Citrus Sinensis ID: 004310
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | 2.2.26 [Sep-21-2011] | |||||||
| O81635 | 987 | Kinesin-4 OS=Arabidopsis | no | no | 0.479 | 0.369 | 0.503 | 1e-93 | |
| O35231 | 824 | Kinesin-like protein KIFC | yes | no | 0.573 | 0.530 | 0.421 | 1e-91 | |
| Q9BVG8 | 833 | Kinesin-like protein KIFC | no | no | 0.573 | 0.524 | 0.423 | 2e-91 | |
| P46875 | 754 | Kinesin-3 OS=Arabidopsis | no | no | 0.594 | 0.600 | 0.397 | 6e-87 | |
| Q07970 | 793 | Kinesin-1 OS=Arabidopsis | no | no | 0.473 | 0.455 | 0.463 | 6e-83 | |
| F4JGP4 | 790 | Kinesin-5 OS=Arabidopsis | no | no | 0.473 | 0.456 | 0.461 | 1e-82 | |
| P46864 | 745 | Kinesin-2 OS=Arabidopsis | no | no | 0.451 | 0.461 | 0.491 | 2e-82 | |
| P45962 | 598 | Kinesin-like protein klp- | yes | no | 0.448 | 0.571 | 0.446 | 4e-78 | |
| P28739 | 770 | Kinesin-like protein klpA | yes | no | 0.458 | 0.453 | 0.444 | 3e-76 | |
| P79955 | 643 | Carboxy-terminal kinesin | N/A | no | 0.5 | 0.592 | 0.427 | 4e-74 |
| >sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/379 (50%), Positives = 244/379 (64%), Gaps = 14/379 (3%)
Query: 107 YVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQI-VSS 165
Y V E ++LYN V +LKGNIRV+CR RP + + G ++V + D E + I V S
Sbjct: 374 YKRVLEENRKLYNLVQDLKGNIRVYCRVRPFLPGQESGGLSAVEDID---EGTITIRVPS 430
Query: 166 DSSK---KQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEG 222
K K F F+ VF P QE VF+ +P+V SVLDGYNVCIFAYGQTG+GKTFTM G
Sbjct: 431 KYGKAGQKPFMFNKVFGPSATQEEVFSDMQPLVRSVLDGYNVCIFAYGQTGSGKTFTMTG 490
Query: 223 ----TPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278
T E+ GVNYR L +LF +S R YE+ V MLE+YNE++RDLL ++ +K+
Sbjct: 491 PKELTEESLGVNYRALADLFLLSNQRKDTTSYEISVQMLEIYNEQVRDLLAQDGQ--TKR 548
Query: 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVS 338
LEI+ + G VP + V T++V +L+ G R+V ST N+ SSRSH + V
Sbjct: 549 LEIRNNSHNGIN-VPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSCVTVH 607
Query: 339 VKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASK 398
V+G +L +G + LVDLAGSERV K EV G+RLKE+Q INKSLSALGDVIS+L+ K
Sbjct: 608 VQGRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLSQK 667
Query: 399 SGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGIESGPAR 458
+ H+PYRNSKLT +LQ SLGG KTLMFV ISP LGET+ +L FA RV +E G AR
Sbjct: 668 TSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVELGAAR 727
Query: 459 KQSDISELFKYKQMAEKLK 477
D SE+ + K+ LK
Sbjct: 728 VNKDNSEVKELKEQIANLK 746
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Microtubule-binding motor protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 | Back alignment and function description |
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| >sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4 | Back alignment and function description |
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| >sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1 | Back alignment and function description |
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| >sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1 | Back alignment and function description |
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| >sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 | Back alignment and function description |
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| >sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3 | Back alignment and function description |
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| >sp|P79955|CTK2_XENLA Carboxy-terminal kinesin 2 OS=Xenopus laevis PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| 255542630 | 786 | Kinesin-3, putative [Ricinus communis] g | 0.964 | 0.935 | 0.738 | 0.0 | |
| 359487795 | 783 | PREDICTED: kinesin-related protein 2-lik | 0.954 | 0.928 | 0.716 | 0.0 | |
| 449531422 | 794 | PREDICTED: kinesin-1-like [Cucumis sativ | 0.923 | 0.886 | 0.698 | 0.0 | |
| 357441667 | 778 | Kinesin [Medicago truncatula] gi|3554801 | 0.952 | 0.933 | 0.693 | 0.0 | |
| 296088325 | 1347 | unnamed protein product [Vitis vinifera] | 0.937 | 0.530 | 0.707 | 0.0 | |
| 356574943 | 795 | PREDICTED: kinesin-4-like [Glycine max] | 0.951 | 0.911 | 0.675 | 0.0 | |
| 449443177 | 789 | PREDICTED: kinesin-1-like [Cucumis sativ | 0.917 | 0.885 | 0.685 | 0.0 | |
| 150036248 | 791 | kinesin [Cucumis melo subsp. melo] | 0.917 | 0.883 | 0.684 | 0.0 | |
| 334187981 | 765 | ATP binding / microtubule motor [Arabido | 0.917 | 0.913 | 0.674 | 0.0 | |
| 356571115 | 759 | PREDICTED: kinesin-4-like [Glycine max] | 0.939 | 0.943 | 0.640 | 0.0 |
| >gi|255542630|ref|XP_002512378.1| Kinesin-3, putative [Ricinus communis] gi|223548339|gb|EEF49830.1| Kinesin-3, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1108 bits (2865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/752 (73%), Positives = 635/752 (84%), Gaps = 17/752 (2%)
Query: 20 ERVEDTKNSVDEDSVSNGRQEFSPVQGPALPILQKIACLSSEIENLKRDHTSLLHHVKSI 79
