSVSLYAVKVLNSSGSGSYSGI 106
Query: 263 LAAIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSL 321
++ IE A + ++V++MSLGG + S K +V A +G++V +AGN+G S +
Sbjct: 107 VSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNSGNSGSTN 162
Query: 322 SNV----APWITTVGAGTLDRDFPAFVSLGN 348
+ + VGA + + +F S+G
Sbjct: 163 TIGYPAKYDSVIAVGAVDSNSNRASFSSVGA 193
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 6e-21
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 36/125 (28%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
A+FSS G + +++APG + + + ++ ++GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTYPTN-------------TYATLNGTSMAS 223
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
PHV+G AAL+ + HP S + +R+ L +TA + + F +G G +N
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA----------TYLG-----SSFYYGKGLIN 268
Query: 605 PVSAL 609
+A
Sbjct: 269 VEAAA 273
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 6e-21
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 36/126 (28%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
A+FSS GP + D++APGV+I + G + +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
PHV+G AAL+ + HP W+ +RS+L T K F +G G +N
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT---------------KLGDSFYYGKGLIN 269
Query: 605 PVSALN 610
+A
Sbjct: 270 VQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 19/154 (12%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFS 259
E+ +D++ HGTH A T A + G G+A A + A KV G
Sbjct: 54 ETNPFQDNNSHGTHVAGTVAAL--------NNSIGVL-GVAPSASLYAVKVLGADGSGQY 104
Query: 260 SDILAAIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS 318
S I+ IE AI +N++V++MSLGG + S K +V A+ G++V +AGN G S
Sbjct: 105 SWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNEGTSG 160
Query: 319 YSLSNV----APWITTVGAGTLDRDFPAFVSLGN 348
S + P + VGA +F S+G
Sbjct: 161 SSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGP 194
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 28/161 (17%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV--CWV 254
D + + D++GHGTH A T A + +G G+A +A + K
Sbjct: 72 DYGGDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKALSGD- 121
Query: 255 GGCFSSDILAAIEQAIDD------NVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILV 307
G I AI A+D + +++MSLGG T S+ D+V A+ + V
Sbjct: 122 GSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSV 177
Query: 308 SCSAGNAGPSSYSLSNV-----APWITTVGAGTLDRDFPAF 343
C+AGN G + + VGA D F
Sbjct: 178 VCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDF 218
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-17
Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 38/130 (29%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
++ F++ + D++APGV I + + + + +SGT+M+
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAA 253
Query: 545 PHVSGLAALLKAAHPE-----WSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHG 599
PHV+G AL+ + S I + L+ A G + +G
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA------------TPIGFTAQAEGNG 301
Query: 600 AGHVNPVSAL 609
++ V +
Sbjct: 302 FLTLDLVERI 311
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 5e-19
Identities = 49/333 (14%), Positives = 91/333 (27%), Gaps = 99/333 (29%)
Query: 62 SAEILYTYDNVIHGFSTQLTREEAESLEQ-RPGILSVLPELKYELHTTRSPEFL------ 114
S ++Y +H ++T+ A +L + I + + + ++ +
Sbjct: 65 SLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLF 123
Query: 115 ----GLDKSANLFP----TSGSASEVIVGVLDTGV-----------WPESKSFDDTGLGP 155
++K N A+ + ++DTGV +SK+
Sbjct: 124 SRQWDMNKITNNGASYDDLPKHAN-TKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFR 182
Query: 156 VPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHT 215
+ + D GHGT
Sbjct: 183 GT----------EPEETGDVH---------------------------DVNDRKGHGTMV 205
Query: 216 ASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVN 275
+ + A G G+A + Y+V + AI QA +D
Sbjct: 206 SGQTS------------ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQ 253
Query: 276 VLSMSLGGGTSDYYKDSVAIGAFA-------------AMEKGILVSCSAGNAGPSSYSLS 322
V+++S+G D A +K +V +AGN G
Sbjct: 254 VINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQ 313
Query: 323 NVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355
+ G G + +D PA + V
Sbjct: 314 KLKLQREYQGNGEV-KDVPA--------SMDNV 337
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 8e-16
Identities = 26/136 (19%), Positives = 40/136 (29%), Gaps = 30/136 (22%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRV---------SFN 535
++ FS+ G N D+ APG + V + +
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 536 IISGTSMSCPHVSGLAALLKAA-HPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAST 594
+GT+++ P VSG AL+ H E P L
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSRY--------- 452
Query: 595 PFDHGAGHVNPVSALN 610
G G ++ ALN
Sbjct: 453 ----GHGELDVYKALN 464
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 7e-19
Identities = 56/232 (24%), Positives = 80/232 (34%), Gaps = 67/232 (28%)
Query: 125 TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARY 184
T GS+ + V+DTGV G G +F ++ +
Sbjct: 27 TKGSSG-QEIAVIDTGVDYTHPDL------------DGKVIKGYDFVDNDYD-------- 65
Query: 185 FARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRA 244
P D + HGTH A AA + G A GMA
Sbjct: 66 --------------------PMDLNNHGTHVAGIAAAE---TNNATGIA-----GMAPNT 97
Query: 245 RVAAYKVCWV-GGCFSSDILAAIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAME 302
R+ A + G SDI AI A D V+++SLG + +++V A
Sbjct: 98 RILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWN 153
Query: 303 KGILVSCSAGNAG------PSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGN 348
KG +V +AGN G P+SY + VGA +F + G
Sbjct: 154 KGSVVVAAAGNNGSSTTFEPASY------ENVIAVGAVDQYDRLASFSNYGT 199
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 38/135 (28%)
Query: 477 VG-VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFN 535
VG V+ +A+FS+ G D++APGV+I++ +G +
Sbjct: 182 VGAVDQYDRLASFSNYGT--------WVDVVAPGVDIVSTITGN-------------RYA 220
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTP 595
+SGTSM+ PHV+GLAALL + + IR A+ TA I + T
Sbjct: 221 YMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTA----------DKI----SGTG 264
Query: 596 FDHGAGHVNPVSALN 610
G +N +A+
Sbjct: 265 TYFKYGRINSYNAVT 279
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 7e-19
Identities = 53/267 (19%), Positives = 81/267 (30%), Gaps = 28/267 (10%)
Query: 482 SPVVAAFSSRGPNSITPELLKPDMIAPGVNIL-----AGWSGAVGPTGLATDSRRVSFNI 536
+ VA FSSR + APGV IL G G + +++
Sbjct: 325 TFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376
Query: 537 ISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPF 596
GTSM+ PHV+G+ A+L P P IR L TA+
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF------------DFNGNGWDH 424
Query: 597 DHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQIN---SLARRKFTCDASKRYS 653
D G G V +AL L V+++ + S+ R +C +K
Sbjct: 425 DTGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGP 484
Query: 654 LADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPAT 713
+P + PG Y + + + +
Sbjct: 485 DGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVS 544
Query: 714 LSFTQANEKKSYTVTFTVSSMPSNTNS 740
TQ N + T+ S+ S
Sbjct: 545 PDATQLNVNFNSTLQVKFSTNLSTLKD 571
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 8e-14
Identities = 36/152 (23%), Positives = 51/152 (33%), Gaps = 34/152 (22%)
Query: 197 DESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC---- 252
+E GTH A T A G G+A A++ +
Sbjct: 186 EELPAGTDSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPA 236
Query: 253 ---WVGGCFSSDILAAIEQAIDDNVNVLSMSLGG-GTSDYYKDSVAIGAFAAMEKGILVS 308
G + A I A D V++ S GG G S K++ AME G+++
Sbjct: 237 LVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMV 292
Query: 309 CSAGNAG-------PSSYSLSNVAPWITTVGA 333
SAGN P+ Y P + V A
Sbjct: 293 VSAGNNTSDSHHQYPAGY------PGVIQVAA 318
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 9e-19
Identities = 46/216 (21%), Positives = 76/216 (35%), Gaps = 54/216 (25%)
Query: 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGY 189
S + ++DTGV G G +F ++
Sbjct: 30 SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFVDND--------------- 62
Query: 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAY 249
+P++ +GHGTH A AA + G A G A +A + A
Sbjct: 63 -------------STPQNGNGHGTHCAGIAAAV---TNNSTGIA-----GTAPKASILAV 101
Query: 250 KVC-WVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILV 307
+V G + + I A D V+S+SLGG + + +V A KG +V
Sbjct: 102 RVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVV 157
Query: 308 SCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAF 343
+AGNAG ++ + V + + + +F
Sbjct: 158 VAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSF 193
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 38/135 (28%)
Query: 477 VG-VEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFN 535
V + + ++FS+ G D+ APG +I + + PT ++
Sbjct: 181 VASTDQNDNKSSFSTYGSW--------VDVAAPGSSIYSTY-----PTS--------TYA 219
Query: 536 IISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTP 595
+SGTSM+ PHV+G+A LL + S + IR+A+ T A + T
Sbjct: 220 SLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENT--------------ADKISGTG 263
Query: 596 FDHGAGHVNPVSALN 610
G VN A+
Sbjct: 264 TYWAKGRVNAYKAVQ 278
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 4e-18
Identities = 41/224 (18%), Positives = 67/224 (29%), Gaps = 51/224 (22%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
IV V DTG+ +++G +N
Sbjct: 24 QIVAVADTGLDTGRNDSSM------HEAFRGKITALYALGRTN----------------- 60
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
+ D +GHGTH A + G+ T +GMA +A + +
Sbjct: 61 ------------NANDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSI 97
Query: 252 CWVGGCFS---SDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVS 308
GG S++ QA + + S G + Y + + +
Sbjct: 98 MDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTIL 157
Query: 309 CSAGNAGPSSYSLSN--VAPWITTVGAGTLDRDFPAFVSLGNGQ 350
+AGN GP+ ++S A TVGA R +
Sbjct: 158 FAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINH 201
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-17
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
VA FSSRGP +KPD++APG IL+ S + + + + GTSM+
Sbjct: 202 VAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMAT 258
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
P V+G A L+ + + +L+ A ++ G + G G V
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAA-------DIGLGYPNGNQGWGRVT 311
Query: 605 PVSALNPGLVYD 616
+LN V +
Sbjct: 312 LDKSLNVAYVNE 323
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 6e-18
Identities = 47/233 (20%), Positives = 74/233 (31%), Gaps = 46/233 (19%)
Query: 130 SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGY 189
V+V V+DTG+ D + G + + + + + + +
Sbjct: 32 QNVVVAVVDTGILHHR---DLNA-----NVLPGYDFISNSQISLDGDGR-DADPFDEGDW 82
Query: 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAY 249
K D HG+H A T A G A G+A A+V
Sbjct: 83 FDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNR---IGVA-----GVAYGAKVVPV 134
Query: 250 KVCWVGGCFSSDILAAIEQAIDDNV----------NVLSMSLGGGT--SDYYKDSVAIGA 297
+ G + SDI + A + V++MSLG S + +
Sbjct: 135 RALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID--- 191
Query: 298 FAAMEKGILVSCSAGNAG-------PSSYSLSNVAPWITTVGAGTLDRDFPAF 343
A G LV +AGN P+S + +VGA T +F
Sbjct: 192 -RATRLGALVVVAAGNENQNASNTWPTSC------NNVLSVGATTSRGIRASF 237
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 31/129 (24%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FS+ G + D+ APG +IL+ +G +++ ++GTSM+ P
Sbjct: 235 ASFSNYGVD--------VDLAAPGQDILSTV-----DSGTRRPVSD-AYSFMAGTSMATP 280
Query: 546 HVSGLAALLKAA----HPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601
HVSG+AAL+ +A + +PA ++ L++T G+G
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTT----------SPFNGRLDRA---LGSG 327
Query: 602 HVNPVSALN 610
V+ +A+N
Sbjct: 328 IVDAEAAVN 336
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 57/241 (23%), Positives = 78/241 (32%), Gaps = 70/241 (29%)
Query: 125 TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARY 184
T GS S + V VLDTGV + +
Sbjct: 24 TDGSVSVIQVAVLDTGVDYDHPDL------------AANIAWCVSTLRG----------- 60
Query: 185 FARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRA 244
S + + D +GHGTH T A G G+A
Sbjct: 61 ------------KVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV-GVAPGV 99
Query: 245 RVAAYKVC-WVGGCFSSDILAAIEQAI--------------------DDNVNVLSMSLGG 283
++ + +V G SDI IEQAI DD V+SMSLGG
Sbjct: 100 QIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGG 159
Query: 284 -GTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPA 342
Y D + A GI++ ++GN G S S P + VGA + + +
Sbjct: 160 PADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIAS 215
Query: 343 F 343
F
Sbjct: 216 F 216
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 48/139 (34%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
+A+FS+R P ++ APGV+IL+ + S+ + GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 545 PHVSGLAALLKAAH-------------PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGK 591
PHVSG+ AL++AA+ + S +R L TA D+
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA----------DDLGPTG 299
Query: 592 ASTPFDHGAGHVNPVSALN 610
+ G G V A+
Sbjct: 300 WDADY--GYGVVRAALAVQ 316
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-17
Identities = 34/206 (16%), Positives = 58/206 (28%), Gaps = 45/206 (21%)
Query: 406 VNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPK 465
++ AA G N ++ +L A + PA + DP
Sbjct: 167 SRMGRNNDRLIVAAVG------NDGADIRKLSAQQRIWPA-----AYHPVSSVNKKQDPV 215
Query: 466 PTVT-ILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTG 524
V + S G N + D+ APG NI P
Sbjct: 216 IRVAALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLR-----PDA 263
Query: 525 LATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKL 584
SGTS + VSG+ A + + +P + ++ L+ +A
Sbjct: 264 --------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESA---------- 305
Query: 585 QDIATGKASTPFDHGAGHVNPVSALN 610
+ +N A++
Sbjct: 306 DKYPSLVDKV---TEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 33/172 (19%)
Query: 203 KSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFS--- 259
K HGT AS A G G+ A +++ +V G S
Sbjct: 81 KKSEALYIHGTAMASLIASRY-------GIY-----GVYPHALISSRRVIPDGVQDSWIR 128
Query: 260 -SDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAG--- 315
+ + + ++++S G + + L+ + GN G
Sbjct: 129 AIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADI 188
Query: 316 ----------PSSY----SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353
P++Y S++ + V A R V G G S
Sbjct: 189 RKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITGS 240
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYK 250
A+ G D D +GHGTH A T GS G+A V +
Sbjct: 53 ASSG-YDFIDNDYDATDCNGHGTHVAGTIGGSTY--------------GVAKNVNVVGVR 97
Query: 251 V--CWVGGCFSSDILAAIEQAIDDNVN--VLSMSLGGGTSDYYKDSVAIGAFAAMEKGIL 306
V C G +S ++A I ++ V +MSLGGG S D+V AA+ GI
Sbjct: 98 VLNCS-GSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGIT 152
Query: 307 VSCSAGNAGP--SSYSLSNVAPWITTVGAGTLDRDFPAF 343
+AGN +YS + A TVG+ T + +F
Sbjct: 153 FVVAAGNDNSNACNYSPAR-AADAITVGSTTSNDSRSSF 190
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
++FS+ G D+ APG +I + W + T N ISGTSM+ P
Sbjct: 188 SSFSNYGTCL--------DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASP 228
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G+AAL +P SPA + + L T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 26/149 (17%)
Query: 201 ESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV--CWVGGCF 258
D +GHGTH A T GS G+A + +V C G
Sbjct: 60 NDADSSDCNGHGTHVAGTIGGSQY--------------GVAKNVNIVGVRVLSCS-GSGT 104
Query: 259 SSDILAAIEQAIDDNVN--VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGP 316
+S +++ ++ + V +MSLGGG S +V A++ G+ +AGN+
Sbjct: 105 TSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAGNSNA 160
Query: 317 --SSYSLSNVAPWITTVGAGTLDRDFPAF 343
+ S + P TVG+ T +F
Sbjct: 161 DACNTSPAR-VPSGVTVGSTTSSDSRSSF 188
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
++FS+ G D+ APG I + W + ISGTSM+ P
Sbjct: 186 SSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISGTSMATP 224
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G+AAL + +P + L + A
Sbjct: 225 HVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 30/170 (17%)
Query: 188 GYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVA 247
+ D ++ + D HGTH A +G G+A A +
Sbjct: 51 TDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMR 96
Query: 248 AYKV--CWVGGCFSSDILAAIEQAIDDNVN------VLSMSLGGGTSDYYKDSVAIGAFA 299
+ +V C G S L +E + V+ + L GG S +
Sbjct: 97 SLRVLNCQ-GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----R 151
Query: 300 AMEKGILVSCSAGNAGP--SSYSLSNVAPWITTVGAGTLDRDFPAFVSLG 347
G+++ +AGN YS ++ AP + TVGA +LG
Sbjct: 152 LARAGVVLVTAAGNFRDDACLYSPAS-APEVITVGATNAQDQPVTLGTLG 200
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 1e-14
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 504 DMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563
D+ APG +I+ S T + SGTS + HV+G+AA++ +A PE +
Sbjct: 208 DLFAPGEDIIGASSD--CSTCFVS---------QSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 564 AAIRSALMTTA 574
A +R L+ +
Sbjct: 257 AELRQRLIHFS 267
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFSSDI 262
+ +D +GHGTH A T G G+A + A +V G +S +
Sbjct: 63 NGQDCNGHGTHVAGTIGGVTY--------------GVAKAVNLYAVRVLDCNGSGSTSGV 108
Query: 263 LAAIEQAIDDNVN--VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGP--SS 318
+A ++ ++ V +MSLGGG S ++V ++ G++ + +AGN +
Sbjct: 109 IAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGNDNANACN 164
Query: 319 YSLSNVAPWITTVGAGTLDRDFPAF 343
YS + TVGA T +F
Sbjct: 165 YSPAR-VAEALTVGATTSSDARASF 188
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
A+FS+ G D+ APG +I + W T T ++GTSM+ P
Sbjct: 186 ASFSNYGSCV--------DLFAPGASIPSAWYT--SDTATQT---------LNGTSMATP 226
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+G+AAL +P +PA++ SA++ A
Sbjct: 227 HVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 29/150 (19%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFSSDI 262
+ RD GHGTH A T G+A + + KV G S+I
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFGVKVLDDSGSGSLSNI 108
Query: 263 LAAIEQAIDDNVN-------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAG 315
+A ++ D + V SMSLGGG S + A G+ V+ +AGN
Sbjct: 109 IAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAGNDN 164
Query: 316 P--SSYSLSNVAPWITTVGAGTLDRDFPAF 343
++ S ++ P + TVGA + F
Sbjct: 165 RDAANTSPAS-EPTVCTVGATDSNDVRSTF 193
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
+ FS+ G D+ APG +I + W G G T N ISGTSM+ P
Sbjct: 191 STFSNYGRVV--------DIFAPGTSITSTWIG--GRT-----------NTISGTSMATP 229
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
H++GLAA L S A+ + T +
Sbjct: 230 HIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 31/151 (20%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV--CWVGGCFSSD 261
S RD +GHGTH A T G+A + ++ KV G S
Sbjct: 62 SSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFGVKVLDDN-GSGQYST 106
Query: 262 ILAAIEQAIDDNVN-------VLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNA 314
I+A ++ D N V S+SLGGG S + A G++V+ +AGN
Sbjct: 107 IIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAGNN 162
Query: 315 GP--SSYSLSNVAPWITTVGAGTLDRDFPAF 343
+YS ++ P + TVGA +F
Sbjct: 163 NADARNYSPAS-EPSVCTVGASDRYDRRSSF 192
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 22/89 (24%)
Query: 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545
++FS+ G D+ PG +IL+ W G S ISGTSM+ P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTDILSTWIGG-------------STRSISGTSMATP 228
Query: 546 HVSGLAALLKAAHPEWSPAAIRSALMTTA 574
HV+GLAA L + A+ + TA
Sbjct: 229 HVAGLAAYLMTLGKT-TAASACRYIADTA 256
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 2e-08
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 23/171 (13%)
Query: 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAI 266
DD HGT A A G+ A+++ ++ G + D A++
Sbjct: 96 SDDYHGTRCAGEIAAK--------KGNNFCGVGVGYNAKISGIRIL-SGDITTEDEAASL 146
Query: 267 EQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAME---------KGILVSCSAGNAGPS 317
+ D ++ S S G + + A+ KG + ++GN G
Sbjct: 147 IYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTR 205
Query: 318 ----SYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLP 364
+Y + + T+GA P + + S G+ +
Sbjct: 206 GDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYIH 256
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 4e-07
Identities = 18/89 (20%), Positives = 34/89 (38%)
Query: 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575
+S G ++D N GTS + P +G+ LL A+P + ++ + +A
Sbjct: 247 YSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 306
Query: 576 VSYKNGQKLQDIATGKASTPFDHGAGHVN 604
KN + +G G ++
Sbjct: 307 GLEKNADGDWRDSAMGKKYSHRYGFGKID 335
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 521 GPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKN 580
+ TD R+ +GTS S P +G+ AL A+ + ++ ++ T+ ++ N
Sbjct: 241 EKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLN 300
Query: 581 GQKLQDIATGKASTPFDHGAGHVNPVSALN 610
G+ + +G G ++ + +
Sbjct: 301 ADDWATNGVGRKVSH-SYGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 23/157 (14%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDIL 263
+ +D+ HGT A A G G+A AR+ + + G + +
Sbjct: 80 TQMNDNRHGTRCAGEVAAVANNG---VCGV-----GVAYNARIGGVR--MLDGEVTDAVE 129
Query: 264 AAIEQAIDDNVNVLSMSLGG--------GTSDYYKDSVAIGAFAAME-KGILVSCSAGNA 314
A +++++ S S G G + +++ G G + ++GN
Sbjct: 130 ARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNG 189
Query: 315 G----PSSYSLSNVAPWITTVGAGTLDRDFPAFVSLG 347
G + + + ++ + T + P +
Sbjct: 190 GREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEAC 226
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 26 PDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEA 85
P Y++ + + + E ++ +IL+ + ++ GF +++ +
Sbjct: 47 PGT---YVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLL 103
Query: 86 ESLEQRPGILSV 97
E + P + +
Sbjct: 104 ELALKLPHVDYI 115
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 8/66 (12%), Positives = 27/66 (40%)
Query: 32 YIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQR 91
Y++ + + + E ++ +IL+ + ++ GF +++ + E +
Sbjct: 40 YVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKL 99
Query: 92 PGILSV 97
P + +
Sbjct: 100 PHVDYI 105
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 99/692 (14%), Positives = 190/692 (27%), Gaps = 206/692 (29%)
Query: 47 HHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTRE-EAESLEQRP-GILSVLPELKYE 104
HH H + ++ E Y Y +++ F + + ++ P ILS K E
Sbjct: 2 HHHHHMDF------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-----KEE 50
Query: 105 L-HTTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGP----VPSS 159
+ H S + + + LF T S E +V + F + L + S
Sbjct: 51 IDHIIMSKD--AVSGTLRLFWTLLSKQEEMV-----------QKFVEEVLRINYKFLMSP 97
Query: 160 WKGAC---ETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKES-KSPRDDDG---HG 212
K T +R + FA+ + L P + +++ R G
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 213 THTASTAAGSVVEGAS-LFGYAAGTARGMATRARVAAYKVCW--VGGCFSSDILAAIEQA 269
GS G + + A + + +K+ W + C S + + + Q
Sbjct: 158 ------VLGS---GKTWV---ALDVCLSYKVQCK-MDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGA-----FAAM--EKGILVSCSAGNAGPSSYSLS 322
+ ++ S +S+ +I A + E +LV L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------------LL 251
Query: 323 NVA-PWIT---TVGAGTL----DRDFPAFVSLGNGQNYSGV----SLYKGDGLPGKLLPF 370
NV + L + F+S + S +L + LL
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLL-- 307
Query: 371 VYAGNASNATNGNLCMMDTLIPEKVAG---KIVMCDRGVNARVQKGAVVKAAGGLGMVLA 427
+ C L E + ++ + ++
Sbjct: 308 ------LKYLD---CRPQDLPREVLTTNPRRLSII----------AESIR-------DGL 341
Query: 428 NTESNGEELVADAHLLPATAVGQKFGDAIK-SYLVSDPKPT------VTILFEGTKVGVE 480
T N + + D K I+ S V +P +++ +
Sbjct: 342 ATWDNWKHVNCD-----------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387
Query: 481 PSPVVAAF----SSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNI 536
P+ +++ + +L K + + + + +I
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSL-------------------VEKQPKESTISI 428
Query: 537 ISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTP- 595
S + AL H RS + Y + + P
Sbjct: 429 PSIYLELKVKLENEYAL----H--------RSIVD-----HYNIPKTFD---SDDLIPPY 468
Query: 596 -----FDHGAGHVNPVSALNPGLVYDLTVDDYL--GFL--------CALNYTASQINSLA 640
+ H H + + L +L FL A N + S +N+L
Sbjct: 469 LDQYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 641 R----RKFTCDASKRYSLADFNYPSFAVNIET 668
+ + + CD +Y F IE
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 45/338 (13%), Positives = 86/338 (25%), Gaps = 115/338 (34%)
Query: 2 KTFKSLISLLLVLGFFDVSVAAQNPDQRATYI-IH-MA---KSEMPAS----------FE 46
+ + L LL L + A + I + K+ + +
Sbjct: 135 QPYLKLRQALLEL-------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 47 HHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELH 106
W +LK+ + +L +++ T S + I S+ EL+ L
Sbjct: 182 FKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVW-PES-KSFDDTGLGPVPSSWKGAC 164
+ L L VL V ++ +F+ +C
Sbjct: 240 SKPYENCL-L-------------------VLL-NVQNAKAWNAFN------------LSC 266
Query: 165 ET-GTNFNASNCNRKLIGARYFAR---GYEATLGPIDESKE----------SKSPRDDDG 210
+ T + L A + TL P DE K PR+
Sbjct: 267 KILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPRE--- 321
Query: 211 HGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAI 270
T + S++ S+ R W + + I
Sbjct: 322 --VLTTNPRRLSII-AESI--------RDGLAT---------WDN--WKHVNCDKLTTII 359
Query: 271 DDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVS 308
+ ++NVL + + + +
Sbjct: 360 ESSLNVLEPAE---YRKMFDR------LSVFPPSAHIP 388
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 392 PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLAN---TESNGEELVADAHLLPATAV 448
+ + GKI + RG + K G +++ N + NG +DA + A +
Sbjct: 110 GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI 169
Query: 449 GQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPE 499
++ GDA+ + L + K T T+ G +V S V A N
Sbjct: 170 TKQEGDALAANLRAGEKITATVKVAGAEVKTLTSHNVIATKKPDANKKNTN 220
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.92 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.87 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.06 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.99 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.91 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.8 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.67 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.64 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.76 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.37 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.68 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.51 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.76 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.43 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 87.34 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 85.56 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 84.87 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 84.09 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-126 Score=1100.72 Aligned_cols=634 Identities=42% Similarity=0.694 Sum_probs=576.8
Q ss_pred CCCCCcccCCcCCCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecc
Q 004301 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFA 186 (762)
Q Consensus 107 ~~~s~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 186 (762)
++++|+|+|+.+..++|..+.+|+||+|||||||||++||+|.+.++.++|.+|+|.|+.|.+|+...||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 57899999998778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHH
Q 004301 187 RGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAI 266 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai 266 (762)
.+++... ++...+..+++|.+||||||||||||+.+++.+.+|++.|.+.||||+|+|++||+|+..|+..+++++||
T Consensus 81 ~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai 158 (649)
T 3i6s_A 81 KGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAM 158 (649)
T ss_dssp HHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHH
T ss_pred Ccccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHH
Confidence 8765433 23345566789999999999999999999888999999999999999999999999998889999999999
Q ss_pred HHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEc
Q 004301 267 EQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 267 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
+||+++|+||||||||....+++.+++..++++|.++||+||+||||+|+...++++.+||+|+|||++.||.|+..+.+
T Consensus 159 ~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~l 238 (649)
T 3i6s_A 159 DQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238 (649)
T ss_dssp HHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEE
T ss_pred HHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEe
Confidence 99999999999999999777778899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCcccc--CCcEEEEeCCCchhhhHHHHHHHcCceEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKV--AGKIVMCDRGVNARVQKGAVVKAAGGLGM 424 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~--~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~ 424 (762)
++++++.|.++|+.... ...+|+++.. ....|.+..+++.++ +||||+|.|+.+.+.+|..+++++|+.|+
T Consensus 239 gng~~~~g~sl~~~~~~-~~~~plv~~~------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~ 311 (649)
T 3i6s_A 239 GNGLKIRGWSLFPARAF-VRDSPVIYNK------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAI 311 (649)
T ss_dssp TTSCEEEEECCCSSCBC-EEEEEEECCT------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEE
T ss_pred CCCcEEeeeecccCccc-CcceeeEecc------cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEE
Confidence 99999999999987653 6789999975 356899888888877 99999999999999999999999999999
Q ss_pred EEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCc
Q 004301 425 VLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPD 504 (762)
Q Consensus 425 i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 504 (762)
|++|+. .....+.+.+|+++++..+++.|++|++++.+++++|.+..+..+..+.+.+++||||||+.+.+++||||
T Consensus 312 i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPD 388 (649)
T 3i6s_A 312 FISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPD 388 (649)
T ss_dssp EECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCC
T ss_pred EEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCe
Confidence 999986 44556788999999999999999999999999999999999999888999999999999999888999999
Q ss_pred EEecCCcEEecccCCCCCCCCCCCC-cccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcc
Q 004301 505 MIAPGVNILAGWSGAVGPTGLATDS-RRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQK 583 (762)
Q Consensus 505 I~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~ 583 (762)
|+|||++|+++|+....+.....+. +...|..+||||||||||||+||||||+||+|+|++||++||+||+++++.+.+
T Consensus 389 I~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~ 468 (649)
T 3i6s_A 389 ILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKP 468 (649)
T ss_dssp EEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSB
T ss_pred EEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCc
Confidence 9999999999999865544433332 346899999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCcCccccCCCCeeecCCcchhhhhccccCCCccccccccccccc--cCCCcCCCCCCccCCc
Q 004301 584 LQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFT--CDASKRYSLADFNYPS 661 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~d~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--c~~~~~~~~~~ln~ps 661 (762)
+.+...+.+++++.||+|+||+.+|++||||||++.+||++|||++||+.++|+.|++...+ |+. ...+|||||
T Consensus 469 i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNyPs 544 (649)
T 3i6s_A 469 IKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNYPS 544 (649)
T ss_dssp CEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCCSS
T ss_pred ccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCCCc
Confidence 98876678899999999999999999999999999999999999999999999999988777 974 567999999
Q ss_pred eeeec-cccccCCCcce--EEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCC
Q 004301 662 FAVNI-ETAQSSSGSSV--LKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSN 737 (762)
Q Consensus 662 ~~~~~-~~~~~~~~~~~--~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~ 737 (762)
|++.+ +. ..... ++|+|||||||+ .++|+++++. |+|++|+|+|.+|+|++.+|+++|+|||+......+
T Consensus 545 ~~~~~~~~----~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~--p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~ 618 (649)
T 3i6s_A 545 FIALYSIE----GNFTLLEQKFKRTVTNVGKGAATYKAKLKA--PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQ 618 (649)
T ss_dssp EEEEECCS----SCCCCEEEEEEEEEEECC--CEEEEEEEEC--CTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---
T ss_pred EEeecccC----CCCccceEEEEEEEEEeCCCCcEEEEEEec--CCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCC
Confidence 99987 32 20012 899999999999 9999999999 999999999999999889999999999998766667
Q ss_pred CeEEEEEEEEc--CceEEEeEEEEEeC
Q 004301 738 TNSFAHLEWSD--GKYIVGSPIAISWN 762 (762)
Q Consensus 738 ~~~~G~i~~~~--~~~~v~~P~~v~~~ 762 (762)
.|.||+|+|+| ++|.||+||+|++.
