Citrus Sinensis ID: 004304

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760--
MDDSKSSDEDADIQRGEILKSVSDSDEDSFVERVEFNDGKHFRKAIFGYGVDSGDRKDSYEEGDDDDSDEGEDDDDDGDEGEDDDDDGDEGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV
cccccccccHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEccccHHHHHHccccccEEEEcccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEcEEEEEcccccEEEccccccccEEEEEEEEEccccccEEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEEcEEEEEEccccHHHHHcccccEEEEccccHHHHHHHHHcccccccccccccccccEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccccccccccccccccccccccEEEEcccccEEEEHEccccccccccHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccHcccHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHcccccccccccHHcccccEEEEcccccccccccccccccccccccccHHHHHccccHHHHHHHHHHccccccccccccHHHHHccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEccccccEEEEEEccccHHHHHcccccccEEEEcccccccccEEEEEEEEEccccccHHccccccEEEEEcccEccccEEEEEccccccccEEEccccccEEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEEEccccHHHEEEEEEccccHHHHcccEEEccccccccEEEEEcccEEEEccccHHHHHHHccccccccccccccccccccEEEcHHHHHHHcHEEEEEEcccccccccccccHHccccccccccccccHHHHHHHcccccccccccccccEEccccccccccccHHHHHHcccccccccccccccccHcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccc
mddskssdedadiqrgeilksvsdsdedsfvervefndgkhfrkaifgygvdsgdrkdsyeegddddsdegedddddgdegedddddgdegedennhnvdnhlssgteerednddMENELKLTKSSLRRCANLIQLVYgkststsetLSKEvqdsiegeesdedeffkpkvegnklregldsgivntddcskiksyedLKSWKQEEVYESIRDrfvtgdwskaaqrnqvskgksedddsddavygdyedletgekqegqrkdnsgcegienedESAVEERRLKKLSLRAKfdvqydgsespeeemnekdgakfhcgqpneiglVDQMKEEIEFRKQMNIaelndldevtrlelegfrtgtylrmeihdvpfemveyfdpchpvlvggiglgeqNVGYMQVRLKRHRWWHkkvlksrdpiivsigwrrfqtipvyaiedrsgrhrmlkytpehmhclatfwgplappqtgvVAVQNLSNNQASFRIAATAVVLEFNHevkikkkiklvgypckifkkTALIKDMFTSDLEVAQCegkevrtvsgirGQVKKAAKEeignqpkrkggqpregiarctfedrilMSDIVFMRgwadveiprfynplttalqprDKIWQGMKTVAELRREHnlsipvnknslykpigrtprkfnplvipkslqaalpfeskpkdipgrkrpllenrravvmepherKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV
mddskssdedadiqrgeilksvsdsdedsfvervefndgkhfrkaifgygvdsgdrkdsyeegddddsdegedddddgdeGEDDDddgdegedennhnvdnhlssgteeredndDMENELKLTKSSLRRCANLIQLvygkststsetlskevqdsiegeesdedeffkpkvegnklregldsgivntddcskiksyedlkswkqeeVYESIRdrfvtgdwskaaqrnqvskgksedddsddaVYGDYedletgekqegqrkdnsgcegienedesaVEERRLKklslrakfdvqydgsespeeemnekdgakfhcGQPNEIGLVDQMKEEIEFRKQMNiaelndldevtrLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRhrwwhkkvlksrdpiivsigwrrfqtipvyaiedrsGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFnhevkikkkiklvgypcKIFKKTALIKDMFTSDLEVAQCegkevrtvsgirgqvkkaakeeignqpkrkggqpregiaRCTFEDRILMSDIVFMRGWADVEIPRFYNplttalqprdkIWQGMKTVAELRrehnlsipvnknslykpiGRTPRKFNPLVIPKSLqaalpfeskpkdipgrkrpLLENRRavvmepherkvHVLFQQLQLIRNEKMKkrklkqqhrkkeieaerakdeqltrkrqreerreryreqdklmkkirrhsev
MDDSKSSDEDADIQRGEILKsvsdsdedsfverveFNDGKHFRKAIFGYGVDSGDRKDSYeegddddsdegedddddgdegedddddgdegedeNNHNVDNHLSSGTeerednddmeneLKLTKSSLRRCANLIQLVYGkststsetlskeVQdsiegeesdedeFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQvskgksedddsddavygdyedLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEkmkkrklkqqhrkkEIEAERAKDeqltrkrqreerreryreqDKLMKKIRRHSEV
********************************RVEFNDGKHFRKAIFGYGV****************************************************************************RRCANLIQLVYG********************************************IVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDW****************************************************************************************************IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVS****************************IARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIP************************************RKVHVLFQQLQLI**********************************************************
***********************************************************************************************************************************NLIQLVYGKST***********************************************CSKIKSYEDLKSWKQEEVYESIRDRF****************************************************************************************EMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRD*********AELRREHNLSI*******************PLVIPKSLQAA****************************HERKVHVLFQQLQLIR*********************************************************
************IQRGEILKSVSDSDEDSFVERVEFNDGKHFRKAIFGYGVDSGD***************************************NNHNVDNHLS*************NELKLTKSSLRRCANLIQLVYGKS************************FFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWS*******************DAVYGDYEDL******************************RLKKLSLRAKFDVQ**************DGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRG**********************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKM***************************************QDKL**********
*****************************FVERVEFNDGKHFRKAIFGY***************************************************************NDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLS**************DEFFKPKVE**********GIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWS*********************VYGDY*DLET***********************************RAKFDVQYDG**********************EIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEE*************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDI**RKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDDSKSSDEDADIQRGEILKSVSDSDEDSFVERVEFNDGKHFRKAIFGYGVDSGDRKDSYEEGDDDDSDEGEDDDDDGDEGEDDDDDGDEGEDENNHNVDNHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYGKSTSTSETLSKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKLMKKIRRHSEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query762 2.2.26 [Sep-21-2011]
Q146921282 Ribosome biogenesis prote yes no 0.644 0.382 0.472 1e-132
O946531121 Ribosome biogenesis prote yes no 0.862 0.586 0.369 1e-115
Q089651183 Ribosome biogenesis prote yes no 0.783 0.504 0.352 2e-99
A8MV67101 Putative BMS1-like protei no no 0.131 0.990 0.643 3e-37
A8MXU9101 Putative BMS1-like protei no no 0.131 0.990 0.623 4e-36
A8MTN0101 Putative BMS1-like protei no no 0.131 0.990 0.613 4e-35
Q5XGY1815 Pre-rRNA-processing prote N/A no 0.314 0.294 0.249 2e-19
Q5SWD9803 Pre-rRNA-processing prote no no 0.342 0.325 0.235 6e-19
Q9VP47814 Pre-rRNA-processing prote no no 0.292 0.273 0.257 4e-15
Q2NL82804 Pre-rRNA-processing prote no no 0.228 0.216 0.257 3e-14
>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/546 (47%), Positives = 340/546 (62%), Gaps = 55/546 (10%)

Query: 189  DCSKIKSYEDLKSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYE 248
            DCS+    E    W  EEV  SIRD FVTG W         +K  +ED++    +YGD+E
Sbjct: 733  DCSRF-LVEAPHDWDLEEVMNSIRDCFVTGKWE---DDKDAAKVLAEDEE----LYGDFE 784

Query: 249  DLETGEKQEGQRKDNSGCEGIE---------NEDESAVEERRLKKLSLRAKFDVQYDGSE 299
            DLETG+  +G+   N+  E IE         +E+ESA ++   KK  L+  FD +YD  E
Sbjct: 785  DLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDAEYDEGE 844

Query: 300  SPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTG 359
            S                        D +K E++ + Q+N AE  D D+  R++ EGFR G
Sbjct: 845  S---------------------TYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPG 883

Query: 360  TYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPI 419
             Y+R+EI +VP E V+ FDP +P+++GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPI
Sbjct: 884  MYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPI 942

Query: 420  IVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNN 479
            I S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FWGP+ P  TG +A+Q++S  
Sbjct: 943  IFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGI 1002

Query: 480  QASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVR 539
               FRIAAT VVL+ +  +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG  +R
Sbjct: 1003 MPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIR 1062

Query: 540  TVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRF 599
            TVSGIRGQ+KKA +               EG  R +FED++LMSDIVFMR W  V IP F
Sbjct: 1063 TVSGIRGQIKKALRAP-------------EGAFRASFEDKLLMSDIVFMRTWYPVSIPAF 1109

Query: 600  YNPLTTALQPRDK--IWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKS 657
            YNP+T+ L+P  +   W GM+T  +LR  H + +  NK+SLYKPI R  + FN L IPK+
Sbjct: 1110 YNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKA 1169

Query: 658  LQAALPFESKPK-DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQ 716
            LQ ALPF++KPK      K P    R AV+ EPHERK+  L   L  + ++KMKK K ++
Sbjct: 1170 LQKALPFKNKPKTQAKAGKVPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQR 1229

Query: 717  QHRKKE 722
                KE
Sbjct: 1230 HLHNKE 1235
May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)
>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2 Back     alignment and function description
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1 Back     alignment and function description
>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5 SV=1 Back     alignment and function description
>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5 SV=1 Back     alignment and function description
>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5 SV=1 Back     alignment and function description
>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 Back     alignment and function description
>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1 Back     alignment and function description
>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query762
224133372 1181 predicted protein [Populus trichocarpa] 0.933 0.602 0.644 0.0
359477919 1139 PREDICTED: ribosome biogenesis protein B 0.879 0.588 0.623 0.0
298205174 1305 unnamed protein product [Vitis vinifera] 0.853 0.498 0.656 0.0
356544500 1181 PREDICTED: ribosome biogenesis protein B 0.922 0.595 0.600 0.0
357473081 1200 Ribosome biogenesis protein BMS1-like pr 0.950 0.603 0.575 0.0
357473083 1175 Ribosome biogenesis protein BMS1-like pr 0.950 0.616 0.575 0.0
356541129 1176 PREDICTED: ribosome biogenesis protein B 0.767 0.497 0.665 0.0
449444194 1198 PREDICTED: ribosome biogenesis protein B 0.897 0.570 0.615 0.0
297848950 1148 hypothetical protein ARALYDRAFT_470695 [ 0.929 0.616 0.560 0.0
15222176 1147 BMS1 and NUC121 domain-containing protei 0.917 0.609 0.554 0.0
>gi|224133372|ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/783 (64%), Positives = 586/783 (74%), Gaps = 72/783 (9%)