E VE+T NS +E+S S+ QE S Q P LPILQKI LS +I+NLK++H+ L + VK++
Sbjct: 30 EIVEETANSTNENSESSRNQETSSAQEPTLPILQKIINLSYQIQNLKKEHSILSNQVKTV 89
Query: 80 STDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNK 139
+ DSFPG VLDTLRLL NEHELLKKKY++ SSERK+LYNEVIELKGNIRVFCRCRP+N+
Sbjct: 90 NADSFPGSQVLDTLRLLCNEHELLKKKYLEESSERKRLYNEVIELKGNIRVFCRCRPINQ 149
Query: 140 AENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVL 199
E+ANGST VVEFDSS ENEL I SSD+S+KQFKFD+VFKPEDNQEAVFA+TKP+V+SVL
Sbjct: 150 VESANGSTCVVEFDSSLENELHITSSDASRKQFKFDHVFKPEDNQEAVFAETKPIVSSVL 209
Query: 200 DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEV 259
DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR+S+ R+ +MRYELFVSMLEV
Sbjct: 210 DGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRISQERSHVMRYELFVSMLEV 269
Query: 260 YNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSV 319
YNEKIRDLLVEN+NQP KKLEIKQ AE G+ EVPGL EA VYGTEEVWELLKSG R R+V
Sbjct: 270 YNEKIRDLLVENTNQPPKKLEIKQGAE-GSPEVPGLVEACVYGTEEVWELLKSGNRARAV 328
Query: 320 GSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQ 379
GSTN NELSSRSHCLLRV+VKGENLI+GQKT+SHLWLVDLAGSERVGKIEV+GERLKESQ
Sbjct: 329 GSTNGNELSSRSHCLLRVTVKGENLIDGQKTRSHLWLVDLAGSERVGKIEVEGERLKESQ 388
Query: 380 FINKSLSALGDVISALASKSGHIPYRN--------SKLTHILQSSLGGDCKTLMFVQISP 431
FINKSLSALGDVIS+LASKSGHIP+ LT Q++ GGDCKTLMFVQISP
Sbjct: 389 FINKSLSALGDVISSLASKSGHIPFSGVFWVLFPVKTLTGTSQNA-GGDCKTLMFVQISP 447
Query: 432 SSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQDEKETKKLQDNLQ 491
S++DLGETLCSLNFASRVRGIESGPARKQ+D SELFKYKQMAEKL+ DEKETKKLQ+NLQ
Sbjct: 448 SAADLGETLCSLNFASRVRGIESGPARKQTDFSELFKYKQMAEKLQHDEKETKKLQENLQ 507
Query: 492 SVQLRLAAREHICRALQEKVKDLENQLAEERKTRIKQETRAFAATSTQ---STLKQVAVK 548
S+QLRLAARE CR+LQEKV++LENQL EERKTR+KQETRAFA S+Q +LK A K
Sbjct: 508 SLQLRLAAREQKCRSLQEKVRELENQLGEERKTRLKQETRAFATASSQPSLPSLKLAAEK 567
Query: 549 TKTEKKPPLAPSKMRMPLRRISNFVPPQSPRPPQKKNTMRTTMAAS-EGKENTQRTTMTA 607
TK EKKPPLAPSK+RMPLRRISNF+PP SP +K N + + +S + KEN R TM
Sbjct: 568 TKIEKKPPLAPSKLRMPLRRISNFIPPPSPLQTKKFNASASAVRSSVQDKENIARNTM-G 626
Query: 608 PTNAKMLMIPRRMSIAVR-PTPSTTQAIQPKRRVSIATLRPETSSHMTTPLHTSLSRHQN 666
K L+ PRR+S+AVR P +TQ +QP+RRVSIATLRPE +S +TTPL TS S+ +N
Sbjct: 627 ERGTKSLLQPRRISVAVRAPLTISTQVLQPRRRVSIATLRPELNSDLTTPLRTSGSQLKN 686
Query: 667 GNAIGRQSLMRDPRKARYSKLFSPMPELNTALESTPTAMRCSSKFMGSPPTQAPGSWKPK 726
A+GRQS M+DPRKARYS+LFSP+PE +A E+TPTA+R SSKFMGSPP G WKP+
Sbjct: 687 SGAMGRQSFMKDPRKARYSRLFSPLPEFQSASETTPTAIRSSSKFMGSPPAAQAGPWKPR 746
Query: 727 HPTVVALQRKTLVWSPLKARGMKNYRR-SLLP 757
HPTVVALQRK+LVWSPLK RG KNYR+ S+LP
Sbjct: 747 HPTVVALQRKSLVWSPLKLRGPKNYRKSSILP 778
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487795|ref|XP_002280804.2| PREDICTED: kinesin-related protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449531422|ref|XP_004172685.1| PREDICTED: kinesin-1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357441667|ref|XP_003591111.1| Kinesin [Medicago truncatula] gi|355480159|gb|AES61362.1| Kinesin [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|296088325|emb|CBI36770.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356574943|ref|XP_003555602.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449443177|ref|XP_004139357.1| PREDICTED: kinesin-1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|150036248|gb|ABR67411.1| kinesin [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
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| >gi|334187981|ref|NP_198107.3| ATP binding / microtubule motor [Arabidopsis thaliana] gi|332006317|gb|AED93700.1| ATP binding / microtubule motor [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356571115|ref|XP_003553726.1| PREDICTED: kinesin-4-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| TAIR|locus:2101645 | 1087 | KP1 "kinesin-like protein 1" [ | 0.832 | 0.583 | 0.359 | 1.6e-86 | |
| UNIPROTKB|F1RF39 | 877 | KIFC3 "Uncharacterized protein | 0.576 | 0.500 | 0.420 | 3.8e-85 | |
| TAIR|locus:2026639 | 1071 | AT1G63640 [Arabidopsis thalian | 0.503 | 0.358 | 0.461 | 4e-85 | |
| UNIPROTKB|E2QS65 | 764 | KIFC3 "Uncharacterized protein | 0.576 | 0.574 | 0.418 | 6.2e-85 | |
| UNIPROTKB|F1PZT6 | 933 | KIFC3 "Uncharacterized protein | 0.576 | 0.470 | 0.418 | 6.2e-85 | |
| UNIPROTKB|F6UN94 | 842 | KIFC3 "Uncharacterized protein | 0.576 | 0.521 | 0.418 | 6.2e-85 | |
| MGI|MGI:109202 | 824 | Kifc3 "kinesin family member C | 0.576 | 0.532 | 0.416 | 1.3e-84 | |
| UNIPROTKB|F1LPW9 | 824 | Kifc3 "Protein Kifc3" [Rattus | 0.576 | 0.532 | 0.416 | 1.3e-84 | |
| TAIR|locus:2014129 | 1140 | AT1G18410 [Arabidopsis thalian | 0.635 | 0.424 | 0.416 | 1.3e-84 | |
| UNIPROTKB|E1BFA7 | 833 | LOC539231 "Uncharacterized pro | 0.576 | 0.527 | 0.418 | 1.7e-84 |
| TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 245/682 (35%), Positives = 354/682 (51%)
Query: 31 EDSVSNGRQEFSPVQGPALPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVL 90
E S N R EFSP A+ + QK E+E +K + VK + ++ L