T Consensus 619 ~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 619 SRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred ceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 79999999998 99999999999873
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-113 Score=993.46 Aligned_cols=613 Identities=43% Similarity=0.744 Sum_probs=513.0
Q ss_pred CCCCCcccCCcCCCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecc
Q 004301 107 TTRSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFA 186 (762)
Q Consensus 107 ~~~s~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~ 186 (762)
++++|+|+||+ ..+|.+..+|+||+|||||||||++||+|+++++.+++.+|+|.|+.+.+|. ||+|++|+++|.
T Consensus 1 tt~s~~flGl~--~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCC--TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEEECC
T ss_pred CCCChhHcCCC--ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeeeecc
Confidence 57899999996 4689899999999999999999999999999999999999999999998874 999999999998
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHH
Q 004301 187 RGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAI 266 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai 266 (762)
.+.... ..+..+++|++||||||||||||+.+.+.+.+|++.|.++||||+|+|++||+|++.||..+++++||
T Consensus 76 ~~~~~~------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~ 149 (621)
T 3vta_A 76 IGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAY 149 (621)
T ss_dssp CSSSCC------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHH
T ss_pred cCCccC------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHH
Confidence 775432 23445789999999999999999998888888888899999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEccCCCC-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEE
Q 004301 267 EQAIDDNVNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVS 345 (762)
Q Consensus 267 ~~a~~~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~ 345 (762)
++|+++|+||||||||+.. .....+++++++++|.++||+||+||||+|+...++++.+||+++|++++.++.|...+.
T Consensus 150 ~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~ 229 (621)
T 3vta_A 150 DDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229 (621)
T ss_dssp HHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEE
T ss_pred HHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEE
Confidence 9999999999999999865 455678899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeEeeecCCCCCCceeeEEEccCCCC----CCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCc
Q 004301 346 LGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASN----ATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGG 421 (762)
Q Consensus 346 ~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~----~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga 421 (762)
++++..+.+.+++... ...+++++...... ......|.+..+++.+++|||++|.++. ..+..+....|+
T Consensus 230 ~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~---~~~~~~~~~~Ga 303 (621)
T 3vta_A 230 IGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF---GPHEFFKSLDGA 303 (621)
T ss_dssp ETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC---CHHHHHHHHTTC
T ss_pred eccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecCC---ChhHHhhhhcce
Confidence 9999999888876533 45677777665432 2235678899999999999999998763 356677788999
Q ss_pred eEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCC
Q 004301 422 LGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELL 501 (762)
Q Consensus 422 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~l 501 (762)
.+++++++... ..+.+.+|...++..++..++.|+..+..+.+.+....+ ......+.++.||||||+...++++
T Consensus 304 ~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~-~~~~~~~~va~FSSrGP~~~~~~il 378 (621)
T 3vta_A 304 AGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTT-ILNASAPVVVSFSSRGPNRATKDVI 378 (621)
T ss_dssp SEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEE-EECTTCCCBCTTSCCCSCTTCTTSC
T ss_pred eEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceE-eccCCCCceeeecCCCCCCCCCCee
Confidence 99999987543 235678999999999999999999998888887754443 3446788999999999998778999
Q ss_pred CCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCC
Q 004301 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNG 581 (762)
Q Consensus 502 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g 581 (762)
||||+|||++|+|+|+....... ......|..+||||||||||||+||||||+||+|+|++||++||+||++++..
T Consensus 379 KPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~- 454 (621)
T 3vta_A 379 KPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR- 454 (621)
T ss_dssp SCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTT-
T ss_pred ccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccccc-
Confidence 99999999999999987543222 22345899999999999999999999999999999999999999999988654
Q ss_pred cccccccCCCCCCCCCCCCCCcCccccCCCCeeecCCcchhhhhccccCCCccccccccccccccCCCcCCCCCCccCCc
Q 004301 582 QKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPS 661 (762)
Q Consensus 582 ~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~d~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~ps 661 (762)
..+..+++||+|+||+.+|++||||||+..+||+.|||++||+..+++.+++....|.........+|||||
T Consensus 455 --------~~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS 526 (621)
T 3vta_A 455 --------FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPS 526 (621)
T ss_dssp --------TCTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSS
T ss_pred --------CCCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCccccccccc
Confidence 345677899999999999999999999999999999999999999999999988899876656778999999
Q ss_pred eeeeccccccCCCcceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeE
Q 004301 662 FAVNIETAQSSSGSSVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNS 740 (762)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 740 (762)
|++.... ....+++|+||||||+. ..+|+++++. |+|++|+|+|.+|+|++.+|+++|+|||+.. .++.++
T Consensus 527 ~~v~~~~----~~~~~~t~~rtvtnvg~~~~ty~~~v~~--p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~ 598 (621)
T 3vta_A 527 FGLSVSP----SQTFNQYFNRTLTSVAPQASTYRAMISA--PQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVV 598 (621)
T ss_dssp EEEECCS----SCCEEEEEEEEEEECSSSCEEEEEEEEC--CSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEE
T ss_pred EEEEccC----CCceEEEEEEEEEccCCCCeEEEEEEEC--CCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceE
Confidence 9987542 22368999999999999 9999999999 9999999999999999889999999999764 678899
Q ss_pred EEEEEEEcCceEEEeEEEEEe
Q 004301 741 FAHLEWSDGKYIVGSPIAISW 761 (762)
Q Consensus 741 ~G~i~~~~~~~~v~~P~~v~~ 761 (762)
||+|+|+|++|.||+||+|+.
T Consensus 599 ~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 599 SASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEEEEEECSSCCCEEEEEEEC
T ss_pred EEEEEEEcCCEEEEeCEEEEE
Confidence 999999999999999999984
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-83 Score=775.44 Aligned_cols=536 Identities=24% Similarity=0.317 Sum_probs=426.9
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCC----------CCCCCCceeeeeeeccccc
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNF----------NASNCNRKLIGARYFARGY 189 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f----------~~~~~n~kiig~~~~~~~~ 189 (762)
..+|..+++|+||+|||||||||++||+|.+. ..|++.|..+..| ...+||+|++++++|..+.
T Consensus 7 ~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~ 80 (926)
T 1xf1_A 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG 80 (926)
T ss_dssp HHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS
T ss_pred HHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC
Confidence 45899999999999999999999999999853 5677776543222 2347999999999987542
Q ss_pred cccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHH
Q 004301 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIE 267 (762)
Q Consensus 190 ~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~ 267 (762)
...|..||||||||||||+...+.+. .+.+.||||+|+|++||+|++.+ +..+++++||+
T Consensus 81 --------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~ 142 (926)
T 1xf1_A 81 --------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIR 142 (926)
T ss_dssp --------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHH
T ss_pred --------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHH
Confidence 12288999999999999987554322 24468999999999999998876 55678999999
Q ss_pred HHHhCCCcEEEEccCCCC--CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC-------------C--CccCCCCceEE
Q 004301 268 QAIDDNVNVLSMSLGGGT--SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-------------Y--SLSNVAPWITT 330 (762)
Q Consensus 268 ~a~~~g~dVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~--~~~~~~p~vit 330 (762)
||+++|+||||||||+.. ...+.+.+..++++|.++||+||+||||+|+.. . ..++.+||+|+
T Consensus 143 ~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vit 222 (926)
T 1xf1_A 143 DAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLT 222 (926)
T ss_dssp HHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEE
T ss_pred HHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEE
Confidence 999999999999999864 344567788899999999999999999999632 1 23345899999
Q ss_pred ecCCCCCCccceeEEc-CCCcEEEeEeeecCCCC-CCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCch
Q 004301 331 VGAGTLDRDFPAFVSL-GNGQNYSGVSLYKGDGL-PGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNA 408 (762)
Q Consensus 331 VgA~~~~~~~~~~~~~-~~g~~~~g~s~~~~~~~-~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~ 408 (762)
|||++.++.+...+.+ +++....+.+++...++ ....+|+++... .|.+..+ .+++||||+|.|+.|.
T Consensus 223 VgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~--------g~~~~~~--~~v~Gkivl~~rg~~~ 292 (926)
T 1xf1_A 223 VASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR--------GTKEDDF--KDVKGKIALIERGDID 292 (926)
T ss_dssp EEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT--------SCSTTTT--TTCTTSEEEEECCSSC
T ss_pred EeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC--------CCCccch--hhcCCeEEEEECCCCC
Confidence 9999999999888887 66655556665543333 356799999754 3766555 6899999999999999
Q ss_pred hhhHHHHHHHcCceEEEEeecCCCCcc-ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEeccee--ecCcCCCee
Q 004301 409 RVQKGAVVKAAGGLGMVLANTESNGEE-LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTK--VGVEPSPVV 485 (762)
Q Consensus 409 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~ 485 (762)
+.+|..+++++||.|+|++|+...... ......++|+++++..+++.|++ .+..++.+..+. ......+.+
T Consensus 293 ~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~ 366 (926)
T 1xf1_A 293 FKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKL 366 (926)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBC
T ss_pred HHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCccee
Confidence 999999999999999999998654322 23446789999999999998874 345566666553 455667899
Q ss_pred ecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHH----hhCCCC
Q 004301 486 AAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLK----AAHPEW 561 (762)
Q Consensus 486 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~p~~ 561 (762)
+.||||||+.+ +++||||+|||++|+++++++ .|..+||||||||||||+||||+ +.||+|
T Consensus 367 a~FSSrGp~~~--~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~ 431 (926)
T 1xf1_A 367 SRFSSWGLTAD--GNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDM 431 (926)
T ss_dssp CTTSCCCBCTT--SCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ccccCCCCCCC--CccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999965 899999999999999999864 79999999999999999999995 569999
Q ss_pred CHHH----HHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCCCeeecCCcchhhhhccccCCCccccc
Q 004301 562 SPAA----IRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQIN 637 (762)
Q Consensus 562 sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~d~~~~~y~~~~~~~~~~~~~~~ 637 (762)
+|+| ||++||+||+++...+. ...+++++||+|+||+.+|++|.+ |||..++...
T Consensus 432 sp~~~~~~Iks~L~~TA~~~~~~~~-------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~--- 490 (926)
T 1xf1_A 432 TPSERLDLAKKVLMSSATALYDEDE-------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS--- 490 (926)
T ss_dssp HHHHHHHHHHHHHHHHSBCCEEGGG-------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS---
T ss_pred CHHHHHHHHHHHHHhcCCCcccCCC-------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc---
Confidence 9997 99999999998754321 335677899999999999999854 6787654321
Q ss_pred cccccccccCCCcCCCCCCccCCceeeeccccccCCCcceEEEEEEEEecCC-C--ceEEEEEeecCCCCeEEEEEcCeE
Q 004301 638 SLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGP-P--GTYKVFITSSTGPGVKISVEPATL 714 (762)
Q Consensus 638 ~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~~~~~rtv~n~~~-~--~~y~~~~~~~~~~~~~v~v~p~~~ 714 (762)
+|.+... . .+.+++|||||+|+ . .+|++++....|++..++|+|..|
T Consensus 491 -----------------------~i~l~~~-----~--~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l 540 (926)
T 1xf1_A 491 -----------------------KVHLNNV-----S--DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVL 540 (926)
T ss_dssp -----------------------CEEEEEE-----C--SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred -----------------------eeecccc-----C--ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEecccee
Confidence 2333322 1 47899999999997 4 567877765446788999988766
Q ss_pred EEe-------ecCeeeEEEEEEEEec--------CCCCCeEEEEEEEE--cCceE-EEeEEEEEe
Q 004301 715 SFT-------QANEKKSYTVTFTVSS--------MPSNTNSFAHLEWS--DGKYI-VGSPIAISW 761 (762)
Q Consensus 715 ~~~-------~~~~~~~~~vt~~~~~--------~~~~~~~~G~i~~~--~~~~~-v~~P~~v~~ 761 (762)
.|. ++|++++|+|||++.. ++++.++||+|+|+ ++.|. ||+||++..
T Consensus 541 ~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 541 YETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred EeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 554 4599999999999851 35667999999999 56664 999999863
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=551.59 Aligned_cols=367 Identities=30% Similarity=0.461 Sum_probs=290.9
Q ss_pred CCCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHH-----------hcCCCeE
Q 004301 27 DQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESL-----------EQRPGIL 95 (762)
Q Consensus 27 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L-----------~~~p~V~ 95 (762)
.+...|||+|++.... +...+.+++. +.+++++|. .++||+++++++++++| +++|+|+
T Consensus 33 ~~~~~~iV~~~~~~~~-------~~~~~~~~~~--g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~ 102 (539)
T 3afg_A 33 DQEVSTIIMFDNQADK-------EKAVEILDFL--GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQ 102 (539)
T ss_dssp TCEEEEEEEESSHHHH-------HHHHHHHHHH--TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEE
T ss_pred cCceEEEEEECCCCCH-------HHHHHHHHhc--CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCee
Confidence 3456799999975421 1122334444 578999997 79999999999999999 8899999
Q ss_pred EEEeCceeccCCCCC--CcccCCcCCCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 004301 96 SVLPELKYELHTTRS--PEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNAS 173 (762)
Q Consensus 96 ~v~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~ 173 (762)
+|++++.+++..... ...+.......+|..+++|+||+|||||||||++||+|.+
T Consensus 103 ~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~----------------------- 159 (539)
T 3afg_A 103 FIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG----------------------- 159 (539)
T ss_dssp EEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT-----------------------
T ss_pred EEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC-----------------------
Confidence 999999988753221 1112222346789999999999999999999999999964
Q ss_pred CCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEe
Q 004301 174 NCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCW 253 (762)
Q Consensus 174 ~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 253 (762)
++++.++|..+. ..+.|++||||||||||||+.... .|.+.||||+|+|+++|+++
T Consensus 160 ----~i~~~~d~~~~~-------------~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~ 215 (539)
T 3afg_A 160 ----KVIGWVDFVNGK-------------TTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLN 215 (539)
T ss_dssp ----TEEEEEETTTCC-------------SSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSC
T ss_pred ----CEeeeEECCCCC-------------CCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeec
Confidence 355666665431 246788999999999999975321 23358999999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHhC----CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--CccCCCC
Q 004301 254 VGG-CFSSDILAAIEQAIDD----NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--SLSNVAP 326 (762)
Q Consensus 254 ~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p 326 (762)
+.| ++.+++++||+||+++ |++|||||||........+.+..++.++.++|++||+||||+|+... ..++..+
T Consensus 216 ~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~ 295 (539)
T 3afg_A 216 GQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAAS 295 (539)
T ss_dssp TTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCS
T ss_pred CCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCC
Confidence 877 7889999999999986 89999999998765455678888999999999999999999998644 4567889
Q ss_pred ceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCC
Q 004301 327 WITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGV 406 (762)
Q Consensus 327 ~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~ 406 (762)
++|+|||++.
T Consensus 296 ~vitVgA~~~---------------------------------------------------------------------- 305 (539)
T 3afg_A 296 KVITVGAVDK---------------------------------------------------------------------- 305 (539)
T ss_dssp SSEEEEEECT----------------------------------------------------------------------
T ss_pred ceEEEeeecC----------------------------------------------------------------------
Confidence 9999998421
Q ss_pred chhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeee
Q 004301 407 NARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVA 486 (762)
Q Consensus 407 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 486 (762)
.+.++
T Consensus 306 ---------------------------------------------------------------------------~~~~a 310 (539)
T 3afg_A 306 ---------------------------------------------------------------------------YDVIT 310 (539)
T ss_dssp ---------------------------------------------------------------------------TSCBC
T ss_pred ---------------------------------------------------------------------------Ccccc
Confidence 12678
Q ss_pred cccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHH
Q 004301 487 AFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAI 566 (762)
Q Consensus 487 ~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~i 566 (762)
+||||||+.+ +++||||+|||++|+++++...... +.....|..++|||||||||||++|||+|++|+|+|++|
T Consensus 311 ~fSs~Gp~~~--~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~v 384 (539)
T 3afg_A 311 DFSSRGPTAD--NRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKV 384 (539)
T ss_dssp SSSCCCCCTT--CBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred cccCCCCCCC--CCCcccEecCcCCEEeeccCCCCCC----CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 9999999986 8999999999999999986532111 111136999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCCC
Q 004301 567 RSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPG 612 (762)
Q Consensus 567 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~ 612 (762)
|++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 385 k~~L~~tA~~~~~~~-----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 385 KTALIETADIVKPDE-----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHSBCSSGGG-----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHhhCccCCCCC-----------CCccCccCCccCHHHHhhhc
Confidence 999999999875221 24568999999999999854
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=518.13 Aligned_cols=342 Identities=28% Similarity=0.383 Sum_probs=277.4
Q ss_pred CCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceeccCCC
Q 004301 29 RATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTT 108 (762)
Q Consensus 29 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~ 108 (762)
+.+|||+|+++... ++++++. +.+++++|. .+++|+++++++++++|+++|+|++|++++.+++...
T Consensus 2 ~~~~iV~~~~~~~~----------~~~~~~~--g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~ 68 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN----------PHEVLGI--GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGK 68 (395)
T ss_dssp EEEEEEEECTTTCC----------HHHHHHT--TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCE
T ss_pred cEEEEEEECCCccH----------HHHHHHc--CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCC
Confidence 46899999987432 2234443 678999998 5999999999999999999999999999999876432
Q ss_pred CC-----------CcccCCcC--CCCCCcCCCCCCC--cEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 004301 109 RS-----------PEFLGLDK--SANLFPTSGSASE--VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNAS 173 (762)
Q Consensus 109 ~s-----------~~~~g~~~--~~~~~~~~~~G~G--v~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~ 173 (762)
.. ...|++.. ...+|..+ +|+| |+|||||||||++||+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~---------------------- 125 (395)
T 2z2z_A 69 PSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------- 125 (395)
T ss_dssp ECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG----------------------
T ss_pred CCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc----------------------
Confidence 11 12455443 35689988 9999 99999999999999999752
Q ss_pred CCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEe
Q 004301 174 NCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCW 253 (762)
Q Consensus 174 ~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 253 (762)
++..++|..+... ....++.|.+||||||||||+|.. ++ .| +.||||+|+|+.+|+++
T Consensus 126 -----~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~kv~~ 183 (395)
T 2z2z_A 126 -----IAWCVSTLRGKVS--------TKLRDCADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLD 183 (395)
T ss_dssp -----EEEEEECGGGCCB--------CCHHHHBCSSSHHHHHHHHHHCCC-SS---SS-----CCCSSTTCEEEEEECSC
T ss_pred -----cccCccccCCccc--------CCCCCCCCCCCCHHHHHHHHHeec-CC---Cc-----eEEECCCCEEEEEEEec
Confidence 3334444433100 000124678999999999999973 21 12 37999999999999998
Q ss_pred cCC-CCHHHHHHHHHHHHhC--------------------CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecC
Q 004301 254 VGG-CFSSDILAAIEQAIDD--------------------NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAG 312 (762)
Q Consensus 254 ~~g-~~~~~i~~ai~~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 312 (762)
+.| ++.+++++||+||+++ +++|||||||.... ...+..++.++.++|++||+|||
T Consensus 184 ~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAG 260 (395)
T 2z2z_A 184 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASG 260 (395)
T ss_dssp TTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEECC
Confidence 877 7888999999999988 99999999998542 35667777789999999999999
Q ss_pred CCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCc
Q 004301 313 NAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIP 392 (762)
Q Consensus 313 N~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~ 392 (762)
|+|.....+++..|++|+|||++.
T Consensus 261 N~g~~~~~~Pa~~~~vi~Vga~~~-------------------------------------------------------- 284 (395)
T 2z2z_A 261 NEGAPSPSYPAAYPEVIAVGAIDS-------------------------------------------------------- 284 (395)
T ss_dssp SSCCSSCCBTTTSTTEEEEEEECT--------------------------------------------------------
T ss_pred CCCCCCCCCccCCCCEEEEEEecC--------------------------------------------------------
Confidence 999887788899999999998431
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEe
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILF 472 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~ 472 (762)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHH
Q 004301 473 EGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAA 552 (762)
Q Consensus 473 ~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 552 (762)
.+.+++||++|| +|+|||++|+++++.+ .|..++|||||||||||++|
T Consensus 285 ---------~~~~a~fS~~G~----------~v~APG~~i~s~~~~~-------------~y~~~sGTS~AaP~VaG~aA 332 (395)
T 2z2z_A 285 ---------NDNIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVA 332 (395)
T ss_dssp ---------TSCBCTTSCSSC----------SEEEECSSEEEEETTT-------------EEEEEESHHHHHHHHHHHHH
T ss_pred ---------CCCCCcccCCCC----------CEEeCCCCeeeecCCC-------------ceEecCCHHHHHHHHHHHHH
Confidence 126789999998 6799999999999864 89999999999999999999
Q ss_pred HHHhhCC-------------CCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCC
Q 004301 553 LLKAAHP-------------EWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNP 611 (762)
Q Consensus 553 Ll~~~~p-------------~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 611 (762)
||+|++| .|++.+||++|++||+++.. +..+..||||+||+.+|++.
T Consensus 333 ll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 333 LIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHHH
T ss_pred HHHHhCccccccccccccccCCCHHHHHHHHHhhccccCC------------CCCCCCccCceeCHHHHHHH
Confidence 9999999 99999999999999998742 23456899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-57 Score=514.93 Aligned_cols=356 Identities=19% Similarity=0.233 Sum_probs=277.4
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhc-CCCeEEEEeCceeccC
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQ-RPGILSVLPELKYELH 106 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~-~p~V~~v~~~~~~~~~ 106 (762)
+++.|||++++.. .+.+.+++. +.+++++|. .+++|+++++++++++|++ +|+|++|++++.+++.
T Consensus 43 ~~~~yiv~~~~~~----------~~~~~~~~~--g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~ 109 (471)
T 3t41_A 43 EELYYSVEYKNTA----------TFNKLVKKK--SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCIT 109 (471)
T ss_dssp CCEEEEEEESCHH----------HHHHHHHHH--TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBC
T ss_pred CceEEEEEcCCHH----------HHHHHHHhC--CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccc
Confidence 3568999777533 133445544 678889986 5999999999999999999 9999999999988775
Q ss_pred CCCC----------CcccCCcCC---CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 004301 107 TTRS----------PEFLGLDKS---ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNAS 173 (762)
Q Consensus 107 ~~~s----------~~~~g~~~~---~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~ 173 (762)
.... ...|++..+ ..+|..+.+|+||+|||||||||++||+|.++- |.+
T Consensus 110 ~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~----------- 171 (471)
T 3t41_A 110 SEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STD----------- 171 (471)
T ss_dssp CCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTT-----------
T ss_pred cccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccC-----------
Confidence 4322 123444433 358999999999999999999999999998641 111
Q ss_pred CCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEe
Q 004301 174 NCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCW 253 (762)
Q Consensus 174 ~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~ 253 (762)
.+.|..+..+.....+...+...+.|..||||||||||||+.. +.||||+|+|+++|+++
T Consensus 172 --------~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~ 231 (471)
T 3t41_A 172 --------SKNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFG 231 (471)
T ss_dssp --------CEECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCS
T ss_pred --------CcccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEEEecc
Confidence 1112111111111111112233578899999999999998631 48999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC-------------CCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC
Q 004301 254 VGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTS-------------DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS 320 (762)
Q Consensus 254 ~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~-------------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~ 320 (762)
+.++..+++++||+||+++|++|||||||.... ....+.+..++..+.++|++||+||||+|.....