Query: 1    MDDSKSSDEDADIQRGEILKSVSD-SDE-------------DSFVERVEFNDGKHFRKAI 46
            +D S+S+DED   Q+  ++   SD SDE             D   E+VEF+ G+  RKA+
Sbjct: 450  LDGSESTDEDEAAQKDAVVNGESDGSDEEHGTAAKQKADPQDRMKEQVEFHGGRLRRKAM 509

Query: 47   FGYGVDSGDRKDSYEEGDDDDSDEG-EDDDDDGDEGEDDDDDGDEGEDENNHNVDNHLSS 105
            FG  +D  D KD          DEG E DDD GD+   D                   S 
Sbjct: 510  FGNDIDDKDLKDC---------DEGSESDDDVGDQSLSD-------------------SE 541

Query: 106  GTEEREDNDDMENELKLTKSSLRRC-----ANLIQLVYGKSTSTSETLSKEVQDSIEGEE 160
             +EE  D +DM N  K  +S + R       NL+Q VYGKS ST      E QD  E EE
Sbjct: 542  FSEEDRDEEDMGNISKWKESLVDRTFSKQNNNLMQRVYGKSASTP---INEKQDGSEDEE 598

Query: 161  SDEDEFFKPKVEGNK-LREGLDSGIVNTDDCSKIKSYEDLKSWKQEEVYESIRDRFVTGD 219
            SD DEFFK K EGNK LREG D   V+ D+CSK  +Y DLK+WK EE+YESIRDRFVTGD
Sbjct: 599  SD-DEFFKLKGEGNKKLREGFDVENVDADECSKFTNYSDLKNWKDEEIYESIRDRFVTGD 657

Query: 220  WSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGCEGIENEDESAVEE 279
            WSKAAQRN++     EDD+  D+VYGD+EDLETGEK    +K+ SG   ++ EDE   E+
Sbjct: 658  WSKAAQRNKLPTANDEDDE--DSVYGDFEDLETGEKHGNHQKEESGNVSMQKEDELE-EQ 714

Query: 280  RRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNI 339
            R+LKKL+L               EE++EK GAKFH GQ NE G +D++KEEIE RKQ NI
Sbjct: 715  RKLKKLAL--------------HEEVDEKHGAKFHRGQANESGYIDKLKEEIEIRKQRNI 760

Query: 340  AELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQ 399
            AELNDLDE TRLE+EGF+TGTYLR+E+HDVPFEMVE+FDPC P+LVGGIGLGE++VGYMQ
Sbjct: 761  AELNDLDEETRLEIEGFQTGTYLRLELHDVPFEMVEHFDPCDPILVGGIGLGEEHVGYMQ 820

Query: 400  VRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATF 459
             RLKRHRW H+KVLK++DP+I SIGWRR+QT PVYAIEDR+GRHRMLKYTPEHMHCLATF
Sbjct: 821  ARLKRHRW-HRKVLKTKDPVIFSIGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLATF 879

Query: 460  WGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTAL 519
            WGPLAPP TGVVAVQNL+NNQASFRI ATAVVLEFNH  K+ KK+KLVG+PCKIFKKTAL
Sbjct: 880  WGPLAPPNTGVVAVQNLANNQASFRITATAVVLEFNHAAKMVKKVKLVGHPCKIFKKTAL 939

Query: 520  IKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDR 579
            I +MFTSDLEVA+ EG  VRTVSGIRGQVKKAAK+EIGNQP +KGG PREGIARCTFEDR
Sbjct: 940  IMNMFTSDLEVARFEGAAVRTVSGIRGQVKKAAKDEIGNQPTKKGGAPREGIARCTFEDR 999

Query: 580  ILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLY 639
            ILMSDIVF+R W  VE P FYNPLTTALQPR+K WQGMKTVAELRREHNL IPVNK+SLY
Sbjct: 1000 ILMSDIVFLRAWTQVEAPCFYNPLTTALQPRNKTWQGMKTVAELRREHNLPIPVNKDSLY 1059

Query: 640  KPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQ 699
            +PI RTP+KFNPLVIPKSLQA LPFESKPKDIP + R  LE RRAVVMEP ERKVH L Q
Sbjct: 1060 RPIERTPKKFNPLVIPKSLQATLPFESKPKDIP-KGRATLERRRAVVMEPDERKVHALVQ 1118

Query: 700  QLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRH 759
            QL+LI N+KM+KRKLK+   + ++EAE+AKDE+L+RKR+REERRERYR Q+KL KK RR+
Sbjct: 1119 QLRLITNDKMRKRKLKKDQERNKLEAEKAKDEELSRKRKREERRERYRVQEKLKKKARRN 1178