Sbjct: 291 EFSRLNAR-EFSPGHVEAIGLQQK------ELEEVKSNFVETRSQVKQMQSE---WQKEL 340
Query: 91 DTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVV 150
+ E+ Y V E + LYNEV +LKG IRV+CR RP + + ST V
Sbjct: 341 QRIVHHVKAMEVTSSSYHKVLEENRLLYNEVQDLKGTIRVYCRVRPFFQEQKDMQST--V 398
Query: 151 EFDSSQENEL---QIVXXXXXXXXXXXXYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIF 207
++ N + VF +QE ++ T+PV+ SVLDG+NVCIF
Sbjct: 399 DYIGENGNIIINNPFKQEKDARKIFSFNKVFGQTVSQEQIYIDTQPVIRSVLDGFNVCIF 458
Query: 208 AYGQTGTGKTFTMEG----TPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEK 263
AYGQTG+GKT+TM G T GVNYR L +LF++S R ++ YE+ V M+E+YNE+
Sbjct: 459 AYGQTGSGKTYTMSGPDLMTETTWGVNYRALRDLFQLSNARTHVVTYEIGVQMIEIYNEQ 518
Query: 264 IRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTN 323
+RDLLV + + S++L+I+ ++ VP V T +V +L++ G + R+VG+T
Sbjct: 519 VRDLLVSDGS--SRRLDIRNNSQLNGLNVPDANLIPVSNTRDVLDLMRIGQKNRAVGATA 576
Query: 324 ANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINK 383
NE SSRSH +L V V+G+ L +G + L LVDLAGSERV K E GERLKE+Q INK
Sbjct: 577 LNERSSRSHSVLTVHVQGKELASGSILRGCLHLVDLAGSERVEKSEAVGERLKEAQHINK 636
Query: 384 SLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSL 443
SLSALGDVI ALA KS H+PYRNSKLT +LQ SLGG KTLMFV I+P + +GET+ +L
Sbjct: 637 SLSALGDVIYALAQKSSHVPYRNSKLTQVLQDSLGGQAKTLMFVHINPEVNAVGETISTL 696
Query: 444 NFASRVRGIESGPARKQSDISELFKYKQMAEKLKQD-EKETKKLQDNLQSVQLRLAAREH 502
FA RV IE G AR + E+ K LK EK+ +L+ L+S +R
Sbjct: 697 KFAQRVASIELGAARSNKETGEIRDLKDEISSLKSAMEKKEAELEQ-LRSGSIRNTTECQ 755
Query: 503 ICRALQE-KVKDLENQLAE--ERKTRIKQETRAFAATSTQSTLKQVAVKTKTEKKPPLAP 559
RA+ + N E + TR++ S ST KQ + P
Sbjct: 756 RARAVSPFHLPRTGNGAGTKAEASPQPNDGTRSYETRSC-STGKQ-----RKSGFPSALR 809
Query: 560 SKMRMPLRRISNFVPPQ-SPRPPQKK-NTMRTTMAASEGKEN-TQRTTMT-APTNAKMLM 615
++ P R+ N + +P P ++ +T R + S K + TQ ++ P A++ +
Sbjct: 810 NREASP--RMPNLAEERLNPSPSRRSLSTDRASTIKSRNKPDVTQNLPVSRTPFPARVPV 867
Query: 616 IPRRMSIAVRP---------TPSTTQAIQPKRRVSIATLRPETSS-HMTTPLHTSLSRHQ 665
+ ++ + P T ++++A Q +++S L PE H+ LH +
Sbjct: 868 VKSFSTVPLNPSAENNHRLHTDNSSEAFQNHQKLSARKLFPEIEEEHIRHALHIRQGGVK 927
Query: 666 NGNAIGRQSLMRDPRKARYSKL 687
A ++ + P AR+ KL
Sbjct: 928 KTRAESSKAKAKQPSPARFQKL 949
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| UNIPROTKB|F1RF39 KIFC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| TAIR|locus:2026639 AT1G63640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QS65 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PZT6 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6UN94 KIFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:109202 Kifc3 "kinesin family member C3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LPW9 Kifc3 "Protein Kifc3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BFA7 LOC539231 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT5G27550 | ATP binding / microtubule motor; ATP binding / microtubule motor; FUNCTIONS IN- microtubule motor activity, ATP binding; INVOLVED IN- microtubule-based movement; LOCATED IN- microtubule associated complex; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- Kinesin, motor region (InterPro-IPR001752); BEST Arabidopsis thaliana protein match is- kinesin motor protein-related (TAIR-AT2G22610.1). (762 aa) | ||||||
(Arabidopsis thaliana) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 762 | |||
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 1e-174 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-145 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-142 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-126 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 1e-107 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 8e-99 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-94 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 2e-93 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 1e-92 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 6e-86 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 3e-83 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 4e-76 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 5e-76 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 7e-76 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 9e-75 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 7e-72 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 7e-71 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 3e-51 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 4e-38 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 4e-14 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 6e-12 |
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
Score = 502 bits (1295), Expect = e-174
Identities = 187/332 (56%), Positives = 227/332 (68%), Gaps = 4/332 (1%)
Query: 125 KGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQ 184
KGNIRVFCR RPL +E + +SV+ F +++ KK F FD VF P+ +Q