T Consensus 232 ~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~ 311 (471)
T 3t41_A 232 SKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVND 311 (471)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTC
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCc
Confidence 866889999999999999999999999997320 0223567788889999999999999999986542
Q ss_pred ------------------ccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCC
Q 004301 321 ------------------LSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNG 382 (762)
Q Consensus 321 ------------------~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~ 382 (762)
.++.+|++|+|||++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~---------------------------------------------- 345 (471)
T 3t41_A 312 KQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ---------------------------------------------- 345 (471)
T ss_dssp HHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT----------------------------------------------
T ss_pred ccccccccccccCCceeeccccCCCeEEEEeeCC----------------------------------------------
Confidence 5677889999988432
Q ss_pred CcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhc
Q 004301 383 NLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVS 462 (762)
Q Consensus 383 ~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 462 (762)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCc----------------------EEecccCCC
Q 004301 463 DPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVN----------------------ILAGWSGAV 520 (762)
Q Consensus 463 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~----------------------I~sa~~~~~ 520 (762)
.+.+++||++||+. |||+|||++ |+++++.+
T Consensus 346 -------------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~- 398 (471)
T 3t41_A 346 -------------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG- 398 (471)
T ss_dssp -------------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS-
T ss_pred -------------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCCC-
Confidence 12678999999974 499999987 88888764
Q ss_pred CCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCC
Q 004301 521 GPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHP-EWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHG 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 599 (762)
.|..++|||||||||||++|||+|++| .++|++||++|++||.+... .++..||
T Consensus 399 ------------~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------~~~~~~G 453 (471)
T 3t41_A 399 ------------RYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------KPFSRYG 453 (471)
T ss_dssp ------------SEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------CCHHHHT
T ss_pred ------------CEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------CCcCccc
Confidence 799999999999999999999999999 89999999999999997632 3445899
Q ss_pred CCCcCccccCCCC
Q 004301 600 AGHVNPVSALNPG 612 (762)
Q Consensus 600 ~G~vd~~~A~~~~ 612 (762)
||++|+.+|++..
T Consensus 454 ~G~vd~~~Al~~a 466 (471)
T 3t41_A 454 HGELDVYKALNVA 466 (471)
T ss_dssp TCBBCHHHHTTTT
T ss_pred cChhCHHHHHHHH
Confidence 9999999999854
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=537.28 Aligned_cols=333 Identities=21% Similarity=0.265 Sum_probs=63.1
Q ss_pred CeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceeccCCCC
Q 004301 30 ATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELHTTR 109 (762)
Q Consensus 30 ~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~ 109 (762)
++|||+||++......+.+.+++.+.+.+.....++++.|.+.|+||+++++++++++|+++|+|++||+++.+...
T Consensus 76 g~YIV~lk~~~~~~~~~~~~~~l~a~~~~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~--- 152 (692)
T 2p4e_P 76 GTYVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ--- 152 (692)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC---
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHHhhcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC---
Confidence 49999999988765555555666555544433568999999999999999999999999999999999999988652
Q ss_pred CCcccCCcCCC------CCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeee
Q 004301 110 SPEFLGLDKSA------NLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGAR 183 (762)
Q Consensus 110 s~~~~g~~~~~------~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~ 183 (762)
...|++.++. ..|..+.+|+||+|||||||||++||+|.++. .|. +|
T Consensus 153 -~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~------~~~-------~~------------- 205 (692)
T 2p4e_P 153 -SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV------MVT-------DF------------- 205 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCce------Eec-------cc-------------
Confidence 1235665432 36888899999999999999999999998641 010 00
Q ss_pred eccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHH
Q 004301 184 YFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDI 262 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i 262 (762)
++..+. ++ .....++.|.+||||||||||+|+. .||||+|+|+++||+++.| ++.+++
T Consensus 206 ~~~~d~---dg----~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~i 264 (692)
T 2p4e_P 206 ENVPEE---DG----TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGT 264 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCC---CC----CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHH
Confidence 000000 00 0001246789999999999999873 6999999999999998877 788899
Q ss_pred HHHHHHHHhC------CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCC
Q 004301 263 LAAIEQAIDD------NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGT 335 (762)
Q Consensus 263 ~~ai~~a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~ 335 (762)
++||+|++++ |++|||||||+..+ ..+..++.++.++|++||+||||+|.+.. ..++..|++|+|||++
T Consensus 265 i~aI~~a~~~~~~~~~g~~VINmSlGg~~s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d 340 (692)
T 2p4e_P 265 LIGLEFIRKSQLVQPVGPLVVLLPLAGGYS----RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATN 340 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhcccCCceEEEecCCCCCc----HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEc
Confidence 9999999986 89999999997543 34455556889999999999999998764 3478889999999964
Q ss_pred CCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHH
Q 004301 336 LDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAV 415 (762)
Q Consensus 336 ~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~ 415 (762)
.+...
T Consensus 341 ~~~~~--------------------------------------------------------------------------- 345 (692)
T 2p4e_P 341 AQDQP--------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 32210
Q ss_pred HHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCC
Q 004301 416 VKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNS 495 (762)
Q Consensus 416 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 495 (762)
...-+.||+|||
T Consensus 346 ------------------------------------------------------------------a~~ss~fSn~G~-- 357 (692)
T 2p4e_P 346 ------------------------------------------------------------------VTLGTLGTNFGR-- 357 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------cccccccCCCCC--
Confidence 000123899998
Q ss_pred CCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004301 496 ITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAY 575 (762)
Q Consensus 496 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 575 (762)
||||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|++||++|++||.
T Consensus 358 ------~vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~ 420 (692)
T 2p4e_P 358 ------CVDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSA 420 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------ceeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcc
Confidence 4599999999999988642 27899999999999999999999999999999999999999998
Q ss_pred cc
Q 004301 576 VS 577 (762)
Q Consensus 576 ~~ 577 (762)
+.
T Consensus 421 ~~ 422 (692)
T 2p4e_P 421 KD 422 (692)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-55 Score=492.17 Aligned_cols=384 Identities=26% Similarity=0.361 Sum_probs=277.1
Q ss_pred cCCcC--CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccc
Q 004301 114 LGLDK--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191 (762)
Q Consensus 114 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~ 191 (762)
|++.+ +..+|..+ |+||+|||||||||++||+|.++ ++..+++...
T Consensus 6 W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~---------------------------~~~~~~~~~~--- 53 (441)
T 1y9z_A 6 WGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT--- 53 (441)
T ss_dssp HHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS---
T ss_pred CChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC---------------------------cccCcccCCC---
Confidence 55444 35688764 77999999999999999999753 1111111110
Q ss_pred cCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCc--eEEEEEEEecCC-CCHHHHHHHHHH
Q 004301 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRA--RVAAYKVCWVGG-CFSSDILAAIEQ 268 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~ 268 (762)
.+...+.|..||||||||||+|..+. .| +.||||+| +|+.+|++++.| ++.+++++||+|
T Consensus 54 --------~~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~ 116 (441)
T 1y9z_A 54 --------GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDT 116 (441)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 01124678899999999999997522 12 48999995 999999999877 788899999999
Q ss_pred HHhC-CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcC
Q 004301 269 AIDD-NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLG 347 (762)
Q Consensus 269 a~~~-g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 347 (762)
|+++ |++|||||||.... ...+..++.+|.++|++||+||||+|.....+++..|++|+|||++.+.....+...+
T Consensus 117 a~~~~g~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g 193 (441)
T 1y9z_A 117 CVNSGGANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYT 193 (441)
T ss_dssp HHHTTCCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCC
T ss_pred HHHhcCCcEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCC
Confidence 9999 99999999998542 2456667778999999999999999998888899999999999988765432221111
Q ss_pred -------------------CCc----EEEeEeeecCCCCCCc-eee--EEEccCCC---CCCCCCcccCC--CCCccccC
Q 004301 348 -------------------NGQ----NYSGVSLYKGDGLPGK-LLP--FVYAGNAS---NATNGNLCMMD--TLIPEKVA 396 (762)
Q Consensus 348 -------------------~g~----~~~g~s~~~~~~~~~~-~~p--~v~~~~~~---~~~~~~~c~~~--~~~~~~~~ 396 (762)
++. .+.+.+++....++.. .++ +.+..... .......|... .+++.+++
T Consensus 194 ~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~ 273 (441)
T 1y9z_A 194 DQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMA 273 (441)
T ss_dssp TTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCT
T ss_pred CceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCcc
Confidence 111 1222333221110000 000 11111000 01122457543 56778999
Q ss_pred CcEEEEeCCCc-----hhhhHHHHHHHcCceEEEEeecCCC-Cc-----cccccCcccceEEEchhhHHHHHHHHhcCCC
Q 004301 397 GKIVMCDRGVN-----ARVQKGAVVKAAGGLGMVLANTESN-GE-----ELVADAHLLPATAVGQKFGDAIKSYLVSDPK 465 (762)
Q Consensus 397 g~iv~~~~g~~-----~~~~~~~~~~~~Ga~g~i~~n~~~~-~~-----~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 465 (762)
|||++|+|+.+ .+.+|..+++++|+.|+|++|+... +. ........+|.+.++..+|+.|+.++.+.
T Consensus 274 gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~-- 351 (441)
T 1y9z_A 274 NKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS-- 351 (441)
T ss_dssp TEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE--
T ss_pred ccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC--
Confidence 99999999876 7789999999999999999987542 11 11233567999999999999999876321
Q ss_pred cEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhh
Q 004301 466 PTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCP 545 (762)
Q Consensus 466 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 545 (762)
+ .+ ++... ..|..++|||||||
T Consensus 352 --~-----------------------------------t~--------~~~~~-------------~~y~~~sGTSmAaP 373 (441)
T 1y9z_A 352 --T-----------------------------------TV--------SNQGN-------------QDYEYYNGTSMATP 373 (441)
T ss_dssp --E-----------------------------------EE--------EEEEE-------------ESEEEECSHHHHHH
T ss_pred --c-----------------------------------cc--------ccccC-------------CCceeecccccCCc
Confidence 1 01 11111 37999999999999
Q ss_pred hHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCCCeeecCCcchhhhh
Q 004301 546 HVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGF 625 (762)
Q Consensus 546 ~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~d~~~~~y~~~ 625 (762)
||||++|||+|+||+|+|++||++||+||++++..+ .+..||+|+||+.+|++ |+.|
T Consensus 374 ~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g------------~~~~~G~G~vn~~~A~~-----------~~~~ 430 (441)
T 1y9z_A 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAG------------RDNQTGYGMINAVAAKA-----------YLDE 430 (441)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS------------CBTTTBTCBCCHHHHHH-----------HHHH
T ss_pred ccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC------------CcccccccccCHHHHHH-----------HHHh
Confidence 999999999999999999999999999999885432 34589999999999974 9999
Q ss_pred ccccCCC
Q 004301 626 LCALNYT 632 (762)
Q Consensus 626 ~~~~~~~ 632 (762)
||+.+++
T Consensus 431 lc~~~~~ 437 (441)
T 1y9z_A 431 SCTGPTD 437 (441)
T ss_dssp CTTCC--
T ss_pred hhcCCCC
Confidence 9998754
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=505.07 Aligned_cols=374 Identities=26% Similarity=0.293 Sum_probs=275.1
Q ss_pred CCCCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCH----HHHHHHhc--CCCeEEEEe
Q 004301 26 PDQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTR----EEAESLEQ--RPGILSVLP 99 (762)
Q Consensus 26 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~----~~~~~L~~--~p~V~~v~~ 99 (762)
...+++|||+|++... .+++++.. +.++.+++. .+++++++++. +.+++|++ +|+|++|||
T Consensus 28 ~~~~~~~IV~~k~~~~----------~~~~~~~~--g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vep 94 (671)
T 1r6v_A 28 EYTEGKILVGYNDRSE----------VDKIVKAV--NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEP 94 (671)
T ss_dssp SBCTTEEEEEESSHHH----------HHHHHHHH--TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEEC
T ss_pred ccCCccEEEEECCCcC----------HHHHHHhc--CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEec
Confidence 3468999999997431 12233333 467788886 78999999864 34566764 799999999
Q ss_pred CceeccCCC---C------------------------CCcccCCcCC--CCC-CcCCCCCCCcEEEEEcccCCCCCCCCC
Q 004301 100 ELKYELHTT---R------------------------SPEFLGLDKS--ANL-FPTSGSASEVIVGVLDTGVWPESKSFD 149 (762)
Q Consensus 100 ~~~~~~~~~---~------------------------s~~~~g~~~~--~~~-~~~~~~G~Gv~VgVIDtGid~~Hp~f~ 149 (762)
+..+++... . ....|++..+ ..+ |.. .+|+||+|||||||||++||+|.
T Consensus 95 d~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~ 173 (671)
T 1r6v_A 95 SYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLE 173 (671)
T ss_dssp CBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGT
T ss_pred CeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCcccc
Confidence 977654310 0 0123444332 345 887 89999999999999999999997
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCcc
Q 004301 150 DTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASL 229 (762)
Q Consensus 150 ~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~ 229 (762)
++- + .+ +++..+... ....+..|.+||||||||||||..+ +
T Consensus 174 ~~~-------~-------------------~g-~~~~~~~~~--------p~~~d~~d~~gHGThVAGiIAa~~n-g--- 214 (671)
T 1r6v_A 174 GQV-------I-------------------AG-YRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAKKD-G--- 214 (671)
T ss_dssp TTB-------C-------------------CE-EEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCCCS-S---
T ss_pred ccE-------E-------------------ec-ccccCCCcC--------CCCCCCccCCCcchhhhhhhhccCC-C---
Confidence 531 1 11 111111000 0011245678999999999999731 1
Q ss_pred ccccCcceeeeccCceEEEEEEEec------CC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHh
Q 004301 230 FGYAAGTARGMATRARVAAYKVCWV------GG-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAME 302 (762)
Q Consensus 230 ~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~ 302 (762)
.| +.||||+|+|+++|++++ .+ .....+++||+||+++|++|||||||+.. +...+..++.+|.+
T Consensus 215 ~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~ 286 (671)
T 1r6v_A 215 KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAME 286 (671)
T ss_dssp SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHH
T ss_pred Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHh
Confidence 12 389999999999999986 23 34567899999999999999999999853 34567778889999
Q ss_pred cCCEEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCC
Q 004301 303 KGILVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATN 381 (762)
Q Consensus 303 ~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~ 381 (762)
+|+++|+||||+|.+. ..+++..|++|+|||++.+..
T Consensus 287 ~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------------------ 324 (671)
T 1r6v_A 287 HGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------ 324 (671)
T ss_dssp TTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT------------------------------------------
T ss_pred CCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC------------------------------------------
Confidence 9999999999999875 567788899999998532110
Q ss_pred CCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHh
Q 004301 382 GNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLV 461 (762)
Q Consensus 382 ~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 461 (762)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCC-----CCCCCCcccceee
Q 004301 462 SDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPT-----GLATDSRRVSFNI 536 (762)
Q Consensus 462 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~ 536 (762)
...+++||++||.. ||+|||++|+++++...... ..........|..
T Consensus 325 --------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~ 376 (671)
T 1r6v_A 325 --------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376 (671)
T ss_dssp --------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEE
T ss_pred --------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEE
Confidence 01478999999975 99999999999987642110 0001112347999
Q ss_pred eccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCCCeeec
Q 004301 537 ISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYD 616 (762)
Q Consensus 537 ~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~d 616 (762)
++|||||||||||++|||+|++|+|+|.+||++|++||+++.. +..+..||||++|+.+|++..|..+
T Consensus 377 ~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~------------~g~d~~~G~G~vna~~Al~~~l~~~ 444 (671)
T 1r6v_A 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG------------NGWDHDTGYGLVKLDAALQGPLPTQ 444 (671)
T ss_dssp EESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS------------SSCBTTTBTCBCCHHHHHHCCCCSS
T ss_pred ecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCC------------CCCCCCcccceeCHHHHhhhhcCCC
Confidence 9999999999999999999999999999999999999998743 2334589999999999999888776
Q ss_pred CCcchh
Q 004301 617 LTVDDY 622 (762)
Q Consensus 617 ~~~~~y 622 (762)
....+|
T Consensus 445 ~~~~~~ 450 (671)
T 1r6v_A 445 GGVEEF 450 (671)
T ss_dssp SEEEEE
T ss_pred CCccce
Confidence 655444
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-52 Score=435.07 Aligned_cols=265 Identities=31% Similarity=0.368 Sum_probs=214.5
Q ss_pred ccCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.|++..+ ..+|..+..|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 12 ~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~~- 63 (280)
T 1dbi_A 12 QYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDND- 63 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTTB-
T ss_pred CCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCCC-
Confidence 4666554 46899988888999999999999999999742 34444454321
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
.++.|..||||||||||+|...+..+ +.||||+|+|+.+|++++.+ ++.+++++||+||
T Consensus 64 ------------~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 123 (280)
T 1dbi_A 64 ------------YDPMDLNNHGTHVAGIAAAETNNATG--------IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYA 123 (280)
T ss_dssp ------------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHH
T ss_pred ------------CCCCCCCCcHHHHHHHHhCcCCCCCc--------ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHH
Confidence 23678899999999999998543322 37999999999999998776 7888999999999
Q ss_pred HhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 270 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
+++|++|||||||... ....+..++.++.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 124 ~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T 1dbi_A 124 ADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HHCCCCEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------
Confidence 9999999999999853 235677788899999999999999999887778888999999998421
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.+.+++||++||.. ||+|||
T Consensus 188 ----------------------------------------------------~~~~~~~S~~G~~~--------dv~ApG 207 (280)
T 1dbi_A 188 ----------------------------------------------------YDRLASFSNYGTWV--------DVVAPG 207 (280)
T ss_dssp ----------------------------------------------------TSCBCTTBCCSTTC--------CEEEEC
T ss_pred ----------------------------------------------------CCCcCCCCCCCCCc--------eEEEec
Confidence 12578999999854 999999
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccC
Q 004301 510 VNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIAT 589 (762)
Q Consensus 510 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~ 589 (762)
++|+++++.+ .|..++|||||||||||++|||++ |.+++.+||++|++||+++...
T Consensus 208 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~--------- 263 (280)
T 1dbi_A 208 VDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT--------- 263 (280)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB---------
T ss_pred CCeEeecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC---------
Confidence 9999998764 899999999999999999999987 8999999999999999987421
Q ss_pred CCCCCCCCCCCCCcCccccCC
Q 004301 590 GKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 590 ~~~~~~~~~G~G~vd~~~A~~ 610 (762)
...||+|+||+.+|++
T Consensus 264 -----~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 264 -----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----TTTBSSEECCHHHHHT
T ss_pred -----CCcccCCEECHHHHhc
Confidence 2479999999999986
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=430.27 Aligned_cols=262 Identities=33% Similarity=0.465 Sum_probs=219.5
Q ss_pred ccCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.|++..+ +.+|..+++|+||+|+|||||| .+||+|+ +...++|..+
T Consensus 5 ~W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~-- 52 (269)
T 1gci_A 5 PWGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPG-- 52 (269)
T ss_dssp CHHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTT--
T ss_pred CcChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCC--
Confidence 3555443 4589999999999999999999 8999994 1223334322
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
...+.|..||||||||||+|..+ . .| +.||||+|+|+.+|+++..+ +..+++++||+|+
T Consensus 53 -----------~~~~~d~~gHGT~vAgiia~~~~-~---~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 112 (269)
T 1gci_A 53 -----------EPSTQDGNGHGTHVAGTIAALNN-S---IG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWA 112 (269)
T ss_dssp -----------CCSCSCSSSHHHHHHHHHHCCCS-S---SB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHH
T ss_pred -----------CCCCCCCCCChHHHHHHHhcCcC-C---CC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHH
Confidence 11256789999999999999731 1 12 37999999999999998776 7788999999999
Q ss_pred HhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 270 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
+++|++|||||||.... ...+..++.++.++|++||+||||+|.....+++..+++|+|||++.
T Consensus 113 ~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 176 (269)
T 1gci_A 113 GNNGMHVANLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------- 176 (269)
T ss_dssp HHTTCSEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------
T ss_pred HHCCCeEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-------------
Confidence 99999999999998542 35677778889999999999999999888888889999999998421
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.+.+++||++||.+ ||+|||
T Consensus 177 ----------------------------------------------------~~~~~~~S~~G~~~--------di~APG 196 (269)
T 1gci_A 177 ----------------------------------------------------NNNRASFSQYGAGL--------DIVAPG 196 (269)
T ss_dssp ----------------------------------------------------TSCBCTTCCCSTTE--------EEEEEC
T ss_pred ----------------------------------------------------CCCCCCCCCCCCCc--------ceEecC
Confidence 12578999999965 999999
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccC
Q 004301 510 VNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIAT 589 (762)
Q Consensus 510 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~ 589 (762)
++|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 197 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------- 252 (269)
T 1gci_A 197 VNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------- 252 (269)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-----------
T ss_pred CCeEeecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC-----------
Confidence 9999998764 8999999999999999999999999999999999999999999873
Q ss_pred CCCCCCCCCCCCCcCccccCC
Q 004301 590 GKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 590 ~~~~~~~~~G~G~vd~~~A~~ 610 (762)
.+..||||+||+.+|++
T Consensus 253 ----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 ----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp ----CHHHHTTCBCCHHHHTC
T ss_pred ----CCCCcccCccCHHHHcC
Confidence 23489999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=432.59 Aligned_cols=262 Identities=31% Similarity=0.444 Sum_probs=217.3
Q ss_pred cCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccc
Q 004301 114 LGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191 (762)
Q Consensus 114 ~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~ 191 (762)
|++..+ ..+|..+++|+||+|+|||||||++||+|+ +...++|..+.
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~~-- 54 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAGE-- 54 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTTC--
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCCC--
Confidence 555443 468999999999999999999999999994 12233343221
Q ss_pred cCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHH
Q 004301 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAI 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 270 (762)
..+.|..||||||||||+|..+ + .| +.||||+|+|+.+|+++..+ +..+++++||+||+
T Consensus 55 -----------~~~~d~~gHGT~vAgiia~~~~-~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~ 114 (274)
T 1r0r_E 55 -----------AYNTDGNGHGTHVAGTVAALDN-T---TG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT 114 (274)
T ss_dssp -----------CTTCCSSSHHHHHHHHHHCCSS-S---SB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred -----------CCCCCCCCCHHHHHHHHHccCC-C---Cc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHH
Confidence 1256789999999999999731 1 12 38999999999999998776 77889999999999
Q ss_pred hCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC----CCccCCCCceEEecCCCCCCccceeEEc
Q 004301 271 DDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS----YSLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 271 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
+++++|||||||.... .+.+..++.++.++|+++|+||||+|... ..+++..|++|+|||++.
T Consensus 115 ~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (274)
T 1r0r_E 115 TNGMDVINMSLGGASG---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------- 181 (274)
T ss_dssp HTTCSEEEECEEBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT----------
T ss_pred HcCCCEEEeCCCCCCC---cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC----------
Confidence 9999999999998542 35677788899999999999999999763 356677889999998421
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
.+.++.||++||. |||+
T Consensus 182 -------------------------------------------------------~~~~~~~S~~G~~--------~di~ 198 (274)
T 1r0r_E 182 -------------------------------------------------------NSNRASFSSVGAE--------LEVM 198 (274)
T ss_dssp -------------------------------------------------------TSCBCTTCCCSTT--------EEEE
T ss_pred -------------------------------------------------------CCCcCccCCCCCC--------ceEE
Confidence 1257889999985 4999
Q ss_pred ecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCccccc
Q 004301 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQD 586 (762)
Q Consensus 507 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~ 586 (762)
|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||+++.
T Consensus 199 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-------- 257 (274)
T 1r0r_E 199 APGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-------- 257 (274)
T ss_dssp EECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------
T ss_pred eCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------
Confidence 9999999998764 8999999999999999999999999999999999999999999873
Q ss_pred ccCCCCCCCCCCCCCCcCccccCC
Q 004301 587 IATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 587 ~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
++..||||+||+.+|++
T Consensus 258 -------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 -------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -------CHHHHTTCBCCHHHHTC
T ss_pred -------CCCCcccCccCHHHHhC
Confidence 23489999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=465.55 Aligned_cols=306 Identities=22% Similarity=0.237 Sum_probs=197.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+..|+||+|||||||||++||+|++..+.+....|+..++........ .+..+.. ....++..........
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~ 97 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRD--QGLKGKEKEEALEAVI 97 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHH--HTCCSHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccC--cccccccccccccccc
Confidence 458999999999999999999999999999876666677776654422110000 0000000 0000000000000000
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC------CCHHHHHHHHHHHHhCC
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG------CFSSDILAAIEQAIDDN 273 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~~i~~ai~~a~~~g 273 (762)
.+..++.|.+||||||||||||+..+ .+.||||+|+|+.+|++.... ....++++||+||+++|
T Consensus 98 ~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g 167 (357)
T 4h6x_A 98 PDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELG 167 (357)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcC
Confidence 11123557789999999999997422 248999999999999975321 34557889999999999
Q ss_pred CcEEEEccCCCC-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 274 VNVLSMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 274 ~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
++|||||||... .....+.+..++.++.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 168 ~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------- 231 (357)
T 4h6x_A 168 ANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV---------------- 231 (357)
T ss_dssp CSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT----------------
T ss_pred CCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc----------------
Confidence 999999999764 334456788888899999999999999999888888888999999998432
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
.+.+++|||||+. ..||||+|||++|
T Consensus 232 -------------------------------------------------~~~~~~fSn~G~~-----~~~~di~APG~~i 257 (357)
T 4h6x_A 232 -------------------------------------------------DGTPCHFSNWGGN-----NTKEGILAPGEEI 257 (357)
T ss_dssp -------------------------------------------------TSSBCTTCC---C-----TTTTEEEEECSSE
T ss_pred -------------------------------------------------CCcccccccCCCC-----CCccceeecCCCe
Confidence 1267899999975 4589999999999
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccccCCccccccc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPAAIRSALMTTAYVSYKNGQKLQDIA 588 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 588 (762)
+++++.+ ..|..++|||||||||||++|||+++ +|.|+++|||++|++||++++..
T Consensus 258 ~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-------- 317 (357)
T 4h6x_A 258 LGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-------- 317 (357)
T ss_dssp EECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---------------
T ss_pred EeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC--------
Confidence 9998765 25778999999999999999999954 66899999999999999987531
Q ss_pred CCCCCCCCCCCCCCcCccccCC
Q 004301 589 TGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 589 ~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
....+..||+|+||+.+|++
T Consensus 318 --~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 --VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ---------CTTCBCCHHHHHH
T ss_pred --CCCCcccceeEEecHHHHHH
Confidence 23345689999999999997
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=430.00 Aligned_cols=265 Identities=33% Similarity=0.462 Sum_probs=218.4
Q ss_pred ccCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.|++..+ ..+|..+++|+||+|||||||||++||+|+. ...++|..+.