Query: 760  SEV 762
            S+ 
Sbjct: 1179 SDA 1181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477919|ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|298205174|emb|CBI17233.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544500|ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357473081|ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507880|gb|AES89022.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357473083|ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507881|gb|AES89023.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356541129|ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449444194|ref|XP_004139860.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297848950|ref|XP_002892356.1| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata] gi|297338198|gb|EFH68615.1| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222176|ref|NP_172157.1| BMS1 and NUC121 domain-containing protein [Arabidopsis thaliana] gi|332189907|gb|AEE28028.1| BMS1 and NUC121 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query762
TAIR|locus:20330501147 AT1G06720 [Arabidopsis thalian 0.653 0.434 0.598 1.9e-179
ZFIN|ZDB-GENE-060720-21221 bms1l "BMS1-like, ribosome ass 0.644 0.402 0.448 1.1e-112
UNIPROTKB|Q146921282 BMS1 "Ribosome biogenesis prot 0.562 0.334 0.487 1.1e-110
UNIPROTKB|E1BPP21290 BMS1 "Uncharacterized protein" 0.562 0.332 0.489 8e-110
UNIPROTKB|F1PKN21287 BMS1 "Uncharacterized protein" 0.566 0.335 0.479 5.6e-109
UNIPROTKB|F1NH691304 BMS1 "Uncharacterized protein" 0.568 0.332 0.484 1.9e-108
ASPGD|ASPL00000059951179 AN6334 [Emericella nidulans (t 0.649 0.419 0.421 5.4e-102
FB|FBgn00366861159 CG7728 [Drosophila melanogaste 0.713 0.469 0.392 3.1e-99
DICTYBASE|DDB_G02878911205 bms1l "BMS1-like ribosome biog 0.682 0.431 0.396 5.8e-98
POMBASE|SPBC31E1.061121 bms1 "GTP binding protein Bms1 0.578 0.393 0.439 1.8e-97
TAIR|locus:2033050 AT1G06720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1520 (540.1 bits), Expect = 1.9e-179, Sum P(2) = 1.9e-179
 Identities = 306/511 (59%), Positives = 364/511 (71%)

Query:   252 TGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKF--DVQYDGSESPEE--EMNE 307
             TG+  +   +D +   G E ED+    +    +   + K   +++   +E+ +E  E+ E
Sbjct:   643 TGDWSKAALRDKNLGTGGEGEDDELYGDFEDLETGEKHKSHENLESGANENEDEDAEVVE 702

Query:   308 KDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIH 367
             +DG      Q +E G  D++KE  E  KQ N  E NDLDE TR+EL GFRTGTYLR+EIH
Sbjct:   703 RDGNNPR-SQADEPGYADKLKEAQEITKQRNELEYNDLDEETRIELAGFRTGTYLRLEIH 761

Query:   368 DVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRR 427
             +VP+EMVE+FDPCHP+LVGGIG GE NVGYMQ RLK+HRW HKKVLK+RDPIIVSIGWRR
Sbjct:   762 NVPYEMVEFFDPCHPILVGGIGFGEDNVGYMQARLKKHRW-HKKVLKTRDPIIVSIGWRR 820

Query:   428 FQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAA 487
             +QTIPV+AIEDR+GRHRMLKYTPEHMHCLA+FWGPL PP TG VA QNLSNNQA FRI A
Sbjct:   821 YQTIPVFAIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQNLSNNQAGFRITA 880

Query:   488 TAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQ 547
             T+VVLEFNH+ +I KKIKLVG PCKI KKTA IKDMFTSDLE+A+ EG  VRTVSGIRGQ
Sbjct:   881 TSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIARFEGSSVRTVSGIRGQ 940

Query:   548 VKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTAL 607
             VKKA K  + N+ +       EGIARCTFED+I MSD+VF+R W  VE+P+FYNPLTTAL
Sbjct:   941 VKKAGKNMLDNKAE-------EGIARCTFEDQIHMSDMVFLRAWTTVEVPQFYNPLTTAL 993

Query:   608 QPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESK 667
             QPRDK W GMKT  ELRRE N+ IPVNK+SLYK I R  +KFNPL IPK L+  LPF SK
Sbjct:   994 QPRDKTWNGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFNPLQIPKRLEKDLPFMSK 1053

Query:   668 PKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEXXXXXXXXXXXXXXEIEAER 727
             PK+IP RKRP LE++RAV+MEP ERK H + QQ QL+++               E EAE+
Sbjct:  1054 PKNIPKRKRPSLEDKRAVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAEK 1113

Query:   728 AKDXXXXXXXXXXXXXXXXXXXDKLMKKIRR 758
             AK+                   DK  KK RR
Sbjct:  1114 AKNEEINKKRRREERRDRYREEDKQKKKTRR 1144
GO:0003924 "GTPase activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0042254 "ribosome biogenesis" evidence=IEA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
ZFIN|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000005995 AN6334 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0036686 CG7728 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287891 bms1l "BMS1-like ribosome biogenesis protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC31E1.06 bms1 "GTP binding protein Bms1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00640202
hypothetical protein (1181 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VII2715
hypothetical protein (380 aa)
   •• • 0.909
gw1.X.2964.1
hypothetical protein (516 aa)
   •• • 0.896
eugene3.00160311
hypothetical protein (691 aa)
   •• • 0.894
estExt_fgenesh4_pm.C_280108
hypothetical protein (960 aa)
   •• • 0.884
gw1.I.4832.1
hypothetical protein (422 aa)
   •• • 0.853
gw1.III.139.1
hypothetical protein (784 aa)
   •• • 0.785
estExt_fgenesh4_pg.C_LG_V1631
hypothetical protein (799 aa)
   •• ••0.763
eugene3.00090493
hypothetical protein (840 aa)
   •   •0.752
estExt_Genewise1_v1.C_LG_IV0024
SubName- Full=Putative uncharacterized protein; (604 aa)
   •  • 0.748
estExt_fgenesh4_pm.C_1070023
hypothetical protein (554 aa)
   •  • 0.747