Sbjct: 1 KGNIRVFCRVRPLLPSE-STEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQ 59
Query: 185 EAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKHR 244
E VF + P+V S LDGYNVCIFAYGQTG+GKT+TMEG PEN G+ R LE+LF ++
Sbjct: 60 EDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEEL 119
Query: 245 NGI-MRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGT 303
Y + SMLE+YNE IRDLL P KKLEIK ++G T V LTE V
Sbjct: 120 KEKGWSYTITASMLEIYNETIRDLLATKPA-PKKKLEIKHDSKGETY-VTNLTEVPVSSP 177
Query: 304 EEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSE 363
EEV LL G++ RSV STN NE SSRSH + ++ ++G NL G++T+ L LVDLAGSE
Sbjct: 178 EEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSE 237
Query: 364 RVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKT 423
R+ K G+RLKE+Q INKSLSALGDVISAL SK H+PYRNSKLT++LQ SLGG+ KT
Sbjct: 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKT 297
Query: 424 LMFVQISPSSSDLGETLCSLNFASRVRGIESG 455
LMFV ISP S+L ETLCSL FASRVR +E G
Sbjct: 298 LMFVNISPLESNLSETLCSLRFASRVRSVELG 329
|
Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329 |
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 99.02 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 95.25 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.83 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 93.44 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 91.63 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 90.9 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.4 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.25 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 90.01 | |
| PRK12377 | 248 | putative replication protein; Provisional | 89.83 | |
| PRK06620 | 214 | hypothetical protein; Validated | 89.66 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 89.56 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 89.16 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 89.09 | |
| PRK08116 | 268 | hypothetical protein; Validated | 88.98 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 88.96 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 88.62 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.6 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 88.36 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 88.0 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 87.78 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 87.7 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 87.5 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 86.88 | |
| PRK09087 | 226 | hypothetical protein; Validated | 86.61 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 85.9 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 85.57 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 85.07 | |
| PRK06526 | 254 | transposase; Provisional | 84.99 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 82.86 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 82.41 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 81.88 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 81.62 | |
| PRK08181 | 269 | transposase; Validated | 80.91 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 80.12 |
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-93 Score=827.07 Aligned_cols=427 Identities=52% Similarity=0.713 Sum_probs=372.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004310 45 QGPALPILQKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGP-DVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIE 123 (762)
Q Consensus 45 ~~~~~~~~~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~e 123 (762)
.......-+++..|+.+++.+|.++..|..++..+..+..... .+...+..|......|.+++ +|+.+||+|||+++|
T Consensus 233 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 233 EGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444445566788888888888888888887775543210000 12222555666677777888 888999999999999
Q ss_pred cCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEeeCCCCce----eeecCeeeCCCCChhHHHhccchhhhhhc
Q 004310 124 LKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKK----QFKFDYVFKPEDNQEAVFAQTKPVVTSVL 199 (762)
Q Consensus 124 lkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~~~~~~k----~F~FD~VF~~~~tQ~eVf~~~~plV~svl 199 (762)
+||||||||||||+.+.|.......++.++.. ..+.+.......+ .|.||+||+|.++|++||.++.|+|++||
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~l 389 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ--GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSAL 389 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCc--ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHh
Confidence 99999999999999998887644445544433 3455554443333 49999999999999999999999999999
Q ss_pred cCcceeEEeeccCCCCCccccCC-CCCCCCchhhhHHHHHHHhhccCCceeEEEEEEEEEEEccccccccccCCCCCCcc
Q 004310 200 DGYNVCIFAYGQTGTGKTFTMEG-TPENRGVNYRTLEELFRVSKHRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKK 278 (762)