T Consensus 5 ~w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~- 54 (281)
T 1to2_E 5 PYGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPSE- 54 (281)
T ss_dssp CHHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTTC-
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCCC-
Confidence 3555543 4589999999999999999999999999942 2223332210
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
.....|..||||||||||+|..+ . .| +.||||+|+|+.+|+++..+ +..+++++||+|+
T Consensus 55 -----------~~~~~d~~gHGT~vAgiia~~~~-~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 114 (281)
T 1to2_E 55 -----------TNPFQDNNSHGTHVAGTVAALNN-S---IG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWA 114 (281)
T ss_dssp -----------CCTTCCSSSHHHHHHHHHHCCSS-S---SS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred -----------CCCCCCCCCcHHHHHHHHhccCC-C---Cc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHH
Confidence 11236789999999999999731 1 11 38999999999999998776 7788999999999
Q ss_pred HhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC----CCccCCCCceEEecCCCCCCccceeEE
Q 004301 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS----YSLSNVAPWITTVGAGTLDRDFPAFVS 345 (762)
Q Consensus 270 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgA~~~~~~~~~~~~ 345 (762)
++++++|||||||.... ...+..++.++.++|++||+||||+|... ..+++..|++|+|||++.
T Consensus 115 ~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (281)
T 1to2_E 115 IANNMDVINMSLGGPSG---SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp HHTTCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred HHCCCcEEEECCcCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC---------
Confidence 99999999999998542 35677788899999999999999999763 356777889999997421
Q ss_pred cCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEE
Q 004301 346 LGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMV 425 (762)
Q Consensus 346 ~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i 425 (762)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcE
Q 004301 426 LANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDM 505 (762)
Q Consensus 426 ~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 505 (762)
.+.+++||++||.. ||
T Consensus 183 --------------------------------------------------------~~~~~~fS~~G~~~--------di 198 (281)
T 1to2_E 183 --------------------------------------------------------SNQRASFSSVGPEL--------DV 198 (281)
T ss_dssp --------------------------------------------------------TSCBCTTCCCSTTC--------CE
T ss_pred --------------------------------------------------------CCCcCCcCCCCCCc--------eE
Confidence 12578999999954 99
Q ss_pred EecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccc
Q 004301 506 IAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQ 585 (762)
Q Consensus 506 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~ 585 (762)
+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 199 ~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------- 258 (281)
T 1to2_E 199 MAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------- 258 (281)
T ss_dssp EEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-------
T ss_pred EecCCCeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-------
Confidence 99999999998764 7999999999999999999999999999999999999999999873
Q ss_pred cccCCCCCCCCCCCCCCcCccccCCC
Q 004301 586 DIATGKASTPFDHGAGHVNPVSALNP 611 (762)
Q Consensus 586 ~~~~~~~~~~~~~G~G~vd~~~A~~~ 611 (762)
+++.||||+||+.+|+++
T Consensus 259 --------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 --------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --------CHHHHTTCBCCHHHHTSS
T ss_pred --------CCCCcccceecHHHHhhh
Confidence 234899999999999974
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=427.31 Aligned_cols=264 Identities=28% Similarity=0.397 Sum_probs=220.0
Q ss_pred ccCCcC--CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDK--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.|++.. +..+|... +|+||+|||||||||++||+|.++ ++..++|.++.
T Consensus 12 ~w~l~~i~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~- 62 (279)
T 1thm_A 12 QYGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDND- 62 (279)
T ss_dssp CCHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTTB-
T ss_pred ccChhhCChHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC---------------------------ccccccccCCC-
Confidence 345443 34588876 699999999999999999999742 44444554321
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
..+.|..||||||||||+|...+..+ +.||||+|+|+.+|++++.+ ++..++++||+||
T Consensus 63 ------------~~~~d~~gHGT~vAgiia~~~~n~~g--------~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 122 (279)
T 1thm_A 63 ------------STPQNGNGHGTHCAGIAAAVTNNSTG--------IAGTAPKASILAVRVLDNSGSGTWTAVANGITYA 122 (279)
T ss_dssp ------------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred ------------CCCCCCCCcHHHHHHHHhCccCCCCc--------cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHH
Confidence 23578899999999999998644322 37999999999999998776 7788999999999
Q ss_pred HhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 270 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
+++|++|||||||... ..+.+..++.++.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 123 ~~~g~~Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 186 (279)
T 1thm_A 123 ADQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp HHTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred HHCCCCEEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------
Confidence 9999999999999853 235677788899999999999999999888888888999999998431
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.+.++.||++||.. ||+|||
T Consensus 187 ----------------------------------------------------~~~~~~fS~~G~~~--------dv~APG 206 (279)
T 1thm_A 187 ----------------------------------------------------NDNKSSFSTYGSWV--------DVAAPG 206 (279)
T ss_dssp ----------------------------------------------------TSCBCTTCCCCTTC--------CEEEEC
T ss_pred ----------------------------------------------------CCCcCCcCCCCCce--------EEEEcC
Confidence 12578999999864 999999
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccC
Q 004301 510 VNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIAT 589 (762)
Q Consensus 510 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~ 589 (762)
++|+++++.+ .|..++|||||||||||++||| ++|.+++++||++|++||+++...+
T Consensus 207 ~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~-------- 263 (279)
T 1thm_A 207 SSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG-------- 263 (279)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT--------
T ss_pred CCeEEEeCCC-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC--------
Confidence 9999998764 8999999999999999999999 5799999999999999999875321
Q ss_pred CCCCCCCCCCCCCcCccccCC
Q 004301 590 GKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 590 ~~~~~~~~~G~G~vd~~~A~~ 610 (762)
..||+|+||+.+|++
T Consensus 264 ------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 264 ------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ------TTBSSEECCHHHHHH
T ss_pred ------ccccCCeeCHHHHhc
Confidence 378999999999975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=442.07 Aligned_cols=271 Identities=27% Similarity=0.409 Sum_probs=218.2
Q ss_pred cccCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccc
Q 004301 112 EFLGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGY 189 (762)
Q Consensus 112 ~~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~ 189 (762)
..|++..+ ..+|..+++|+||+|||||||||++||+|.+ +++..++|..++
T Consensus 21 ~~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~ 73 (327)
T 2x8j_A 21 VPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDY 73 (327)
T ss_dssp CCHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGG
T ss_pred cCcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCC
Confidence 34665543 5689999999999999999999999999974 344555565443
Q ss_pred cccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHH
Q 004301 190 EATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQ 268 (762)
Q Consensus 190 ~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ 268 (762)
.. +.....|..||||||||||+|..+ +. | +.||||+|+|+.+|+++..+ +..+++++||+|
T Consensus 74 ~~---------~~~~~~d~~gHGT~VAgiia~~~~-~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~ 135 (327)
T 2x8j_A 74 GG---------DETNFSDNNGHGTHVAGTVAAAET-GS---G-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRY 135 (327)
T ss_dssp GG---------CTTCCCCSSSHHHHHHHHHHCCCC-SS---B-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred CC---------CCCCCCCCCCchHHHHHHHhccCC-CC---C-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHH
Confidence 11 112356889999999999999732 11 1 38999999999999998776 778899999999
Q ss_pred HHh------CCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCC-----CCccCCCCceEEecCCCCC
Q 004301 269 AID------DNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSS-----YSLSNVAPWITTVGAGTLD 337 (762)
Q Consensus 269 a~~------~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~ 337 (762)
|++ ++++|||||||... ....+..++.++.++|++||+||||+|... ..+++..|++|+|||++.
T Consensus 136 a~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~- 211 (327)
T 2x8j_A 136 AVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF- 211 (327)
T ss_dssp HHHCCCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT-
T ss_pred HHhhcccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC-
Confidence 999 89999999999854 235677778889999999999999999752 356778899999998431
Q ss_pred CccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHH
Q 004301 338 RDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVK 417 (762)
Q Consensus 338 ~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~ 417 (762)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCC
Q 004301 418 AAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSIT 497 (762)
Q Consensus 418 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 497 (762)
.+.++.||++||.
T Consensus 212 ----------------------------------------------------------------~~~~~~fS~~G~~--- 224 (327)
T 2x8j_A 212 ----------------------------------------------------------------DLRLSDFTNTNEE--- 224 (327)
T ss_dssp ----------------------------------------------------------------TCCBSCC---CCC---
T ss_pred ----------------------------------------------------------------CCCCCCccCCCCC---
Confidence 1267899999984
Q ss_pred CCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhh-----CCCCCHHHHHHHHHh
Q 004301 498 PELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA-----HPEWSPAAIRSALMT 572 (762)
Q Consensus 498 ~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~p~~sp~~ik~~L~~ 572 (762)
|||+|||++|+++++.+ .|..++|||||||||||++|||+|+ +|.+++.+||++|++
T Consensus 225 -----~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~ 286 (327)
T 2x8j_A 225 -----IDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVR 286 (327)
T ss_dssp -----CSEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHT
T ss_pred -----ceEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHH
Confidence 49999999999998764 7999999999999999999999999 999999999999999
Q ss_pred cccccccCCcccccccCCCCCCCCCCCCCCcCccccCC
Q 004301 573 TAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 573 TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
||+++. .++..||+|++|+.+|++
T Consensus 287 tA~~~g--------------~~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 287 RATPIG--------------FTAQAEGNGFLTLDLVER 310 (327)
T ss_dssp TEECCS--------------SCHHHHTTCEECTTHHHH
T ss_pred hCccCC--------------CCCCceeeeEECHHHHHH
Confidence 999863 134589999999999997
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-50 Score=430.62 Aligned_cols=289 Identities=30% Similarity=0.398 Sum_probs=226.6
Q ss_pred ccCCcC--CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDK--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.|++.. +..+|..+++|+||+|||||||||++||+|.++ +...++|.....
T Consensus 7 ~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~ 59 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT 59 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS
T ss_pred CCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC
Confidence 355544 467999999999999999999999999999753 333444443210
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
.......|..||||||||||+|....+ ...+.||||+|+|+.+|++++.+ ++.+++++||+|+
T Consensus 60 ---------~~~~~~~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 123 (310)
T 2ixt_A 60 ---------PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (310)
T ss_dssp ---------CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred ---------CCCCCCCCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHH
Confidence 011235678999999999999985221 12248999999999999998776 6888999999999
Q ss_pred HhCCC-----cEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCC--CCCccCCCCceEEecCCCCCCccce
Q 004301 270 IDDNV-----NVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPS--SYSLSNVAPWITTVGAGTLDRDFPA 342 (762)
Q Consensus 270 ~~~g~-----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVgA~~~~~~~~~ 342 (762)
+++++ +|||||||.... ...+..++.++.++|++||+||||+|.. ...+++..|++|+|||++....
T Consensus 124 ~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~--- 197 (310)
T 2ixt_A 124 ADQATATGTKTIISMSLGSSAN---NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ--- 197 (310)
T ss_dssp HHHHHHHTCCEEEEECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE---
T ss_pred HHhhhccCCCeEEEEcCCCCCC---CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc---
Confidence 99887 999999998542 4567777788999999999999999976 3456778899999998431000
Q ss_pred eEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCce
Q 004301 343 FVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGL 422 (762)
Q Consensus 343 ~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~ 422 (762)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCC----C
Q 004301 423 GMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSIT----P 498 (762)
Q Consensus 423 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~----~ 498 (762)
.....++.||++||.... .
T Consensus 198 ---------------------------------------------------------~g~~~~~~~S~~G~~~~~g~~~~ 220 (310)
T 2ixt_A 198 ---------------------------------------------------------NGTYRVADYSSRGYISTAGDYVI 220 (310)
T ss_dssp ---------------------------------------------------------TTEEEECTTSCCCCTTTTTSSSC
T ss_pred ---------------------------------------------------------CCCeeeccccCCCCccCCccccc
Confidence 000157889999995321 1
Q ss_pred CCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 004301 499 ELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSY 578 (762)
Q Consensus 499 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~ 578 (762)
.+.||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||++++
T Consensus 221 ~~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 287 (310)
T 2ixt_A 221 QEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287 (310)
T ss_dssp CTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSC
T ss_pred cCCCeeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC
Confidence 345999999999999998764 7999999999999999999999999999999999999999999876
Q ss_pred cCCcccccccCCCCCCCCCCCCCCcCc
Q 004301 579 KNGQKLQDIATGKASTPFDHGAGHVNP 605 (762)
Q Consensus 579 ~~g~~~~~~~~~~~~~~~~~G~G~vd~ 605 (762)
..+. ....++.+..||||++|+
T Consensus 288 ~~~~-----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 288 IKGG-----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp CCBS-----TTCCSSSBTTTBTCBCCC
T ss_pred CCCC-----cccccCCccccccceeec
Confidence 4321 113566778999999986
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-51 Score=432.52 Aligned_cols=264 Identities=23% Similarity=0.257 Sum_probs=209.6
Q ss_pred CCCC-CCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004301 126 SGSA-SEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKS 204 (762)
Q Consensus 126 ~~~G-~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
.++| +||+|||||||||++||+|+++ ++..+++... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~---------------------------~~~~~~~~~~-----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA---------------------------DLTVLPTLAP-----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC---------------------------EEEECCCSSC-----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC---------------------------eeecCcCCCC-----------CCCCC
Confidence 3578 7999999999999999999753 1111111111 01112
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVLSMSLG 282 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 282 (762)
..|.+||||||||||+|+..+ .+.||||+|+|+.+|++.+.+ .+..++++||+||++++++|||||||
T Consensus 45 d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G 114 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGG 114 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCc
Confidence 334679999999999997422 247999999999999986553 67778999999999999999999999
Q ss_pred CCC-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCC
Q 004301 283 GGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGD 361 (762)
Q Consensus 283 ~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~ 361 (762)
... .......+..++..+.++|+++|+||||+|.....+++..|++|+|||.+.
T Consensus 115 ~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------- 169 (282)
T 3zxy_A 115 ELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD------------------------- 169 (282)
T ss_dssp EEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-------------------------
T ss_pred cccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-------------------------
Confidence 754 233345677788899999999999999999988888889999999998431
Q ss_pred CCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCc
Q 004301 362 GLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAH 441 (762)
Q Consensus 362 ~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 441 (762)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCC
Q 004301 442 LLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVG 521 (762)
Q Consensus 442 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 521 (762)
.+.++.||+||+. ..||||+|||++|+++++.+
T Consensus 170 ----------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~~-- 202 (282)
T 3zxy_A 170 ----------------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPGG-- 202 (282)
T ss_dssp ----------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTTS--
T ss_pred ----------------------------------------CCccccccCCCCC-----ccccceeccCcceeeecCCC--
Confidence 1256889999875 35889999999999998875
Q ss_pred CCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC----CCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCC
Q 004301 522 PTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH----PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFD 597 (762)
Q Consensus 522 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 597 (762)
.|..++|||||||||||++|||+|++ |.++|+|||++|++||++++. ..+.....
T Consensus 203 -----------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~----------~~~~~~~~ 261 (282)
T 3zxy_A 203 -----------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDD----------DAPEQARR 261 (282)
T ss_dssp -----------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-----------------CGG
T ss_pred -----------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCC----------CCCCccCc
Confidence 79999999999999999999999874 789999999999999998743 22344558
Q ss_pred CCCCCcCccccCC
Q 004301 598 HGAGHVNPVSALN 610 (762)
Q Consensus 598 ~G~G~vd~~~A~~ 610 (762)
||+|+||+.+|++
T Consensus 262 ~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 262 CLAGRLNVSGAFT 274 (282)
T ss_dssp GTTCBCCHHHHHH
T ss_pred eeeeEeCHHHHHH
Confidence 9999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=437.30 Aligned_cols=271 Identities=31% Similarity=0.417 Sum_probs=221.1
Q ss_pred ccCCcC--CCCCCcCCCCCC--CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccc
Q 004301 113 FLGLDK--SANLFPTSGSAS--EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188 (762)
Q Consensus 113 ~~g~~~--~~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~ 188 (762)
.|++.. +..+|..+ +|+ ||+|||||||||++||+|.++ +...++|..+
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~ 60 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRG 60 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGG
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCC
Confidence 455544 35689988 899 999999999999999999742 3333444332
Q ss_pred ccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHH
Q 004301 189 YEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIE 267 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~ 267 (762)
... ....+..|..||||||||||+|.. ++ .| +.||||+|+|+.+|+++..| +..+++++||+
T Consensus 61 ~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~ 123 (320)
T 2z30_A 61 KVS--------TKLRDCADQNGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIE 123 (320)
T ss_dssp CCB--------CCHHHHBCSSSHHHHHHHHHHCCS-SS---BS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHH
T ss_pred ccC--------CCCCCCCCCCCCHHHHHHHHHccc-CC---Cc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHH
Confidence 110 000123678999999999999972 11 12 37999999999999998777 77889999999
Q ss_pred HHHhC--------------------CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCc
Q 004301 268 QAIDD--------------------NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPW 327 (762)
Q Consensus 268 ~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~ 327 (762)
||+++ +++|||||||.... ...+..++.++.++|++||+||||+|.....+++..|+
T Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~ 200 (320)
T 2z30_A 124 QAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPE 200 (320)
T ss_dssp HHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTT
T ss_pred HHHhCcccccccccccccccccccCCceEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCC
Confidence 99987 99999999998542 35667777789999999999999999887888889999
Q ss_pred eEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCc
Q 004301 328 ITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVN 407 (762)
Q Consensus 328 vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~ 407 (762)
+|+|||++.
T Consensus 201 vi~Vga~~~----------------------------------------------------------------------- 209 (320)
T 2z30_A 201 VIAVGAIDS----------------------------------------------------------------------- 209 (320)
T ss_dssp EEEEEEECT-----------------------------------------------------------------------
T ss_pred eEEEEeeCC-----------------------------------------------------------------------
Confidence 999998431
Q ss_pred hhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeec
Q 004301 408 ARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAA 487 (762)
Q Consensus 408 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 487 (762)
.+.+++
T Consensus 210 --------------------------------------------------------------------------~~~~~~ 215 (320)
T 2z30_A 210 --------------------------------------------------------------------------NDNIAS 215 (320)
T ss_dssp --------------------------------------------------------------------------TSCBCT
T ss_pred --------------------------------------------------------------------------CCCcCc
Confidence 125788
Q ss_pred ccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC---------
Q 004301 488 FSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH--------- 558 (762)
Q Consensus 488 fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~--------- 558 (762)
||++|| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 216 ~S~~g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~ 272 (320)
T 2z30_A 216 FSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILP 272 (320)
T ss_dssp TSCSSC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCCC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccc
Confidence 999997 7899999999998764 89999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCC
Q 004301 559 ----PEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNP 611 (762)
Q Consensus 559 ----p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 611 (762)
|.|++.+||++|++||+++.. +..+..||||+||+.+|++.
T Consensus 273 ~~~~p~lt~~~v~~~L~~ta~~~~~------------~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 273 VGTFDDISKNTVRGILHITADDLGP------------TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCTTCCSTTSHHHHHHHHSBCCSS------------SSSBTTTBTCBCCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcCCceeCHHHHHHH
Confidence 999999999999999998732 33456899999999999863
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=439.35 Aligned_cols=277 Identities=20% Similarity=0.118 Sum_probs=220.4
Q ss_pred ccCCcC--CCCCCcCCCCCC--CcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccc
Q 004301 113 FLGLDK--SANLFPTSGSAS--EVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARG 188 (762)
Q Consensus 113 ~~g~~~--~~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~ 188 (762)
.|++.. +..+|.. .+|+ ||+||||||||| +||+|.++ ++..++|..+
T Consensus 24 ~W~l~~i~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~ 74 (347)
T 2iy9_A 24 PWYFDAIGLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQD 74 (347)
T ss_dssp CHHHHHHTCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTT
T ss_pred CcchhhCChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCC
Confidence 355443 3568987 8999 999999999999 99999753 3334444432
Q ss_pred ccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHH
Q 004301 189 YEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQ 268 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~ 268 (762)
.. +.+...+.|..||||||||||+|+ .| +.||||+|+|+.+|++++.+.. ++++||+|
T Consensus 75 ~~--------~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~ 132 (347)
T 2iy9_A 75 GS--------PFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGVQD--SWIRAIES 132 (347)
T ss_dssp CC--------SSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHHH
T ss_pred CC--------CCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCCHH--HHHHHHHH
Confidence 10 111124567889999999999997 12 2799999999999999775533 99999999
Q ss_pred HHhC------CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCC-------CCCccCCCC---------
Q 004301 269 AIDD------NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPS-------SYSLSNVAP--------- 326 (762)
Q Consensus 269 a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p--------- 326 (762)
|+++ |++|||||||........+.+..++.++.++|++||+||||+|.. ...+++..+
T Consensus 133 a~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~ 212 (347)
T 2iy9_A 133 IMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQ 212 (347)
T ss_dssp HHTCTTSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHT
T ss_pred HHhhhhcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCcccccccccc
Confidence 9999 999999999976544456778888889999999999999999975 346677778
Q ss_pred -ceEEecCCCC--CCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEe
Q 004301 327 -WITTVGAGTL--DRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCD 403 (762)
Q Consensus 327 -~vitVgA~~~--~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~ 403 (762)
++|+|||++. +...
T Consensus 213 ~~vi~Vga~~~~~~g~~--------------------------------------------------------------- 229 (347)
T 2iy9_A 213 DPVIRVAALAQYRKGET--------------------------------------------------------------- 229 (347)
T ss_dssp CCEEEEEEECCCCTTSC---------------------------------------------------------------
T ss_pred CCEEEEEEcccCCCCce---------------------------------------------------------------
Confidence 9999998643 1110
Q ss_pred CCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCC
Q 004301 404 RGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSP 483 (762)
Q Consensus 404 ~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 483 (762)
....+
T Consensus 230 ---------------------------------------------------------------------------~~~~~ 234 (347)
T 2iy9_A 230 ---------------------------------------------------------------------------PVLHG 234 (347)
T ss_dssp ---------------------------------------------------------------------------CCBCC
T ss_pred ---------------------------------------------------------------------------ecccC
Confidence 00011
Q ss_pred eeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCH
Q 004301 484 VVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSP 563 (762)
Q Consensus 484 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp 563 (762)
.+++||++||+ ||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++
T Consensus 235 ~~~~fS~~G~~-------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~ 294 (347)
T 2iy9_A 235 GGITGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATA 294 (347)
T ss_dssp CSSSCBCBCTT-------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred CCCCCCCCCCC-------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCH
Confidence 45799999995 679999999999998864 7999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCC
Q 004301 564 AAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNP 611 (762)
Q Consensus 564 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 611 (762)
.+||++|++||+++...+ ...||+|+||+.+|++.
T Consensus 295 ~~v~~~L~~tA~~~~~~~-------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 295 TELKRTLLESADKYPSLV-------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHHHHHHHHSEECGGGT-------------TTSGGGEECCHHHHHHH
T ss_pred HHHHHHHHHhCccCCCCC-------------CccccCCEecHHHHHHH
Confidence 999999999999875321 24899999999999983
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=432.57 Aligned_cols=270 Identities=25% Similarity=0.290 Sum_probs=216.3
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
+++|+....++||+|||||||||++||+|.++ .+.+..++..+.
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~---------- 54 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE---------- 54 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC----------
Confidence 45899888779999999999999999999753 122222222221
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC--CCHHHHHHHHHHHHhCCCcEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG--CFSSDILAAIEQAIDDNVNVL 277 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVI 277 (762)
.....|.+||||||||||+|+... .+.||||+|+|+++|++.+.+ ....++++||+||+++|++||
T Consensus 55 --~~~~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi 122 (306)
T 4h6w_A 55 --ANANGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANII 122 (306)
T ss_dssp ------CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceee
Confidence 112446789999999999997421 248999999999999997653 677889999999999999999
Q ss_pred EEccCCCC-CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEe
Q 004301 278 SMSLGGGT-SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVS 356 (762)
Q Consensus 278 n~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s 356 (762)
|+|||... .......+..++..+.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 123 ~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~-------------------- 182 (306)
T 4h6w_A 123 NVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD-------------------- 182 (306)
T ss_dssp EECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT--------------------
T ss_pred eccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC--------------------
Confidence 99999643 233445677788899999999999999999888888888899999998432
Q ss_pred eecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccc
Q 004301 357 LYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEEL 436 (762)
Q Consensus 357 ~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 436 (762)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecc
Q 004301 437 VADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGW 516 (762)
Q Consensus 437 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 516 (762)
.+.+++||++|+. ..||||+|||++|++++
T Consensus 183 ---------------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~ 212 (306)
T 4h6w_A 183 ---------------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAK 212 (306)
T ss_dssp ---------------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEEC
T ss_pred ---------------------------------------------CCCccccccccCC-----cCcceeecCCcCccccc
Confidence 1256789999974 35889999999999998
Q ss_pred cCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccccCCcccccccCCCC
Q 004301 517 SGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA----HPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKA 592 (762)
Q Consensus 517 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 592 (762)
+.+ .|..++|||||||||||++|||+++ +|.|+|+|||++|++||+++...+ .
T Consensus 213 ~~~-------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~----------~ 269 (306)
T 4h6w_A 213 PNG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD----------T 269 (306)
T ss_dssp TTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT----------C
T ss_pred CCC-------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC----------C
Confidence 875 7999999999999999999999864 699999999999999999875322 1
Q ss_pred CCCCCCCCCCcCccccCC
Q 004301 593 STPFDHGAGHVNPVSALN 610 (762)
Q Consensus 593 ~~~~~~G~G~vd~~~A~~ 610 (762)
.....||+|+||+.+|++
T Consensus 270 ~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 270 DDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp SCGGGGTTCBCCHHHHHH
T ss_pred CCCCCcceeecCHHHHHH
Confidence 223479999999999997
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=429.91 Aligned_cols=303 Identities=24% Similarity=0.324 Sum_probs=220.7
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+++|+||+||||||||+ +||+|.++-.. .|+-......................+.+.+.. ...
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~ 91 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWAC----GGR 91 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTT----SCT
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccc----cCC
Confidence 356999999999999999999998 99999864111 111000000000000000000000000000000 001
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-------
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID------- 271 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------- 271 (762)
+.+.....|..||||||||||+|...+..+ +.||||+|+|+.+|+++..++..+++++||+||++
T Consensus 92 ~~~~~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~ 163 (340)
T 3lpc_A 92 PDPRKERSDSSWHGSHVAGTIAAVTNNRIG--------VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIP 163 (340)
T ss_dssp TCGGGSCBCCCCHHHHHHHHHHCCCSSSSS--------CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSC
T ss_pred CCcccCCCCCCCCHHHHHHHHHccCCCCCc--------ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccc
Confidence 122234578899999999999998654332 37999999999999998888889999999999998
Q ss_pred ---CCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcC
Q 004301 272 ---DNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLG 347 (762)
Q Consensus 272 ---~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~ 347 (762)
.+++|||||||.... ....+..++.++.++|++||+||||+|.... .+++..+++|+|||++.