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query762
COG51921077 COG5192, BMS1, GTP-binding protein required for 40 1e-111
pfam04950293 pfam04950, DUF663, Protein of unknown function (DU 3e-82
COG5177769 COG5177, COG5177, Uncharacterized conserved protei 4e-12
COG3343175 COG3343, RpoE, DNA-directed RNA polymerase, delta 1e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 2e-04
pfam04147809 pfam04147, Nop14, Nop14-like family 3e-04
PRK12678672 PRK12678, PRK12678, transcription termination fact 6e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 6e-04
pfam10446449 pfam10446, DUF2457, Protein of unknown function (D 8e-04
COG4547620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.001
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 0.001
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.002
pfam04147809 pfam04147, Nop14, Nop14-like family 0.002
pfam03344715 pfam03344, Daxx, Daxx Family 0.002
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 0.002
pfam06524314 pfam06524, NOA36, NOA36 protein 0.002
pfam1225376 pfam12253, CAF1A, Chromatin assembly factor 1 subu 0.002
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.004
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  362 bits (929), Expect = e-111
 Identities = 199/733 (27%), Positives = 343/733 (46%), Gaps = 70/733 (9%)

Query: 37   NDGKHFRKAIFGYGVDSGDRKDSYEEGDDDDSDEGEDDDDDGDEGEDDDDDGDEGEDENN 96
            N G+  R+   G  +     ++  +E   DDSD    D+++  +        +  ++ +N
Sbjct: 404  NVGRKTRRQPTGKAIAEETSRE--DELSFDDSDVSTSDENEDVDFTGKKGAINNEDESDN 461

Query: 97   HNVDNHLSSGTEEREDNDDME----NELKLTKSSLRRCANLIQLVYGKSTSTSETL---- 148
              V     S  +E E N   +    ++L  ++S  R   N+ ++ Y +S S  E +    
Sbjct: 462  EEVAFDSDSQFDESEGNLRWKEGLASKLAYSQSGKRG-RNIQKIFYDESLSPEECIEEYK 520

Query: 149  --SKEVQDSIEGEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSKIKSYEDLKSWKQEE 206
              S +  +S    + + ++FF      N+      S   N +   + +  E  K W    
Sbjct: 521  GESAKSSESDLVVQDEPEDFFDVSKVANE------SISSNHEKLMESEFEELKKKWSS-- 572

Query: 207  VYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNSGC 266
                ++ RF       + +  +      E  + +D    +       E+  G        
Sbjct: 573  -LAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENE 631

Query: 267  EGIENED-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVD 325
            E  +  D E+  EE   KK  LR  F+++       E    EK           ++    
Sbjct: 632  ESADEVDYETEREENARKKEELRGNFELE-------ERGDPEK----------KDVDWYT 674

Query: 326  QMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLV 385
            + K +IE + ++N +E   +   +R+ +EG+R G Y+R+ +  VP E V+ F+  +P+++
Sbjct: 675  EEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVL 734

Query: 386  GGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRM 445
            GG+   E+ +G +Q R+KRHRW HKK+LK+ DP+I S+GWRRFQ+IPVY+++D   R+RM
Sbjct: 735  GGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQSIPVYSMKDSRTRNRM 793

Query: 446  LKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIK 505
            LKYTPEHMHC  +F+GP+ PP TG  AVQ+   +   FR+ A   + + N + K+ KK+K
Sbjct: 794  LKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEKGD---FRVLALGTITDVNGDAKLVKKLK 850

Query: 506  LVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGG 565
            LVGYP +I + T  ++DMFTSDLEV + EG  ++ VSG+RGQVK                
Sbjct: 851  LVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGP-------------- 896

Query: 566  QPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRR 625
              + G  R  FE ++LMSDI+ +R +  VE+ R + P+   L      W+G++ + E+R 
Sbjct: 897  HGKNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLGK----WRGLRRLHEIRE 952

Query: 626  EHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAV 685
               L+      +                +P+ +++ LP + +   +          RR  
Sbjct: 953  SLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIAVVS--------RRIE 1004

Query: 686  VMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRER 745
            +  P E +     +   +    K ++ K + +  ++  E E  K E+   +R R+   + 
Sbjct: 1005 LPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDN 1064

Query: 746  YREQDKLMKKIRR 758
            Y+E  K   K +R
Sbjct: 1065 YKEMAKKRLKKKR 1077

Length = 1077
>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663) Back     alignment and domain information
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription] Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein Back     alignment and domain information
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 762
COG51921077 BMS1 GTP-binding protein required for 40S ribosome 100.0
PF04950297 DUF663: Protein of unknown function (DUF663); Inte 100.0
KOG1980754 consensus Uncharacterized conserved protein [Funct 100.0
COG5177769 Uncharacterized conserved protein [Function unknow 100.0
KOG1951115 consensus GTP-binding protein AARP2 involved in 40 99.56
KOG0461522 consensus Selenocysteine-specific elongation facto 96.68
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 93.46
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.51
KOG3130514 consensus Uncharacterized conserved protein [Funct 83.97
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 82.87
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-130  Score=1068.21  Aligned_cols=567  Identities=32%  Similarity=0.572  Sum_probs=496.7