Q Consensus 200 dGyN~~IfAYGqTGSGKTyTM~G-~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~ 278 (762)
||||+||||||||||||||||.| +++++|||||++++||..+.....+|.|.+.++|+|||||.|+|||.+.. ...+
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~--~~~k 467 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES--YVGK 467 (670)
T ss_pred cCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc--cccc
Confidence 99999999999999999999999 79999999999999999999888899999999999999999999997653 3568
Q ss_pred ceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEe
Q 004310 279 LEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVD 358 (762)
Q Consensus 279 l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVD 358 (762)
+.|+++.+++ ..|+|++.+.|.+.+++..+++.|..+|++++|.+|++|||||+||+|+|.+.+..++..+.|.|+|||
T Consensus 468 ~~I~~~~~~~-~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 468 LEIVDDAEGN-LMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVD 546 (670)
T ss_pred eeEEEcCCCc-eecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEee
Confidence 9999999855 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCCCccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 359 LAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 359 LAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
||||||++++++.|+|++|+++||+||++||+||.||+.+..||||||||||+||||+|||++||+|||+|||...++.|
T Consensus 547 LAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~E 626 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFE 626 (670)
T ss_pred cccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccCCCccccchhHHHHHHHHHHHHH
Q 004310 439 TLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLK 477 (762)
Q Consensus 439 TLsTLrFAsrak~I~~~p~~~~~~~~~~~~~k~~~e~lk 477 (762)
|+++|+||+|++.++.|+++.+........+..+...++
T Consensus 627 tl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~ 665 (670)
T KOG0239|consen 627 TLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEK 665 (670)
T ss_pred hhhccchHHHhhceecccccccccccchhhhhhhhhhhh
Confidence 999999999999999999999888777766655554443
|
|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 762 | ||||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 3e-82 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 6e-70 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 2e-68 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 3e-66 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 4e-65 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-63 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 8e-63 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 9e-63 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 2e-62 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 3e-62 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-62 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-62 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 6e-62 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 6e-62 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 7e-62 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 1e-60 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 4e-60 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-59 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 8e-58 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 9e-58 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 1e-56 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 1e-56 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 1e-56 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-56 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-53 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 2e-52 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 3e-51 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 3e-51 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 4e-51 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 4e-51 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 4e-51 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 4e-51 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 5e-51 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 1e-50 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-50 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-50 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 7e-50 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 3e-48 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 5e-48 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 2e-47 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 2e-46 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-46 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 2e-44 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-44 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 4e-44 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 7e-44 