T Consensus 164 ~~~~~~~Vin~S~G~~~~--~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------- 230 (340)
T 3lpc_A 164 ENRNPAKVINMSLGSDGQ--CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS----------- 230 (340)
T ss_dssp CCSSCCSEEEECCCEESC--CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-----------
T ss_pred cccCCCeEEEeCcCCCCC--cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-----------
Confidence 899999999997432 2345667777899999999999999997654 46778899999998431
Q ss_pred CCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEe
Q 004301 348 NGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLA 427 (762)
Q Consensus 348 ~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~ 427 (762)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEe
Q 004301 428 NTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIA 507 (762)
Q Consensus 428 n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 507 (762)
.+.++.||++|| ||||+|
T Consensus 231 ------------------------------------------------------~~~~~~~S~~g~--------~~di~A 248 (340)
T 3lpc_A 231 ------------------------------------------------------RGIRASFSNYGV--------DVDLAA 248 (340)
T ss_dssp ------------------------------------------------------TSSBCTTCCBST--------TCCEEE
T ss_pred ------------------------------------------------------CCCcCCCCCCCC--------CceEEe
Confidence 126789999998 459999
Q ss_pred cCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhh-C---CCCCHHHHHHHHHhcccccccCCcc
Q 004301 508 PGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA-H---PEWSPAAIRSALMTTAYVSYKNGQK 583 (762)
Q Consensus 508 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---p~~sp~~ik~~L~~TA~~~~~~g~~ 583 (762)
||++|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++|++||+++..
T Consensus 249 pG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~---- 318 (340)
T 3lpc_A 249 PGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG---- 318 (340)
T ss_dssp ECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS----
T ss_pred cCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC----
Confidence 999999998765321 11236999999999999999999999998 5 999999999999999998741
Q ss_pred cccccCCCCCCCCCCCCCCcCccccCCCC
Q 004301 584 LQDIATGKASTPFDHGAGHVNPVSALNPG 612 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~G~G~vd~~~A~~~~ 612 (762)
.....||||+||+.+|++..
T Consensus 319 ---------~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 319 ---------RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp ---------CCSSCCCSSBCCHHHHHHHH
T ss_pred ---------CCCCCcccceecHHHHHHHH
Confidence 23458999999999998743
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=436.81 Aligned_cols=291 Identities=26% Similarity=0.313 Sum_probs=223.0
Q ss_pred CCCCc-CCCCCCCcEEEEEcccCCC------CCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccccc
Q 004301 120 ANLFP-TSGSASEVIVGVLDTGVWP------ESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEAT 192 (762)
Q Consensus 120 ~~~~~-~~~~G~Gv~VgVIDtGid~------~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~ 192 (762)
+.+|. .+++|+||+|||||||||+ .||+|.++ ++..++|...
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------------i~~~~~~~~~---- 59 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------------ITALYALGRT---- 59 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------------EEEEEETTTT----
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------------EeeeccccCC----
Confidence 45887 7999999999999999999 79999642 3333444321
Q ss_pred CCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCC---CHHHHHHHHHHH
Q 004301 193 LGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGC---FSSDILAAIEQA 269 (762)
Q Consensus 193 ~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~a 269 (762)
..+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..|. ...++.++|++|
T Consensus 60 ----------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a 118 (434)
T 1wmd_A 60 ----------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQA 118 (434)
T ss_dssp ----------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHH
T ss_pred ----------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHH
Confidence 2367889999999999998631 1379999999999999987663 456899999999
Q ss_pred HhCCCcEEEEccCCCCCCCcccHHHHHHHHH-HhcCCEEEEecCCCCCCC--CCccCCCCceEEecCCCCCCccceeEEc
Q 004301 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGAFAA-MEKGILVSCSAGNAGPSS--YSLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 270 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
+++|++|||||||......+ +....++.++ .++|+++|+||||+|... ...++.++++|+|||++..+....
T Consensus 119 ~~~g~~Vin~S~G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~~---- 193 (434)
T 1wmd_A 119 YSAGARIHTNSWGAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG---- 193 (434)
T ss_dssp HHTTCSEEEECCCBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC----
T ss_pred HhcCCeEEEecCCCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcccC----
Confidence 99999999999998652222 2334444444 589999999999999764 356778899999999654321000
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
.
T Consensus 194 --------------------------------------------------------------------------~----- 194 (434)
T 1wmd_A 194 --------------------------------------------------------------------------S----- 194 (434)
T ss_dssp --------------------------------------------------------------------------G-----
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
.....+.+++||++||+.+ +++||||+
T Consensus 195 ---------------------------------------------------~~~~~~~~a~fS~~G~~~~--g~~kpdi~ 221 (434)
T 1wmd_A 195 ---------------------------------------------------YADNINHVAQFSSRGPTKD--GRIKPDVM 221 (434)
T ss_dssp ---------------------------------------------------GGSCTTSBCTTSCCCCCTT--SCCCCCEE
T ss_pred ---------------------------------------------------ccCCCCccccccCCCCCCC--CCCCceEE
Confidence 0012347899999999986 89999999
Q ss_pred ecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCC-----CHHHHHHHHHhcccccccCC
Q 004301 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW-----SPAAIRSALMTTAYVSYKNG 581 (762)
Q Consensus 507 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~-----sp~~ik~~L~~TA~~~~~~g 581 (762)
|||++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.
T Consensus 222 ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~--- 297 (434)
T 1wmd_A 222 APGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG--- 297 (434)
T ss_dssp EECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS---
T ss_pred cCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC---
Confidence 9999999998643110000 00012479999999999999999999999998875 89999999999998752
Q ss_pred cccccccCCCCCCCCCCCCCCcCccccCCCC
Q 004301 582 QKLQDIATGKASTPFDHGAGHVNPVSALNPG 612 (762)
Q Consensus 582 ~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~ 612 (762)
..++.+.||||++|+.+|++..
T Consensus 298 ---------~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 298 ---------LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp ---------SCSSCTTTTTCBCCHHHHHTCE
T ss_pred ---------CCCCCccCCcCeEeHHHhcccc
Confidence 2345679999999999999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=407.88 Aligned_cols=235 Identities=28% Similarity=0.421 Sum_probs=200.5
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+++|+||+|||||||||++||+|.++ ++..++|....
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~~---------- 61 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDND---------- 61 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTTB----------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCCC----------
Confidence 45899999999999999999999999999753 33334444321
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC--CCcE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD--NVNV 276 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dV 276 (762)
.++.|..||||||||||+|+. .||||+|+|+.+|++++.+ ++.+++++||+|++++ +++|
T Consensus 62 ---~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~V 124 (284)
T 1sh7_A 62 ---ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSV 124 (284)
T ss_dssp ---SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEE
T ss_pred ---CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcE
Confidence 236788999999999999873 6999999999999998876 7888999999999984 7999
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeE
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (762)
||||||... ...+..++.++.++|++||+||||+|.... .+++..|++|+|||++.
T Consensus 125 in~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 181 (284)
T 1sh7_A 125 ANMSLGGGQ----STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS------------------- 181 (284)
T ss_dssp EEECCCBSC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT-------------------
T ss_pred EEeCCCCCC----CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC-------------------
Confidence 999999853 356777777899999999999999997653 55778899999998431
Q ss_pred eeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc
Q 004301 356 SLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435 (762)
Q Consensus 356 s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 435 (762)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 004301 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 436 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 515 (762)
.+.+++||++||.. ||+|||++|+++
T Consensus 182 ----------------------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~ 207 (284)
T 1sh7_A 182 ----------------------------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSA 207 (284)
T ss_dssp ----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCcccCCCCcc--------EEEeccCCeEEe
Confidence 12678999999965 999999999999
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSY 578 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~ 578 (762)
++.+ .|..++|||||||||||++|||+|++|+++++|||++|++||++..
T Consensus 208 ~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 208 WYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred cCCC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 8764 7999999999999999999999999999999999999999998763
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-48 Score=462.60 Aligned_cols=355 Identities=21% Similarity=0.220 Sum_probs=246.0
Q ss_pred CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC---CCHHHHHHHHHHHHh-----CCCcEE
Q 004301 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG---CFSSDILAAIEQAID-----DNVNVL 277 (762)
Q Consensus 206 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~dVI 277 (762)
.|++||||||||||||.. ++. .+.||||+|+|+.+|+++..+ .+..+++.+|.+|++ +|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~~--------g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SSR--------DVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SSS--------SSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CCC--------CceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999986 222 238999999999999997653 255678888888887 799999
Q ss_pred EEccCCCCCCCcccHHHHHHHHHH-hcCCEEEEecCCCCCCCCC--ccC--CCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 278 SMSLGGGTSDYYKDSVAIGAFAAM-EKGILVSCSAGNAGPSSYS--LSN--VAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 278 n~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
|||||........+.+..++.++. ++|++||+||||+|....+ +++ .++++|+|||++...........
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~------ 411 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM------ 411 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc------
Confidence 999999764344566777777776 8999999999999986543 455 38999999997543321000000
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
.....+.+++|||+||+.+ +++||||+|||++|
T Consensus 412 ---------------------------------------------~~~~~g~~asFSS~GPt~d--g~~KpDIaAPG~~I 444 (1354)
T 3lxu_X 412 ---------------------------------------------REKLPGNVYTWTSRDPCID--GGQGVTVCAPGGAI 444 (1354)
T ss_dssp ---------------------------------------------------CCCCCCCCSCCSS--SSCCEEEEEEC---
T ss_pred ---------------------------------------------ccCCCCccccccCCCCCcc--CCCcceEEecCceE
Confidence 0011237899999999986 89999999999999
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccccCCccccccc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKA----AHPEWSPAAIRSALMTTAYVSYKNGQKLQDIA 588 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 588 (762)
+++..... ..|..++|||||||||||++|||++ ++|.|++.+||++|++||+++..
T Consensus 445 ~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~--------- 504 (1354)
T 3lxu_X 445 ASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------- 504 (1354)
T ss_dssp -----------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT---------
T ss_pred EEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC---------
Confidence 99755321 2789999999999999999999986 79999999999999999998742
Q ss_pred CCCCCCCCCCCCCCcCccccCCCCeeecCCcchhhhhccccCCC-ccccccccccccccCCCcCCCCCCccCCceeeecc
Q 004301 589 TGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYT-ASQINSLARRKFTCDASKRYSLADFNYPSFAVNIE 667 (762)
Q Consensus 589 ~~~~~~~~~~G~G~vd~~~A~~~~lv~d~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~c~~~~~~~~~~ln~ps~~~~~~ 667 (762)
.+++.||||+||+.+|++..+.|+..+++|+.|+|..+.. ...|. .+ +...+...
T Consensus 505 ----~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIy--lR--------------~~~~~~~~---- 560 (1354)
T 3lxu_X 505 ----VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH--LR--------------QGVQRNSI---- 560 (1354)
T ss_dssp ----SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEE--EC--------------SSCCCSCE----
T ss_pred ----CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceE--Ee--------------ccccCCce----
Confidence 3446899999999999999999999999999999998753 22211 00 00000000
Q ss_pred ccccCCCcceEEEEEEEEecC---C----CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeE
Q 004301 668 TAQSSSGSSVLKYTRSLTNVG---P----PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNS 740 (762)
Q Consensus 668 ~~~~~~~~~~~~~~rtv~n~~---~----~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 740 (762)
. ..++|+-++.|.. . ...-++.+... .+ -|+ -|..|.+ .++.++|.|.+++..-+ .+..
T Consensus 561 -----~--~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t-~~--wv~-~p~~l~l--~~~~r~~~v~vDp~~L~-~G~h 626 (1354)
T 3lxu_X 561 -----D--YNVYIEPIFYNDKEADPKDKFNFNVRLNLIAS-QP--WVQ-CGAFLDL--SYGTRSIAVRVDPTGLQ-PGVH 626 (1354)
T ss_dssp -----E--EEEEEEEEESSCSCSSSTTCSCCCCEEEEEES-ST--TEE-ECSCEEC--TTSCEEEEEEECGGGCC-SEEE
T ss_pred -----E--EEEEEeeeecCcccCChhhccceEEEEEEecC-CC--cee-cccceee--cCCCceEEEEECCCCCC-Ccce
Confidence 0 1223333342211 1 12233444431 12 222 3777766 68899999999988543 3689
Q ss_pred EEEEEEEc-----CceEEEeEEEEE
Q 004301 741 FAHLEWSD-----GKYIVGSPIAIS 760 (762)
Q Consensus 741 ~G~i~~~~-----~~~~v~~P~~v~ 760 (762)
+++|..-| ....-|+||.|.
T Consensus 627 ~~~v~~~D~~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 627 SAVIRAYDTDCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp EEEEEEEESSCTTSCCSEEEEEEEE
T ss_pred eEEEEEEEcCCcccCceEEeeEEEE
Confidence 99998875 358899999775
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-48 Score=404.89 Aligned_cols=240 Identities=32% Similarity=0.414 Sum_probs=201.9
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
.|. ..+|+||+|+|||||||++||+|.++ +...++|..
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 344 37899999999999999999999753 233333331
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCC------
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNV------ 274 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~------ 274 (762)
++.|..||||||||||+|+. .||||+|+|+.+|++++.+ ++.+++++||+|++++++
T Consensus 62 --~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~ 125 (279)
T 2pwa_A 62 --SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPK 125 (279)
T ss_dssp --CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTT
T ss_pred --CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCC
Confidence 25678999999999999872 6999999999999998877 788999999999999887
Q ss_pred -cEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 275 -NVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 275 -dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
+|||||||... .+.+..++.++.++|++||+||||+|.... .+++..|++|+|||++.
T Consensus 126 ~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 185 (279)
T 2pwa_A 126 GVVASLSLGGGY----SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------- 185 (279)
T ss_dssp EEEEEECCCEEC----CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred ccEEEecCCCCC----CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC----------------
Confidence 99999999743 456777778899999999999999998653 45778899999998431
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
.+.+++||++||.+ ||+|||++|
T Consensus 186 -------------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i 208 (279)
T 2pwa_A 186 -------------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDI 208 (279)
T ss_dssp -------------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred -------------------------------------------------CCCcCCcCCCCCcc--------eEEEecCCe
Confidence 12678999999964 999999999
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCC
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKA 592 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 592 (762)
+++++.+ .|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 209 ~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~------------- 261 (279)
T 2pwa_A 209 LSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL------------- 261 (279)
T ss_dssp EEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-------------
T ss_pred EEeecCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-------------
Confidence 9998865 7999999999999999999999999 999999999999999987531
Q ss_pred CCCCCCCCCCcCcc
Q 004301 593 STPFDHGAGHVNPV 606 (762)
Q Consensus 593 ~~~~~~G~G~vd~~ 606 (762)
..+|+|..|+.
T Consensus 262 ---~~~~~g~~n~l 272 (279)
T 2pwa_A 262 ---SNIPFGTVNLL 272 (279)
T ss_dssp ---BSCCTTSCCEE
T ss_pred ---CCCCCCCccEe
Confidence 15678887764
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=399.08 Aligned_cols=236 Identities=33% Similarity=0.429 Sum_probs=199.2
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~----------- 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDN----------- 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTT-----------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCC-----------
Confidence 45799999999999999999999999999753 2333444332
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHh--CCCcE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAID--DNVNV 276 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~dV 276 (762)
..++.|..||||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|+++ .|++|
T Consensus 63 --~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~V 126 (278)
T 2b6n_A 63 --DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAV 126 (278)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEE
T ss_pred --CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeE
Confidence 1235788999999999999862 6999999999999998776 788899999999998 59999
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeE
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (762)
||||||... .+.+..++.++.++|++||+||||+|.... .+++..|++|+|||++.
T Consensus 127 in~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 183 (278)
T 2b6n_A 127 ANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS------------------- 183 (278)
T ss_dssp EEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred EEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC-------------------
Confidence 999999854 356677777899999999999999997654 35778899999998421
Q ss_pred eeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc
Q 004301 356 SLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435 (762)
Q Consensus 356 s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 435 (762)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 004301 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 436 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 515 (762)
.+.++.||++||.. ||+|||++|+++
T Consensus 184 ----------------------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~ 209 (278)
T 2b6n_A 184 ----------------------------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSS 209 (278)
T ss_dssp ----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECc
Confidence 12578899999854 999999999999
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVS 577 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~ 577 (762)
++... ..|..++|||||||||||++|||+|++|+|++.|||++|++||++.
T Consensus 210 ~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 210 WYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp CTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred ccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 87532 2799999999999999999999999999999999999999999875
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=402.26 Aligned_cols=235 Identities=29% Similarity=0.430 Sum_probs=200.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+.+|+||+|||||||||++||+|.++ +...++|..+
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~----------- 62 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALGG----------- 62 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTSS-----------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCCC-----------
Confidence 46899999999999999999999999999753 2333333321
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC--CCcE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD--NVNV 276 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dV 276 (762)
.+.|..||||||||||+|.. .||||+|+|+.+|++++.+ +...++++|++|++++ +++|
T Consensus 63 ----~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~v 124 (276)
T 4dzt_A 63 ----NGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAV 124 (276)
T ss_dssp ----CSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEE
T ss_pred ----CCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeE
Confidence 35678899999999999873 6999999999999998876 7888999999999987 8999
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC-ccCCCCceEEecCCCCCCccceeEEcCCCcEEEeE
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS-LSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (762)
||||||... ...+..++.++.++|+++|+||||+|..... .++..+++|+|||++.
T Consensus 125 in~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 181 (276)
T 4dzt_A 125 ANMSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------------------- 181 (276)
T ss_dssp EEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred EEECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------------------
Confidence 999999743 4567777779999999999999999977544 3778899999998421
Q ss_pred eeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc
Q 004301 356 SLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435 (762)
Q Consensus 356 s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 435 (762)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 004301 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 436 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 515 (762)
.+.+++||++||.. ||+|||++|+++
T Consensus 182 ----------------------------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~ 207 (276)
T 4dzt_A 182 ----------------------------------------------SDARASFSNYGSCV--------DLFAPGASIPSA 207 (276)
T ss_dssp ----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEcc
Confidence 12678999999976 999999999999
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSY 578 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~ 578 (762)
++... ..|..++|||||||+|||++|||+|++|++++++||++|++||++..
T Consensus 208 ~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 208 WYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp CTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred ccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 87642 27999999999999999999999999999999999999999999864
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=418.38 Aligned_cols=278 Identities=23% Similarity=0.251 Sum_probs=201.1
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
.|..+++|+||+|+|||||||++||+|.++- .....++.... ++ ...
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~~---dg----~~f 64 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPEE---DG----TRF 64 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCCC---C--------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccCC---CC----ccc
Confidence 7888999999999999999999999997530 11111111000 00 000
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC------CC
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD------NV 274 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~ 274 (762)
...+.|..||||||||||+|+. .||||+|+|+.+|++++.| ++.+++++||+|++++ ++
T Consensus 65 ~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~ 130 (546)
T 2qtw_B 65 HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGP 130 (546)
T ss_dssp ---CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSC
T ss_pred cCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCC
Confidence 1235688999999999999873 6999999999999998877 7788999999999984 89
Q ss_pred cEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEE
Q 004301 275 NVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353 (762)
Q Consensus 275 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 353 (762)
+|||||||+.. ...+..++.++.++|++||+||||+|.+.. .+++..|++|+|||++.+...
T Consensus 131 ~VINmSlGg~~----s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------- 193 (546)
T 2qtw_B 131 LVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------- 193 (546)
T ss_dssp EEEEECEEEEC----CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-------------
T ss_pred eEEEecCCCCC----cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-------------
Confidence 99999999742 456777788999999999999999997653 457888999999986432210
Q ss_pred eEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC
Q 004301 354 GVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG 433 (762)
Q Consensus 354 g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 433 (762)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEE
Q 004301 434 EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNIL 513 (762)
Q Consensus 434 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 513 (762)
...-..||++|+. |||+|||++|+
T Consensus 194 ------------------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~ 217 (546)
T 2qtw_B 194 ------------------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDII 217 (546)
T ss_dssp ------------------------------------------------CEETTEECCBSTT--------CCEEEECSSEE
T ss_pred ------------------------------------------------ccccCCcCCCCCc--------ceEEecCccEE
Confidence 0000128999984 59999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccc------cc
Q 004301 514 AGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQ------DI 587 (762)
Q Consensus 514 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~------~~ 587 (762)
++++... ..|..++|||||||||||++|||+|++|+|+|+|||++|++||.+..-....+. ..
T Consensus 218 St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tp 286 (546)
T 2qtw_B 218 GASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTP 286 (546)
T ss_dssp EECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSC
T ss_pred eeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCc
Confidence 9987642 279999999999999999999999999999999999999999986432111000 00
Q ss_pred c--CCCCCCCCCCCCCC--cCccccCC
Q 004301 588 A--TGKASTPFDHGAGH--VNPVSALN 610 (762)
Q Consensus 588 ~--~~~~~~~~~~G~G~--vd~~~A~~ 610 (762)
. ...+.....+|+|+ .++..+..
T Consensus 287 N~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 287 NLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp CEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred cchhccCCcccccCCCcchhchhccCC
Confidence 0 01122345678888 77777664
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=425.53 Aligned_cols=292 Identities=15% Similarity=0.135 Sum_probs=212.3
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+++|+||+|||||||||++||+|.++-. . ...++|..+. ..
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~------------~-------------~~~~d~~~~~-------~~ 74 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------P-------------GASFDVNDQD-------PD 74 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------G-------------GGCEETTTTB-------SC
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC------------c-------------cCcccccCCC-------CC
Confidence 34689999999999999999999999999975300 0 0112232221 11
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVI 277 (762)
+.+...+.|.+||||||||||||...++.+ +.||||+|+|+.+|+++ +..+++++|++++++ ++++||
T Consensus 75 p~~~~~~~d~~gHGT~vAGiiaa~~~n~~g--------~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vi 143 (471)
T 1p8j_A 75 PQPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIY 143 (471)
T ss_dssp CCCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEE
T ss_pred CCCccCCCCCCCcHHHHHHHHHeeccCCCC--------CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEE
Confidence 111124568899999999999997544322 37999999999999985 346789999999999 999999
Q ss_pred EEccCCCCCC----CcccHHHHHHHHHHh-----cCCEEEEecCCCCCCCCC----ccCCCCceEEecCCCCCCccceeE
Q 004301 278 SMSLGGGTSD----YYKDSVAIGAFAAME-----KGILVSCSAGNAGPSSYS----LSNVAPWITTVGAGTLDRDFPAFV 344 (762)
Q Consensus 278 n~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgA~~~~~~~~~~~ 344 (762)
|||||..... .....+..++.++.+ +|++||+||||+|..... ....++++|+|||++.
T Consensus 144 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~-------- 215 (471)
T 1p8j_A 144 SASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ-------- 215 (471)
T ss_dssp EECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT--------
T ss_pred EeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC--------
Confidence 9999985421 112234444445543 699999999999976321 1234588999998432
Q ss_pred EcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEE
Q 004301 345 SLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGM 424 (762)
Q Consensus 345 ~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~ 424 (762)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCc
Q 004301 425 VLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPD 504 (762)
Q Consensus 425 i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 504 (762)
.+.+++||++||... ...+|.
T Consensus 216 ---------------------------------------------------------~g~~a~~S~~g~~~~--~~~~~~ 236 (471)
T 1p8j_A 216 ---------------------------------------------------------FGNVPWYSEACSSTL--ATTYSS 236 (471)
T ss_dssp ---------------------------------------------------------TSCCCTTCCBCTTCC--EEEECC
T ss_pred ---------------------------------------------------------CCCcccccCCCCcce--EEeCCC
Confidence 125789999999875 233444
Q ss_pred EEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCccc
Q 004301 505 MIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKL 584 (762)
Q Consensus 505 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~ 584 (762)
..+||..|+++.+.+ ..|..++|||||||||||++|||+|++|+|++++||++|++||++++......
T Consensus 237 ~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~ 304 (471)
T 1p8j_A 237 GNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDW 304 (471)
T ss_dssp CSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCC
T ss_pred CCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCc
Confidence 444567899987643 36999999999999999999999999999999999999999999876432211
Q ss_pred ccccCCCCCCCCCCCCCCcCccccCCCCe
Q 004301 585 QDIATGKASTPFDHGAGHVNPVSALNPGL 613 (762)
Q Consensus 585 ~~~~~~~~~~~~~~G~G~vd~~~A~~~~l 613 (762)
.... ........||||+||+.+|++...
T Consensus 305 ~~n~-~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 305 ATNG-VGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp EECT-TSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred eecC-CCcccCCCCCCEEEcHhHHHHHhh
Confidence 1111 111234599999999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=389.26 Aligned_cols=228 Identities=33% Similarity=0.466 Sum_probs=193.8
Q ss_pred CCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCC
Q 004301 122 LFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKE 201 (762)
Q Consensus 122 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 201 (762)
+|... +|+||+|||||||||++||+|.++ +...++|..+
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------- 63 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAST------------- 63 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSSS-------------
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCCC-------------
Confidence 56555 899999999999999999999753 3333333322
Q ss_pred CCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCC-------
Q 004301 202 SKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDN------- 273 (762)
Q Consensus 202 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g------- 273 (762)
..|.+||||||||||+|+. .||||+|+|+.+|++++.+ ++..++++||+|+++++
T Consensus 64 ---~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 126 (279)
T 3f7m_A 64 ---ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPR 126 (279)
T ss_dssp ---SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTT
T ss_pred ---CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCC
Confidence 2378899999999999862 6999999999999998876 78889999999999976
Q ss_pred CcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCC-ccCCCCceEEecCCCCCCccceeEEcCCCcEE
Q 004301 274 VNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS-LSNVAPWITTVGAGTLDRDFPAFVSLGNGQNY 352 (762)
Q Consensus 274 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 352 (762)
++|||||||.. ..+.+..++.++.++|++||+||||+|..... .++..|++|+|||++.
T Consensus 127 ~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 186 (279)
T 3f7m_A 127 RTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS---------------- 186 (279)
T ss_dssp EEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred CeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC----------------
Confidence 89999999974 34677778889999999999999999977543 4778899999998421
Q ss_pred EeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCC
Q 004301 353 SGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESN 432 (762)
Q Consensus 353 ~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 432 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcE
Q 004301 433 GEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNI 512 (762)
Q Consensus 433 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 512 (762)
.+.+++||++||.. ||+|||++|
T Consensus 187 -------------------------------------------------~~~~~~~S~~g~~~--------di~ApG~~i 209 (279)
T 3f7m_A 187 -------------------------------------------------NDVRSTFSNYGRVV--------DIFAPGTSI 209 (279)
T ss_dssp -------------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred -------------------------------------------------CCCCCCCCCCCCCC--------eEEECCCCe
Confidence 12678999999965 999999999
Q ss_pred EecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 004301 513 LAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSY 578 (762)
Q Consensus 513 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~ 578 (762)
+++++.+ .|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 210 ~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 210 TSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EeecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 9998764 7899999999999999999999999999 99999999999998753
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=419.35 Aligned_cols=283 Identities=19% Similarity=0.206 Sum_probs=211.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+++|+||+|||||||||++||+|.++- +. .+.++|..+.
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~~------------------~~~~d~~~~~---------- 88 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------CA------------------EGSWDFNDNT---------- 88 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------CG------------------GGCEETTTTB----------
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------cc------------------cCcccCCCCC----------
Confidence 458999999999999999999999999998641 00 0122333221
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSM 279 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~ 279 (762)
.......|.+||||||||||||...++.. +.||||+|+|+.+|+++.. ++..++++||+|+++++ +||||
T Consensus 89 ~~~~p~~d~~gHGT~vAGiiaa~~~n~~~--------~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~ 158 (503)
T 2id4_A 89 NLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSC 158 (503)
T ss_dssp SCCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEE
T ss_pred CCCCCCCCCCChHHHHHHHHHhccCCCCC--------cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEe
Confidence 01112357889999999999998643322 3799999999999998643 67888999999999998 99999
Q ss_pred ccCCCCCC----CcccHHHHHHHHHH-----hcCCEEEEecCCCCCCCC--CccC--CCCceEEecCCCCCCccceeEEc
Q 004301 280 SLGGGTSD----YYKDSVAIGAFAAM-----EKGILVSCSAGNAGPSSY--SLSN--VAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 280 SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~~--~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
|||..... .....+..++.++. .+|++||+||||+|.... .++. .++++|+|||++.