Q ss_pred             hhhhhhhhhhhccCCCCchhhhcccc-cC-CC-C--CC-CCCCCCCccccccCcccccCCC-CCCCCCcccccccccccc
Q 004304          127 LRRCANLIQLVYGKSTSTSETLSKEV-QD-SI-E--GE-ESDEDEFFKPKVEGNKLREGLD-SGIVNTDDCSKIKSYEDL  199 (762)
Q Consensus       127 ~~R~~~l~~lvY~~~~~~~~~~~~~~-~~-~~-~--~~-~~~~~~fFk~~~~~~~~~e~~~-~~~~~~~d~~~~~~~~~~  199 (762)
                      ..|..|+.+++|+++++|++|+.+|+ ++ .+ +  .. ++++++||++++...+. +..+ ....+ -..+.|     .
T Consensus       495 ~kr~~ni~ki~y~e~lspeeci~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~-~s~~~ek~~~-~~fe~L-----~  567 (1077)
T COG5192         495 GKRGRNIQKIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES-ISSNHEKLME-SEFEEL-----K  567 (1077)
T ss_pred             ccccccccceeccccCCHHHHHHHhccccccccccccccccCchhhhhhhhhcccc-cccchhhhch-hHHHHH-----H
Confidence            45567999999999999999999998 21 11 1  11 26677899976655544 1111 11222 113344     6


Q ss_pred             cCCCchHhHHHHhhhhccCccchhhhhccccCCCCCCCCCCccccCCCccccccccccCCCCCCC-CC----CCCCc-c-
Q 004304          200 KSWKQEEVYESIRDRFVTGDWSKAAQRNQVSKGKSEDDDSDDAVYGDYEDLETGEKQEGQRKDNS-GC----EGIEN-E-  272 (762)
Q Consensus       200 ~~W~~e~~~~~ir~~Fvtg~w~~~~~~~q~~~~~~~~~~~d~e~~GdFEDLEtge~~~~~~~~~~-~~----~~~~~-~-  272 (762)
                      .+|+   .++.|+.||.++.......       ..++.- .|...|+||||+..|.....+.+++ ++    +..+. . 
T Consensus       568 kkw~---s~~~lk~RF~~~~~lds~e-------g~EEl~-qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~~e~~~e  636 (1077)
T COG5192         568 KKWS---SLAQLKSRFQKDATLDSIE-------GEEELI-QDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADE  636 (1077)
T ss_pred             HHHh---hHHHHHHHhhccccccccc-------chhhhh-hchhccCcccccccccccccchhhccCCcccccchhhccc
Confidence            7895   4899999999987653111       111111 3445689999998765432211111 11    01111 1 


Q ss_pred             -c-HHHHHHHHHHHHHHhhhhhhccCCCCCcchhhccccccccCCCCCCcchhHHHHHHHHHHHHHhhHHHhcCCCHHHH
Q 004304          273 -D-ESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTR  350 (762)
Q Consensus       273 -~-e~~~~k~~~kK~~lk~~F~~e~d~~~~~~~~~~~~~~~~~~~~e~~~~~~yd~~K~~~~~q~~~N~~ef~~ld~~~R  350 (762)
                       + +.+++.||+||++|+.+|+.+..+                 +++..+.+||+.+|+.+++|+.||+.||++|++++|
T Consensus       637 ~~~e~ErE~na~kKE~lr~~Fe~eer~-----------------d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r  699 (1077)
T COG5192         637 VDYETEREENARKKEELRGNFELEERG-----------------DPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESR  699 (1077)
T ss_pred             cchHHHhhhhhhhhhhhhcceeehhcc-----------------CccccccchHHHHHHHHHHHHhhhhhhhhhcCCcce
Confidence             2 788999999999999999998753                 344456789999999999999999999999999999


Q ss_pred             HHhcCCCCCcEEEEEEecCchhhhhccCCCCceeEeecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeee
Q 004304          351 LELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT  430 (762)
Q Consensus       351 ~~~eG~~~G~YVrI~i~~VP~e~ve~fdp~~PlIvgGLl~~E~k~gvv~~riKRhrw~~~kiLKSkDpLi~siGwRRFqt  430 (762)
                      +.++||++|+||||+|+.||.+||.+|+|.+|||+|||||.|.++|+||+||+|||| |++|||++||||||+|||||||
T Consensus       700 ~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTNdPlifS~GWRRFQs  778 (1077)
T COG5192         700 VVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQS  778 (1077)
T ss_pred             eEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccCCCeEEEechhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeeeeeecCCCceeEEeecCCCceEEEEEEeecCCCCccEEEEEeccCCCCCeEEEEEEEeeeccCcceEEEeEEEecee
Q 004304          431 IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYP  510 (762)
Q Consensus       431 ~PIyS~~d~n~R~R~lKYtpehm~c~AtfyGPi~~p~tgvlafq~~~~~~~~frI~ATG~Vl~~D~~~~IvKKlkLtG~P  510 (762)
                      +||||+.|+.+|+|||||||+||||++|||||+++|||||||+|+.   .++|||+|+|+|.++|.+..|||||||+|||
T Consensus       779 iPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse---~g~frv~a~g~i~dv~~~~~lvkklklvg~p  855 (1077)
T COG5192         779 IPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSE---KGDFRVLALGTITDVNGDAKLVKKLKLVGYP  855 (1077)
T ss_pred             cceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEec---CCceEEEEeeeeEeccccHHHHhhhhhccCc
Confidence            9999999999999999999999999999999999999999999984   4579999999999999999999999999999