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 4e-42 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-40 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-33 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 4e-33 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 7e-33 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 2e-30 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-30 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 2e-29 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-29 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 5e-29 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 6e-14 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 1e-13 |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
|
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 156/372 (41%), Positives = 221/372 (59%), Gaps = 11/372 (2%)
Query: 123 ELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPED 182
++KG IRV+CR RPL + E + + E ++ + D KQ +D VF
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVD--EFTVEHLWKDDKAKQHMYDRVFDGNA 59
Query: 183 NQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSK 242
Q+ VF TK +V S +DGYNVCIFAYGQTG+GKTFT+ G N G+ R + ELFR+ K
Sbjct: 60 TQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMK 119
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYG 302
+ + L M+E+Y + + DLL+ + KL+IK+ ++G V +T +
Sbjct: 120 KDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK-RLKLDIKKDSKGMV-SVENVTVVSIST 177
Query: 303 TEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGS 362
EE+ +++ G+ R T NE SSRSH ++ V ++ NL + L VDLAGS
Sbjct: 178 YEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGS 237
Query: 363 ERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCK 422
ERV K G +LKE+Q INKSLSALGDVISAL+S + HIPYRN KLT ++ SLGG+ K
Sbjct: 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAK 297
Query: 423 TLMFVQISPSSSDLGETLCSLNFASRVRGIESGPARKQSDISELFKYKQMAEKLKQ---- 478
TLMFV ISP+ S+L ET SL +ASRVR I + P++ E+ + K++ K+
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNV-SSKEVARLKKLVSYWKEQAGR 356
Query: 479 --DEKETKKLQD 488
D++E +++QD
Sbjct: 357 KGDDEELEEIQD 368
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 100.0 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.94 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.94 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 98.39 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.79 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 93.31 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.21 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 91.17 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 88.45 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 88.34 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 85.34 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 84.78 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 83.64 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 82.74 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 81.41 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 81.23 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 80.95 |
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-96 Score=809.12 Aligned_cols=386 Identities=42% Similarity=0.603 Sum_probs=321.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Q 004310 53 QKIACLSSEIENLKRDHTSLLHHVKSISTDSFPGPDVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFC 132 (762)
Q Consensus 53 ~~~~~l~~~i~~lk~e~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~ 132 (762)
++|..|..+|..++.+..+|. +.++.+..++++++++|.+++.+||+|||+++|++|||||||
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~-----------------~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~v 65 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALK-----------------EKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYL 65 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344555555555555444444 445567888999999999999999999999999999999999
Q ss_pred EeCCCCcc-cccCCCceEEE-ecCCCC-ceEEEee--CCCCceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEE
Q 004310 133 RCRPLNKA-ENANGSTSVVE-FDSSQE-NELQIVS--SDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIF 207 (762)
Q Consensus 133 RvRPl~~~-E~~~~~~~vv~-~~~~~~-~~l~v~~--~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~If 207 (762)
||||+... |........+. ++.... ..+.+.. .....+.|.||+||+++++|++||+.+.|+|+++++|||+|||
T Consensus 66 RvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tif 145 (403)
T 4etp_A 66 RIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIF 145 (403)
T ss_dssp EECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEE
Confidence 99999877 33332222222 222211 1233322 2234578999999999999999999988999999999999999
Q ss_pred eeccCCCCCccccCCCCCCCCchhhhHHHHHHHhhc-cCCceeEEEEEEEEEEEccccccccccCCCC-----CCcccee
Q 004310 208 AYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVSKH-RNGIMRYELFVSMLEVYNEKIRDLLVENSNQ-----PSKKLEI 281 (762)