T Consensus 159 S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~---------- 228 (503)
T 2id4_A 159 SWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH---------- 228 (503)
T ss_dssp CEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT----------
T ss_pred CCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC----------
Confidence 99975421 12234555665665 479999999999997532 2232 5678999998432
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
.+.+++||++||.. |++
T Consensus 229 -------------------------------------------------------~~~~a~~S~~g~~~--------~~~ 245 (503)
T 2id4_A 229 -------------------------------------------------------KDLHPPYSEGCSAV--------MAV 245 (503)
T ss_dssp -------------------------------------------------------TSCCCTTCCCCTTE--------EEE
T ss_pred -------------------------------------------------------CCCcCCcCCCCCcc--------eEe
Confidence 12568999999987 787
Q ss_pred e----cCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccC-C
Q 004301 507 A----PGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKN-G 581 (762)
Q Consensus 507 A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~-g 581 (762)
| ||..|+++...+ ..|..++|||||||||||++|||+|++|+|++.+||++|++||+++... .
T Consensus 246 a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~ 313 (503)
T 2id4_A 246 TYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNAD 313 (503)
T ss_dssp EECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGG
T ss_pred ecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcC
Confidence 7 899999985432 3799999999999999999999999999999999999999999987643 1
Q ss_pred cccccccCCCCCCCCCCCCCCcCccccCCCCe
Q 004301 582 QKLQDIATGKASTPFDHGAGHVNPVSALNPGL 613 (762)
Q Consensus 582 ~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~l 613 (762)
....... ........||||+||+.+|++...
T Consensus 314 ~~~~~~~-~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 314 GDWRDSA-MGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp GCCEECS-SSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred CCceecC-CCCccCcccCCcEecHHHHHHHHh
Confidence 1111110 112234589999999999998443
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=409.52 Aligned_cols=316 Identities=21% Similarity=0.186 Sum_probs=198.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+++|+||+|||||||||++||||.++- ..+.++|..+..
T Consensus 60 ~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--------------------------~~~~~~~~~~~~--------- 104 (600)
T 3hjr_A 60 WWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--------------------------RPGSKNVVTGSD--------- 104 (600)
T ss_dssp HHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--------------------------CSCCBCTTTSSS---------
T ss_pred HHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--------------------------ccCcceeecCCC---------
Confidence 358999999999999999999999999997530 011222322211
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHH-HHHHhCCCcEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAI-EQAIDDNVNVL 277 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~dVI 277 (762)
+.....|.+||||||||||||.. ++ .| +.||||+|+|+.+|++++.+ +..++++.|+ +++..++++||
T Consensus 105 -dp~p~~~~~gHGThVAGiIAa~~-n~---~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~ 174 (600)
T 3hjr_A 105 -DPTPTDPDTAHGTSVSGIIAAVD-NA---IG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVF 174 (600)
T ss_dssp -CCCCCSTTCCHHHHHHHHHHCCS-SS---SS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEE
T ss_pred -CCCCCCCCCChHHHHHHHHhEeC-CC---CC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEE
Confidence 11123457899999999999863 11 12 37999999999999998776 6777877766 67788899999
Q ss_pred EEccCCCC-CCCcc-----cHHHHHHHHH--HhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 278 SMSLGGGT-SDYYK-----DSVAIGAFAA--MEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 278 n~SlG~~~-~~~~~-----~~~~~a~~~a--~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
|+|||... ..... ..+..++..+ ..+|+++|+||||.+....... .. +.+. +++
T Consensus 175 n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~~-~~~~------------g~~ 236 (600)
T 3hjr_A 175 NQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----YV-LNRT------------GNG 236 (600)
T ss_dssp EECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT-----EE-EEEE------------SSC
T ss_pred ecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc-----cc-cccC------------CCC
Confidence 99999753 11111 1222222222 2579999999999864321000 00 0000 000
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
. ......|... .+......|.+.
T Consensus 237 ~----------------------------~~~~~~~~~d--~~~~~~~~IsVg--------------------------- 259 (600)
T 3hjr_A 237 P----------------------------KLPFENSNLD--PSNSNFWNLVVS--------------------------- 259 (600)
T ss_dssp C----------------------------CCCSSBTTSS--GGGGSSSEEEEE---------------------------
T ss_pred C----------------------------CCCccccccc--CccccCcceEEe---------------------------
Confidence 0 0000001000 000000111110
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.....+.++.||++|+.. +++|||
T Consensus 260 ------------------------------------------------A~~~~g~~a~yS~~G~~v--------~~~apg 283 (600)
T 3hjr_A 260 ------------------------------------------------ALNADGVRSSYSSVGSNI--------FLSATG 283 (600)
T ss_dssp ------------------------------------------------EECTTSSBCTTCCBCTTC--------CEEEEC
T ss_pred ------------------------------------------------eecCCCCEeecccCCcce--------eeccCC
Confidence 012345789999999987 899999
Q ss_pred CcE--------EecccCCCCCC-------------CCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 004301 510 VNI--------LAGWSGAVGPT-------------GLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRS 568 (762)
Q Consensus 510 ~~I--------~sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 568 (762)
..+ .+..++..... ..........|..++|||||||||||++|||+|+||+||++|||+
T Consensus 284 ~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~ 363 (600)
T 3hjr_A 284 GEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRD 363 (600)
T ss_dssp CSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred CCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHH
Confidence 763 22222211000 001112234688999999999999999999999999999999999
Q ss_pred HHHhcccccccCCcccccc--------------------cCCCCCCCCCCCCCCcCccccCCCC
Q 004301 569 ALMTTAYVSYKNGQKLQDI--------------------ATGKASTPFDHGAGHVNPVSALNPG 612 (762)
Q Consensus 569 ~L~~TA~~~~~~g~~~~~~--------------------~~~~~~~~~~~G~G~vd~~~A~~~~ 612 (762)
+|++||++++....|.... ..+.. ....||+|+||+.+|++.+
T Consensus 364 ~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~-~s~~yGfG~vDA~~aV~~A 426 (600)
T 3hjr_A 364 LLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMW-FSPTYGFGLIDVNKALELA 426 (600)
T ss_dssp HHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCE-EBTTTBTCBCCHHHHHHHH
T ss_pred HHHhhCccCCCCCCcccccccccccccccccccCCcccccCCce-EccccCCceecHHHHHHHh
Confidence 9999999998766553210 11111 2347999999999998744
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-26 Score=258.40 Aligned_cols=96 Identities=23% Similarity=0.402 Sum_probs=77.8
Q ss_pred eeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh---CCCcEEEEccCCCCCCC---cccHHHHHHHHHHhcCCEEEEe
Q 004301 237 ARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID---DNVNVLSMSLGGGTSDY---YKDSVAIGAFAAMEKGILVSCS 310 (762)
Q Consensus 237 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~A 310 (762)
+.||||+|+|+.|++. ....+++++|+||++ ++++|||||||...... +...+..++.+|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999973 356789999999998 79999999999864221 2345666777888999999999
Q ss_pred cCCCCCCC--------CCccCCCCceEEecCCCC
Q 004301 311 AGNAGPSS--------YSLSNVAPWITTVGAGTL 336 (762)
Q Consensus 311 AGN~g~~~--------~~~~~~~p~vitVgA~~~ 336 (762)
|||+|... ..+++.+|+|++||+++.
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999653 356678999999999753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=219.99 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=80.9
Q ss_pred eeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCC----CCcccHHHHHHHHHHhcCCEEEEecC
Q 004301 238 RGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNVLSMSLGGGTS----DYYKDSVAIGAFAAMEKGILVSCSAG 312 (762)
Q Consensus 238 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAG 312 (762)
..+||+++++.|++.+..+++..+++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4578999999999987655778899999999998 899999999998531 12335667777788899999999999
Q ss_pred CCCCCCC-------------CccCCCCceEEecCCCC
Q 004301 313 NAGPSSY-------------SLSNVAPWITTVGAGTL 336 (762)
Q Consensus 313 N~g~~~~-------------~~~~~~p~vitVgA~~~ 336 (762)
|+|...+ .+++.+|+|++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 9997642 45678899999999754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=129.28 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=54.6
Q ss_pred HHHHHHHHHHh--CCCcEEEEccCCCCCC---CcccHHHHHHHHHHhcCCEEEEecCCCCCCC----------CCccCCC
Q 004301 261 DILAAIEQAID--DNVNVLSMSLGGGTSD---YYKDSVAIGAFAAMEKGILVSCSAGNAGPSS----------YSLSNVA 325 (762)
Q Consensus 261 ~i~~ai~~a~~--~g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----------~~~~~~~ 325 (762)
.++..+++... +-++|||+|||..... .+.+.+...+.++..+||.|++|+||+|... ..+++..
T Consensus 284 ~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pas~ 363 (544)
T 3edy_A 284 PFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASS 363 (544)
T ss_dssp HHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETTTC
T ss_pred cHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcCCC
Confidence 44554444432 4689999999986422 2234455566678899999999999999743 2466789
Q ss_pred CceEEecCCCC
Q 004301 326 PWITTVGAGTL 336 (762)
Q Consensus 326 p~vitVgA~~~ 336 (762)
|||++||+++.
T Consensus 364 P~VtaVGgT~l 374 (544)
T 3edy_A 364 PYVTTVGGTSF 374 (544)
T ss_dssp TTSEEEEEEEE
T ss_pred CcEEEEeeeec
Confidence 99999999754
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-10 Score=99.93 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceecc
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYEL 105 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 105 (762)
.+++|||.|+++........|.+|+.+++.+...+.+++|+|.+.|+||+++++++++++|+++|+|.+||+|+.++.
T Consensus 36 ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 36 LPGTYVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 578999999998776667788899988887643477999999999999999999999999999999999999998764
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-09 Score=88.13 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceeccC
Q 004301 27 DQRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYELH 106 (762)
Q Consensus 27 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 106 (762)
..+++|||.|+++...+.. ..++++.. +.++.++|.+ |+||+++++++++++|+++|+|.+||+|+.++++
T Consensus 6 ~i~~~YIV~~k~~~~~~~~------~~~~~~~~--g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~ 76 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKSCAK------KEDVISEK--GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRAL 76 (80)
T ss_dssp --CCEEEEEECTTCCSHHH------HHHHHHTT--TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEEC
T ss_pred cCCCCEEEEECCCCChHHH------HHHHHHHc--CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEe
Confidence 4589999999988764321 12233333 6789999998 9999999999999999999999999999999987
Q ss_pred CCC
Q 004301 107 TTR 109 (762)
Q Consensus 107 ~~~ 109 (762)
++.
T Consensus 77 tt~ 79 (80)
T 3cnq_P 77 SAT 79 (80)
T ss_dssp CC-
T ss_pred eec
Confidence 654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-09 Score=93.88 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceecc
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYEL 105 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 105 (762)
.+++|||.||++........+.+++.+.+++...+.++.++|++.|+||+++++++++++|+++|+|.+|++++.++.
T Consensus 46 Ip~~YIV~~K~~~~~~~~~~~~~~l~~~~~~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 46 LPGTYVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 478999999998866555555555555444422367899999999999999999999999999999999999998764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-07 Score=91.85 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCcccCCCCCccc-------cCCcEEEEeCCC-chhhhHHHHHHHcCceEEEEeecCCCCcc--c--cccCcccceEEE
Q 004301 381 NGNLCMMDTLIPEK-------VAGKIVMCDRGV-NARVQKGAVVKAAGGLGMVLANTESNGEE--L--VADAHLLPATAV 448 (762)
Q Consensus 381 ~~~~c~~~~~~~~~-------~~g~iv~~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i 448 (762)
....|.+..+.... .+|||+|++||. |.|.+|..+++++||.++|+||+...+.. . ..+...||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 46789877653222 478999999999 99999999999999999999998532211 1 122357999999
Q ss_pred chhhHHHHHHHHhcCCCcEEEEEecc
Q 004301 449 GQKFGDAIKSYLVSDPKPTVTILFEG 474 (762)
Q Consensus 449 ~~~~~~~l~~~~~~~~~~~~~i~~~~ 474 (762)
+..+|+.|++.+..+...+++|.+..
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999888777776644
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.5e-08 Score=79.53 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=57.4
Q ss_pred CeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEc-ceeeEEEEEcCHHHHHHHhcC--CCeEEEEeCceecc
Q 004301 30 ATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYD-NVIHGFSTQLTREEAESLEQR--PGILSVLPELKYEL 105 (762)
Q Consensus 30 ~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~-~~~~g~s~~~~~~~~~~L~~~--p~V~~v~~~~~~~~ 105 (762)
+.|||.|+++........+..++.+ . +.++.+.|. ..|+||+++++++.+++|+++ |.|.+||+|+.+++
T Consensus 3 ~sYIV~lk~~~~~~~~~~~~~~~~~----~--gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDKIRETKDEVIA----E--GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHH----H--TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh----h--CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 7899999998765555555555443 2 467889994 799999999999999999999 89999999998764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.76 E-value=4.2e-05 Score=60.48 Aligned_cols=62 Identities=15% Similarity=0.307 Sum_probs=51.3
Q ss_pred CeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceec
Q 004301 30 ATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYE 104 (762)
Q Consensus 30 ~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~ 104 (762)
.+|||.|+++... .+.++.. +.++.++|. .+++++++++++.++.|+++|+|++|++|...+
T Consensus 2 ~~~IV~f~~~~~~----------~~~i~~~--gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAKFN----------PHEVLGI--GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGGCC----------GGGGGGG--TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcchh----------HHHHHHC--CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 4899999875221 2234444 799999997 899999999999999999999999999998765
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.016 Score=63.67 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=57.5
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc---ccccCcccceEEEchhhHHHHHHHHh
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE---LVADAHLLPATAVGQKFGDAIKSYLV 461 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~p~~~i~~~~~~~l~~~~~ 461 (762)
.+++||||++.++.|.+.+|..+++++||.|+|++++...... .......+|...++.++++.|+..+.
T Consensus 111 ~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 111 KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 4799999999999999999999999999999999998532111 11134679999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.038 Score=61.05 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=70.0
Q ss_pred CceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCch---------hhhH----HHHHHHcCceEEEEeecCC
Q 004301 365 GKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNA---------RVQK----GAVVKAAGGLGMVLANTES 431 (762)
Q Consensus 365 ~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~---------~~~~----~~~~~~~Ga~g~i~~n~~~ 431 (762)
..+-++|+..+. ..|.. ..+.+++|||||+.++.|. +..+ ..+|+++||+|+|++|+..
T Consensus 105 ~vta~lV~v~~~------~~~~~--~~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~ 176 (444)
T 3iib_A 105 GLSATIVRFDTL------QDLQN--AEAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGT 176 (444)
T ss_dssp CEEEEEEEESSH------HHHHT--SCTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCS
T ss_pred CeEEEEEecCCH------HHHhh--ccccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCC
Confidence 456778876421 12322 2356899999999998773 3344 3579999999999998643
Q ss_pred CCc-------c-ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecc
Q 004301 432 NGE-------E-LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEG 474 (762)
Q Consensus 432 ~~~-------~-~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~ 474 (762)
... . .......+|++.|+.++++.|...+..+...++++....
T Consensus 177 ~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 177 DHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred cccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 211 1 111245799999999999999999987766666665443
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.022 Score=65.45 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=55.3
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc------------------cc----------------c
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE------------------LV----------------A 438 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------------------~~----------------~ 438 (762)
.+++|||||+.+|.|.+.+|..+|+++||+|+|++++...... .. .
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 4799999999999999999999999999999999987532100 00 0
Q ss_pred cCcccceEEEchhhHHHHHHHHh
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLV 461 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~ 461 (762)
....||+..|+..+++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 12368999999999999988654
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.76 E-value=0.043 Score=63.78 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=56.3
Q ss_pred ccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCC----------------------CCcc----cccc------
Q 004301 392 PEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTES----------------------NGEE----LVAD------ 439 (762)
Q Consensus 392 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----------------------~~~~----~~~~------ 439 (762)
..+++|||||+++|.|.+.+|..+|+++||+|+|++++.. .|.. ...|
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 3579999999999999999999999999999999998621 0000 0011
Q ss_pred ----------------CcccceEEEchhhHHHHHHHHhc
Q 004301 440 ----------------AHLLPATAVGQKFGDAIKSYLVS 462 (762)
Q Consensus 440 ----------------~~~~p~~~i~~~~~~~l~~~~~~ 462 (762)
...||+..|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 24789999999999999988753
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.075 Score=47.32 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=52.7
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE-cCceEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS-DGKYIV 753 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~-~~~~~v 753 (762)
.+.+.+++|+|+|+ +..|+... ++ -++++|....+ ++|+++.++|+|.+.. -+.+.+.|.+. ++...+
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~----~~--~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~ 110 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKT----CR--PFSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKV 110 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEEC----CT--TEEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEE
T ss_pred CeEEEEEEEEECCCCCEEEEEec----CC--CeEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEE
Confidence 47888999999999 88887554 33 36678999998 7999999999998862 23456666665 554555
Q ss_pred EeEE
Q 004301 754 GSPI 757 (762)
Q Consensus 754 ~~P~ 757 (762)
.+++
T Consensus 111 ~v~L 114 (122)
T 2ys4_A 111 FVSL 114 (122)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 5543
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.34 E-value=0.27 Score=60.31 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCC
Q 004301 125 TSGSASEVIVGVLDTGVWPESKSFD 149 (762)
Q Consensus 125 ~~~~G~Gv~VgVIDtGid~~Hp~f~ 149 (762)
-.+.|+||+|||+|||||+.+|-|+
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCCccEEEEEeCCCCCCCCcce
Confidence 3678999999999999999999996
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.56 E-value=3.6 Score=37.21 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=59.7
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecC--CCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCC------CCCeEEEEEEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSST--GPGVKISVEPATLSFTQANEKKSYTVTFTVSSMP------SNTNSFAHLEW 746 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~--~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~------~~~~~~G~i~~ 746 (762)
...+.++||+|.|. +.+|+....... ...--++++|..-++ ++|++.++.|++...... ...-++--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 35677889999999 999998743200 111236678999888 899999999999875321 12345666777
Q ss_pred E-cCceEEEeEEEEEe
Q 004301 747 S-DGKYIVGSPIAISW 761 (762)
Q Consensus 747 ~-~~~~~v~~P~~v~~ 761 (762)
. .++....+|+--.|
T Consensus 122 ~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNY 137 (140)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EeecCCcEEEEEeccc
Confidence 6 67777788886655
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.87 E-value=0.86 Score=39.40 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=47.4
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecCCCCCeEEEEEEEE
Q 004301 676 SVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWS 747 (762)
Q Consensus 676 ~~~~~~rtv~n~~~-~~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 747 (762)
...+.+.+++|.|+ +..|+... ...+.+..++++|..-.+ ++|++++++|++.+.. .+ ...=.|.+.
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~-~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~--~g-~f~~~i~v~ 93 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTP-PTSALGACFVFSPKEGII-EPSGVQAIQISFSSII--LG-NFEEEFLVN 93 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECC-CSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC--CE-EEEEEECEE
T ss_pred CEEEEEEEEEECCcceEEEEEec-CCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC--cc-eEEEEEEEE
Confidence 35777889999999 99998732 211123447778999888 7999999999998862 23 333456665
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=0.64 Score=51.08 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=26.8
Q ss_pred cCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCC
Q 004301 480 EPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGA 519 (762)
Q Consensus 480 ~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 519 (762)
...+.++.||++||.. ||+|||++|+++++..
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 3445789999999865 9999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 762 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 1e-43 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-04 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-04 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 4e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-07 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 5e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 7e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-05 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-09 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 4e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-05 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 2e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 8e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.003 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 161 bits (408), Expect = 1e-43
Identities = 90/506 (17%), Positives = 146/506 (28%), Gaps = 99/506 (19%)
Query: 128 SASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFAR 187
A + ++D+G TGTN + +
Sbjct: 20 QAGNRTICIIDSGYDRSHNDL------------NANNVTGTNNSGTG------------- 54
Query: 188 GYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVA 247
P +++ HGTH A T A + + G A +
Sbjct: 55 -------------NWYQPGNNNAHGTHVAGTIAA-IANNEGVVGVMPNQ------NANIH 94
Query: 248 AYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILV 307
KV G S L A ++ +++ G S +L+
Sbjct: 95 IVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGVLLI 154
Query: 308 SCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKL 367
+AGNAG SSYS + +V A + D AF + V +
Sbjct: 155 -AAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQ-----VEISG-------- 200
Query: 368 LPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLA 427
P + G L + + +V +R + A G LA
Sbjct: 201 -PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGA-LA 258
Query: 428 NTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAA 487
NG + + + I ++
Sbjct: 259 ECTVNGTSFSCGNM---------ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVY 309
Query: 488 FSSRGPNSITPELL--KPDMIAPGVNILAGW----SGAVGPTGLATDSRRVSFNIISGTS 541
+S P P L+ D+ P V++ +G + ++ + +GTS
Sbjct: 310 SNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTS 369
Query: 542 MSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAG 601
M+ PHVSG+A L+ + HPE S + +R+AL TA A G G
Sbjct: 370 MATPHVSGVATLVWSYHPECSASQVRAALNATADD------------LSVAGRDNQTGYG 417
Query: 602 HVNPVSALNPGLVYDLTVDDYLGFLC 627
+N V+A YL C
Sbjct: 418 MINAVAAK-----------AYLDESC 432
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 73.2 bits (178), Expect = 6e-14
Identities = 42/251 (16%), Positives = 77/251 (30%), Gaps = 30/251 (11%)
Query: 503 PDMIAPGVNILAGWSG-----AVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAA 557
+ APGV IL+ G G + +++ GTSM+ PHV+G+ A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 558 HPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDL 617
P P IR L TA+ D D G G V +AL L
Sbjct: 398 FPNAKPWQIRKLLENTAF----------DF--NGNGWDHDTGYGLVKLDAALQGPLPTQG 445
Query: 618 TVDDY--------LGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETA 669
V+++ F + + ++ + + ++ + +
Sbjct: 446 GVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSGTYDIFVGGP 505
Query: 670 QSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTF 729
+ S+ ++ G +S + L+ + T+
Sbjct: 506 DHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFNS-----TLQV 560
Query: 730 TVSSMPSNTNS 740
S+ S
Sbjct: 561 KFSTNLSTLKD 571
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/209 (16%), Positives = 51/209 (24%), Gaps = 53/209 (25%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
+IV V+DTGV +G G
Sbjct: 156 IIVAVVDTGVDGTHPDL------------EGQVIAGYRPA-------------------- 183
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
+E GTH A T A G+A A++ +
Sbjct: 184 ---FDEELPAGTDSSYGGSAGTHVAGTIAAK---------KDGKGIVGVAPGAKIMPIVI 231
Query: 252 CWV-------GGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKG 304
G + A I A D V++ S GG Y A
Sbjct: 232 FDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVM 291
Query: 305 ILVSCSAGNAGPSSYSLSNVAPWITTVGA 333
++ + + + Y P + V A
Sbjct: 292 VVSAGNNTSDSHHQY--PAGYPGVIQVAA 318
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 67.6 bits (163), Expect = 1e-12
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
++ APG ++ + W +N ISGTSM+ PHVSGLAA + A +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 562 SPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
S +RS L A G I + G G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIG-----DDYASGFGFAR 308
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 65.7 bits (158), Expect = 5e-12
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 501 LKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPE 560
+KPD++APG IL+ S + + + + GTSM+ P V+G A L+ +
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 561 -----WSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALN 610
P+ +++AL+ A G + G G V +LN
Sbjct: 275 NRGITPKPSLLKAALIAGA------------ADIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 38/236 (16%), Positives = 69/236 (29%), Gaps = 51/236 (21%)
Query: 109 RSPEFLGLDKSANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGT 168
+ + D + + + G IV V DTG+ +++G
Sbjct: 3 VARGIVKADVAQSSYGLYGQG--QIVAVADTGLDTGRNDSSM------HEAFRGKITALY 54
Query: 169 NFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGAS 228
+N + D +GHGTH A +
Sbjct: 55 ALGRTN-----------------------------NANDTNGHGTHVAGS---------- 75
Query: 229 LFGYAAGTARGMATRARVAAYKVCWVGGCF---SSDILAAIEQAIDDNVNVLSMSLGGGT 285
T +GMA +A + + GG S++ QA + + S G
Sbjct: 76 -VLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAV 134
Query: 286 SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFP 341
+ Y + + + +AGN GP+ ++S + G + P
Sbjct: 135 NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRP 190
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 62.2 bits (150), Expect = 4e-11
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 28/108 (25%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
+ D++APGV+I + G + +GTSM+ PHV+G AAL+ + HP W
Sbjct: 195 ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNW 241
Query: 562 SPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSAL 609
+ +RS+L T K F +G G +N +A
Sbjct: 242 TNTQVRSSLENTT---------------TKLGDSFYYGKGLINVQAAA 274
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 51.4 bits (122), Expect = 1e-07
Identities = 47/224 (20%), Positives = 72/224 (32%), Gaps = 52/224 (23%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
V V V+D+G+ G G + S N
Sbjct: 26 VKVAVIDSGIDSSHPDLKVAG--------------GASMVPSETN--------------- 56
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
+D++ HGTH V G + G+A A + A KV
Sbjct: 57 ------------PFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKV 95
Query: 252 CWV-GGCFSSDILAAIEQAIDDNVNVLSMSLGGG-TSDYYKDSVAIGAFAAMEKGILVSC 309
G S I+ IE AI +N++V++MSLGG S K +V + +
Sbjct: 96 LGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGN 155
Query: 310 SAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353
+ S+ P + VGA +F S+G +
Sbjct: 156 EGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVM 199
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 5e-11
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 527 TDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQD 586
TD R+ +GTS S P +G+ AL A+ + ++ ++ T+ ++ N
Sbjct: 246 TDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWAT 305
Query: 587 IATGKASTPFDHGAGHVNPVSALN 610
G+ + +G G ++ + +
Sbjct: 306 NGVGRKVSHS-YGYGLLDAGAMVA 328
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 61.5 bits (148), Expect = 7e-11
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 28/108 (25%)
Query: 502 KPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEW 561
+ +++APG + + + ++ ++GTSM+ PHV+G AAL+ + HP
Sbjct: 194 ELEVMAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNL 240
Query: 562 SPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSAL 609
S + +R+ L +TA + F +G G +N +A
Sbjct: 241 SASQVRNRLSSTA---------------TYLGSSFYYGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 64/306 (20%), Positives = 98/306 (32%), Gaps = 77/306 (25%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
V V VLDTG+ + G G +F A
Sbjct: 26 VKVAVLDTGIQASHPDLNVVG--------------GASFVAGEAY--------------- 56
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
D +GHGTH A T A G+A + A KV
Sbjct: 57 -------------NTDGNGHGTHVAGTVA---------ALDNTTGVLGVAPSVSLYAVKV 94
Query: 252 CW-VGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCS 310
G S I++ IE A + ++V++MS ++ A +G++V +
Sbjct: 95 LNSSGSGSYSGIVSGIEWATTNGMDVINMS---LGGASGSTAMKQAVDNAYARGVVVVAA 151
Query: 311 AGNAGPSSYSLSNVAPW----ITTVGAGTLDRDFPAFVSLGN-------GQNYSGVSLYK 359
AGN+G S + + P + VGA + + +F S+G G
Sbjct: 152 AGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTN 211
Query: 360 GDGLPGK---LLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVM--CDRGVNARVQKGA 414
P V AG A+ L L +V ++ G + KG
Sbjct: 212 TYATLNGTSMASPHV-AGAAALI----LSKHPNLSASQVRNRLSSTATYLGSSFYYGKGL 266
Query: 415 V-VKAA 419
+ V+AA
Sbjct: 267 INVEAA 272
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 60.7 bits (146), Expect = 1e-10
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 36/125 (28%)
Query: 485 VAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSC 544
A+FS G D++APGVN+ + + G ++ ++GTSM+
Sbjct: 180 RASFSQYGAG--------LDIVAPGVNVQSTYPG-------------STYASLNGTSMAT 218
Query: 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVN 604
PHV+G AAL+K +P WS IR+ L TA + +G+G VN
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTAT---------------SLGSTNLYGSGLVN 263
Query: 605 PVSAL 609
+A
Sbjct: 264 AEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVC-WVGGCFSSDI 262
S +D +GHGTH A T A + G+A A + A KV G S I
Sbjct: 55 STQDGNGHGTHVAGTIA---------ALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSI 105
Query: 263 LAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLS 322
+E A ++ ++V ++SL S ++ +A +G+LV ++GN+G S S
Sbjct: 106 AQGLEWAGNNGMHVANLSL---GSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSISYP 162
Query: 323 NVAPWITTVGAGTLDRDFPAFVSLGNG 349
VGA + + +F G G
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAG 189
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 15/77 (19%), Positives = 29/77 (37%)
Query: 534 FNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAS 593
N GTS + P +G+ LL A+P + ++ + +A KN +
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 594 TPFDHGAGHVNPVSALN 610
+G G ++ +
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 533 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTA 574
S ISGTSM+ PHV+GLAA L + +A R + TA
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA 256
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 48/249 (19%), Positives = 73/249 (29%), Gaps = 52/249 (20%)
Query: 132 VIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191
+ V+DTGV D
Sbjct: 33 QEIAVIDTGVDYTHPDLDG----------------------------------------K 52
Query: 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKV 251
+ D P D + HGTH A AA GMA R+ A +
Sbjct: 53 VIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRA 104
Query: 252 C-WVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCS 310
G SDI AI A D V+++SLG ++ A KG +V +
Sbjct: 105 LDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENA---VNYAWNKGSVVVAA 161
Query: 311 AGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPF 370
AGN G S+ + VGA +F + G + + + G +
Sbjct: 162 AGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAY 221
Query: 371 VYAGNASNA 379
+ + ++
Sbjct: 222 MSGTSMASP 230
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 534 FNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAS 593
+ +SGTSM+ PHV+GLAALL + + IR A+ T A +
Sbjct: 219 YAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQT--------------ADKISG 262
Query: 594 TPFDHGAGHVNPVSALN 610
T G +N +A+
Sbjct: 263 TGTYFKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 533 SFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKA 592
++ +SGTSM+ PHV+G+A LL + S + IR+A+ T A +
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENT--------------ADKIS 260
Query: 593 STPFDHGAGHVNPVSAL 609
T G VN A+
Sbjct: 261 GTGTYWAKGRVNAYKAV 277
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDIL 263
DG G E A +A A++A Y F + I
Sbjct: 57 VSVSVDGATNQPTGDPNGPDGEVELDIEVAG----ALAPGAKIAVYFAPNTDAGFLNAIT 112
Query: 264 AAIEQAIDDNVNVLSMSLGGGTSDY---YKDSVAIGAFAAMEKGILVSCSAGNAGP 316
A+ +++S+S GG + ++ A G+ V +AG++G
Sbjct: 113 TAVHDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGS 167
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 40.0 bits (92), Expect = 8e-04
Identities = 22/156 (14%), Positives = 41/156 (26%), Gaps = 15/156 (9%)
Query: 207 DDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFS-SDILAA 265
+ + + + + G A A + + A
Sbjct: 66 SNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQA 116
Query: 266 IEQAIDDN-VNVLSMSLG----GGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYS 320
QA+ DN V+++SLG +D + A +G S S+G+ G +
Sbjct: 117 FNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECN 176
Query: 321 LSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVS 356
T + V S +
Sbjct: 177 NRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGA 212
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 38.0 bits (87), Expect = 0.003
Identities = 31/193 (16%), Positives = 53/193 (27%), Gaps = 8/193 (4%)
Query: 370 FVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429
F A + + A N+ + G + DR +G + G V
Sbjct: 117 FNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECN 176
Query: 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFS 489
+ + P + I + + T ++
Sbjct: 177 NRGYPDGSTYSVSWP-----ASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWA 231
Query: 490 SRGPNSIT---PELLKPDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPH 546
+ G S+ P PG +L S A I GTS++ P
Sbjct: 232 TGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPI 291
Query: 547 VSGLAALLKAAHP 559
GL A L++A+
Sbjct: 292 FVGLWARLQSANS 304
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.83 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.66 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.61 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.51 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.71 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.8e-53 Score=496.84 Aligned_cols=365 Identities=26% Similarity=0.270 Sum_probs=266.3
Q ss_pred CCCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHH----HHHH--hcCCCeEEEEeCc
Q 004301 28 QRATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREE----AESL--EQRPGILSVLPEL 101 (762)
Q Consensus 28 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~----~~~L--~~~p~V~~v~~~~ 101 (762)
.+++|||+|++... .+++++++ +.++++++. .++.+.++++... .+.+ ..+|+|++|||+.