Q ss_pred             eEEeecceEEeccCCChhhhccccCCeeeeccCccceeeccccccccCCCCCCCCCCCCceeEeeeccccccccEEEEec
Q 004304          511 CKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRG  590 (762)
Q Consensus       511 ~KI~KkTAfIK~MF~s~lEV~~Fkga~LrTksGiRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~sDiVfLrl  590 (762)
                      ++|++||||||+||+|.+||++|+||+|+||||+||+||.|+|+              +|++||.|+++|+|||||.||+
T Consensus       856 ~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~k--------------~g~yra~fe~kmlmsdii~lr~  921 (1077)
T COG5192         856 KQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGK--------------NGEYRAVFEGKMLMSDIITLRC  921 (1077)
T ss_pred             HHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccCC--------------CccchheeccchhhhheeeEEe
Confidence            99999999999999999999999999999999999999999998              9999999999999999999999


Q ss_pred             ceecccCcccccccccCCCCCccccccchHHHHHHHcCCCCCCCCCCCCccccCCCCCCCCCCCCHhHHhhCCCCCCCCC
Q 004304          591 WADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD  670 (762)
Q Consensus       591 wkrV~p~~fynpvt~~l~~~~~~W~gmrt~~elR~e~~i~~p~~~dS~Yk~ieR~~r~fnpl~iPk~Lq~~LPfkskpk~  670 (762)
                      |+||.+++||+||+|||+    .|+|+|.++|||...||.+|.+++|.|..+||..++||.|.+|+.+|+.|||+     
T Consensus       922 ~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~~lp~~-----  992 (1077)
T COG5192         922 FVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLD-----  992 (1077)
T ss_pred             eeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHhhCCcc-----
Confidence            999999999999999996    69999999999999999999999999999999999999999999999999998     


Q ss_pred             CCCCCCccccccccccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004304          671 IPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD  750 (762)
Q Consensus       671 ~~~~~~~~~~~~ravv~~~~Ekk~~~l~q~l~ti~~~k~~krk~k~~~~~~~~~k~~~k~e~~~~~~~ke~~k~~~r~~g  750 (762)
                         +++.+++.+|+||+.|.|++....+|..-++.+.|..+++++++-.++++.++.+|.|++|.+|.|+.++++|.+.|
T Consensus       993 ---kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~ke~~~s~~r~k~~~i~k~e~er~qr~r~~~~d~~~e~~ 1069 (1077)
T COG5192         993 ---KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069 (1077)
T ss_pred             ---hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence               45668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 004304          751 KLMKKIRR  758 (762)
Q Consensus       751 k~~~~~~~  758 (762)
                      |++-+|.+
T Consensus      1070 kkr~kk~r 1077 (1077)
T COG5192        1070 KKRLKKKR 1077 (1077)
T ss_pred             hhhhhccC
Confidence            99877653

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus Back     alignment and domain information
>KOG1980 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5177 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3130 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query762
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-06
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 8e-05
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 77/612 (12%), Positives = 157/612 (25%), Gaps = 185/612 (30%)

Query: 12  DIQRGEILKSVSD---SDEDSFVERVEFNDGKHFRKAIFGYGVDSGDRKDSYEEGDDDDS 68
           D + GE      D     ED+FV+  +  D +   K+I        +        D    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHIIMSKDAVSG 63

Query: 69  ---------DEGE-------DDDDDGD----------EGEDDDDDGDEGEDENN--HNVD 100
                     + E       ++    +          E            ++ +  +N +
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 101 NHLSSGTEEREDNDDMENELKLTKSSLRRCANLIQLVYG-----KSTSTSETL-SKEVQD 154
              +     R        +L+     LR   N++  + G     K+    +   S +VQ 
Sbjct: 124 QVFAKYNVSRLQ---PYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 155 SIE--------GEESDEDEFFKPKVEGNKLREGLDSGIVNTDDCSK--IKSYEDLKSWK- 203
            ++           +  +   +      KL   +D    +  D S         +++   
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 204 ---QEEVYES----IRDRFVTGDWSKAAQRNQVSKG-----K----SEDDDSDDAVYGDY 247
              + + YE+    + +  V    +      +         K    +      D +    
Sbjct: 236 RLLKSKPYENCLLVLLN--V---QNA-----KAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 248 EDLETGEKQEGQRKDNSGCEGIENEDESAVEERRLKKLSLRAKFDVQYDGSESPEEEMNE 307
               + +              +   DE           SL  K+ +     + P E    
Sbjct: 286 TTHISLDHHS---------MTLT-PDEV---------KSLLLKY-LDCRPQDLPREV--- 322

Query: 308 KDGAKFHCGQPNEIG-LVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEI 366
                        I   +       +  K +N  +L  + E +   LE            
Sbjct: 323 LTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------------ 367