Q Consensus 208 AYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~-----~~~~l~I 281 (762)
|||||||||||||+|+ ++|||||++++||..++. ....+.|.|+|||+|||||+|+|||.+.... ...++.+
T Consensus 146 AYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i 223 (403)
T 4etp_A 146 AYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223 (403)
T ss_dssp EESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCE
T ss_pred EECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceee
Confidence 9999999999999996 469999999999998775 3456899999999999999999999875421 2456789
Q ss_pred eeccCCCeEEeCCceEEEecChHHHHHHHHHHhhcccccccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccC
Q 004310 282 KQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAG 361 (762)
Q Consensus 282 r~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAG 361 (762)
++++..+.++|.|++++.|.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|.+.+...+....|+|+||||||
T Consensus 224 ~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAG 303 (403)
T 4etp_A 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 303 (403)
T ss_dssp EEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred EEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCC
Confidence 99888788899999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred cccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC---CccCCCCchhhhcccccCCCceeeEEEecCCCCCChHh
Q 004310 362 SERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG---HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGE 438 (762)
Q Consensus 362 SER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~---hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~E 438 (762)
|||++++++.|+|++|+++||+||++||+||.||+++.. ||||||||||+||||+|||||+|+|||||||+..+++|
T Consensus 304 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~E 383 (403)
T 4etp_A 304 SERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 383 (403)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHH
T ss_pred CccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHH
Confidence 999999999999999999999999999999999997654 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccCCC
Q 004310 439 TLCSLNFASRVRGIESGPA 457 (762)
Q Consensus 439 TLsTLrFAsrak~I~~~p~ 457 (762)
|++||+||+||++|+.+|.
T Consensus 384 Tl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 384 TLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhhcccCCC
Confidence 9999999999999998874
|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 762 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 1e-92 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 7e-91 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 1e-85 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 6e-85 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 9e-85 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 6e-82 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 2e-81 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 1e-79 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 3e-75 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 290 bits (742), Expect = 1e-92
Identities = 136/330 (41%), Positives = 187/330 (56%), Gaps = 16/330 (4%)
Query: 127 NIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVSSDSSKKQFKFDYVFKPEDNQEA 186
NI+V CR RPLN++E G + +F + + K + FD VF+ +QE
Sbjct: 6 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-------ASKPYAFDRVFQSSTSQEQ 58
Query: 187 VFAQT-KPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTP---ENRGVNYRTLEELFRVSK 242
V+ K +V VL+GYN IFAYGQT +GKT TMEG E G+ R ++++F
Sbjct: 59 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 118
Query: 243 HRNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYG 302
+ + + + VS E+Y +KIRDLL + S + + V G TE V
Sbjct: 119 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNR-----VPYVKGCTERFVCS 173
Query: 303 TEEVWELLKSGARVRSVGSTNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGS 362
+EV + + G R V TN NE SSRSH + ++VK EN QK L+LVDLAGS
Sbjct: 174 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 233
Query: 363 ERVGKIEVDGERLKESQFINKSLSALGDVISALASKSGHIPYRNSKLTHILQSSLGGDCK 422
E+V K +G L E++ INKSLSALG+VISALA S ++PYR+SK+T ILQ SLGG+C+
Sbjct: 234 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 293
Query: 423 TLMFVQISPSSSDLGETLCSLNFASRVRGI 452
T + + SPSS + ET +L F R + I
Sbjct: 294 TTIVICCSPSSYNESETKSTLLFGQRAKTI 323
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
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| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
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| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
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| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