T Consensus 30 ~~~~~iV~~k~~~~----------~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~ 96 (671)
T d1r6va_ 30 TEGKILVGYNDRSE----------VDKIVKAV--NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSY 96 (671)
T ss_dssp CTTEEEEEESSHHH----------HHHHHHHH--TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCB
T ss_pred CCCeEEEEECCccC----------HHHHHHhc--CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcce
Confidence 48899999996532 22334444 466777776 5677788876432 2222 3579999999986
Q ss_pred eeccCCC----C-----------------------CCcccCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCC
Q 004301 102 KYELHTT----R-----------------------SPEFLGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTG 152 (762)
Q Consensus 102 ~~~~~~~----~-----------------------s~~~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g 152 (762)
..++... . ....|+++.+ ..+|....+|+||+|||||||||++||+|.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~- 175 (671)
T d1r6va_ 97 KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ- 175 (671)
T ss_dssp CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTT-
T ss_pred eEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCC-
Confidence 5543210 0 0012444332 22334467899999999999999999999753
Q ss_pred CCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccc
Q 004301 153 LGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGY 232 (762)
Q Consensus 153 ~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~ 232 (762)
++..+++..+.+. ....++.|..||||||||||||+.+.
T Consensus 176 --------------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~VAGiiaa~~~~------- 214 (671)
T d1r6va_ 176 --------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAKKDG------- 214 (671)
T ss_dssp --------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCCCSS-------
T ss_pred --------------------------cccCccccccCCC--------CCCCcCcccCCCCccccceeeeeccc-------
Confidence 1122222221111 01123567889999999999997422
Q ss_pred cCcceeeeccCceEEEEEEEecC------C-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCC
Q 004301 233 AAGTARGMATRARVAAYKVCWVG------G-CFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGI 305 (762)
Q Consensus 233 ~~g~~~GvAP~A~l~~~kv~~~~------g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi 305 (762)
..+.||||+|+|+++|++++. + ....++++||+||+++|++|||||||+.. ....+..++..|.++|+
T Consensus 215 --~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv 289 (671)
T d1r6va_ 215 --KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGV 289 (671)
T ss_dssp --SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTC
T ss_pred --cceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccC
Confidence 123799999999999999642 3 56778999999999999999999999843 34566777779999999
Q ss_pred EEEEecCCCCCCC-CCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCc
Q 004301 306 LVSCSAGNAGPSS-YSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNL 384 (762)
Q Consensus 306 ~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~ 384 (762)
++|+||||++.+. ..+++..|++|+|||++....
T Consensus 290 ~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~--------------------------------------------- 324 (671)
T d1r6va_ 290 VMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG--------------------------------------------- 324 (671)
T ss_dssp EEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT---------------------------------------------
T ss_pred cEEEEEecCCCCccccCCccCCceEEEEEecCCCC---------------------------------------------
Confidence 9999999998765 467788999999998532110
Q ss_pred ccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCC
Q 004301 385 CMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDP 464 (762)
Q Consensus 385 c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~ 464 (762)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEecccCCCCCCC-----CCCCCcccceeeecc
Q 004301 465 KPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWSGAVGPTG-----LATDSRRVSFNIISG 539 (762)
Q Consensus 465 ~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sG 539 (762)
...+++||+|||.. ||+|||++|+++++....... .........|..++|
T Consensus 325 -----------------~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sG 379 (671)
T d1r6va_ 325 -----------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379 (671)
T ss_dssp -----------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEES
T ss_pred -----------------cceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecC
Confidence 11578999999976 999999999999875432211 111123458999999
Q ss_pred ccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCCCee
Q 004301 540 TSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLV 614 (762)
Q Consensus 540 TSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv 614 (762)
||||||||||++|||+|++|+|++.|||++|++||+++.. +..+..||||+||+.+|++..+.
T Consensus 380 TS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG------------NGWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS------------SSCBTTTBTCBCCHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------------CCCCCCcccChhCHHHHhhCcCC
Confidence 9999999999999999999999999999999999998743 34456899999999999986543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=4.3e-50 Score=448.19 Aligned_cols=381 Identities=26% Similarity=0.325 Sum_probs=246.8
Q ss_pred ccCCcCCC--CCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDKSA--NLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~~~--~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.||+..+. .+|. .+|+||+|||||||||++||+|+++ ++..+++...
T Consensus 5 ~wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~-- 53 (435)
T d1v6ca_ 5 PWGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT-- 53 (435)
T ss_dssp CHHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS--
T ss_pred CccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC--
Confidence 35555443 3554 5899999999999999999999753 2222222211
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeecc--CceEEEEEEEecCC-CCHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMAT--RARVAAYKVCWVGG-CFSSDILAAIE 267 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~ 267 (762)
.+..++.|++||||||||||||+..+. | +.|||| +++|+.+|++.... +...++++||+
T Consensus 54 ---------~~~~~~~d~~gHGThvAgiiag~~~~~----g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 115 (435)
T d1v6ca_ 54 ---------GNWYQPGNNNAHGTHVAGTIAAIANNE----G-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115 (435)
T ss_dssp ---------CCTTCCCSSCCHHHHHHHHHHCCCSSS----B-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHH
T ss_pred ---------CCCCCCCCCCCcHHHHHHHHhccCCCC----c-----eEEEecccCceeeeeecccccccchhhhhhhHHH
Confidence 112347789999999999999985321 2 479999 89999999998765 67778999999
Q ss_pred HHHh-CCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEc
Q 004301 268 QAID-DNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 268 ~a~~-~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
++++ +|++|||+|||.... ...+..++..+.++|+++|+||||+|....++++..+++|+|||++.+.........
T Consensus 116 ~a~~~~~~~vin~S~g~~~~---~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~ 192 (435)
T d1v6ca_ 116 TCVNSGGANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (435)
T ss_dssp HHHHTTCCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred HHhhcccceEEecccCCCCC---CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCC
Confidence 9986 599999999998542 345566777889999999999999999998999999999999998776543222112
Q ss_pred CCCcEEE--eEeeecCCCCCCcee------------------eEEEccCCC-CCC--------CCCcc--cCCCCCcccc
Q 004301 347 GNGQNYS--GVSLYKGDGLPGKLL------------------PFVYAGNAS-NAT--------NGNLC--MMDTLIPEKV 395 (762)
Q Consensus 347 ~~g~~~~--g~s~~~~~~~~~~~~------------------p~v~~~~~~-~~~--------~~~~c--~~~~~~~~~~ 395 (762)
+....+. |..++.........+ ..+...... ... ....| ....+...++
T Consensus 193 g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (435)
T d1v6ca_ 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272 (435)
T ss_dssp CSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCC
T ss_pred CCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccc
Confidence 2111110 000000000000000 000000000 000 00000 0111223445
Q ss_pred CCcEEEEeCCCc-----hhhhHHHHHHHcCceEEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEE
Q 004301 396 AGKIVMCDRGVN-----ARVQKGAVVKAAGGLGMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTI 470 (762)
Q Consensus 396 ~g~iv~~~~g~~-----~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 470 (762)
.+++.++.+... ........+...++.+++.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 311 (435)
T d1v6ca_ 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN----------------------------------------- 311 (435)
T ss_dssp TTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-----------------------------------------
T ss_pred ccccceeeccCCccccceeeeeceeecccCCcceEEecc-----------------------------------------
Confidence 566666665322 2344445555555555554433
Q ss_pred EecceeecCcCCCeeecccCCCCCCCC--CCCCCCcEEecCCcEEecccCCC----CCCCCCCCCcccceeeeccccchh
Q 004301 471 LFEGTKVGVEPSPVVAAFSSRGPNSIT--PELLKPDMIAPGVNILAGWSGAV----GPTGLATDSRRVSFNIISGTSMSC 544 (762)
Q Consensus 471 ~~~~~~~~~~~~~~~a~fSs~Gp~~~~--~~~lKPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAa 544 (762)
+.+|.... ....||||.+||..|.++..... .............|..|+||||||
T Consensus 312 -------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 372 (435)
T d1v6ca_ 312 -------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372 (435)
T ss_dssp -------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHH
T ss_pred -------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHH
Confidence 22332211 14678999999988875532110 000000111224799999999999
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCCCCCCCcCccccCCCCeeecCCcchhhh
Q 004301 545 PHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLG 624 (762)
Q Consensus 545 P~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~d~~~~~y~~ 624 (762)
|||||++|||+|+||+|+++|||++||+||+++. .+++++.||+|+||+.+|++ ||.
T Consensus 373 P~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~------------~~~~~~~~G~G~vn~~~A~~-----------~l~ 429 (435)
T d1v6ca_ 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLS------------VAGRDNQTGYGMINAVAAKA-----------YLD 429 (435)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCS------------SSSCBTTTBTCBCCHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccC------------CCCCCCCcccceecHHHHHH-----------HHH
Confidence 9999999999999999999999999999999873 34567799999999999975 888
Q ss_pred hccc
Q 004301 625 FLCA 628 (762)
Q Consensus 625 ~~~~ 628 (762)
..|.
T Consensus 430 ~~~~ 433 (435)
T d1v6ca_ 430 ESCT 433 (435)
T ss_dssp HCTT
T ss_pred hcCC
Confidence 8775
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.4e-48 Score=409.58 Aligned_cols=265 Identities=31% Similarity=0.370 Sum_probs=211.9
Q ss_pred ccCCcCC--CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDKS--ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.|+++.+ +.+|+.+++|+||+|||||||||++||+|.++ ++..++|...
T Consensus 12 qw~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~-- 62 (280)
T d1dbia_ 12 QYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN-- 62 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT--
T ss_pred ccChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC--
Confidence 3566543 56999999999999999999999999999753 3333443322
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
...+.|.++|||||||+|+|...+. +.+.||||+|+|+.+|+++..+ +...++++||+|+
T Consensus 63 -----------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a 123 (280)
T d1dbia_ 63 -----------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYA 123 (280)
T ss_dssp -----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHH
T ss_pred -----------CCccccccccccceeEeeeccccCC--------CceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 1236788999999999999875332 2348999999999999998776 7889999999999
Q ss_pred HhCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCC
Q 004301 270 IDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNG 349 (762)
Q Consensus 270 ~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 349 (762)
+++|++|||||||... ..+....+...+.++|+++|+||||+|......++..+++|+|||.+.
T Consensus 124 ~~~g~~iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T d1dbia_ 124 ADSGAEVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HHTTCSEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HHcCCcEeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-------------
Confidence 9999999999999854 234445566688999999999999999887788888999999998421
Q ss_pred cEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 350 QNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 350 ~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecC
Q 004301 430 ESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPG 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 509 (762)
.+.+++||++||.. |++|||
T Consensus 188 ----------------------------------------------------~~~~a~~S~~g~~~--------d~~apg 207 (280)
T d1dbia_ 188 ----------------------------------------------------YDRLASFSNYGTWV--------DVVAPG 207 (280)
T ss_dssp ----------------------------------------------------TSCBCTTBCCSTTC--------CEEEEC
T ss_pred ----------------------------------------------------CCCcCCcCCCCCcc--------cccCCc
Confidence 12678999999875 999999
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccC
Q 004301 510 VNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIAT 589 (762)
Q Consensus 510 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~ 589 (762)
.+|++..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 208 ~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~---------- 262 (280)
T d1dbia_ 208 VDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG---------- 262 (280)
T ss_dssp SSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT----------
T ss_pred cceeccccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC----------
Confidence 9999988764 8999999999999999999999995 45899999999999987632
Q ss_pred CCCCCCCCCCCCCcCccccCC
Q 004301 590 GKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 590 ~~~~~~~~~G~G~vd~~~A~~ 610 (762)
.+..||+|+||+.+||+
T Consensus 263 ----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 ----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp ----BTTTBSSEECCHHHHHT
T ss_pred ----CCCcCCCCeEcHHHHcC
Confidence 23479999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=6.3e-48 Score=403.76 Aligned_cols=262 Identities=30% Similarity=0.443 Sum_probs=214.5
Q ss_pred cCCcC--CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccc
Q 004301 114 LGLDK--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191 (762)
Q Consensus 114 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~ 191 (762)
||++. +..+|..+++|+||+|||||||||++||+|+ +...++|..+
T Consensus 6 wgl~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~--- 53 (274)
T d1r0re_ 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG--- 53 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT---
T ss_pred cchhhcChHHHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCC---
Confidence 45443 3468999999999999999999999999994 2233344332
Q ss_pred cCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHH
Q 004301 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAI 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 270 (762)
...+.|.++|||||||||++..... .+.|+||+|+|+.+|+++..+ +..+++++|++++.
T Consensus 54 ----------~~~~~d~~gHGT~vAgii~~~~~~~---------~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~ 114 (274)
T d1r0re_ 54 ----------EAYNTDGNGHGTHVAGTVAALDNTT---------GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT 114 (274)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCSSSS---------BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ----------CCCCCCccccccccccccccccccc---------cccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 1235678899999999999875321 137999999999999998877 67889999999999
Q ss_pred hCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC----CccCCCCceEEecCCCCCCccceeEEc
Q 004301 271 DDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY----SLSNVAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 271 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
+++++|+|+|||.... .........++.++++++|+||||+|.... .++...+++|+|||.+.
T Consensus 115 ~~~~~i~n~S~~~~~~---~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~---------- 181 (274)
T d1r0re_ 115 TNGMDVINMSLGGASG---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------- 181 (274)
T ss_dssp HTTCSEEEECEEBSSC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT----------
T ss_pred hcCCceeccccccccc---hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC----------
Confidence 9999999999998543 234445556889999999999999986532 44567788999987421
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
.+.+++||++||. |||+
T Consensus 182 -------------------------------------------------------~~~~~~~s~~g~~--------~di~ 198 (274)
T d1r0re_ 182 -------------------------------------------------------NSNRASFSSVGAE--------LEVM 198 (274)
T ss_dssp -------------------------------------------------------TSCBCTTCCCSTT--------EEEE
T ss_pred -------------------------------------------------------CCCcccccCCCCC--------EEEE
Confidence 1257899999985 4999
Q ss_pred ecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCccccc
Q 004301 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQD 586 (762)
Q Consensus 507 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~ 586 (762)
|||++|+++.+.+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 199 APG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-------- 257 (274)
T d1r0re_ 199 APGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-------- 257 (274)
T ss_dssp EECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------
T ss_pred ecCCCcccccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------
Confidence 9999999998765 8999999999999999999999999999999999999999998763
Q ss_pred ccCCCCCCCCCCCCCCcCccccCC
Q 004301 587 IATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 587 ~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
++..||+|+||+.+|++
T Consensus 258 -------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 -------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -------CHHHHTTCBCCHHHHTC
T ss_pred -------CCCceEcCeecHHHhcC
Confidence 22489999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.6e-47 Score=400.13 Aligned_cols=263 Identities=28% Similarity=0.394 Sum_probs=219.7
Q ss_pred cCCcC--CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccc
Q 004301 114 LGLDK--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEA 191 (762)
Q Consensus 114 ~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~ 191 (762)
|+++. ++.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 13 w~l~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~---------------------------~~~~~~~~~~--- 61 (279)
T d1thma_ 13 YGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------------VVGGWDFVDN--- 61 (279)
T ss_dssp CHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEETTTT---
T ss_pred cChhhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC---------------------------eecccccccc---
Confidence 55543 35689887 899999999999999999999752 4444555433
Q ss_pred cCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHH
Q 004301 192 TLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAI 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 270 (762)
...+.|..+|||||||+|++...+. ..+.|+||+|+|+.+|++...+ +...+++++|+++.
T Consensus 62 ----------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~ 123 (279)
T d1thma_ 62 ----------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAA 123 (279)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHH
T ss_pred ----------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHh
Confidence 1246788999999999999985432 2348999999999999998776 78889999999999
Q ss_pred hCCCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCc
Q 004301 271 DDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQ 350 (762)
Q Consensus 271 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 350 (762)
+.+++|+|+|||... .......+...+.++|+++|+|+||+|......+...|++++|||++.
T Consensus 124 ~~~~~i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~-------------- 186 (279)
T d1thma_ 124 DQGAKVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------------- 186 (279)
T ss_dssp HTTCSEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT--------------
T ss_pred hcCCceeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC--------------
Confidence 999999999999854 334556666788999999999999999988888888999999998432
Q ss_pred EEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecC
Q 004301 351 NYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTE 430 (762)
Q Consensus 351 ~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 430 (762)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCC
Q 004301 431 SNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGV 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 510 (762)
.+.++.||++|++. ||+|||.
T Consensus 187 ---------------------------------------------------~~~~~~~S~~G~~~--------di~Apg~ 207 (279)
T d1thma_ 187 ---------------------------------------------------NDNKSSFSTYGSWV--------DVAAPGS 207 (279)
T ss_dssp ---------------------------------------------------TSCBCTTCCCCTTC--------CEEEECS
T ss_pred ---------------------------------------------------CCCCccccCCCceE--------EEeeeee
Confidence 12678999999976 9999999
Q ss_pred cEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCC
Q 004301 511 NILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATG 590 (762)
Q Consensus 511 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~ 590 (762)
+|+++.+.+ .|..++|||||||+|||++|||+|++| ++.+||++|++||+++.
T Consensus 208 ~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~------------ 260 (279)
T d1thma_ 208 SIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS------------ 260 (279)
T ss_dssp SEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT------------
T ss_pred ccccccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC------------
Confidence 999998875 899999999999999999999999765 79999999999998763
Q ss_pred CCCCCCCCCCCCcCccccCC
Q 004301 591 KASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 591 ~~~~~~~~G~G~vd~~~A~~ 610 (762)
..+..||+|+||+.+|++
T Consensus 261 --g~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 261 --GTGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp --TBTTTBSSEECCHHHHHH
T ss_pred --CCCCcceeeeEcHHHhhC
Confidence 223489999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.2e-47 Score=401.12 Aligned_cols=258 Identities=33% Similarity=0.446 Sum_probs=212.7
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
++.+|.++++|+||+|||||||||++||+|+.. ..+++....
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~~--------- 54 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPSE--------- 54 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTTC---------
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCCC---------
Confidence 356999999999999999999999999999531 222222211
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 277 (762)
.....+..+|||||||||+|.... ....|+||+|+|+.+|+++.++ +...++++||+|+++.+++|+
T Consensus 55 ---~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~ 122 (281)
T d1to2e_ 55 ---TNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVI 122 (281)
T ss_dssp ---CCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEE
T ss_pred ---CCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccc
Confidence 111234579999999999987422 1237999999999999998776 678889999999999999999
Q ss_pred EEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC----CccCCCCceEEecCCCCCCccceeEEcCCCcEEE
Q 004301 278 SMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY----SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS 353 (762)
Q Consensus 278 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 353 (762)
|+|||.. .....+..++..+.++|+++|+||||+|.... ..++..+++|+|||.+.
T Consensus 123 n~S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~----------------- 182 (281)
T d1to2e_ 123 NMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------- 182 (281)
T ss_dssp EECEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------
T ss_pred ccccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC-----------------
Confidence 9999974 33456677777899999999999999987532 35667788999997431
Q ss_pred eEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCC
Q 004301 354 GVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNG 433 (762)
Q Consensus 354 g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 433 (762)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEE
Q 004301 434 EELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNIL 513 (762)
Q Consensus 434 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 513 (762)
.+.++.||++||.. |+.|||.+|+
T Consensus 183 ------------------------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~ 206 (281)
T d1to2e_ 183 ------------------------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQ 206 (281)
T ss_dssp ------------------------------------------------TSCBCTTCCCSTTC--------CEEEECSSEE
T ss_pred ------------------------------------------------CCCCCcccCCCCCc--------cccCCCCCce
Confidence 12678899999976 9999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCC
Q 004301 514 AGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKAS 593 (762)
Q Consensus 514 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 593 (762)
++.+.+ .|..++|||||||+|||++|||+|++|.|++++||++|++||+++..
T Consensus 207 s~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~-------------- 259 (281)
T d1to2e_ 207 STLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD-------------- 259 (281)
T ss_dssp EEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC--------------
T ss_pred eecCCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC--------------
Confidence 998765 79999999999999999999999999999999999999999997631
Q ss_pred CCCCCCCCCcCccccCC
Q 004301 594 TPFDHGAGHVNPVSALN 610 (762)
Q Consensus 594 ~~~~~G~G~vd~~~A~~ 610 (762)
+..||+|+||+.+|++
T Consensus 260 -~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 260 -SFYYGKGLINVQAAAQ 275 (281)
T ss_dssp -HHHHTTCBCCHHHHTS
T ss_pred -CCCcccCcccHHHHHh
Confidence 2378999999999998
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=3.7e-47 Score=396.70 Aligned_cols=256 Identities=33% Similarity=0.438 Sum_probs=214.6
Q ss_pred CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCC
Q 004301 119 SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDE 198 (762)
Q Consensus 119 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 198 (762)
+..+|..+++|+||+||||||||+ +||+|... ..++|..+
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~---------- 52 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG---------- 52 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT----------
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC----------
Confidence 356999999999999999999998 89999531 22233322
Q ss_pred CCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhCCCcEE
Q 004301 199 SKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDDNVNVL 277 (762)
Q Consensus 199 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVI 277 (762)
...+.|.++|||||||||++.... ....|+||+|+|+.+|++...+ ....++.++++++..+++++|
T Consensus 53 ---~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~i 120 (269)
T d1gcia_ 53 ---EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVA 120 (269)
T ss_dssp ---CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEE
T ss_pred ---CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccc
Confidence 123567889999999999987532 2247999999999999998776 677789999999999999999
Q ss_pred EEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCccCCCCceEEecCCCCCCccceeEEcCCCcEEEeEee
Q 004301 278 SMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSL 357 (762)
Q Consensus 278 n~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~s~ 357 (762)
|+|||.... ......+...+.++|+++|+||||+|.....+++..|++|+||+++.