Query: 367 HDVPFEMVEYFDPCH--------PVLVGGI---GLGEQNVGYMQVRLKRHRWWHKKVLKS 415
              P E  + FD           P ++  +    + + +V  +  +L      HK  L  
Sbjct: 368 ---PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL------HKYSLVE 418

Query: 416 RDPIIVSIGWRRFQTIPVYAI--------EDRSGRHRML--KYTPEHMHCLATFWGPLAP 465
           + P        +  TI + +I        E+    HR +   Y              + P
Sbjct: 419 KQP--------KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS---DDLIPP 467

Query: 466 PQTGVV--------AVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKT 517
                                    FR     V L+F     +++KI+           +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLDFRF---LEQKIRHDSTAW---NAS 517

Query: 518 ALIKDMFTSDLE 529
             I +     L+
Sbjct: 518 GSILNTLQ-QLK 528
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query762
1wb1_A482 Translation elongation factor SELB; selenocysteine 99.81
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
Probab=99.81  E-value=1.3e-20  Score=206.92  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=132.1

Q ss_pred             cccccccCCcEEEEEeeeeeeeeeeeee---ecCCCceeEEeecCCC--ceEEEEEEeecCCCCccEEEEEeccCCCCCe
Q 004304          409 HKKVLKSRDPIIVSIGWRRFQTIPVYAI---EDRSGRHRMLKYTPEH--MHCLATFWGPLAPPQTGVVAVQNLSNNQASF  483 (762)
Q Consensus       409 ~~kiLKSkDpLi~siGwRRFqt~PIyS~---~d~n~R~R~lKYtpeh--m~c~AtfyGPi~~p~tgvlafq~~~~~~~~f  483 (762)
                      ++.+|++..+++|+||..+-.+....-.   -+.++.+..-+++..+  ..|...+-.|+++.+-+-+++....+.....
T Consensus       303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~  382 (482)
T 1wb1_A          303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL  382 (482)
T ss_dssp             CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred             CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCc
Confidence            3579999999999999999877664433   2333333333444443  4677888899988765555565522212346


Q ss_pred             EEEEEEEeeeccCcceEEEeEEEeceeeE-----EeecceEEeccCCChhhhccccCCeeeeccCc-cceeecccccccc
Q 004304          484 RIAATAVVLEFNHEVKIKKKIKLVGYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI-RGQVKKAAKEEIG  557 (762)
Q Consensus       484 rI~ATG~Vl~~D~~~~IvKKlkLtG~P~K-----I~KkTAfIK~MF~s~lEV~~Fkga~LrTksGi-RG~IKkaLgt~~~  557 (762)
                      |++|.|+|+.+.+    +++++|...+.|     ++++||+||+||++..+|+||.|..|+|++|. +|+|+.++|+   
T Consensus       383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~---  455 (482)
T 1wb1_A          383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT---  455 (482)
T ss_dssp             CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT---
T ss_pred             eEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCC---
Confidence            8999999999877    455666555555     78899999999999999999999999999999 9999999999   


Q ss_pred             CCCCCCCCCCCCceeEeeeccccccccEEEEeccee
Q 004304          558 NQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD  593 (762)
Q Consensus       558 ~~~~~~~~~~phG~fRatFedkIl~sDiVfLrlwkr  593 (762)
                                 +|+|||+|+++|.+||+|||++|+|
T Consensus       456 -----------~G~~~~~f~~~~~~~d~v~~~~~~~  480 (482)
T 1wb1_A          456 -----------KGLLTAEFSGNVENRDKVILNRLRR  480 (482)
T ss_dssp             -----------TTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred             -----------CceEEEEecCCCCCCCeeeeehhhc
Confidence                       9999999999999999999999997

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query762
d1wb1a279 Elongation factor SelB, domains 2 and 4 {Methanoco 94.88
>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.88  E-value=0.011  Score=48.91  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             eeEEeecceEEeccCCChhhhccccCCeeeeccC-ccceeeccccccccCCCCCCCCCCCCceeEeeeccccccccEEEE
Q 004304          510 PCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSG-IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM  588 (762)
Q Consensus       510 P~KI~KkTAfIK~MF~s~lEV~~Fkga~LrTksG-iRG~IKkaLgt~~~~~~~~~~~~~phG~fRatFedkIl~sDiVfL  588 (762)
                      -.||-|..++|-++=.|..-..+..|-.|++..+ |.|.||-..||              .|+.-|-|++.+...|.|.|
T Consensus         7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~v~i~~k~i~Gkik~TfGT--------------kG~l~adF~geV~n~dkV~L   72 (79)
T d1wb1a2           7 KVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT--------------KGLLTAEFSGNVENRDKVIL   72 (79)
T ss_dssp             EEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT--------------TTBBCCCBSSCCCSSCEEEE
T ss_pred             cEEEecCcEEeeecccchhHHHhhcCcEEEecCCceEEEEeccccC--------------ceEEEEEeccccCCCceehh
Confidence            4688999999999999999999999999999999 99999999999              89999999999999999998


Q ss_pred             ec
Q 004304          589 RG  590 (762)
Q Consensus       589 rl  590 (762)
                      .-
T Consensus        73 ~R   74 (79)
T d1wb1a2          73 NR   74 (79)
T ss_dssp             EC
T ss_pred             hh
Confidence            63