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Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.7 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.53 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 85.11 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 84.85 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.2 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 82.38 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 81.62 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 81.44 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.58 |
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=6.9e-84 Score=704.70 Aligned_cols=355 Identities=40% Similarity=0.617 Sum_probs=309.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEeCCCCcccccCCCceEEEecCCCCceEEEee---
Q 004310 88 DVLDTLRLLSNEHELLKKKYVDVSSERKQLYNEVIELKGNIRVFCRCRPLNKAENANGSTSVVEFDSSQENELQIVS--- 164 (762)
Q Consensus 88 ~~~~~l~~l~~~~~~l~~~~~~e~~~Rk~l~N~l~elkGnIRV~~RvRPl~~~E~~~~~~~vv~~~~~~~~~l~v~~--- 164 (762)
++...++++..+.+.+.+++.++..+||+|||+++|+||||||+|||||+++.|...+...++..+. ..+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~---~~v~~~~~~~ 83 (368)
T d2ncda_ 7 ELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDE---STVELQSIDA 83 (368)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETT---TEEEEECSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCC---CeEEEccCCc
Confidence 3556788889999999999999999999999999999999999999999999987666555554432 2343332
Q ss_pred ---CCCCceeeecCeeeCCCCChhHHHhccchhhhhhccCcceeEEeeccCCCCCccccCCCCCCCCchhhhHHHHHHHh
Q 004310 165 ---SDSSKKQFKFDYVFKPEDNQEAVFAQTKPVVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFRVS 241 (762)
Q Consensus 165 ---~~~~~k~F~FD~VF~~~~tQ~eVf~~~~plV~svldGyN~~IfAYGqTGSGKTyTM~G~~~~~GIipRal~~LF~~~ 241 (762)
.....+.|.||+||+++++|++||+.+.|+|+++++|||+||||||||||||||||+|++.++||+||++++||..+
T Consensus 84 ~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~ 163 (368)
T d2ncda_ 84 QAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 163 (368)
T ss_dssp HHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHH
T ss_pred cccCCcCceeeECCeEECCCCCccchHHHHHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhh
Confidence 23346789999999999999999988899999999999999999999999999999999999999999999999877
Q ss_pred hc-cCCceeEEEEEEEEEEEccccccccccCCCCCCccceeeeccCCCeEEeCCceEEEecChHHHHHHHHHHhhccccc
Q 004310 242 KH-RNGIMRYELFVSMLEVYNEKIRDLLVENSNQPSKKLEIKQAAEGGTQEVPGLTEAQVYGTEEVWELLKSGARVRSVG 320 (762)
Q Consensus 242 ~~-~~~~~~~~V~vS~lEIYNE~I~DLL~~~s~~~~~~l~Ir~~~~~g~~~V~gLte~~V~S~ee~~~lL~~G~~~R~~~ 320 (762)
.. ......|.|+|||+|||||+|+|||++... .....+.+++. +.++++|++++.|.+++++..++..|.++|.++
T Consensus 164 ~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~--~~~~~~~~d~~-~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~ 240 (368)
T d2ncda_ 164 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQK--DMEIRMAKNNK-NDIYVSNITEETVLDPNHLRHLMHTAKMNRATA 240 (368)
T ss_dssp HHHHTTSCEEEEEEEEEEESSSCEEETTCSSCC--CCCEEECTTCT-TCEEETTCCCEEECSHHHHHHHHHHHHHHSCCC
T ss_pred hhhccccccceEEEEEEEEecceeecccccccc--cccceeecccc-ccccccccceeccCCHHHHHHHHHHHHhhcccc
Confidence 64 344578999999999999999999976532 23445556666 446799999999999999999999999999999
Q ss_pred ccCCCCCCCCceeEEEEEEEeeeccCCceEEEEEEEEeccCcccccccccchhhhHHHHHHhhhHHHHHHHHHHHhcCCC
Q 004310 321 STNANELSSRSHCLLRVSVKGENLINGQKTKSHLWLVDLAGSERVGKIEVDGERLKESQFINKSLSALGDVISALASKSG 400 (762)
Q Consensus 321 sT~~N~~SSRSH~If~I~V~~~~~~~g~~~~SkL~LVDLAGSER~~kt~~~g~rlkEa~~INkSLsaLg~VI~ALa~k~~ 400 (762)
.|.+|..|||||+||+|+|...+...+....|+|+||||||+|+... +.+++|+.+||+||++||+||.+|++++.
T Consensus 241 ~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~----~~~~~E~~~IN~SL~aL~~vi~aL~~~~~ 316 (368)
T d2ncda_ 241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNVILALLQKQD 316 (368)
T ss_dssp SSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccceEEEEEEEEEecCCCceEeeeeeeeeeccccccch----hhhhcccccchhhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988888888999999999999998754 67899999999999999999999999999
Q ss_pred CccCCCCchhhhcccccCCCceeeEEEecCCCCCChHhhHHHHHHHhHhhcc
Q 004310 401 HIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSSDLGETLCSLNFASRVRGI 452 (762)
Q Consensus 401 hIPYRdSKLT~LLqdsLgGnskT~mI~~ISP~~~~~~ETLsTLrFAsrak~I 452 (762)
|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||+++
T Consensus 317 ~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 317 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp CCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred CCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999864
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| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
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| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
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| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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