T Consensus 121 n~s~g~~~~---~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 176 (269)
T d1gcia_ 121 NLSLGSPSP---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ--------------------- 176 (269)
T ss_dssp EECCCBSSC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------
T ss_pred ccccccccc---cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc---------------------
Confidence 999997532 23445566688999999999999999888888889999999998432
Q ss_pred ecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcccc
Q 004301 358 YKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEELV 437 (762)
Q Consensus 358 ~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 437 (762)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEeccc
Q 004301 438 ADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAGWS 517 (762)
Q Consensus 438 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 517 (762)
.+.++.||++||.. ||+|||.++.++.+
T Consensus 177 --------------------------------------------~~~~~~~S~~G~~~--------di~Apg~~~~~~~~ 204 (269)
T d1gcia_ 177 --------------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYP 204 (269)
T ss_dssp --------------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEET
T ss_pred --------------------------------------------CCCcccccCCCCCc--------eEEEeeecceeccC
Confidence 12578899999975 99999999999887
Q ss_pred CCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCCCC
Q 004301 518 GAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFD 597 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 597 (762)
.. .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..
T Consensus 205 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~---------------~~~ 256 (269)
T d1gcia_ 205 GS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS---------------TNL 256 (269)
T ss_dssp TT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC---------------HHH
T ss_pred CC-------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC---------------CCC
Confidence 65 89999999999999999999999999999999999999999987632 237
Q ss_pred CCCCCcCccccCC
Q 004301 598 HGAGHVNPVSALN 610 (762)
Q Consensus 598 ~G~G~vd~~~A~~ 610 (762)
||||+||+++|++
T Consensus 257 ~G~G~ln~~~Avk 269 (269)
T d1gcia_ 257 YGSGLVNAEAATR 269 (269)
T ss_dssp HTTCBCCHHHHTC
T ss_pred cccCeEcHHHhcC
Confidence 8999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=4.2e-43 Score=373.35 Aligned_cols=293 Identities=29% Similarity=0.376 Sum_probs=218.0
Q ss_pred ccCCcC--CCCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeecccccc
Q 004301 113 FLGLDK--SANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYE 190 (762)
Q Consensus 113 ~~g~~~--~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~ 190 (762)
.||+++ ++.+|..+++|+||+|+|||||||++||+|.++ +...++|.....
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~ 59 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT 59 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC
Confidence 456554 467999999999999999999999999999753 334444443221
Q ss_pred ccCCCCCCCCCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHH
Q 004301 191 ATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQA 269 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 269 (762)
. ......|..+|||||||||+|...++ ...+.||||+|+|+.+|++...+ +...+++.+++++
T Consensus 60 ~---------~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a 123 (309)
T d2ixta1 60 P---------INNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (309)
T ss_dssp C---------EETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred C---------CCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCccccccccccccc
Confidence 1 11235678899999999999975332 22348999999999999998776 7888899999998
Q ss_pred HhC-----CCcEEEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--CccCCCCceEEecCCCCCCccce
Q 004301 270 IDD-----NVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--SLSNVAPWITTVGAGTLDRDFPA 342 (762)
Q Consensus 270 ~~~-----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~ 342 (762)
++. ...|+|+|++... .......++..+.++|+++|+||||++.... .+++..+++++|++.+.......
T Consensus 124 ~~~~~~~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~ 200 (309)
T d2ixta1 124 ADQATATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGT 200 (309)
T ss_dssp HHHHHHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTE
T ss_pred ccccccccccccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccc
Confidence 875 3578999998743 2344555666889999999999999987654 34456677788776322111000
Q ss_pred eEEcCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCce
Q 004301 343 FVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGL 422 (762)
Q Consensus 343 ~~~~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~ 422 (762)
.
T Consensus 201 ~------------------------------------------------------------------------------- 201 (309)
T d2ixta1 201 Y------------------------------------------------------------------------------- 201 (309)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EEEEeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCC
Q 004301 423 GMVLANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLK 502 (762)
Q Consensus 423 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lK 502 (762)
..........++++|+... ...|
T Consensus 202 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~--~~~~ 224 (309)
T d2ixta1 202 -------------------------------------------------------RVADYSSRGYISTAGDYVI--QEGD 224 (309)
T ss_dssp -------------------------------------------------------EECTTSCCCCTTTTTSSSC--CTTC
T ss_pred -------------------------------------------------------ccccccccccccccccccc--CCCc
Confidence 0001113445677777664 5679
Q ss_pred CcEEecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCc
Q 004301 503 PDMIAPGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQ 582 (762)
Q Consensus 503 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~ 582 (762)
|||+|||.+++++.+.. .|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+.
T Consensus 225 vdi~apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~ 291 (309)
T d2ixta1 225 IEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG 291 (309)
T ss_dssp CCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS
T ss_pred ceeecCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC
Confidence 99999999999998765 79999999999999999999999999999999999999999998764432
Q ss_pred ccccccCCCCCCCCCCCCCCcCc
Q 004301 583 KLQDIATGKASTPFDHGAGHVNP 605 (762)
Q Consensus 583 ~~~~~~~~~~~~~~~~G~G~vd~ 605 (762)
. ......++.+|+|++|+
T Consensus 292 ~-----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 292 Y-----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp T-----TCCSSSBTTTBTCBCCC
T ss_pred c-----CCccCCCcccCCCEecC
Confidence 1 13445667889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1e-42 Score=364.83 Aligned_cols=237 Identities=32% Similarity=0.415 Sum_probs=191.5
Q ss_pred CCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCCC
Q 004301 125 TSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKS 204 (762)
Q Consensus 125 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
...+|+||+|+|||||||++||+|.++ +...+.+. ..
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~~----------------~~ 62 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY----------------YS 62 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS----------------SC
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCCC----------------CC
Confidence 455899999999999999999999753 11111110 12
Q ss_pred CCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHhC-------CCcE
Q 004301 205 PRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAIDD-------NVNV 276 (762)
Q Consensus 205 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-------g~dV 276 (762)
+.|.+||||||||||+|+. .|+||+|+|+.+|++.... ...+++..+++++... +++|
T Consensus 63 ~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 128 (279)
T d2pwaa1 63 SRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVV 128 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred cccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccc
Confidence 5677899999999999863 6999999999999998765 6778889999998764 3459
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-CccCCCCceEEecCCCCCCccceeEEcCCCcEEEeE
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-SLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGV 355 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g~ 355 (762)
+|+|||... .+.+..++.++.++|+++|+||||++.+.. ..+...|++|+|||++.
T Consensus 129 ~n~s~g~~~----~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~------------------- 185 (279)
T d2pwaa1 129 ASLSLGGGY----SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------------------- 185 (279)
T ss_dssp EEECCCEEC----CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred eeccCCCcc----ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee-------------------
Confidence 999999743 345666777889999999999999987654 35667889999998421
Q ss_pred eeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc
Q 004301 356 SLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE 435 (762)
Q Consensus 356 s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 435 (762)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEec
Q 004301 436 LVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILAG 515 (762)
Q Consensus 436 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 515 (762)
.+.+++||++||.. ||+|||.+|+++
T Consensus 186 ----------------------------------------------~g~~~~~S~~G~~~--------dv~APG~~i~s~ 211 (279)
T d2pwaa1 186 ----------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILST 211 (279)
T ss_dssp ----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------cCCCccccCCCCcc--------cccccccccccc
Confidence 22678999999975 999999999999
Q ss_pred ccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCcccccccCCCCCCC
Q 004301 516 WSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTP 595 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 595 (762)
++.+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++.. .
T Consensus 212 ~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~----------------~ 261 (279)
T d2pwaa1 212 WIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD----------------L 261 (279)
T ss_dssp ETTT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC----------------C
T ss_pred ccCC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC----------------C
Confidence 8875 899999999999999999999999999999887775 777887532 2
Q ss_pred CCCCCCCcCc
Q 004301 596 FDHGAGHVNP 605 (762)
Q Consensus 596 ~~~G~G~vd~ 605 (762)
...|+|++|.
T Consensus 262 ~~~g~g~~n~ 271 (279)
T d2pwaa1 262 SNIPFGTVNL 271 (279)
T ss_dssp BSCCTTSCCE
T ss_pred CCCCCCChhh
Confidence 2689999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.4e-40 Score=355.14 Aligned_cols=295 Identities=25% Similarity=0.289 Sum_probs=217.1
Q ss_pred CCCcC-CCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 121 NLFPT-SGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 121 ~~~~~-~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
.+|.. |++|+||+|||||||||++||+|.... . .+.++...+.+..
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~---------------~~~~~~~~~~~~~------------ 58 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A---------------FRGKITALYALGR------------ 58 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T---------------TTTCEEEEEETTT------------
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------c---------------cCCcEEeecCCCC------------
Confidence 46664 999999999999999999999997420 0 1223333333221
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC---CCHHHHHHHHHHHHhCCCcE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG---CFSSDILAAIEQAIDDNVNV 276 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dV 276 (762)
..++.|..||||||||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...+++|
T Consensus 59 --~~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (318)
T d1wmda2 59 --TNNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARI 125 (318)
T ss_dssp --TTCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSE
T ss_pred --CCCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCce
Confidence 123567899999999999997422 27999999999999998765 34445788999999999999
Q ss_pred EEEccCCCCCCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCCCcc--CCCCceEEecCCCCCCccceeEEcCCCcEEEe
Q 004301 277 LSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLS--NVAPWITTVGAGTLDRDFPAFVSLGNGQNYSG 354 (762)
Q Consensus 277 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~g 354 (762)
+|+|||.............+...+.++++++|+|+||.|....... ...+.++++.+.........
T Consensus 126 ~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------ 193 (318)
T d1wmda2 126 HTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG------------ 193 (318)
T ss_dssp EEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC------------
T ss_pred eecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc------------
Confidence 9999998765555555666666778999999999999997765433 34556666655322111000
Q ss_pred EeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCc
Q 004301 355 VSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGE 434 (762)
Q Consensus 355 ~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 434 (762)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEEecCCcEEe
Q 004301 435 ELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMIAPGVNILA 514 (762)
Q Consensus 435 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 514 (762)
........+..||++||... ...|||+.|||.+|++
T Consensus 194 ------------------------------------------~~~~~~~~~~~~s~~G~~~~--~~~~~~~~a~G~~i~~ 229 (318)
T d1wmda2 194 ------------------------------------------SYADNINHVAQFSSRGPTKD--GRIKPDVMAPGTFILS 229 (318)
T ss_dssp ------------------------------------------GGGSCTTSBCTTSCCCCCTT--SCCCCCEEEECSSEEE
T ss_pred ------------------------------------------cccccccccccccccCCCcC--CCcccceeecCceEEe
Confidence 00012235678999999876 6789999999999999
Q ss_pred cccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhC-----CCCCHHHHHHHHHhcccccccCCcccccccC
Q 004301 515 GWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAH-----PEWSPAAIRSALMTTAYVSYKNGQKLQDIAT 589 (762)
Q Consensus 515 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~ 589 (762)
+......... ........|..++|||||||+|||++|||+|++ +.++|.+||++|++||+++.
T Consensus 230 ~~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~----------- 297 (318)
T d1wmda2 230 ARSSLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG----------- 297 (318)
T ss_dssp ECCTTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-----------
T ss_pred ccccccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC-----------
Confidence 8765432111 111122468889999999999999999999974 46889999999999999763
Q ss_pred CCCCCCCCCCCCCcCccccCC
Q 004301 590 GKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 590 ~~~~~~~~~G~G~vd~~~A~~ 610 (762)
...+...||||+||+.+||+
T Consensus 298 -~~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 298 -LGYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -SCSSCTTTTTCBCCHHHHHT
T ss_pred -CCCCCCCeeeceecHHHHhC
Confidence 34556689999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.7e-39 Score=343.09 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=189.3
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
+.+|..+.+|+||+|||||||||++||+|.++- . .+..| .+.... ...
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~--------~----~~~~~-------------~~~~~~-------~~~ 74 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY--------D----PGASF-------------DVNDQD-------PDP 74 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB--------C----GGGCE-------------ETTTTB-------SCC
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc--------c----cCCCc-------------cccCCC-------Ccc
Confidence 458999999999999999999999999997531 0 00000 000000 011
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh-CCCcEEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID-DNVNVLS 278 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIn 278 (762)
.......|..+|||||||||+|...++.. ..|+||+++++.+|+++. ...+.+.++.++++ ++++++|
T Consensus 75 ~~~~~~~~~~gHGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n 143 (334)
T d1p8ja2 75 QPRYTQMNDNRHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYS 143 (334)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEE
T ss_pred ccccccccCccchhhhhhhhhhccccccc--------cccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEe
Confidence 11223557899999999999998644322 379999999999998753 34556677777765 6899999
Q ss_pred EccCCCCC-CCc--------ccHHHHHHHHHHhcCCEEEEecCCCCCCCCCcc----CCCCceEEecCCCCCCccceeEE
Q 004301 279 MSLGGGTS-DYY--------KDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLS----NVAPWITTVGAGTLDRDFPAFVS 345 (762)
Q Consensus 279 ~SlG~~~~-~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVgA~~~~~~~~~~~~ 345 (762)
+|||.... ... ......+...+..+|+++|+||||++....... ...+.+++|++.+
T Consensus 144 ~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~---------- 213 (334)
T d1p8ja2 144 ASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT---------- 213 (334)
T ss_dssp ECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC----------
T ss_pred CCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc----------
Confidence 99997542 111 111233344566799999999999876543221 1223444444321
Q ss_pred cCCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEE
Q 004301 346 LGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMV 425 (762)
Q Consensus 346 ~~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i 425 (762)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcE
Q 004301 426 LANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDM 505 (762)
Q Consensus 426 ~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 505 (762)
..+..+.||++|+... .+.
T Consensus 214 -------------------------------------------------------~~g~~~~~s~~~~~~~------~~~ 232 (334)
T d1p8ja2 214 -------------------------------------------------------QFGNVPWYSEACSSTL------ATT 232 (334)
T ss_dssp -------------------------------------------------------TTSCCCTTCCBCTTCC------EEE
T ss_pred -------------------------------------------------------cCCceeeecccCCccc------ccc
Confidence 1224556666665542 144
Q ss_pred EecCCc-----EEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccC
Q 004301 506 IAPGVN-----ILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKN 580 (762)
Q Consensus 506 ~APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~ 580 (762)
.+||.. +.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~ 299 (334)
T d1p8ja2 233 YSSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLN 299 (334)
T ss_dssp ECCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCC
T ss_pred ccccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 444432 2222222 3788999999999999999999999999999999999999999987544
Q ss_pred CcccccccCCCCCCCCCCCCCCcCccccCC
Q 004301 581 GQKLQDIATGKASTPFDHGAGHVNPVSALN 610 (762)
Q Consensus 581 g~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 610 (762)
........ ........||||+||+.+||+
T Consensus 300 ~~~~~~~~-~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 300 ADDWATNG-VGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp CSCCEECT-TSCEEBTTTBTCBCCHHHHHH
T ss_pred CccccccC-CCcccCCCCcceEeCHHHHHH
Confidence 33322221 122334588999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-39 Score=346.39 Aligned_cols=286 Identities=18% Similarity=0.163 Sum_probs=198.6
Q ss_pred CCCCcCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCC
Q 004301 120 ANLFPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDES 199 (762)
Q Consensus 120 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 199 (762)
..+|..+++|+||+|||||||||++||+|+++-. . -+.++|.+..
T Consensus 36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~------------------~~~~~~~~~~---------- 80 (339)
T d2id4a2 36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------A------------------EGSWDFNDNT---------- 80 (339)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------G------------------GGCEETTTTB----------
T ss_pred HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------c------------------ccccccccCC----------
Confidence 4589999999999999999999999999986310 0 0112222221
Q ss_pred CCCCCCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHhCCCcEEEE
Q 004301 200 KESKSPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSM 279 (762)
Q Consensus 200 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~ 279 (762)
.......+..+|||||||+|+|....+.. +.|+||+|+|+.++++.. .....++..++.++++. .+|+|+
T Consensus 81 ~~~~~~~~~~~HGT~vag~iaa~~~~~~~--------~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~ 150 (339)
T d2id4a2 81 NLPKPRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSC 150 (339)
T ss_dssp SCCCCCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEE
T ss_pred CccCCCcccccccceeeeccccccccccc--------ccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEec
Confidence 11123456789999999999997543322 379999999999998753 35677788888887665 589999
Q ss_pred ccCCCCCC-C---cc----cH-HHHHHHHHHhcCCEEEEecCCCCCCCCCc--cC--CCCceEEecCCCCCCccceeEEc
Q 004301 280 SLGGGTSD-Y---YK----DS-VAIGAFAAMEKGILVSCSAGNAGPSSYSL--SN--VAPWITTVGAGTLDRDFPAFVSL 346 (762)
Q Consensus 280 SlG~~~~~-~---~~----~~-~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVgA~~~~~~~~~~~~~ 346 (762)
|+|..... . .. .. ...+...+..+|+++|+||||++...... +. ..+.+++|+++
T Consensus 151 s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~------------ 218 (339)
T d2id4a2 151 SWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI------------ 218 (339)
T ss_dssp CEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE------------
T ss_pred cCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc------------
Confidence 99974311 1 11 11 22334456679999999999987554321 11 22333333331
Q ss_pred CCCcEEEeEeeecCCCCCCceeeEEEccCCCCCCCCCcccCCCCCccccCCcEEEEeCCCchhhhHHHHHHHcCceEEEE
Q 004301 347 GNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVL 426 (762)
Q Consensus 347 ~~g~~~~g~s~~~~~~~~~~~~p~v~~~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~ 426 (762)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccCcccceEEEchhhHHHHHHHHhcCCCcEEEEEecceeecCcCCCeeecccCCCCCCCCCCCCCCcEE
Q 004301 427 ANTESNGEELVADAHLLPATAVGQKFGDAIKSYLVSDPKPTVTILFEGTKVGVEPSPVVAAFSSRGPNSITPELLKPDMI 506 (762)
Q Consensus 427 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 506 (762)
...+..+.||++|+.. ...++..
T Consensus 219 -----------------------------------------------------~~~g~~~~~s~~~~~~----~~~~~~~ 241 (339)
T d2id4a2 219 -----------------------------------------------------DHKDLHPPYSEGCSAV----MAVTYSS 241 (339)
T ss_dssp -----------------------------------------------------CTTSCCCTTCCCCTTE----EEEEECS
T ss_pred -----------------------------------------------------cccccccccccccCcc----ceeeeee
Confidence 1223556777777654 2345677
Q ss_pred ecCCcEEecccCCCCCCCCCCCCcccceeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccccCCccccc
Q 004301 507 APGVNILAGWSGAVGPTGLATDSRRVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQD 586 (762)
Q Consensus 507 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~ 586 (762)
+||..+.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|++||.+++........
T Consensus 242 ~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~ 309 (339)
T d2id4a2 242 GSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWR 309 (339)
T ss_dssp BTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCE
T ss_pred ccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccc
Confidence 7899988776543 3688999999999999999999999999999999999999999987643322211
Q ss_pred ccCCCCCCCCCCCCCCcCccccCCC
Q 004301 587 IATGKASTPFDHGAGHVNPVSALNP 611 (762)
Q Consensus 587 ~~~~~~~~~~~~G~G~vd~~~A~~~ 611 (762)
...........||||+||+.+||+.
T Consensus 310 ~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 310 DSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp ECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred ccCCCCCcCCCccchhhCHHHHHHH
Confidence 1112334455799999999999973
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=5.8e-30 Score=276.49 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=105.7
Q ss_pred cCCCCCCCcEEEEEcccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCceeeeeeeccccccccCCCCCCCCCCC
Q 004301 124 PTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESK 203 (762)
Q Consensus 124 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
..+++|+||+|||||||||++||+|.+. |+. .+..+ ...
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~---~~~~~------------------------------~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS---LGVSA------------------------------PQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH---TTCCC------------------------------CCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh---cCCCC------------------------------CCC
Confidence 3689999999999999999999999641 100 00000 001
Q ss_pred CCCCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCCCCHHHHHHHHHHHHh---CCCcEEEEc
Q 004301 204 SPRDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGGCFSSDILAAIEQAID---DNVNVLSMS 280 (762)
Q Consensus 204 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIn~S 280 (762)
.+.|.++|+|||+|++++...... .....+.||||+|+|+.+|+... ....+.++++++. ++++|||+|
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S 128 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSIS 128 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEEC
T ss_pred ceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecc
Confidence 123455777777777655421100 01122479999999999999743 3445666666654 589999999
Q ss_pred cCCCCCC---CcccHHHHHHHHHHhcCCEEEEecCCCCCCCC--------CccCCCCceEEecCC
Q 004301 281 LGGGTSD---YYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY--------SLSNVAPWITTVGAG 334 (762)
Q Consensus 281 lG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~~p~vitVgA~ 334 (762)
||..... .....+......+..+|+++|+|+||+|.... ..+...+++++|++.
T Consensus 129 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 193 (357)
T d1t1ga_ 129 WGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGT 193 (357)
T ss_dssp CCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEE
T ss_pred cccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeee
Confidence 9975322 12244556666788899999999999985432 223356777887764
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=7.4e-29 Score=269.42 Aligned_cols=121 Identities=18% Similarity=0.128 Sum_probs=94.5
Q ss_pred CCCCCChhhHHHhhcccCCCCCccccccCcceeeeccCceEEEEEEEecCC-CCHHHHHHHHHHHHh-CCCcEEEEccCC
Q 004301 206 RDDDGHGTHTASTAAGSVVEGASLFGYAAGTARGMATRARVAAYKVCWVGG-CFSSDILAAIEQAID-DNVNVLSMSLGG 283 (762)
Q Consensus 206 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~SlG~ 283 (762)
.+..+||||+++++.+... ...+.||||+|+|+.+|++.+.+ ....+++++|+||++ ++++|||+|||.
T Consensus 65 ~~~~~~~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~ 135 (369)
T d1ga6a_ 65 SSNGDYSDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGW 135 (369)
T ss_dssp CTTSCCCBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCE
T ss_pred CCCCCCCCCCCcceeeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccc
Confidence 3466899999999876531 11247999999999999998876 677889999999986 579999999997
Q ss_pred CC----CCCcccHHHHHHHHHHhcCCEEEEecCCCCCCCC-------------CccCCCCceEEecCCC
Q 004301 284 GT----SDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSY-------------SLSNVAPWITTVGAGT 335 (762)
Q Consensus 284 ~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVgA~~ 335 (762)
.. .....+.+..++.+|.++|++||+||||+|.... ..+...|++++|+++.
T Consensus 136 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 136 CEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp EHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred cccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 43 2334456677777889999999999999986432 2345678999998753
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=4.6e-09 Score=82.94 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEcceeeEEEEEcCHHHHHHHhcCCCeEEEEeCceecc
Q 004301 29 RATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYDNVIHGFSTQLTREEAESLEQRPGILSVLPELKYEL 105 (762)
Q Consensus 29 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 105 (762)
+++|||.|+++........+.++ +++. +.++.++|. .++||+++|++++++.|+++|+|.+||+|+.++.
T Consensus 1 e~~YIV~fK~~~~~~~~~~~~~~----v~~~--gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMSSAKKKDV----ISQK--GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp CEEEEEEECSSSSCCSHHHHHHH----HHTT--TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCcEEEEECCCCChHHHHHHHHH----HHHc--CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 36899999998765444333322 3333 789999998 7999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.66 E-value=2.1e-08 Score=79.32 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCeEEEEeCCCCCCcchhhhHHHHHHhhcccCCCCcEEEEEc-ceeeEEEEEcCHHHHHHHhcCCC--eEEEEeCce
Q 004301 29 RATYIIHMAKSEMPASFEHHTHWYESSLKSVSDSAEILYTYD-NVIHGFSTQLTREEAESLEQRPG--ILSVLPELK 102 (762)
Q Consensus 29 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~y~-~~~~g~s~~~~~~~~~~L~~~p~--V~~v~~~~~ 102 (762)
.++|||.||++........+..++.. . +..+.+.|. ..|+||+++++++.++.|+++|+ |.+||+|..
T Consensus 2 aG~YIVvlK~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~V 72 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDKIRETKDEVIA----E--GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (72)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH----H--TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred CccEEEEECCCCCHHHHHHHHHHHHh----c--CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCCC
Confidence 47999999998765444444444432 2 456677777 68999999999999999999665 999999863
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.61 E-value=0.012 Score=48.68 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=62.7
Q ss_pred ccCCceeeeccccccCCCcceEEEEEEEEecCC-C-ceEEEEEeecCCCCeEEEEEcCeEEEeecCeeeEEEEEEEEecC
Q 004301 657 FNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGP-P-GTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSM 734 (762)
Q Consensus 657 ln~ps~~~~~~~~~~~~~~~~~~~~rtv~n~~~-~-~~y~~~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 734 (762)
+..|++++.-+ +..+++.+|+|.+. . ..-++.+.. |+|-+++.... .+ ++|++++++++|+++..
T Consensus 6 ~t~p~~~v~pG--------~~~~~~vtVtN~g~~~~~~~~~~~~~--P~GW~v~~~~~--~L-~pG~s~~~~~~Vt~p~~ 72 (103)
T d1w8oa1 6 FTIPDVALEPG--------QQVTVPVAVTNQSGIAVPKPSLQLDA--SPDWQVQGSVE--PL-MPGRQAKGQVTITVPAG 72 (103)
T ss_dssp EECCCEEECTT--------CEEEEEEEEECCSSSCBSSCEEEEEC--CTTSEEEEEEC--CB-CTTCEEEEEEEEECCTT
T ss_pred ccCcceeeCCC--------CeEEEEEEEEeCCCCceeeeeEEEcC--CCCccccCcce--ee-CCCCcEEEEEEEECCCC
Confidence 44577776543 58999999999998 4 334566677 99988765444 45 79999999999999866
Q ss_pred CCCCeEEEEEEEEcCceEEEeEEEE
Q 004301 735 PSNTNSFAHLEWSDGKYIVGSPIAI 759 (762)
Q Consensus 735 ~~~~~~~G~i~~~~~~~~v~~P~~v 759 (762)
..-+.|.=.+..+++.......|-+
T Consensus 73 a~~G~Y~i~~~a~~~~~~~s~t~tv 97 (103)
T d1w8oa1 73 TTPGRYRVGATLRTSAGNASTTFTV 97 (103)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEEEEEeCCcceEEEEEE
Confidence 5544444456666655555544443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0015 Score=60.36 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=54.9
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeecCCCCcc-------------ccc---------------------
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANTESNGEE-------------LVA--------------------- 438 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-------------~~~--------------------- 438 (762)
.+++|||+|+++|.+.+.+|..+|++.||.|+|+|.+...... ...
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~ 138 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 138 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccC
Confidence 5789999999999999999999999999999999986432100 000
Q ss_pred cCcccceEEEchhhHHHHHHHHh
Q 004301 439 DAHLLPATAVGQKFGDAIKSYLV 461 (762)
Q Consensus 439 ~~~~~p~~~i~~~~~~~l~~~~~ 461 (762)
.-..||+.-|+..+++.|+..++
T Consensus 139 ~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 139 GLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCcCCeeeCCHHHHHHHHHHcC
Confidence 12347899999999999998764
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0074 Score=57.45 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=35.3
Q ss_pred cccCCcEEEEeCCCchhhhHHHHHHHcCceEEEEeec
Q 004301 393 EKVAGKIVMCDRGVNARVQKGAVVKAAGGLGMVLANT 429 (762)
Q Consensus 393 ~~~~g~iv~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 429 (762)
-+++|||+|+++|.+.+.+|..+|++.||+|+|+|++
T Consensus 77 i~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 77 INCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence 4799999999999999999999999999999999986
|